dvi_20298

CDS [Dvir\GJ13717-cds]; CDS [Dvir\GJ13717-cds]; exon [dvir_GLEANR_13587:3]; exon [dvir_GLEANR_13587:2]; intron [Dvir\GJ13717-in]

Name	Class	Family	Strand
TART_DV	LINE	Jockey	+

##################################################------------------------------------------------------------------------------------------------################################################## CCACCTGGTGTCAATTCCAGCTTAAACAGCAATAGCACCACCGCCAGCTCGTCACATATATATCAGCACCTGCAACAGCAATCTCACAGCAGTAGCAACAACAACAACAACAATAACAATAATAATAATAATAATAATAATAATAGCAATGCCAAGAAGGTCGACAGACGGCCCCCCTCGAGCAGCTCAAATGCTT ****************************************************...........((..((((...............))))..))...***********************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060689 160x9_testes_total	SRR060682 9x140_0-2h_embryos_total	M047 female body	M028 head	SRR060670 9_testes_total	SRR060679 140x9_testes_total	V116 male body	M027 male body	V047 embryo
.......................................................................................................................................AATAATAATAGCAATGCCAAGAAGGTCG.................................	28	0	1	2.00	2	2	0	0	0	0	0	0	0	0
................................................................................................................................................................TCGGCAGACGGCCCCCCTCGAGCCGC..........	26	2	1	1.00	1	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................ACGGCCCCCCTCGAGCAGCTCA.......	22	0	1	1.00	1	0	0	1	0	0	0	0	0	0
...............................................................................AATCTCACAGCAGTAGCAAC.................................................................................................	20	0	1	1.00	1	0	0	0	0	0	0	1	0	0
.........................................................ATATATCAGCACCTGCAACA.......................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..............TTCCAGCTTAAACAGCAATAGCACCA............................................................................................................................................................	26	0	1	1.00	1	0	0	0	0	0	1	0	0	0
.................................................................................................................................................GCAATGCCAAGAAGGTCGAC...............................	20	0	1	1.00	1	0	1	0	0	0	0	0	0	0
......................................................CATATATATCAGCACCTGC...........................................................................................................................	19	0	1	1.00	1	0	0	0	1	0	0	0	0	0
...........................................................................CAGCAGTCTTACAGCAGGAGCA...................................................................................................	22	3	3	0.33	1	1	0	0	0	0	0	0	0	0
.TACCTGGTGTGAATTGCAG................................................................................................................................................................................	19	3	20	0.15	3	0	0	3	0	0	0	0	0	0
.....................................CCACGGCCAGCTCGTCAAGT...........................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	1
.....................................................................................................................................................TATCAACAAGGTCGACAGA............................	19	3	20	0.05	1	0	0	0	0	0	0	0	1	0
..............................................................................................GCAACAACAACAACAACAATAACA..............................................................................	24	0	20	0.05	1	0	0	1	0	0	0	0	0	0

GGTGGACCACAGTTAAGGTCGAATTTGTCGTTATCGTGGTGGCGGTCGAGCAGTGTATATATAGTCGTGGACGTTGTCGTTAGAGTGTCGTCATCGTTGTTGTTGTTGTTGTTATTGTTATTATTATTATTATTATTATTATTATCGTTACGGTTCTTCCAGCTGTCTGCCGGGGGGAGCTCGTCGAGTTTACGAA ***********************************************************************************************...........((..((((...............))))..))...****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060676 9xArg_ovaries_total	SRR060684 140x9_0-2h_embryos_total	SRR060659 Argentina_testes_total	SRR060667 160_females_carcasses_total	SRR060656 9x160_ovaries_total	V053 head	M027 male body	SRR060662 9x160_0-2h_embryos_total
..........................................................................TGTCGTTAGAGTGTCGTCATC.....................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0
.....ACCACAGTTAAGGACGACTAT..........................................................................................................................................................................	21	3	2	0.50	1	0	1	0	0	0	0	0	0
................................ACCGTGGTGCCGGTGGAGCAG...............................................................................................................................................	21	3	4	0.25	1	0	0	1	0	0	0	0	0
................................................................TCGTGGAAGCTGTCGTTA..................................................................................................................	18	2	13	0.23	3	0	0	0	2	0	0	1	0
........................................................................................CGTCATCGTTGTTGTTGTT.........................................................................................	19	0	15	0.13	2	0	0	0	0	2	0	0	0
............................................................................................................................................GTTATCGTCACGGTCCTTCC....................................	20	3	9	0.11	1	0	0	0	0	0	1	0	0
..........................................................GTATAGTCGTGGAGGTTGA.......................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_13049:17611616-17611811 +	dvi_20298	CCACCTGGTGTCAATTCCAGCTTA--AACAGCAA------T------------------------------------AG---------------------CACCA-CCGCCAGCTCGTCACATATATATCAGCACCTGCAAC--------------------------A------------------GCAA------TCT-CA-CAGCAGTAGCAACA---------------------------------------------------------ACAACAA------C----------AACAATAACAATA------------------ATAATAATAATAATAA----TAATA----------------------ATAGCAATGCCAAGA-------------------------------AGGTCGACAGACG-------------------------------GCC-------CCCCTCGAGCAGC--TCA---A------------------------------------------------ATGCTT
droMoj3	scaffold_6680:22656406-22656571 +		CCACCGGGTGTCAATTCCAGCTTA--AATAGCAA---------------------------T---------------AA---------------------CACCT-CCGCCACATCGTCACATATTTTTCAGCACCTAC------------------------A--ACA----------------------------------------GCAGCCAC------------------------------------------------------------AGCCG------C----------ACCAGCAG---------------CA----------------------------ACAGCAATCT--TACAGCA------GCACTAAGA-------------------------------------AGGTTGATAGACG-------------------------------GCT-------CCCCCAAAGCATT--TCA---A------------------------------------------------GTGCTT
droGri2	scaffold_15110:14569215-14569398 -		CCACCGGGTGTTAATTCCAGCTTA--AATAATA------ATA---GTAA------------T---------------AG---------------------CACCA-CCGTCACCAATTCACATATTTTCCAGCATCTGC------------------------AGC--AACAGCAGCAGCAGCACCTGCAG------TCC-CA-CAGCAT---------------------------------------------------------------------AAG------C----------AACAACAA----------------------------------------CAATAACA----------------------ATAGTAAAA-------------------------------------AAGCTGACAGACG-------------------------------GCC-------AGCCTCAAGTGGC--TCA---A------------------------------------------------ATGCAT
droWil2	scf2_1100000002615:1615-1776 +		CAACA-------------------GCAGCAGGAACAGCAGCA---GCAACAATATCAAC------------------AGCAACAC--------------------------------------------------CAGCAGC------AGGAACAGC-----------A---AC---------------------------AA-CAGCAGCAGCAACA---------------------------------------------------------ACAACAA------C----------AGCAGCAGCAACA------------------ATATCAACAGCAACAG----CAACA----------------------ACAGCAGCAGGAACAGCAACAA------------------------------------------------------------------------------------CAGCAGCA-GCA---A------------------------------------------------CAATAT
dp5	XR_group6:9117702-9117869 +		CCGTCT----CCAGCGCC--------AGCGCCC------ACA---GCAG-----------------------------GCG------------------CTGCCA-CCAT------TCC-------C------GCCAAT------AG---------CCACACCA--GCA---CC------AGCACCAGTAG------C---AA-CA---------------------------------------------------------------------GCAACAG------C----------AACAACAACA---------A---TA------A----------------TAATAACA-------ACAACAGTACCA---CTGGGAATGGCACCG----------------------------------CCGGCAGCAG-------------------------------TCC-------CACCAACAGCAGC--T----------------------------------------------------------CC
droPer2	scaffold_13:40892-41054 +		TCAACA----CGACATTC--------AACAACA------ACA---GCAACAGTTGCCAA------------------AATAGTTA-----------------------------------------------TC---AT------AGTTATCACAGT-----------T---AT---------------------------CA-TAACAACAACAACA---------------------------------------------------------ACAATAA------C----------AACAATAACAATA------------------ACAACAATAACAACAA----CAACA----------------------ATAGCACCACAAACACCCCCAC------------------------------------------------------------------------------------CAATCAAA-ACA---A------------------------------------------------CAACAG
droAna3	scaffold_13117:381970-382137 +		CAACA-----CCAACTCCACCAGC--AACAACA------ACA---GCAC------CAGC------------------AGCA------------------CCGCCA-CCAC------GCC-------CGGCAATGCCAATACAGCTACC---------------------------------------------------------ACCAACAACAAC------------------------------------------------------------AATAACAA---C----------AACAACAACA---------A---TA------CTAATAACAACA---A-CAATAACA----------------------ACAACAACAACAGTAGTGGCAA---------------------------------------------------------------------------------------CAGC-G---AGAA------------------------------------------------GCGCAA
droBip1	scf7180000395581:657-820 +		CAACC-------------------ACAGCAGCAG---------------------------C---------------CA------------------CAGCACCA-CCGC----------------CAGCAGCAACAACAAC--------------------------A------------------ACAATACAAATCAGCT-CAATAATAACAA------------------------------------------------------------------------C----------AACAATAACA---------A---------------------TA----ATAATAACA----------------------ACAACAATAATAATAATAATAA----------TAGTA----------------------------------------------------------------------------------------------------AAGGACATCATTTGAGCACCACCGAGGACTTGCATTCGC
droKik1	scf7180000298808:22278-22457 +		TCAACT------------------GCGGCTACAATGGCTGCG---GCGACATCAACAGCAAC---------------AA---CAACAGCGGCGGTTGC-----------------------------------------------AG---------CAACACTG--ACA----------------------------------------CCAGCAGCAGCAACAGCAGTT---------------------------------------------ACAACAA------C----------AACAGCAG---------------TTA---CAA---------TA----ACAACAGCA----------------------GTTACAACAAAAATAGTAGTTA----------CAACAACAG---------------AAGTTGCAGCAA--------------------------------------CAA--------C---A------------------------------------------------GCGCTA
droFic1	scf7180000453901:145248-145426 -		CAACA-------------------CCACC---------------------------------------------------------------------------A-CCAC----------------CAGCAATACCAACAACTCTAGTTCCAAC---AACAACA--ACA----------------------------------------ATAATAACAACAACACCAGCAACA------------------------------------------ACAATAA------C----------AACAATACAA---------A---------------------TA----ATAATAATA----------------------ACAACCATACGAATAATAATAA----------TAATAACAC-----------------------------------------------------------------------A-A----------CTAATCAAAAACAAGGACACCACTTGAGCACCACCG------------AAG
droEle1	scf7180000491011:2036890-2037057 -		CAACC-------------------ACAGCAGCAG---------------------------C---------------AA------------------CACCACCA-CCAC----------------CAGCAACACCAACAACTCTAGTTCCAAC---------A--ACA-------------------------------------AC---------------------------------------------------------------------AATAATAATAATAAC----AACAACAATAA------------------------------TAATA----ATAATAACA----------------------ACAACCATACAAATAATAATAA----------TAAC------------------------------------------------------------------------------A----------CGAATCAAAAACAAGGACACCACTTGAGCACCACCG--------------A
droRho1	scf7180000780199:6001-6190 +		CAATC-------------------ACAACAACAAAGGCAACA---GACAC------------------------------------------------ATCACCACGCAC-----CGGCAAACAAGCAACAACGCCAACATC----------ACAAT----------------------------------------CAT-CA-CAGCAGCAACAGCA---------------------------------------------------------ACAACAA------C----------AGCAACAGCAACA------------------TCAGCAACTCAGGCAA----CAGCA----------------------ACAGCAACACCAACAGCAACAG----------------------------------------------------------------------------------------------CAATCACAGCAAATCAAG--CA----------------GCCATCGAGG------GC-GTT
droBia1	scf7180000301496:94728-94908 -		TCGCCGATTGTCC-----------ATAACAACAG---------------------------CAACAACAGCAACAACAG--------------------------------------------------CAATATTTCTGCTTCTGA---------TTACACTG--TCG---CA---------------------A------A-CAACAGTACTAG------------------------------------------------------------------------C----------AATAATAACA---------ATAATAATAATAATAACAACAATA-----------------------------------------------ATAACAATAA----------TATTCACCCAAACCAGTTTG----------CTGCGG------------------------C-------CGCAAATATGAAC--TCA---A------------------------------------------------ATGCTG
droTak1	scf7180000415394:1078156-1078337 -		CAACC-------------------ACAGCAGCAG---------------------------C---------------AA------------------CACCACCA-CCAC----------------CAGCAACACCAACAACTCCAGTTCC------------------------------------------------------AACAACAACAAC---------------------------------------------------------------AATAATAAT----------AATAATAACAATAACAACA------------ACACGAATAATA----ATAATAATA----------------------ACAACCATACGAATAATAATAA----------T---------------------------------------------------------------------------------A----------CAAATCAAAAGCAAGGACACCACTTGAGCACCACCG---------AAGAAT
droEug1	scf7180000409548:58283-58463 +		CCGCAGAGCAACC-----------ACAGCAGCAG---------------------------C---------------AA------------------CACCACCA-CCAC----------------CAGCAACACCAACAACTCCAGTTCGAACAAC-----------A---AC---------------------------AA-CAACAATAATAA------------------------------------------------------------------------T----------AATAACAACAACAACAACAA---------CACCAGTAATAACA----ATAATAACA----------------------ACAATCATACAAACAATAATAA----------TAAT------------------------------------------------------------------------------A----------C------AAAGCAAGGACACCACTTGAG---------------------CA
dm3	chr2L:17437148-17437329 -		TTGCA-------------------GCACA---A---TCAGCATACGCTTCAT---------C---------------AG------------------C-----------------------------------AGCAGC------------------------AGC--TTCAGCAGCAGCAGCAGCAGCAG------TAC-GA-CAATACTGCGCCCA---------------------------------------------------------CCAACAA------CAA-TGCCAACCTTAATAACA---------------------A----------------TAATAACA-------ATAATAATACCGCTGGCAATCAAGCGGATAATAATG-------------------------------------G-------------------------------GCC-------AACGCTCAGCAAT--C-----------------------------TGCT---------------------TAGCTT
droSim2	x:5661724-5661944 -		TCAATT----CGGCTAGCA-----ACAACAACAATAA------------------------C---------------AA------------------CAACAACA-GCAC----------------CAGTAGCAACCACAAT--------------------------G------------------GCAGTGGAAACCA-CACAGCTGGCGGCGGT------------------------------------------------------------GGCAA------C----------AACAATAACA---------------------A----------------CAACAACA-------ACAACAATGCCGCCAGCTGCACCACA----------GTGGCGCTGGTCAATGGTAT---------------AAATGGCAGCGCCGCCAGTGTGACCATGTCCTCGGCC-------CACCACCAGCAACA-TCA---A------------------------------------------------TTGCTG
droSec2	scaffold_34:421757-421915 +		CAGGT-------------------GCAACAGCAACAACATCA---GCACCAGCACCAGG------------------TGCAACAG--------------------------------------------C---A---ACAGC---------------------AGC--ATCAGCAGCA------------------------G-CAGCAGCAGCAAC------------------------------------------------------------AGCAA------C----------AACAACAACAA------------------CAGCAACAACAACAACAA----CAACA----------------------ACAACAACAGGTGCAGCACCAA------------------------------------------------------------------------------------CAGCAGCA-GCA---A------------------------------------------------AAGCTT
droYak3	3L:8415917-8416091 -		GG------CGGCAGTCCTGGCAGC--AACAACAA------CA---ACAA------------C------AGCAAT---AA-----------------------------------------------------TAATAATA--------------------------------------------------------------A-CAATAACATACTCA------------ATCACAACAATCTCAATATCATTATCAATAACCATGCCTCCCTCAACAACAA------C----------AACAATAATAA------------------TAGTAATAATAATAACA-------ACAACAATCC--------------AGCCACA-------------------------------------------------------------------------------------------------------------CCAAATG------------------------------------------------CCAATC
droEre2	scaffold_4690:17013514-17013672 +		CCAGC---------------------AACAACAA------T---------------------------------------------------------AACAACA-ATAC----------------CAGCACCACCAACA--------------------------------------------------------------A-CAACAATACCAGC----------------------------------------------------------------------------------AATAACAACA---------ACAACA---------------------A----CAACA----------ACAGCACCA---CGAACAACAACAATAATAATAA----------TGTTAAAACAAAGCCCGTGGACACGAG-------------------------------TCCCTACTTGACCCCCGA---------G---A------------------------------------------------ATCTCA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CCACCTGGTGTCAATTCCAGCTTA--AACAGCAA------T------------------------------------AG---------------------CACCA-CCGCCAGCTCGTCACATATATATCAGCACCTGCAAC--------------------------A------------------GCAA------TCT-CA-CAGCAGTAGCAACA---------------------------------------------------------ACAACAA------C----------AACAATAACAATA------------------ATAATAATAATAATAA----TAATA----------------------ATAGCAATGCCAAGA-------------------------------AGGTCGACAGACG-------------------------------GCC-------CCCCTCGAGCAGC--TCA---A------------------------------------------------ATGCTT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................................................................................................................................................................AA----TAATA----------------------ATAGCAATGCCAAGA-------------------------------AGGTCG............................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG-------------------------------GCC-------CCCCTCGAGCAGC--TCA---.......................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................AA------TCT-CA-CAGCAGTAGCAAC................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................ATATATCAGCACCTGCAAC--------------------------A------------------..............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TTCCAGCTTA--AACAGCAA------T------------------------------------AG---------------------CACCA-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................GCAATGCCAAGA-------------------------------AGGTCGAC..........................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................CATATATATCAGCACCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GCAACA---------------------------------------------------------ACAACAA------C----------AACAATAACA....................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CCACCGGGTGTCAATTCCAGCTTA--AATAGCAA---------------------------T---------------AA---------------------CACCT-CCGCCACATCGTCACATATTTTTCAGCACCTAC------------------------A--ACA----------------------------------------GCAGCCAC------------------------------------------------------------AGCCG------C----------ACCAGCAG---------------CA----------------------------ACAGCAATCT--TACAGCA------GCACTAAGA-------------------------------------AGGTTGATAGACG-------------------------------GCT-------CCCCCAAAGCATT--TCA---A------------------------------------------------GTGCTT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

CCACCGGGTGTTAATTCCAGCTTA--AATAATA------ATA---GTAA------------T---------------AG---------------------CACCA-CCGTCACCAATTCACATATTTTCCAGCATCTGC------------------------AGC--AACAGCAGCAGCAGCACCTGCAG------TCC-CA-CAGCAT---------------------------------------------------------------------AAG------C----------AACAACAA----------------------------------------CAATAACA----------------------ATAGTAAAA-------------------------------------AAGCTGACAGACG-------------------------------GCC-------AGCCTCAAGTGGC--TCA---A------------------------------------------------ATGCAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

CAACA-------------------GCAGCAGGAACAGCAGCA---GCAACAATATCAAC------------------AGCAACAC--------------------------------------------------CAGCAGC------AGGAACAGC-----------A---AC---------------------------AA-CAGCAGCAGCAACA---------------------------------------------------------ACAACAA------C----------AGCAGCAGCAACA------------------ATATCAACAGCAACAG----CAACA----------------------ACAGCAGCAGGAACAGCAACAA------------------------------------------------------------------------------------CAGCAGCA-GCA---A------------------------------------------------CAATAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................AATATCAAC------------------AGCAACAC--------------------------------------------------CAGCAGC------.....................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0
......................................................TCAAC------------------AGCAACAC--------------------------------------------------CAGCAGC------AGGAAT...............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...............................................AACAATATCAAC------------------AGCAACAC--------------------------------------------------CAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
......................................................TCAAC------------------AGCAACAC--------------------------------------------------CAGCAGC------AGGAACA..............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................CA----------------------ACAGCAGCAGGAACAGCAACAA------------------------------------------------------------------------------------C.....................................................................	25	3	0.67	2	0	0	0	2	0
.......................................................................................................................................................................................................................................................................................................................A------------------ATATCAACAGCAACAG----CAACA----------------------A...............................................................................................................................................................................	23	20	0.60	12	0	12	0	0	0
.......................................................................................................................................................................................................................................................................................................................A------------------ATATCAACAGCAACAG----CAACA----------------------................................................................................................................................................................................	22	20	0.45	9	0	9	0	0	0
............................CAGGAACAGCAGCA---GCAACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................A------------------ATATCAACAGCAACAG----CAACA----------------------ACAGC...........................................................................................................................................................................	27	20	0.25	5	0	5	0	0	0
...................................................................................AC--------------------------------------------------CAGCAGC------AGGAACAGC-----------.................................................................................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	1	0
......................................................................................................................................................................................................................AACA---------------------------------------------------------ACAACAA------C----------AGCAGCA.......................................................................................................................................................................................................................................................	19	20	0.25	5	0	0	0	5	0
...............................................................................................................................................................................................................................................................................................................................................................AACA----------------------ACAGCAGCAGGAACAGCAACA...........................................................................................................................................................	25	4	0.25	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................A------------------ATATCAACAGCAACAG----CAACA----------------------AC..............................................................................................................................................................................	24	20	0.25	5	0	5	0	0	0
.......................................................................................................................................................................................................................................................................................................................A------------------ATATCAACAGCAACAG----CAACA----------------------ACAG............................................................................................................................................................................	26	20	0.20	4	0	3	0	1	0
........................................................................................................................................................................................................................................................................................................................................................AG----CAACA----------------------ACAGCAGCAGGAACAGCA..............................................................................................................................................................	25	5	0.20	1	0	1	0	0	0
........................................................................................................................................................................................................................CA---------------------------------------------------------ACAACAA------C----------AGCAGCAGCAACA------------------AT.............................................................................................................................................................................................................................	25	6	0.17	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AGCAACAG----CAACA----------------------ACAGCAGCAG......................................................................................................................................................................	23	20	0.15	3	0	3	0	0	0
.......................................................................................................................................................................................................................................................................................................................A------------------ATATCAACAGCAACAG----CAACA----------------------ACA.............................................................................................................................................................................	25	20	0.15	3	0	3	0	0	0
.........................................................................................................................................................................................................................A---------------------------------------------------------ACAACAA------C----------AGCAGCAGCAAC..................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	3	0
......................................................................................................................................................................................................................................................................................................................................................ACAG----CAACA----------------------ACAGCAGCAGG.....................................................................................................................................................................	20	8	0.13	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................A------------------ATATCAACAGCAACAG----CAACA----------------------ACAGCAG.........................................................................................................................................................................	29	19	0.11	2	0	2	0	0	0
.........................................................................................................................................................CAGC-----------A---AC---------------------------AA-CAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	2	0
.................................................................................................................................................................................................................GCAGCAACA---------------------------------------------------------ACAACAA------C----------AGC...........................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0
.......................................................................................................................................................................................................................................................................................................................A------------------ATATCAACAGCAACAG----CAACA----------------------ACAGCA..........................................................................................................................................................................	28	20	0.10	2	0	2	0	0	0
............................................................................................................................................................................................................................................................................................................................................ATCAACAGCAACAG----CAACA----------------------ACAG............................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAA------------------------------------------------------------------------------------CAGCAGCA-GC...........................................................	19	20	0.10	2	0	0	0	2	0
.....................................................................................................................................................................................................................CAACA---------------------------------------------------------ACAACAA------C----------AGCAGCAGC.....................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	2	0	0
....................................................................................................................................................................................................................................................................................................................AACA------------------ATATCAACAGCAACAG----CAACA----------------------................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
............................................................................................................................................................................................................................................................................................................................................ATCAACAGCAACAG----CAACA----------------------ACAGCA..........................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGGAACAGCAACA...........................................................................................................................................................	19	12	0.08	1	0	0	0	1	0
........................................................................................................................................AGCAGC------AGGAACAGC-----------A---AC---------------------------A...............................................................................................................................................................................................................................................................................................................................................................	19	12	0.08	1	0	0	0	1	0
................................AACAGCAGCA---GCAACAATATCAAC------------------AG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	16	0.06	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................AA------C----------AGCAGCAGCAACA------------------ATATCAACAG.....................................................................................................................................................................................................................	26	16	0.06	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................A------C----------AGCAGCAGCAACA------------------ATATCAAC.......................................................................................................................................................................................................................	23	17	0.06	1	0	1	0	0	0
.................................ACAGCAGCA---GCAACAATATCAAC------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	17	0.06	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AG----CAACA----------------------ACAGCAGCAGG.....................................................................................................................................................................	18	17	0.06	1	0	0	0	1	0
.....................................CAGCA---GCAACAATATCAAC------------------AGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	18	0.06	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................ATCAACAGCAACAG----CAACA----------------------ACAGCAGCAG......................................................................................................................................................................	29	18	0.06	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................CAGCAGCAACA------------------ATATCAACAGCAA..................................................................................................................................................................................................................	24	18	0.06	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................AGCAGCAACA------------------ATATCAACAG.....................................................................................................................................................................................................................	20	19	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................TATCAACAGCAACAG----CAACA----------------------ACAGCAG.........................................................................................................................................................................	27	19	0.05	1	0	1	0	0	0
......................................AGCA---GCAACAATATCAAC------------------AG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	19	0.05	1	0	1	0	0	0
.......................................................................................................................................................AACAGC-----------A---AC---------------------------AA-CAGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................AA-CAGCAGCAGCAACA---------------------------------------------------------ACAAC.................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAA------------------------------------------------------------------------------------CAGCAGCA-.............................................................	18	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................AACA------------------ATATCAACAGCAACAG----CAACA----------------------A...............................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................CAGCAACA---------------------------------------------------------ACAACAA------C----------AGCAGCA.......................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................CAACA---------------------------------------------------------ACAACAA------C----------AGCAGCAGCAA...................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................CAACA------------------ATATCAACAGCAACAG----CAA........................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CAACAG----CAACA----------------------ACAGCAGCAG......................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................ATCAACAGCAACAG----CAACA----------------------ACA.............................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AGCAACAG----CAACA----------------------ACAGCAGCA.......................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAA------------------------------------------------------------------------------------CAGCAGCA-GCA---.......................................................	22	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................................................GCAGCAACA---------------------------------------------------------ACAACAA------C----------AGCAGC........................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................GCAACA---------------------------------------------------------ACAACAA------C----------AGCAGCAGC.....................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................A---------------------------------------------------------ACAACAA------C----------AGCAGCAGCA....................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................A------------------ATATCAACAGCAACAG----CAACA----------------------T...............................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................GCAGCAGCAACA---------------------------------------------------------ACAACAA------C----------AGC...........................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................AGCAACA---------------------------------------------------------ACAACAA------C----------AGCAGCAGCAAC..................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................AA-CAGCAGCAGCAACA---------------------------------------------------------AC....................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................TATCAACAGCAACAG----CAACA----------------------ACAGC...........................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................AACA------------------ATATCAACAGCAACAG----CAA........................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................ATATCAACAGCAACAG----CAACA----------------------AC..............................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................C---------------------------AA-CAGCAGCAGCAACA---------------------------------------------------------ACAACAA------C----------..............................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................ATATCAACAGCAACAG----CAACA----------------------ACAGC...........................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................TATCAACAGCAACAG----CAACA----------------------ACA.............................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................ACA------------------ATATCAACAGCAACAG----CAACA----------------------................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................CA---------------------------------------------------------ACAACAA------C----------AGCAGCAGCAACA------------------A..............................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................AACA------------------ATATCAACAGCAACAG----CAAC.......................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0

dp5

CCGTCT----CCAGCGCC--------AGCGCCC------ACA---GCAG-----------------------------GCG------------------CTGCCA-CCAT------TCC-------C------GCCAAT------AG---------CCACACCA--GCA---CC------AGCACCAGTAG------C---AA-CA---------------------------------------------------------------------GCAACAG------C----------AACAACAACA---------A---TA------A----------------TAATAACA-------ACAACAGTACCA---CTGGGAATGGCACCG----------------------------------CCGGCAGCAG-------------------------------TCC-------CACCAACAGCAGC--T----------------------------------------------------------CC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................ATGGCACCG----------------------------------CCGGCAGCAG-------------------------------TCC-------C...........................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................CA---------------------------------------------------------------------GCAACAG------C----------AACAACAACA---------A---.......................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0

droPer2

TCAACA----CGACATTC--------AACAACA------ACA---GCAACAGTTGCCAA------------------AATAGTTA-----------------------------------------------TC---AT------AGTTATCACAGT-----------T---AT---------------------------CA-TAACAACAACAACA---------------------------------------------------------ACAATAA------C----------AACAATAACAATA------------------ACAACAATAACAACAA----CAACA----------------------ATAGCACCACAAACACCCCCAC------------------------------------------------------------------------------------CAATCAAA-ACA---A------------------------------------------------CAACAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................C--------AACAACA------ACA---GCAACAGTTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CAACAATAACAACAA----CAACA----------------------................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droAna3

CAACA-----CCAACTCCACCAGC--AACAACA------ACA---GCAC------CAGC------------------AGCA------------------CCGCCA-CCAC------GCC-------CGGCAATGCCAATACAGCTACC---------------------------------------------------------ACCAACAACAAC------------------------------------------------------------AATAACAA---C----------AACAACAACA---------A---TA------CTAATAACAACA---A-CAATAACA----------------------ACAACAACAACAGTAGTGGCAA---------------------------------------------------------------------------------------CAGC-G---AGAA------------------------------------------------GCGCAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................GC--AACAACA------ACA---GCAC------CAGC------------------AGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0

droBip1

CAACC-------------------ACAGCAGCAG---------------------------C---------------CA------------------CAGCACCA-CCGC----------------CAGCAGCAACAACAAC--------------------------A------------------ACAATACAAATCAGCT-CAATAATAACAA------------------------------------------------------------------------C----------AACAATAACA---------A---------------------TA----ATAATAACA----------------------ACAACAATAATAATAATAATAA----------TAGTA----------------------------------------------------------------------------------------------------AAGGACATCATTTGAGCACCACCGAGGACTTGCATTCGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCAACT------------------GCGGCTACAATGGCTGCG---GCGACATCAACAGCAAC---------------AA---CAACAGCGGCGGTTGC-----------------------------------------------AG---------CAACACTG--ACA----------------------------------------CCAGCAGCAGCAACAGCAGTT---------------------------------------------ACAACAA------C----------AACAGCAG---------------TTA---CAA---------TA----ACAACAGCA----------------------GTTACAACAAAAATAGTAGTTA----------CAACAACAG---------------AAGTTGCAGCAA--------------------------------------CAA--------C---A------------------------------------------------GCGCTA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAACA-------------------CCACC---------------------------------------------------------------------------A-CCAC----------------CAGCAATACCAACAACTCTAGTTCCAAC---AACAACA--ACA----------------------------------------ATAATAACAACAACACCAGCAACA------------------------------------------ACAATAA------C----------AACAATACAA---------A---------------------TA----ATAATAATA----------------------ACAACCATACGAATAATAATAA----------TAATAACAC-----------------------------------------------------------------------A-A----------CTAATCAAAAACAAGGACACCACTTGAGCACCACCG------------AAG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAACC-------------------ACAGCAGCAG---------------------------C---------------AA------------------CACCACCA-CCAC----------------CAGCAACACCAACAACTCTAGTTCCAAC---------A--ACA-------------------------------------AC---------------------------------------------------------------------AATAATAATAATAAC----AACAACAATAA------------------------------TAATA----ATAATAACA----------------------ACAACCATACAAATAATAATAA----------TAAC------------------------------------------------------------------------------A----------CGAATCAAAAACAAGGACACCACTTGAGCACCACCG--------------A	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAATC-------------------ACAACAACAAAGGCAACA---GACAC------------------------------------------------ATCACCACGCAC-----CGGCAAACAAGCAACAACGCCAACATC----------ACAAT----------------------------------------CAT-CA-CAGCAGCAACAGCA---------------------------------------------------------ACAACAA------C----------AGCAACAGCAACA------------------TCAGCAACTCAGGCAA----CAGCA----------------------ACAGCAACACCAACAGCAACAG----------------------------------------------------------------------------------------------CAATCACAGCAAATCAAG--CA----------------GCCATCGAGG------GC-GTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCGCCGATTGTCC-----------ATAACAACAG---------------------------CAACAACAGCAACAACAG--------------------------------------------------CAATATTTCTGCTTCTGA---------TTACACTG--TCG---CA---------------------A------A-CAACAGTACTAG------------------------------------------------------------------------C----------AATAATAACA---------ATAATAATAATAATAACAACAATA-----------------------------------------------ATAACAATAA----------TATTCACCCAAACCAGTTTG----------CTGCGG------------------------C-------CGCAAATATGAAC--TCA---A------------------------------------------------ATGCTG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAACC-------------------ACAGCAGCAG---------------------------C---------------AA------------------CACCACCA-CCAC----------------CAGCAACACCAACAACTCCAGTTCC------------------------------------------------------AACAACAACAAC---------------------------------------------------------------AATAATAAT----------AATAATAACAATAACAACA------------ACACGAATAATA----ATAATAATA----------------------ACAACCATACGAATAATAATAA----------T---------------------------------------------------------------------------------A----------CAAATCAAAAGCAAGGACACCACTTGAGCACCACCG---------AAGAAT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CCGCAGAGCAACC-----------ACAGCAGCAG---------------------------C---------------AA------------------CACCACCA-CCAC----------------CAGCAACACCAACAACTCCAGTTCGAACAAC-----------A---AC---------------------------AA-CAACAATAATAA------------------------------------------------------------------------T----------AATAACAACAACAACAACAA---------CACCAGTAATAACA----ATAATAACA----------------------ACAATCATACAAACAATAATAA----------TAAT------------------------------------------------------------------------------A----------C------AAAGCAAGGACACCACTTGAG---------------------CA	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTGCA-------------------GCACA---A---TCAGCATACGCTTCAT---------C---------------AG------------------C-----------------------------------AGCAGC------------------------AGC--TTCAGCAGCAGCAGCAGCAGCAG------TAC-GA-CAATACTGCGCCCA---------------------------------------------------------CCAACAA------CAA-TGCCAACCTTAATAACA---------------------A----------------TAATAACA-------ATAATAATACCGCTGGCAATCAAGCGGATAATAATG-------------------------------------G-------------------------------GCC-------AACGCTCAGCAAT--C-----------------------------TGCT---------------------TAGCTT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................AAGCGGATAATAATG-------------------------------------G-------------------------------GCC-------AACGCTCAGC..................................................................	29	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................TACGCTTCAT---------C---------------AG------------------C-----------------------------------AGCAGC------------------------AGC--TTC..............................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................AGCAGCAGCAGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TTCAGCAGCAGCAGCAGCAG.............................................................................................................................................................................................................................................................................................................................................................................	20	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................C--TTCAGCAGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................	20	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TCAGCAGCAGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GCAGCAGCAGCAGCAG------TA..................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TCAATT----CGGCTAGCA-----ACAACAACAATAA------------------------C---------------AA------------------CAACAACA-GCAC----------------CAGTAGCAACCACAAT--------------------------G------------------GCAGTGGAAACCA-CACAGCTGGCGGCGGT------------------------------------------------------------GGCAA------C----------AACAATAACA---------------------A----------------CAACAACA-------ACAACAATGCCGCCAGCTGCACCACA----------GTGGCGCTGGTCAATGGTAT---------------AAATGGCAGCGCCGCCAGTGTGACCATGTCCTCGGCC-------CACCACCAGCAACA-TCA---A------------------------------------------------TTGCTG

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

CAGGT-------------------GCAACAGCAACAACATCA---GCACCAGCACCAGG------------------TGCAACAG--------------------------------------------C---A---ACAGC---------------------AGC--ATCAGCAGCA------------------------G-CAGCAGCAGCAAC------------------------------------------------------------AGCAA------C----------AACAACAACAA------------------CAGCAACAACAACAACAA----CAACA----------------------ACAACAACAGGTGCAGCACCAA------------------------------------------------------------------------------------CAGCAGCA-GCA---A------------------------------------------------AAGCTT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................................................................................................................................C---A---ACAGC---------------------AGC--ATCAGCAGCA------------------------G-CAGC.........................................................................................................................................................................................................................................................................................................................................................	25	4	0.25	1	1	0	0	0
.................................................................................................................................................................................................................................................................................................................AACAA------------------CAGCAACAACAACAACAA----CA.........................................................................................................................................................................................................	25	6	0.17	1	1	0	0	0
...................................................................................AG--------------------------------------------C---A---ACAGC---------------------AGC--ATCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	1	0
............................................................................................................................................GC---------------------AGC--ATCAGCAGCA------------------------G-CAGCAGC......................................................................................................................................................................................................................................................................................................................................................	23	10	0.10	1	0	0	1	0
.....................................................................................................................................A---ACAGC---------------------AGC--ATCAGCAGCA------------------------...............................................................................................................................................................................................................................................................................................................................................................	19	14	0.07	1	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................GCACCAA------------------------------------------------------------------------------------CAGCAGCA-GCA---.......................................................	18	17	0.06	1	0	0	0	1
........................................................................................................................................................................ATCAGCAGCA------------------------G-CAGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1
.....................................................................................................................................................................C--ATCAGCAGCA------------------------G-CAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1
.................................................................................................................................................................................A------------------------G-CAGCAGCAGCAAC------------------------------------------------------------AGCA................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1
..........................................................................................................................................................................................................G-CAGCAGCAGCAAC------------------------------------------------------------AGCAA------C----------A.............................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0

droYak3

GG------CGGCAGTCCTGGCAGC--AACAACAA------CA---ACAA------------C------AGCAAT---AA-----------------------------------------------------TAATAATA--------------------------------------------------------------A-CAATAACATACTCA------------ATCACAACAATCTCAATATCATTATCAATAACCATGCCTCCCTCAACAACAA------C----------AACAATAATAA------------------TAGTAATAATAATAACA-------ACAACAATCC--------------AGCCACA-------------------------------------------------------------------------------------------------------------CCAAATG------------------------------------------------CCAATC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................ATA--------------------------------------------------------------A-CAATAACATACTCA------------ATC................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CCAGC---------------------AACAACAA------T---------------------------------------------------------AACAACA-ATAC----------------CAGCACCACCAACA--------------------------------------------------------------A-CAACAATACCAGC----------------------------------------------------------------------------------AATAACAACA---------ACAACA---------------------A----CAACA----------ACAGCACCA---CGAACAACAACAATAATAATAA----------TGTTAAAACAAAGCCCGTGGACACGAG-------------------------------TCCCTACTTGACCCCCGA---------G---A------------------------------------------------ATCTCA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_20298

scaffold_13049:17611666-17611761 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads