ID:

dvi_20254

 Coordinate:

scaffold_13049:16910153-16910303 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ11665-cds]; exon [dvir_GLEANR_11688:2]; intron [Dvir\GJ11665-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##############################--------------------
CTGTGTAGCTCTGTATGTGTGTGGTTAATGTATCTTAAATGAGAAAACGTGTCCGTGACTGTGCTTACCTTTTAATGCATTTAAATCAGCCACTGCGTCATTAGGTTCAGCTGTTCTTGAGGGCGAGCTTAATGCAAATAATTTAGTAGACAATGTGAAAATAGCCGGAATATCTAAAAATGTCATTAAATACCTTTACAGGAGACCATAATGGACTTCACCATCCCATGATAACGGGATGTGTTGCCTTA
**************************************************........(((((.......((((((((((((....(((...)))...((((((((((.(((.((...)).)))))))))))))............((((.....((........)).....)))).))))).)))))))......)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060659
Argentina_testes_total
 SRR060655
9x160_testes_total
 SRR060667
160_females_carcasses_total
 V047
embryo
 SRR060658
140_ovaries_total
 SRR060672
9x160_females_carcasses_total
..................................................................................................................................................................................................TTTACAGTAGACCATGCTGGA.................................... 21 3 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................TTTACAGTAGACCATGCTGG..................................... 20 3 2 0.50 1 0 1 0 0 0 0
................................................................................................................................................................................................................TAAGGTACTTCGCCATCCC........................ 19 3 6 0.17 1 0 0 1 0 0 0
CTGGGTAGCTCTGTATGGATG...................................................................................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 1 0 0
...................................................................................................................................................................................................TTACAGTAGACCATGCTGG..................................... 19 3 20 0.10 2 0 0 0 0 1 1

Anti-sense strand reads

GACACATCGAGACATACACACACCAATTACATAGAATTTACTCTTTTGCACAGGCACTGACACGAATGGAAAATTACGTAAATTTAGTCGGTGACGCAGTAATCCAAGTCGACAAGAACTCCCGCTCGAATTACGTTTATTAAATCATCTGTTACACTTTTATCGGCCTTATAGATTTTTACAGTAATTTATGGAAATGTCCTCTGGTATTACCTGAAGTGGTAGGGTACTATTGCCCTACACAACGGAAT
**************************************************........(((((.......((((((((((((....(((...)))...((((((((((.(((.((...)).)))))))))))))............((((.....((........)).....)))).))))).)))))))......)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M028
head
 M047
female body
 GSM1528803
follicle cells		 SRR060682
9x140_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060662
9x160_0-2h_embryos_total
 V047
embryo
 V116
male body		 M027
male body		 SRR060658
140_ovaries_total
 SRR060687
9_0-2h_embryos_total
............................................................CACGAATGGTCGATTACGTAAAT........................................................................................................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ACTGGGGTGGTAGGGTAC..................... 18 3 20 0.40 8 0 0 5 0 0 0 0 0 2 0 0 0 0 1
..................................................................................................................................................................................................................................GTCCTATTGCCCTACACC....... 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ACTGGGGTGGTAGGGTACT.................... 19 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TTTATCCTCCTTATAGATTTTTA...................................................................... 23 2 10 0.20 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTACCTGAAGTGGCACGCTA...................... 20 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GTAGGGTTCTGTAGCCCTA........... 19 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................GTCCTATTGACCTACACCA...... 19 3 19 0.11 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................AAAATTTGGTAAATTTAG.................................................................................................................................................................... 18 2 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0
.............................................................................................................................TCAAATTACGATTATTAACTC......................................................................................................... 21 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................GCATGGCAAATCACGTAAAT........................................................................................................................................................................ 20 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................TCTGGAATTAGCTGAAGCG.............................. 19 3 16 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AGGGTACTTCTGCCATAC.......... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:16910103-16910353 - dvi_20254 CTGTGTAGCTC----------------------TGTATGTGTGTGGTTAATGTATCTTA-----------------------------------------------------------------------------------AATGAGAAAA--CGTGTCCGT---GACTGTGCTTACCTTTTAATGCATTTAAATCAGCCACTGC----GTCATTAGGTTCAGCTGTTCTTGAGGGCGAG--CTTAATGCAAATAATTTAGTAGACAATGTG--AAAATAGCCGGAATATCTAA-----------------AAATGTCATTAAATACCTTTACAGGAGACCAT----------AATGGACTTC---------------------------------------------ACCATCCCATGATA----ACGGGATGTGTTG------CCTTA
droMoj3 scaffold_6680:19777045-19777237 + TTGTGTGAGTG----------------------TGGGTG--TGTGGCTAATGTGTCTTA-----------------------------------------------------------------------------------AATGAGAAAA--CGTGTTCGT---GGTTCTCCTCACCTTTTAATGCATTTAAATCAGCCACAGC----GTCATTAGGTTCAGCTGCTGCCAAAAGACAA--TGTCATATAGATAATTTAAGAGCCAATGAGCTGAACTAACCGCAAAATCTAA-----------------AG-GGTCATCAAA--------------------------------------------------------------------------------------------------------------------------TACC
droGri2 scaffold_15110:15245674-15245860 + GTGTGTGTTTG----------------------AG------TGTGGTTAATGTGTCTTA-----------------------------------------------------------------------------------AATGAGAAAA--CGTGTCAGCAGTGGTTGTGTTTACGCATTTATGCATTAGAATCAGTGAAAGCCAAAGTCATTAGGTTCAGCTGATGTTAAGGTTCAACATCTCTTGCAAGTAATTTAA-AGCCAATGAG----------------------AATAAAATTACT--------------------------------------------------------------------------------------------------------------------------------TAATCAGAATGCCTAA
droWil2 scf2_1100000004909:6830256-6830393 + GTGTGTGTGTG----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTGTGTGTGTGA------------GTAGG--TGTGTACGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--CATATAATGTATGTGCTTTTGTGTG----TGGGCTCAACTTCATTTCTCGGGTGGGTAGATGCGAACAATTCAATGAC----TCATATTAGC----------ATAGC
dp5 XR_group6:12076011-12076079 - CTGTGTGTGTC----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTGTG----------GCG-TGTGCGAAAA--CGTGTGCGC---AATTTTCGCAATTTTCTAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_33:98674-98752 - GTGTGTGTCTG----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTCTGTGTCTGTGTGGCG-TGTGCGAAAA--CGTGTGCGC---AATTTTCGCAATTTTCTAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_10413:575-695 - CGAATATGCTGAAT-------------GTAAT-ATGGTCAATACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTCTTTAGATATACCCAA-------AGT----------CATGGAAATC---------------------------------------------GCCATAATTTCAAA----ACAGAAGATGTGG------TTTTA
droBip1 scf7180000395185:56505-56572 - TTAATATAAAT----------------------CAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGTTGGAATTGTA--CGATTGCTAGAAGTATTTGA-----------------GAATGT----------------------------------------------GTCCAAAAAAC--------------------------------------------------------------------------TT
droKik1 scf7180000302471:835546-835661 - TTGTGTGTGTG----------------------TGGGTGAGTGTAGAAAAAGCATGTAAAATAAATAAACAAACCGCTGCCTGCATTTTAA-------------------------------------------------------------------------------------AGGCTCGAAAGTGATTTTGCCAGGCTCTGG----GCCTTTAGCTGCAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG
droFic1 scf7180000454113:2804360-2804431 + CTGGGGTCCTT-------------GATGAGTTG----TG--TGTGGTTAAAGTATTCCG-----------------------------------------------------------------------------------AATGGGACTA--CGTGTTGAT---GAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGTTTG--------------------------------------------------------------------------CC
droEle1 scf7180000491080:3469093-3469196 - AAAAAATTTAT----------------------T----------------------TCA-----------------------------------------------------------------------------------AAACATTAAA--TAAAATCAT---AGTAACTAAAAATCTTTAAA--------------------------------------------------------------------------------------------------------------------------------------------ACATTTAAAGAAGCCAAAAA-----------------------------------------------------------------CATTTAAAGAC----TAAGAAAATTGTTG------TAATA
droRho1 scf7180000770533:33023-33087 + GGACTTATTGG-----------------------GAATA--TT-------------------------------------------------------------------------------TAACCA----------AGC-GG-------------------------------------------------------------------------------------------------------------------------------------------------------TATGAAAATAGAAGGAA-------------------------------------------TAT-----------------------------------------------------------------------------TTTTCTGAAAATGTTA
droBia1 scf7180000299946:36998-37106 - AGAGGGTATTA----------------------TGACA-----------------------------------TTAGTCATAATATTTTAAAGTTTTTTTATTAATTTTGTTAAGAATTATATAGGTA----------ACA-AC-------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAAGTATGATAAA-------------------------------------------GGT------TTTTGGTA--------------------------------------------------------------------------TTTTT
droTak1 scf7180000415764:483962-484063 - CAATTTTAAAA----------------------TAGTAAAAT--AGCTAAGTTGACCTT-----------------------------------------------------------------------------------ATT--ACAACCATTTACTCTA---GGTTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGATTTT---------------------------------------------ATT--CATATTAAATCCGGTGG-AAATG-TG------CATTG
droEug1 scf7180000409711:3743128-3743214 - CCAGCCAACTCTGCTGGGGCTCTTGATGAGTTG----TGTGTGTGGTTAAAGCATCCCA-----------------------------------------------------------------------------------AATGAGACTA--CGTGTTGAT---GAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGTTTG--------------------------------------------------------------------------CC
dm3 chrX:12054905-12054981 + GTGTGTGTTTC----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTGTGTTTAGGA------------GGAGG--AGCGGATGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGGC---ATGTGATGG----CACTTGCCCTTT--------------------------------------------------------------------------GA
droSim2 3l:11565925-11566012 - CCAGCCAACTCAGTTGGGGTCCCTGATGAGTTG----TGTGCGTGGTTAAAGTATCCCA----------------------------------------------------------------------------------AAATGAGACTA--CGTGTTGAT---GAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGTTTG--------------------------------------------------------------------------TC
droSec2 scaffold_0:4051030-4051117 - CCAGCCATCTCAGTTGGGGTCCCTGATGAGTTG----TGTGCGTGGTTAAAGTATCCCA----------------------------------------------------------------------------------AAATGAGACTA--CGTGTTGAT---GAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGTTTG--------------------------------------------------------------------------TC
droYak3 v2_chr2h_random_005:310061-310139 - ATATGTATATT----------------------TATATGTGTA-------------------------------------------------------------------------------TGGATATATATGT------------ATGGA--TATGTATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--TGG---GTATGTATAATTTTATGTGTATGTA--------------------------------------------------------------------------AA
droEre2 scaffold_4929:14160325-14160399 - GTATGTATGTA----------------------TGTATGTATG-------------------------------------------------------------------------------TATGTATATATGT------------ATATA--TGTATGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TAC---GTGCGTATG----TATGTATGTATG--------------------------------------------------------------------------TA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CTGTGTAGCTC----------------------TGTATGTGTGTGGTTAATGTATCTTA-----------------------------------------------------------------------------------AATGAGAAAA--CGTGTCCGT---GACTGTGCTTACCTTTTAATGCATTTAAATCAGCCACTGC----GTCATTAGGTTCAGCTGTTCTTGAGGGCGAG--CTTAATGCAAATAATTTAGTAGACAATGTG--AAAATAGCCGGAATATCTAA-----------------AAATGTCATTAAATACCTTTACAGGAGACCAT----------AATGGACTTC---------------------------------------------ACCATCCCATGATA----ACGGGATGTGTTG------CCTTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TTGTGTGAGTG----------------------TGGGTG--TGTGGCTAATGTGTCTTA-----------------------------------------------------------------------------------AATGAGAAAA--CGTGTTCGT---GGTTCTCCTCACCTTTTAATGCATTTAAATCAGCCACAGC----GTCATTAGGTTCAGCTGCTGCCAAAAGACAA--TGTCATATAGATAATTTAAGAGCCAATGAGCTGAACTAACCGCAAAATCTAA-----------------AG-GGTCATCAAA--------------------------------------------------------------------------------------------------------------------------TACCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GTGTGTGTTTG----------------------AG------TGTGGTTAATGTGTCTTA-----------------------------------------------------------------------------------AATGAGAAAA--CGTGTCAGCAGTGGTTGTGTTTACGCATTTATGCATTAGAATCAGTGAAAGCCAAAGTCATTAGGTTCAGCTGATGTTAAGGTTCAACATCTCTTGCAAGTAATTTAA-AGCCAATGAG----------------------AATAAAATTACT--------------------------------------------------------------------------------------------------------------------------------TAATCAGAATGCCTAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GTGTGTGTGTG----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTGTGTGTGTGA------------GTAGG--TGTGTACGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--CATATAATGTATGTGCTTTTGTGTG----TGGGCTCAACTTCATTTCTCGGGTGGGTAGATGCGAACAATTCAATGAC----TCATATTAGC----------ATAGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
CTGTGTGTGTC----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTGTG----------GCG-TGTGCGAAAA--CGTGTGCGC---AATTTTCGCAATTTTCTAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GTGTGTGTCTG----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTCTGTGTCTGTGTGGCG-TGTGCGAAAA--CGTGTGCGC---AATTTTCGCAATTTTCTAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................GTGTGTGTG-------------------------------------------------------------------------------TGTCTGTGTC...............................................................................................................................................................................................................................................................................................................................19200.051000001
droAna3
CGAATATGCTGAAT-------------GTAAT-ATGGTCAATACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTCTTTAGATATACCCAA-------AGT----------CATGGAAATC---------------------------------------------GCCATAATTTCAAA----ACAGAAGATGTGG------TTTTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTCT...................................................................................................................................21204.05810810000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTCAAA----ACAGAAGATGTGG------TTT..26201.80361350000
..............................................AAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATG.................................................................................................................................................................................................................................................................................................21201.30260026000
.....................................................................................................................................................................................................................................................................................................................................TATACCCAA-------AGT----------CATGGAAATC---------------------------------------------GCC.......................................2511.001010000
..........................................................................................................................................................................................................................................................................................................................................CCAA-------AGT----------CATGGAAATC---------------------------------------------GCCATA....................................2311.001010000
.......................................AATACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTA...................................................................................................................................................................................................................................................................................................26200.459090000
...ATATGCTGAAT-------------GTAAT-ATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................20200.459090000
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAA----ACAGAAGATGTGG------T....21200.357060010
.........................................TACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTA...................................................................................................................................................................................................................................................................................................24200.306600000
..........................................ACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTG.....................................................................................................................................................................................................................................................................................................21200.306006000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTCAAA----ACAGAAGATGTGG------TT...25200.306000051
..............................AT-ATGGTCAATACTGAAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................21200.306303000
...............................................AAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------A..........................................................................................................................................22200.306402000
.............................................................................................................................................................GTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTCTTTAGATA............................................................................................................................21200.306150000
.......................................AATACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--A........................................................................................................................................................................................................................................................................................................21200.306204000
.....................................................TG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAG......................................................................................................................................20200.255050000
..................................................GATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTCT...................................................................................................................................26200.255140000
............................................TGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATG.................................................................................................................................................................................................................................................................................................23200.255005000
........................................ATACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--A........................................................................................................................................................................................................................................................................................................20200.255050000
.....................................................................................................................................................AGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTCT...................................................................................................................................20200.255140000
.........................................TACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------...........................................................................................................................................27200.255050000
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAA----ACAGAAGATGTGG------TTTT.24200.255022010
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAA----ACAGAAGATGTGG------TT...22200.255050000
.........................................TACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGC......................................................................................................................................................................................................................................................................................................21200.255050000
................................................AAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------...........................................................................................................................................20200.255050000
......TGCTGAAT-------------GTAAT-ATGGTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................20200.204004000
...............................................AAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATG.................................................................................................................................................................................................................................................................................................20200.204400000
.........................................TACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGT....................................................................................................................................................................................................................................................................................................23200.204040000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAAA----ACAGAAGATGTGG------.....21200.204004000
.........................................TACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGT......................................................................................................................................................................................................................................................................................................21200.204400000
.....................................................................................................................................................AGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTCTT..................................................................................................................................21200.204400000
..........GAAT-------------GTAAT-ATGGTCAATACT......................................................................................................................................................................................................................................................................................................................................................................................................................21200.153030000
............................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTCAAA----ACAGAAGATGT.............22200.153030000
............................................TGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AG.........................................................................................................................................26200.153300000
.........................................TACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTG.....................................................................................................................................................................................................................................................................................................22200.153030000
...........................................CTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------...........................................................................................................................................25200.153300000
........................................ATACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--.........................................................................................................................................................................................................................................................................................................19200.153003000
........................................ATACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGT....................................................................................................................................................................................................................................................................................................24200.153030000
...........AAT-------------GTAAT-ATGGTCAATACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................21200.153300000
...................................................................................................................................................................................................................................................................................................................................................................................................................................CAAA----ACAGAAGATGTGG------TTTT.21200.153003000
....TATGCTGAAT-------------GTAAT-ATGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................21200.153003000
................................................AAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGT.....................................................................................................................................26200.153120000
............................TAAT-ATGGTCAATACTGAAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................23200.102020000
............................................TGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGT....................................................................................................................................................................................................................................................................................................20200.102020000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCAAA----ACAGAAGATGTGG------TTC..25200.102020000
.............................................................................................................................................................GTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTCTTTAGATATA..........................................................................................................................23200.102020000
..........................................................................................................................................................................................................................................................................................................................................................................TC---------------------------------------------GCCATAATTTCAAA----ACAGAAGA................24200.102020000
.......................................AATACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AG.......................................................................................................................................................................................................................................................................................................22200.102200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTCAAA----ACAGAAGATGTGG------.....23200.102020000
..................................................GATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAG......................................................................................................................................23200.102020000
...........................................CTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATG.................................................................................................................................................................................................................................................................................................24200.102002000
...ATATGCTGAAT-------------GTAAT-ATGGTCAATAC.......................................................................................................................................................................................................................................................................................................................................................................................................................27200.102020000
.....ATGCTGAAT-------------GTAAT-ATGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................19200.102002000
............................................TGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTAT..................................................................................................................................................................................................................................................................................................22200.102020000
.............................................GAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------A..........................................................................................................................................24200.102001010
.....................................TCAATACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--.........................................................................................................................................................................................................................................................................................................22200.102200000
....................................................................................................................................................GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTCTTT.................................................................................................................................23200.102200000
......TGCTGAAT-------------GTAAT-ATGGTCAATACTGA....................................................................................................................................................................................................................................................................................................................................................................................................................27200.102002000
............................................................................................................................................................TGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTCTTTAGATATACC........................................................................................................................26200.102000020
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTCAAA----ACAGAAGATGTGG------T....24200.102020000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAA----ACAGAAGATGTGG------TTT..22200.102020000
.....................................TCAATACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTA...................................................................................................................................................................................................................................................................................................28200.102020000
..........................................ACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATG.................................................................................................................................................................................................................................................................................................25200.051010000
....................................GTCAATACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTT.....................................................................................................................................................................................................................................................................................................27200.051010000
....................................................TTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGT.....................................................................................................................................22200.051001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCAAA----ACAGAAGATGTGG------T....23200.051100000
......................................................G---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTCTTT.................................................................................................................................24200.051010000
.........................................TACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTT.....................................................................................................................................................................................................................................................................................................22200.051001000
............................TAAT-ATGGTCAATACTGAA...................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
.......................................AATACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTTAT...................................................................................................................................................................................................................................................................................................26200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CATAATTTCAAA----ACAGAAGATGTT............24200.051010000
.......GCTGAAT-------------GTAAT-ATGGTCAATACTGAA...................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
...........AAT-------------GTAAT-ATGGTCAATACTGAAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
.........TGAAT-------------GTAAT-ATGGTCAATACTGAAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................29200.051010000
....TATGCTGAAT-------------GTAAT-ATGGTCAATAC.......................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
....TATGCTGAAT-------------GTAAT-ATGGTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
.......................................AATACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATG.................................................................................................................................................................................................................................................................................................28200.051010000
.......GCTGAAT-------------GTAAT-ATGGTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
...............................................AAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGT-----------------------------------------------------------------------------------------------------------------------------------------------------...........................................................................................................................................21200.051010000
.........................................TACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTA.....................................................................................................................................................................................................................................................................................................22200.051010000
..............................AT-ATGGTCAATACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGT--.........................................................................................................................................................................................................................................................................................................28200.051010000
.............T-------------GTAAT-ATGGTCAATACTGAA...................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
......TGCTGAAT-------------GTAAT-ATGGTCAATACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
.................................ATGGTCAATACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--.........................................................................................................................................................................................................................................................................................................26200.051100000
...........................................CTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGT....................................................................................................................................................................................................................................................................................................21200.051000010
..............................................AAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTAC..................................................................................................................................................................................................................................................................................................20200.051010000
.....ATGCTGAAT-------------GTAAT-ATGGTCAATAC.......................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
......................................................................................................................................................GG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTCTTTAGATA............................................................................................................................26200.051100000
................................................................................................................................................................TGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTCTTTAGATAT...........................................................................................................................19200.051010000
....................................................................................................................................................GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTCTTC.................................................................................................................................23200.051010000
..............................................AAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGA........................................................................................................................................25200.051100000
.......................................AATACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--T........................................................................................................................................................................................................................................................................................................21200.051100000
............................................TGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGA........................................................................................................................................27200.051010000
..........................................ACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGT....................................................................................................................................................................................................................................................................................................22200.051100000
....TATGCTGAAT-------------GTAAT-ATGGTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
......................................CAATACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGT....................................................................................................................................................................................................................................................................................................26200.051010000
.............................AAT-ATGGTCAATACTGAAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
......................................CAATACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGT......................................................................................................................................................................................................................................................................................................24200.051001000
.......................................AATACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AC.......................................................................................................................................................................................................................................................................................................22200.051010000
....................................................................................................................................................GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTCTTTT................................................................................................................................24200.051100000
...............................T-ATGGTCAATACTGAAAAGAC..............................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCAAA----ACAGAAGATGT.............20200.051001000
.........................................................................................................................................................................................................................................................................................................................................................................ATC---------------------------------------------GCCATAATTTCAAA----ACAGAAG.................24200.051010000
..........................................ACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTA...................................................................................................................................................................................................................................................................................................23200.051001000
..AATATGCTGAAT-------------GTAAT-ATGGTCAATAC.......................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
.........TGAAT-------------GTAAT-ATGGTCAATACC......................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
...............................T-ATGGTCAATACTGAAAAGATTG---------------------------------------------------------------------------------------------GATT--.........................................................................................................................................................................................................................................................................................................27200.051001000
............................TAAT-ATGGTCAATACTGAAAAGATTG---------------------------------------------------------------------------------------------...............................................................................................................................................................................................................................................................................................................26200.051100000
.............................AAT-ATGGTCAATACTGAAAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000
..............................................AAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------A..........................................................................................................................................23200.051010000
...............................................AAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTA...................................................................................................................................................................................................................................................................................................18200.051010000
...........................................................................................................................................................GTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTCTTTAGATATACCC.......................................................................................................................28200.051010000
.....ATGCTGAAT-------------GTAAT-ATGGTCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
.....ATGCTGAAT-------------GTAAT-ATGGTCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
.............................AAT-ATGGTCAATACTGAAAAGAC..............................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
...............................................AAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AG.........................................................................................................................................23200.051100000
.....................................................................................................................................................AGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTCTTTAGA..............................................................................................................................25200.051100000
......................................CAATACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGC....................................................................................................................................................................................................................................................................................................26200.051010000
............................................TGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTA...................................................................................................................................................................................................................................................................................................21200.051001000
.............................................GAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGA........................................................................................................................................26200.051100000
....................................................TTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTCT...................................................................................................................................24200.051100000
.........................................TACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--A........................................................................................................................................................................................................................................................................................................19200.051001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CATAATTTCAAA----ACAGAAGATGTTT------.....25200.051010000
............................................................................................................................................................TGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTCTTTAGATATA..........................................................................................................................24200.051010000
..............................................AAAAGATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAA.......................................................................................................................................26200.051100000
.............T-------------GTAAT-ATGGTCAATACTGTTT..................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAAA----ACAGAAGATGTGG------TTT..24200.051010000
.......................................................................................................................................................G--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTCTTTA................................................................................................................................21200.051010000
..AATATGCTGAAT-------------GTAAT-ATGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................ATC---------------------------------------------GCCATAATTTCAAA----ACAC....................21200.051010000
............................TAAT-ATGGTCAATACTGAAAAGATT.............................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
..................................TGGTCAATACTGAAAAGATTG---------------------------------------------------------------------------------------------GAGG--AC.......................................................................................................................................................................................................................................................................................................27200.051010000
....................................................TTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGA........................................................................................................................................19200.051000010
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAA----ACAGAAGATGTGG------TC...22200.051010000
..................................................GATTG---------------------------------------------------------------------------------------------GAGG--AGTGTATGG-----------------------------------------------------------------------------------------------------------------------------------------------------AGAAGC.....................................................................................................................................24200.051010000
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAA----ACAGAAGATGTGG------TA...22200.051001000
.............................................................................................................................................................................................................................................................................................................................................A-------AGT----------CATGGAAATC---------------------------------------------GCCATAAC..................................22200.051001000
droBip1
TTAATATAAAT----------------------CAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGTTGGAATTGTA--CGATTGCTAGAAGTATTTGA-----------------GAATGT----------------------------------------------GTCCAAAAAAC--------------------------------------------------------------------------TTSizeHit CountTotal NormTotal
No Reads
droKik1
TTGTGTGTGTG----------------------TGGGTGAGTGTAGAAAAAGCATGTAAAATAAATAAACAAACCGCTGCCTGCATTTTAA-------------------------------------------------------------------------------------AGGCTCGAAAGTGATTTTGCCAGGCTCTGG----GCCTTTAGCTGCAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGSizeHit CountTotal NormTotal
No Reads
droFic1
CTGGGGTCCTT-------------GATGAGTTG----TG--TGTGGTTAAAGTATTCCG-----------------------------------------------------------------------------------AATGGGACTA--CGTGTTGAT---GAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGTTTG--------------------------------------------------------------------------CCSizeHit CountTotal NormTotal
No Reads
droEle1
AAAAAATTTAT----------------------T----------------------TCA-----------------------------------------------------------------------------------AAACATTAAA--TAAAATCAT---AGTAACTAAAAATCTTTAAA--------------------------------------------------------------------------------------------------------------------------------------------ACATTTAAAGAAGCCAAAAA-----------------------------------------------------------------CATTTAAAGAC----TAAGAAAATTGTTG------TAATASizeHit CountTotal NormTotal
No Reads
droRho1
GGACTTATTGG-----------------------GAATA--TT-------------------------------------------------------------------------------TAACCA----------AGC-GG-------------------------------------------------------------------------------------------------------------------------------------------------------TATGAAAATAGAAGGAA-------------------------------------------TAT-----------------------------------------------------------------------------TTTTCTGAAAATGTTASizeHit CountTotal NormTotal
No Reads
droBia1
AGAGGGTATTA----------------------TGACA-----------------------------------TTAGTCATAATATTTTAAAGTTTTTTTATTAATTTTGTTAAGAATTATATAGGTA----------ACA-AC-------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAAGTATGATAAA-------------------------------------------GGT------TTTTGGTA--------------------------------------------------------------------------TTTTTSizeHit CountTotal NormTotal
No Reads
droTak1
CAATTTTAAAA----------------------TAGTAAAAT--AGCTAAGTTGACCTT-----------------------------------------------------------------------------------ATT--ACAACCATTTACTCTA---GGTTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGATTTT---------------------------------------------ATT--CATATTAAATCCGGTGG-AAATG-TG------CATTGSizeHit CountTotal NormTotal
No Reads
droEug1
CCAGCCAACTCTGCTGGGGCTCTTGATGAGTTG----TGTGTGTGGTTAAAGCATCCCA-----------------------------------------------------------------------------------AATGAGACTA--CGTGTTGAT---GAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGTTTG--------------------------------------------------------------------------CCSizeHit CountTotal NormTotal
No Reads
dm3
GTGTGTGTTTC----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTGTGTTTAGGA------------GGAGG--AGCGGATGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGGC---ATGTGATGG----CACTTGCCCTTT--------------------------------------------------------------------------GASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................GTGTGTTTAGGA------------GGAGG--AGC......................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................................................................................................................................GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGGC---ATGTGATC.............................................................................................1630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGTTTC----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTGT....................................................................................................................................................................................................................................................................................................................................21140.2130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000
...TGTGTTTC----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTG.....................................................................................................................................................................................................................................................................................................................................2270.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
....GTGTTTC----------------------TGTGTGTGTG-------------------------------------------------------------------------------T........................................................................................................................................................................................................................................................................................................................................18140.1420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000
.........TC----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTGTGTTT................................................................................................................................................................................................................................................................................................................................21190.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.......TTTC----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTGTGT..................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000
..........C----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTGTGTT.................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020
........TTC----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTGTG...................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000
........TTC----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTGT....................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000
......GTTTC----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTGTG...................................................................................................................................................................................................................................................................................................................................21150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......GTTTC----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTGT....................................................................................................................................................................................................................................................................................................................................20170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GTTTC----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTG.....................................................................................................................................................................................................................................................................................................................................19190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................................TGTGTGTGTG-------------------------------------------------------------------------------TGTGTGTTT................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..................................GTGTGTGTG-------------------------------------------------------------------------------TGTGTGTTTA...............................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.......TTTC----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTG.....................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................................TGTGTGTGTG-------------------------------------------------------------------------------TGTGTGTTTA...............................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........TTC----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTGTGT..................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..........C----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTGTGT..................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TTTC----------------------TGTGTGTGTG-------------------------------------------------------------------------------TGTGTG...................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CCAGCCAACTCAGTTGGGGTCCCTGATGAGTTG----TGTGCGTGGTTAAAGTATCCCA----------------------------------------------------------------------------------AAATGAGACTA--CGTGTTGAT---GAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGTTTG--------------------------------------------------------------------------TCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
CCAGCCATCTCAGTTGGGGTCCCTGATGAGTTG----TGTGCGTGGTTAAAGTATCCCA----------------------------------------------------------------------------------AAATGAGACTA--CGTGTTGAT---GAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGTTTG--------------------------------------------------------------------------TCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ATATGTATATT----------------------TATATGTGTA-------------------------------------------------------------------------------TGGATATATATGT------------ATGGA--TATGTATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--TGG---GTATGTATAATTTTATGTGTATGTA--------------------------------------------------------------------------AASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................TATATGT------------ATGGA--TATGTATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--TGG---G....................................................................................................26200.05101000000000
..................................................................................................................................................................T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--TGG---GTATGTATAATTTTATGTGTA................................................................................26200.05101000000000
...............................................................................................................................................................................................................................................................................................................................................................TATGTATAATTTTATGTGTATGTA--------------------------------------------------------------------------..24200.05101000000000
......ATATT----------------------TATATGTGTA-------------------------------------------------------------------------------TGGATATATA...............................................................................................................................................................................................................................................................................................................................25200.05101000000000
droEre2
GTATGTATGTA----------------------TGTATGTATG-------------------------------------------------------------------------------TATGTATATATGT------------ATATA--TGTATGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TAC---GTGCGTATG----TATGTATGTATG--------------------------------------------------------------------------TASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................TGTATGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TAC---GTGCGTAT.............................................................................................2120.5010000100
...........................................................................................................................................................GTATGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TAC---GTGCGTATT----........................................................................................2120.5011000000
...........................................................................................................................................................GTATGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TAC---GTGCGTATG----........................................................................................2120.5010000010
................................................................................................................................................................TAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TAC---GTGCGTATG----TATGT...................................................................................2120.5010000100
..........................................................................................................................................................TGTATGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TAC---GTGCGTATG----........................................................................................2220.5011000000

Generated: 05/16/2015 at 09:42 PM