ID:

dvi_20292

 Coordinate:

scaffold_13049:17584373-17584523 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.8 -19.8 -19.7 -19.7

Flybase annnotation

CDS [Dvir\GJ13715-cds]; exon [dvir_GLEANR_13585:2]; intron [Dvir\GJ13715-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGTCATACACTCACGCGCACACACACACACACCCACACATGCCTGCACACATGGACTTGTTCGACTTTGACTGCGATTGGAGTGAATCATCCGCTTATTTATAAACAATTGGCCCGTGCGGGCATTTGGCGTGTTCGTTCGGCCTTTGCTAGTCACTGAAGACTGAAGACAAAACTTATGAATTGCTTTTGATATTTGCAGCAGGCCTTTGGATTCGAACCGGACATGGACATGGATATGGATAATATGTT
*****************************************************************.............((..(((((.((.((((................((((....))))....)))).))..)))))..))********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M061
embryo
 M028
head
 M027
male body		 SRR060681
Argx9_testes_total
 V116
male body		 SRR060671
9x160_males_carcasses_total
 SRR060655
9x160_testes_total
 SRR060664
9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060683
160_testes_total
 SRR060663
160_0-2h_embryos_total
 V053
head
 SRR060682
9x140_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060689
160x9_testes_total
 SRR060666
160_males_carcasses_total
...............................................................................................................................................................................................................................ACATGGACATGGGTATGGGTCAT..... 23 3 2 3.50 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTCAGCAGGCCTTTGGATTCGAACC.............................. 25 1 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ACATGGACATGGGTATGG.......... 18 1 4 1.25 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGCAGCAGGCCTTTGGATTCG.................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AGGCCTTTGGATTCGAACCGG............................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GGCCTTTGGATTCGAACCGGACATG....................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TTTGCTGGTCACTGAAGACTG...................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TTTGGCGTGTTCGTTCGGCCT.......................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CCTTTGGATTCGAACCGGAC.......................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ATTTGGCGTGTTCGTTCGGCC........................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................TTTGACTGCGATTGGAGTGA...................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TTGACTGCGATTGGAGTGAAT.................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ATTTGGCGTGTTCGTTCGGC............................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ACCGGACATGGACATGGATAT............ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................CTCTGACTGCGATTGGAGTGA...................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TTCAGGCCTTTGGATTCGAACC.............................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................CGATTGGAGTGAATCATCCGCTT........................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GCTTATTTATAAACAATTGGCCCGTGC.................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTGCAGCAGGCCTTTGGATTC................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CATGGACATGGATATGGGTCAT..... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...CATACACTCACGCGCACACACAC................................................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GTTCGGCCTTTGCTAGTCACT.............................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CGGACATGGACATGGATATG........... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ACATGGACATGGGTATGGGTCA...... 22 3 6 0.83 5 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0
...............................................................................................................................................................AGACTGAAGAAAAAACTT.......................................................................... 18 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ACATGGACATGGGTATGGGTC....... 21 3 15 0.47 7 4 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................................ACATGGACATGGGTATGGGT........ 20 2 7 0.29 2 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................ATTGGAGTGAAACATGCGCTC........................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................GACATGAACCAGGATATGGAT........ 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................GGACATGGGTATGGGTCATA.... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................GTTCGACTCTGAGTGCGA............................................................................................................................................................................... 18 2 13 0.15 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0
.......................................................................................................................................................GTGACTGAATACGGAAGAC................................................................................. 19 3 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............CGCACACACACACACACC.......................................................................................................................................................................................................................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................CCAGACTGAAGAAAAAACTT.......................................................................... 20 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACAGTATGTGAGTGCGCGTGTGTGTGTGTGTGGGTGTGTACGGACGTGTGTACCTGAACAAGCTGAAACTGACGCTAACCTCACTTAGTAGGCGAATAAATATTTGTTAACCGGGCACGCCCGTAAACCGCACAAGCAAGCCGGAAACGATCAGTGACTTCTGACTTCTGTTTTGAATACTTAACGAAAACTATAAACGTCGTCCGGAAACCTAAGCTTGGCCTGTACCTGTACCTATACCTATTATACAA
**********************************************************************************************************.............((..(((((.((.((((................((((....))))....)))).))..)))))..))***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060673
9_ovaries_total
 SRR060680
 9xArg_testes_total
 M027
male body		 SRR060658
140_ovaries_total
 SRR060672
9x160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 V116
male body		 SRR060665
9_females_carcasses_total
 SRR060670
9_testes_total
 M061
embryo
 GSM1528803
follicle cells
..............................TGGGTGGGTACGGACGTGT.......................................................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................GGAAACGATCAGTGACTTCTG........................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CCGGGAACGGTCAGTGACTTC.......................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................CGTGTGTACCTGAACAAGCTG.......................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GTCGTCCGGGAACCTAAGCTT................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................AACTGACGCTAACCTCACTT..................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................GTACGGACGTGTGTACCTGA.................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................GGACGTGTGTACCTGGACGAG............................................................................................................................................................................................. 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TCTGACTTCTGTTTTGAATAC....................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................GGTGTGTACGGACGTGTGTAC...................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GCTTGGCCTGTACCTGTACCT............... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................GTAGGCGAATAAATATTTGTT............................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................TGTGTGGGTGTGTACGGACGT............................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................TGTGTACGGACGTGTGTACCTGA.................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................CGTGGTCCGGTAAGCTAAGC.................................. 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................CCTAAGCTTGGCCACTAC....................... 18 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................CCGGGAACGGTCAGTGACTTA.......................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GAGGAGGCGAATAAATAT.................................................................................................................................................... 18 2 13 0.15 2 0 0 0 0 0 0 0 0 0 0 2 0 0
.....................................................................................................................................................................................................................AAGCTCGGCCTATACCTG.................... 18 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................................TCCGCAATCCTATGCTTGG.............................. 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................................TGGACCTGTACCTATCCAT......... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TCCCCCAACCTAAGCTTGG.............................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:17584323-17584573 + dvi_20292 TGTC-----ATACACTCACGCGCACACACACACACACCCACACATGCCTG--------------------CACACATGGACTTGTTCG--ACTTTGACTGCGATTGGAG---TGAATCATCCGCTTATTTATAAACAATTGGCCCGTGCGGGCATT-----------------------------------------------------------------------------------TGGCGTGTTCGTTCGGCCTTTG--------------------------------------------------CTAGTCACTGAAGACTG-AAGACAAAAC------------TTATGAAT-TGC------TTT---TGATA---TTTGCAGCAGGC---CTTTGGATTCGAACCGGACATGGACATGGATATGGATAATATGTT
droMoj3 scaffold_6680:22623144-22623461 + dmo_2564 TGTC-----ATAAGCCCACACACAGATACACAGACACACAGACACGCAGACACACAGACACGCAGACACACAAACATAGACATGTTAGCCACTTTGACTGCGATTGGCA---TGAATCATCCGCTTATTTGTGACC-----------------------------------------------------ATAAATGTATAGATGAACCTGTATACAACAACGAAGCGTT----------T-GCGCCTTAGCACGACCTTTGGCTCTCTGCAACAATAAGCAATTAATTGTTTTCGTT------------------TTCCA-----TTGC----------TCATTG------------GT-CATTTTGCATTTTTACA----CTTCCACAGCAGCC---CTTTGGATTTGAACCGGACATGGACATGGACATGGAAAATATGTT
droGri2 scaffold_15110:14597662-14597883 - TGTC-----ATACACTCACACACACACACACA-------------------------------------------------------------------GCAGT--GTG---TG-------------------AATCATACGCTTATAAATATAAACA--GTT-------TTC------------------------------------------------GCCCACTTTGCGCTTGATTTTT-----------------GGTCGTGT------------------TTTTTTTTGTTTTCTTTGTTTTTTTTTTTTTGCTTTAGAC-------------TAAAAATAATTTGT-----T-TGA------ATT----G-GTTTTGTTGCAGCCGCC---CTTTGGATTTGAAGCCGATATGGACATGGATATGGATAATATGTT
droWil2 scf2_1100000004511:783477-783543 - CTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--GGCGC---TTTGCAGTCGAC---TTTTGGTTTCGAGCCGGACATGGATATGGATATGGATAATATGTT
dp5 XR_group8:4036693-4036857 - TGA----------------------------------------------------------------------------------------------------------------GTCATGTTGTTATTTATAAACAATTCGCCCACCGAGCCAAACA--CTA-------------------------------------------------------------CACTTTACACTCGCTTGTC-----------------GCACTTGT---------------------------------------------------T-----CTCA----------TAACAACTCTCGAT-----C-TGA------TCT----G-TGATTTCAGCAGCCGAC---CTTTGGATTTGAACCCGACATGGATATGGACATGGACAACATGTT
droPer2 scaffold_29:268801-268965 - TGA----------------------------------------------------------------------------------------------------------------GTCATGTTGTTATTTATAAACAATTCGCCCACCGAGCCAAACA--CTA-------------------------------------------------------------CACTTTACACTCGCTTGTC-----------------GCACTTGT---------------------------------------------------T-----CTCA----------TAACAACTCTCGAT-----C-TGA------TCT----G-TGATTTCAGCAGCCGAC---CTTTGGATTTGAACCCGACATGGATATGGACATGGACAACATGTT
droAna3 scaffold_13337:21959793-21959937 - TT----------------------------------------------------------------------------------------------------------------------------ATTTATAAACAATTCGCCCATAGCGCCAAACAATTTGTACTCTAGCC---------------------------------------------------------------GCCCACC-----------------ACACTGCC---------------------------------------------------T-----CTGC----------TCACGA------------AT-CCC------TCTC--TGTT----TTCACAGTCAAC---CTTTGGATTTGAACCGGACATGGACATGGATATGGACAACATGTT
droBip1 scf7180000396730:430062-430261 - TGCGCGCAAATACAAGTACATATCGACA----------------------------------------A--------------------------CACAACAGCGGGGC---TTACTCACCCTGTTATTTATAAACAATTCGTCCATAGCGCCAAACAAATTGTACTTTAGCC---------------------------------------------------------------GCCCACC-----------------A-----------------------------------------------------GTGCCA-----GTGC----------TCACGA------------AT-CTC------TCTCTCCGTT----CTTACAGTCAAC---CTTTGGATTTGAACCGGACATGGACATGGACATGGATAACATGTT
droKik1 scf7180000302808:539400-539602 - TTTGCCCA------------CACAAACACAC---------------------------------------------------------------------CGCCTGGGGCTCTGAGTCAC-CTGTTATTTATAAACAATTCGCCCACTTTGCCAAACAATTTGCACTTTTCCTGCCCTCCCTTACGTTCGTACTTATAAAGCTCAACCTCTCT-------------------------------------C-----------------------------------------------------------------------------------------------TCTCTCT-----CTGTC------TCTC--TG-TG---ATTGCAGCCGAC---CTTTGGATTCGAACCGGACATGG------ACATGGATAATATGTT
droFic1 scf7180000454048:225709-225765 - CTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCG---ATTGCAGCCGTC---TTTTGGATTTGAACCGAGCATGG------ACATGGACAACATGTT
droEle1 scf7180000491255:1922747-1922807 + TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCG---ATTGCAGCCGACACACTTTGGATTCGAACCGAACATGG------ACATGGACAACATGTT
droRho1 scf7180000779509:69280-69329 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGCCGAC---CTTTGGATTCGAACCGAACATGG------ACATGGACAACATGTT
droBia1 scf7180000302428:1314718-1314767 - T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGCCGAC---CTTTGGATTCGAACCGAACATGG------ACATGGACAACATGTT
droTak1 scf7180000415332:11280-11336 - CTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCG---ATTGCAGCCGAC---CTTTGGATTTGAACCCAACATGG------ACATGGACAACATGTT
droEug1 scf7180000409121:19203-19292 + TCACCAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTC-AAGTTTG----------------TACTTAT-TAC------TCCC--TTCTT---ATTCCAGCCGAC---CTTTGGATTTGAACCGAACATGG------ACATGGACAACATGTT
dm3 chr3L:13474108-13474179 + AT------------------------------------------------------------------------------------------------------------------------------TTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-TAC------TCTC--TGTTG---ATAGCAGCCGAC---CTTTGGATTCGAACCGAACATGG------ACATGGACAACATGTT
droSim2 3l:13178000-13178070 + TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAT-TGC------TCTC--TGTTG---ATTGCAGCCGAC---CTTTGGATTCGAACCGAACATGG------ACATGGACAACATGTT
droSec2 scaffold_0:5649546-5649621 + AAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA------------TTAATAAT-TGC------TCTC--TGTTG---ATTGCAGCCGAC---TTTTGGATTCGAACCGAACATGG------ACATGGACAACATGTT
droYak3 3L:13576792-13576868 + CAA----------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA------------TTAATAAT-TGC------TCTC--TGCTG---ATTGCAGCCGAC---CTTCGGATTCGAACCTAACATGG------ACATGGACAACATGTT
droEre2 scaffold_4784:13486928-13487032 + CTC----------------------------------------------------------------------------------------------------------------------TTCTTAGTTAAAAAAGATTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTAATAA------------TTAATAAT-TGC------TCTC--GGTTG---GTTGCAGCCGAC---CTTTGGATTCGAACCGAACATGG------ACATGGACAACATGTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGTC-----ATACACTCACGCGCACACACACACACACCCACACATGCCTG--------------------CACACATGGACTTGTTCG--ACTTTGACTGCGATTGGAG---TGAATCATCCGCTTATTTATAAACAATTGGCCCGTGCGGGCATT-----------------------------------------------------------------------------------TGGCGTGTTCGTTCGGCCTTTG--------------------------------------------------CTAGTCACTGAAGACTG-AAGACAAAAC------------TTATGAAT-TGC------TTT---TGATA---TTTGCAGCAGGC---CTTTGGATTCGAACCGGACATGGACATGGATATGGATAATATGTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAGGC---CTTTGGATTCG..................................2111.001000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AGGC---CTTTGGATTCGAACCGG............................2111.001100000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................GGC---CTTTGGATTCGAACCGGACATG.......................2511.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TT-----------------------------------------------------------------------------------TGGCGTGTTCGTTCGGCCT.........................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................C---CTTTGGATTCGAACCGGAC..........................2011.001000001000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................ATT-----------------------------------------------------------------------------------TGGCGTGTTCGTTCGGCC..........................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................TTTGACTGCGATTGGAG---TGA........................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................TTGACTGCGATTGGAG---TGAAT......................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................ATT-----------------------------------------------------------------------------------TGGCGTGTTCGTTCGGC...........................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGACATGGACATGGATAT............2111.001000000000000000000100000000000000000000000000000000000000000000
....................................................................................................CGATTGGAG---TGAATCATCCGCTT.............................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................GCTTATTTATAAACAATTGGCCCGTGC......................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGCAGGC---CTTTGGATTC...................................2111.001000000000000000100000000000000000000000000000000000000000000000
...C-----ATACACTCACGCGCACACACAC............................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................GTTCGGCCTTTG--------------------------------------------------CTAGTCACT...........................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CGGACATGGACATGGATATG...........2011.001010000000000000000000000000000000000000000000000000000000000000
....................CGCACACACACACACACC.....................................................................................................................................................................................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
TGTC-----ATAAGCCCACACACAGATACACAGACACACAGACACGCAGACACACAGACACGCAGACACACAAACATAGACATGTTAGCCACTTTGACTGCGATTGGCA---TGAATCATCCGCTTATTTGTGACC-----------------------------------------------------ATAAATGTATAGATGAACCTGTATACAACAACGAAGCGTT----------T-GCGCCTTAGCACGACCTTTGGCTCTCTGCAACAATAAGCAATTAATTGTTTTCGTT------------------TTCCA-----TTGC----------TCATTG------------GT-CATTTTGCATTTTTACA----CTTCCACAGCAGCC---CTTTGGATTTGAACCGGACATGGACATGGACATGGAAAATATGTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................GTTAGCCACTTTGACTGCGA....................................................................................................................................................................................................................................................................................................................................................2012.002200000
................................................................................................................................................................................................AATGTATAGATGAACCTGT........................................................................................................................................................................................................................................1911.001100000
...............................................................................................................................................................................................................................................................................................................................A-----TTGC----------TCATTG------------GT-CATTTTG............................................................................2011.001100000
......................................................................................................................................................................................................................................................................................................................................TGC----------TCATTG------------GT-CATTTTGCATTTT......................................................................2411.001100000
............................................CGCAGACACACAGACACGCAGAC........................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
....................................................................................................................................GACC-----------------------------------------------------ATAAATGTATAGATGAACCTG.........................................................................................................................................................................................................................................2511.001100000
...........................................................................................................................................................................................................GAACCTGTATACAACAACGAA...........................................................................................................................................................................................................................2111.001100000
..................................................................................................................................GTGACC-----------------------------------------------------ATAAATGTATAGAT................................................................................................................................................................................................................................................2011.001100000
.........................................................................................CACTTTGACTGCGATTGGCA---TGAATCATC..................................................................................................................................................................................................................................................................................................................................2911.001000001
........................................................................................................................................................................................................................................................AGCACGACCTTTGGCTCTCTG..............................................................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................TCCACAGCAGCC---CTTTGGATT....................................2111.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCAGCC---CTTTGGATTTGAACCGGAC..........................2511.001100000
................................................................................................................................................................................................................TGTATACAACAACGAAGCGTT----------T-GCG.......................................................................................................................................................................................................2511.001100000
....................................................................................................................................................................................................................................................CCTTAGCACGACCTTTGGCTCTCTGCA............................................................................................................................................................................2711.001100000
.....................................................................................................................................................................................................................................................................GCTCTCTGCAACAATAAGC...................................................................................................................................................................1911.001100000
.....................................................................................................................................................................................................................................................................................AGCAATTAATTGTTTTCGTT------------------TTCCA-----TT....................................................................................................................2711.001100000
............................................................................................................................................................................................................AACCTGTATACAACAACGAAGCGTT----------T-G.........................................................................................................................................................................................................2711.001000001
............................................................................................................A---TGAATCATCCGCTTATTTG........................................................................................................................................................................................................................................................................................................................2011.001100000
...................................................................................................................................................................................................................ATACAACAACGAAGCGTT----------T-G.........................................................................................................................................................................................................2011.001000001
................CACACACAGATACACAGACAC......................................................................................................................................................................................................................................................................................................................................................................................................................2130.331100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGACATGGACATGGA.........19200.051000100
droGri2
TGTC-----ATACACTCACACACACACACACA-------------------------------------------------------------------GCAGT--GTG---TG-------------------AATCATACGCTTATAAATATAAACA--GTT-------TTC------------------------------------------------GCCCACTTTGCGCTTGATTTTT-----------------GGTCGTGT------------------TTTTTTTTGTTTTCTTTGTTTTTTTTTTTTTGCTTTAGAC-------------TAAAAATAATTTGT-----T-TGA------ATT----G-GTTTTGTTGCAGCCGCC---CTTTGGATTTGAAGCCGATATGGACATGGATATGGATAATATGTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGAAGCCGATATGGACA...................2011.00110
droWil2
CTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--GGCGC---TTTGCAGTCGAC---TTTTGGTTTCGAGCCGGACATGGATATGGATATGGATAATATGTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATATGGATATGGATAAT.....2111.00100001
.......................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCCGGACATGGATATGGATAT............2411.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGAGCCGGACATGGAT....................2011.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATATGGATAATATGTT2011.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................CGAC---TTTTGGTTTCGAGCCGGACATGGA.....................2811.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................GAC---TTTTGGTTTCGAGCCGGA...........................2111.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................C---TTTTGGTTTCGAGCCGGACAT........................2211.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................AGTCGAC---TTTTGGTTTCGAGCCGG............................2411.00100100
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAGCCGGACATGGATATGGATATGG..........2811.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGAGCCGGACATGGA.....................1911.00100100
dp5
TGA----------------------------------------------------------------------------------------------------------------GTCATGTTGTTATTTATAAACAATTCGCCCACCGAGCCAAACA--CTA-------------------------------------------------------------CACTTTACACTCGCTTGTC-----------------GCACTTGT---------------------------------------------------T-----CTCA----------TAACAACTCTCGAT-----C-TGA------TCT----G-TGATTTCAGCAGCCGAC---CTTTGGATTTGAACCCGACATGGATATGGACATGGACAACATGTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................AC---CTTTGGATTTGAACCCGA...........................2011.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................GAC---CTTTGGATTTGAACCC.............................1911.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................C---CTTTGGATTTGAACCCGAC..........................2011.0010100000000
.....................................................................................................................................................................................................................................................................CACTTGT---------------------------------------------------T-----CTCA----------TAACAACTCTCGAT-----C-TG.................................................................................2911.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TGGATTTGAACCCGACATGGATATG.................2511.0010010000000
.......................................................................................................................................................................................................................................................................................................................................................AACTCTCGAT-----C-TGA------TCT----G-TGATTTCAG........................................................2711.0010100000000
............................................................................................................................................................................................................................................................................................................................................................TCGAT-----C-TGA------TCT----G-TGATTTCAG........................................................2211.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGACATGGACAACATG..2011.0010000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................ACCCGACATGGATATGGA...............1811.0010100000000
droPer2
TGA----------------------------------------------------------------------------------------------------------------GTCATGTTGTTATTTATAAACAATTCGCCCACCGAGCCAAACA--CTA-------------------------------------------------------------CACTTTACACTCGCTTGTC-----------------GCACTTGT---------------------------------------------------T-----CTCA----------TAACAACTCTCGAT-----C-TGA------TCT----G-TGATTTCAGCAGCCGAC---CTTTGGATTTGAACCCGACATGGATATGGACATGGACAACATGTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................CGAC---CTTTGGATTTGAACCC.............................2015.005500000
.......................................................................................................................................................................................................................................................................................................................................................................................................CGAC---CTTTGGATTTGAACCCGACATGG......................2712.002200000
........................................................................................................................................................................................................................................................................................................................................................................................................................GAACCCGACATGGATATGGA...............2012.002020000
...................................................................................................................................................................................................................................TTTACACTCGCTTGTC-----------------GCACT..................................................................................................................................................................................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................TTTCAGCAGCCGAC---CTTTGGATTT...................................2411.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCCGAC---CTTTGGATTTGAACCC.............................2211.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AACCCGACATGGATATGGAC..............2011.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGACATGGACAACAT...1911.001010000
................................................................................................................................................................CTA-------------------------------------------------------------CACTTTACACTCGCTTGTC-----------------.......................................................................................................................................................................................2211.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGAACCCGACATGGATATGGAC..............2511.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................GAC---CTTTGGATTTGAACCC.............................1911.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................CGAC---CTTTGGATTTGAACC..............................1911.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAC---CTTTGGATTTGAACCCGAC..........................2611.001100000
........................................................................................................................................................................................................................................................................................................................................................ACTCTCGAT-----C-TGA------TCT----G-TGATTTC..........................................................2411.001010000
..........................................................................................................................................................................................................................................................................................................................................................TCTCGAT-----C-TGA------TCT----G-TGATTTCAGCAG.....................................................2711.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................AACCCGACATGGATATGGACA.............2111.001010000
droAna3
TT----------------------------------------------------------------------------------------------------------------------------ATTTATAAACAATTCGCCCATAGCGCCAAACAATTTGTACTCTAGCC---------------------------------------------------------------GCCCACC-----------------ACACTGCC---------------------------------------------------T-----CTGC----------TCACGA------------AT-CCC------TCTC--TGTT----TTCACAGTCAAC---CTTTGGATTTGAACCGGACATGGACATGGATATGGACAACATGTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................CAAC---CTTTGGATTTGAACCGGACATGGA.....................2811.001000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGACATGGATATGGA.........1920.501100000
droBip1
TGCGCGCAAATACAAGTACATATCGACA----------------------------------------A--------------------------CACAACAGCGGGGC---TTACTCACCCTGTTATTTATAAACAATTCGTCCATAGCGCCAAACAAATTGTACTTTAGCC---------------------------------------------------------------GCCCACC-----------------A-----------------------------------------------------GTGCCA-----GTGC----------TCACGA------------AT-CTC------TCTCTCCGTT----CTTACAGTCAAC---CTTTGGATTTGAACCGGACATGGACATGGACATGGATAACATGTTSizeHit CountTotal NormTotal
No Reads
droKik1
TTTGCCCA------------CACAAACACAC---------------------------------------------------------------------CGCCTGGGGCTCTGAGTCAC-CTGTTATTTATAAACAATTCGCCCACTTTGCCAAACAATTTGCACTTTTCCTGCCCTCCCTTACGTTCGTACTTATAAAGCTCAACCTCTCT-------------------------------------C-----------------------------------------------------------------------------------------------TCTCTCT-----CTGTC------TCTC--TG-TG---ATTGCAGCCGAC---CTTTGGATTCGAACCGGACATGG------ACATGGATAATATGTTSizeHit CountTotal NormTotal
No Reads
droFic1
CTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCG---ATTGCAGCCGTC---TTTTGGATTTGAACCGAGCATGG------ACATGGACAACATGTTSizeHit CountTotal NormTotal
No Reads
droEle1
TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCG---ATTGCAGCCGACACACTTTGGATTCGAACCGAACATGG------ACATGGACAACATGTTSizeHit CountTotal NormTotal
No Reads
droRho1
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGCCGAC---CTTTGGATTCGAACCGAACATGG------ACATGGACAACATGTTSizeHit CountTotal NormTotal
No Reads
droBia1
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGCCGAC---CTTTGGATTCGAACCGAACATGG------ACATGGACAACATGTTSizeHit CountTotal NormTotal
No Reads
droTak1
CTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCG---ATTGCAGCCGAC---CTTTGGATTTGAACCCAACATGG------ACATGGACAACATGTTSizeHit CountTotal NormTotal
No Reads
droEug1
TCACCAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTC-AAGTTTG----------------TACTTAT-TAC------TCCC--TTCTT---ATTCCAGCCGAC---CTTTGGATTTGAACCGAACATGG------ACATGGACAACATGTTSizeHit CountTotal NormTotal
No Reads
dm3
AT------------------------------------------------------------------------------------------------------------------------------TTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-TAC------TCTC--TGTTG---ATAGCAGCCGAC---CTTTGGATTCGAACCGAACATGG------ACATGGACAACATGTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................AC---CTTTGGATTCGAACCGAACATGG------A...............2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CGAC---CTTTGGATTCGAACCGAA...........................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAC---CTTTGGATTCGAACCG.............................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................T-TAC------TCTC--TGTTG---ATAGCAG.....................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................GTTG---ATAGCAGCCGAC---CTTTGGA......................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................TCTC--TGTTG---ATAGCAGCCGAC---CTTT.........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TAC------TCTC--TGTTG---ATAGCAG.....................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.T------------------------------------------------------------------------------------------------------------------------------TTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-TAC------TCTC--TGTTG---............................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................TC--TGTTG---ATAGCAGCCGAC---CTTTGGATT....................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................GCAGCCGAC---CTTTGGATTCGAACCG.............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAC---CTTTGGATTCGAACCGAACAT........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TTTGGATTCGAACCGAAC..........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TCGAACCGAACATGG------ACAT............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCCGAC---CTTTGGATTCGAACCGAACATGG------A...............3011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-TAC------TCTC--TGTTG---A...........................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCCGAC---CTTTGGATTCGAACCGAACATG.......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-TAC------TCTC--TGTTG---A...........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAACCGAACATGG------ACATGGACAACA....2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCCGAC---CTTTGGATTCGAACCG.............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................CTC--TGTTG---ATAGCAGCCGAC---.............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TCGAACCGAACATGG------ACATGGACAAC.....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAC---CTTTGGATTCGAACCGA............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GAACATGG------ACATGGACAAC.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................AT-TAC------TCTC--TGTTG---ATAGCAGCCGA.................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAC---CTTTGGATTCGAACC..............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TGTTG---ATAGCAGCCGAC---CTTTGGA......................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAACCGAACATGG------ACATG...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-TAC------TCTC--TGTTG---ATAGCAG.....................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................AC------TCTC--TGTTG---ATAGCAG.....................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CGAACATGG------ACATGGATC.......18160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAT-TGC------TCTC--TGTTG---ATTGCAGCCGAC---CTTTGGATTCGAACCGAACATGG------ACATGGACAACATGTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATGG------ACATGGACAACATG..1814.00412100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CGAC---CTTTGGATTCGAACC..............................1913.00301200000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................GAACCGAACATGG------ACATGGA.........2012.00220000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AC---CTTTGGATTCGAACCG.............................1812.00220000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCCGAC---CTTTGGATTCGAAC...............................2012.00200200000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CGAC---CTTTGGATTCGAACCGAA...........................2211.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAC---CTTTGGATTCGA.................................1911.00100000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................GAACCGAACATGG------ACATGGACAACAT...2611.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGATTCGAACCGAACAT........................2111.00100001000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................CAGCCGAC---CTTTGGATTCGAACCG.............................2411.00101000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATTCGAACCGAACATGG------A...............2211.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................GAC---CTTTGGATTCGAACC..............................1811.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................GAACCGAACATGG------ACATG...........1811.00110000000000000000
droSec2
AAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA------------TTAATAAT-TGC------TCTC--TGTTG---ATTGCAGCCGAC---TTTTGGATTCGAACCGAACATGG------ACATGGACAACATGTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAC---TTTTGGATTCGAACCGAAC..........................2611.0010100
..................................................................................................................................................................................................................................................................................................................................................................ATAAT-TGC------TCTC--TGTTG---ATTG........................................................2111.0011000
droYak3
CAA----------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA------------TTAATAAT-TGC------TCTC--TGCTG---ATTGCAGCCGAC---CTTCGGATTCGAACCTAACATGG------ACATGGACAACATGTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGAACCTAACATGG------A...............1912.00202000000000
...................................................................................................................................................................................................................................................................................................................................................................TAAT-TGC------TCTC--TGCTG---ATTG........................................................2011.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTAACATGG------ACATGGACAACAT...2611.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAC---CTTCGGATTCGAAC...............................2111.00100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CGAC---CTTCGGATTCGAAC...............................1811.00110000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AACCTAACATGG------ACATGGACAACAT...2511.00101000000000
droEre2
CTC----------------------------------------------------------------------------------------------------------------------TTCTTAGTTAAAAAAGATTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTAATAA------------TTAATAAT-TGC------TCTC--GGTTG---GTTGCAGCCGAC---CTTTGGATTCGAACCGAACATGG------ACATGGACAACATGTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................AT-TGC------TCTC--GGTTG---GTTGCAG.....................................................2112.0021000100
.........................................................................................................................................................................................................................................................................................................................................................................GC------TCTC--GGTTG---GTTGCAG.....................................................1812.0022000000
......................................................................................................................................................................................................................................................................................................................................................................T-TGC------TCTC--GGTTG---GTTGCAGCCGAC---CTT..........................................2811.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AACCGAACATGG------ACATGGACA.......2111.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................AT-TGC------TCTC--GGTTG---GTTGC.......................................................1911.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................GAC---CTTTGGATTCGAACCG.............................1911.0010000100
........................................................................................................................................................................................................................................................................................................................................................................TGC------TCTC--GGTTG---GTTGCAGCC...................................................2111.0010000100
....................................................................................................................................................................................................................................................................................................................................................................AAT-TGC------TCTC--GGTTG---GTTGCAG.....................................................2211.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAC---CTTTGGATTCGAA................................2011.0010000100
..................................................................................................................................................................................................................................................................................................................................................A------------TTAATAAT-TGC------TCTC--GGTTG---GTTGCAG.....................................................2811.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................GGATTCGAACCGAACATGG------ACATGG..........2511.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................GAC---CTTTGGATTCGAACCGAAC..........................2211.0010000100
...............................................................................................................................................................................................................................................................................................................................................................TTAATAAT-TGC------TCTC--GGTTG---GTTG........................................................2411.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................CGAC---CTTTGGATTCGAACCGAACATGG------A...............2811.0011000000
......................................................................................................................................................................................................................................................................................................................................................................T-TGC------TCTC--GGTTG---GTTGCAG.....................................................2011.0010001000
....................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAC---CTTTGGATTCGAACCG.............................2311.0011000000
........................................................................................................................................................................................................................................................................................................................................................................TGC------TCTC--GGTTG---GTTGCAG.....................................................1911.0010000100
..................................................................................................................................................................................................................................................................................................................................................A------------TTAATAAT-TGC------TCTC--GGTTG---GTTG........................................................2511.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................CGAACCGAACATGG------ACATGGACAACAT...2711.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAACCGAACATGG------ACATGGACAACAT...2911.0011000000
....................................................................................................................................................................................................................................................................................................................................................................AAT-TGC------TCTC--GGTTG---GTTG........................................................1911.0010000100

Generated: 05/16/2015 at 10:09 PM