ID:

dvi_20130

 Coordinate:

scaffold_13049:15861575-15861755 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-40.9 -40.9 -40.7

Flybase annnotation

CDS [Dvir\GJ11716-cds]; CDS [Dvir\GJ11716-cds]; exon [dvir_GLEANR_11734:2]; exon [dvir_GLEANR_11734:1]; intron [Dvir\GJ11716-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTATAACCGAAACCAAAAGAACAAACCACAATCAAATGCAGCGGGCGCGGGTATGTTCAACCACTGAGAATTAGTCAGCTAGCCGTAAAAAGACCTGCTGTCGATAAGATAGTCCCTGTCAATCAGCTTTGTAGTTCGCTGACGTGCAGGTTTTGCCCGCGCTTGTCAGTGATCAACTGATTGCTCAAAAATGTTCCTGCATTAATTTAATTTATAATTCTATTAAATTAGCTGCACTCATCTTTCTATCGGGCGGCATGAATATAGCGTGGAGCGTTGGT
**************************************************..............(((((((((((..((((...((.....(((..((((((.....))))))....))).....))....))))((((((((((((.(((...))).))))..))))))))...))))))).))))...((((....))))(((((((((..........))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M061
embryo
 M027
male body		 SRR060664
9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060672
9x160_females_carcasses_total
 GSM1528803
follicle cells		 V116
male body		 SRR060689
160x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060678
9x140_testes_total
 V053
head
 SRR060658
140_ovaries_total
 SRR060666
160_males_carcasses_total
 V047
embryo
..............................................................................................................................................................................................................................................................GGCATGAATATAGCGTGGA........ 19 0 1 14.00 14 11 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................GCACTCATCTTTCTATCGGGC........................... 21 0 1 6.00 6 5 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TGCACTCATCTTTCTATCGGGC........................... 22 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................CACTCATCTTTCTATCGGGC........................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................ACCACAATTAAACGCAGCGGGCGC......................................................................................................................................................................................................................................... 24 2 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................ACAATCAAATGCAGCGGGCGCGGCT..................................................................................................................................................................................................................................... 25 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................GCGGCATGAATATAGCGTGGA........ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................GCACTCATCTTTCTATCGGGCGGCATGA.................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................ATGAATATAGCGTGGAGC...... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..ATAACCGAAACCAAAAGAACAAACCA............................................................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................AAACCACAATCAAATGCAGC............................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..ATAACCGAAACCAAAAGAAC................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................TTCAAATGCAGCGGGCGCGGC...................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................GCCCGGGTATGTTCACCCA.......................................................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................GTGATCAACTGATTGCTCC.............................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TAGCTGCACTCATCTTTCTATCGGGC........................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................GGCATGAATATAGCGTGGAGC...... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GAACAAACCACAATCAAATG................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AGCTGCACTCATCTTTCTATCGGGC........................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................TTCTATCGGGCGGCATGAATATA............... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................AGGCATGAATATAGCGTGG......... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................AATCAAATGCAGCGGGCGCGGGC..................................................................................................................................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TGATCAACTGATTGCTCAAAAATGTT...................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................GTCAGATGCAGCGGGCGTG........................................................................................................................................................................................................................................ 19 3 20 0.55 11 0 0 1 0 0 0 1 0 0 6 0 0 2 0 0 0 0 1 0
...........................ACAATCAGACGCAGCGGGC........................................................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................TCAAATGCAGCGGGCACTGGA..................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................ATCAGACGCAGCGGGCGTGG....................................................................................................................................................................................................................................... 20 3 13 0.23 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TAATGCAGCTGGCGGGGGTA.................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................GCCCGGCTATGTTCACCCA.......................................................................................................................................................................................................................... 19 3 12 0.17 2 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................GTTCCTGCGTAAATTTAA....................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................CTTCATTAATTTAATATATAA................................................................ 21 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................TCAGACGCAGCGGGCGTGGG...................................................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TAAAATGTTCCTGGTTTAATTT......................................................................... 22 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................CGGGCGCGGGTGTGATCAG............................................................................................................................................................................................................................. 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................GTCAGATGCAGCGGGCGTGG....................................................................................................................................................................................................................................... 20 3 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................CGGGCGCGGTTATGCCCAA............................................................................................................................................................................................................................. 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
........AAAATCAAAAGATCAAACCAC............................................................................................................................................................................................................................................................ 21 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CGACGGGGAGGTTTTGCC............................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CATATTGGCTTTGGTTTTCTTGTTTGGTGTTAGTTTACGTCGCCCGCGCCCATACAAGTTGGTGACTCTTAATCAGTCGATCGGCATTTTTCTGGACGACAGCTATTCTATCAGGGACAGTTAGTCGAAACATCAAGCGACTGCACGTCCAAAACGGGCGCGAACAGTCACTAGTTGACTAACGAGTTTTTACAAGGACGTAATTAAATTAAATATTAAGATAATTTAATCGACGTGAGTAGAAAGATAGCCCGCCGTACTTATATCGCACCTCGCAACCA
**************************************************..............(((((((((((..((((...((.....(((..((((((.....))))))....))).....))....))))((((((((((((.(((...))).))))..))))))))...))))))).))))...((((....))))(((((((((..........))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060679
140x9_testes_total
 SRR060674
9x140_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060666
160_males_carcasses_total
 SRR060689
160x9_testes_total
 SRR060655
9x160_testes_total
 GSM1528803
follicle cells		 SRR060669
160x9_females_carcasses_total
 M047
female body
 V047
embryo
 SRR060670
9_testes_total
 SRR060683
160_testes_total
 SRR060681
Argx9_testes_total
 SRR060664
9_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
................................................................................................CGACAGCTATTCTATCAGGGACAGTT............................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...ATTGCCTTCGGTTTTCTTGTTT................................................................................................................................................................................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................ATACAAGTTGTTGAGTCTTAATT............................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................CGCGCGCATACCAGTGGGTGA........................................................................................................................................................................................................................ 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................CGCGCATACCAGTGGGTGA........................................................................................................................................................................................................................ 19 3 20 0.35 7 0 0 0 2 0 0 0 4 0 0 0 0 0 1 0 0
...........................................................TGGTGAGTCTTAATCAAT............................................................................................................................................................................................................ 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...ATTGGATTCGGTTTTCTTGTTT................................................................................................................................................................................................................................................................ 22 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...ATTGACTTCGGTTTTCTTGTTT................................................................................................................................................................................................................................................................ 22 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................GCGCATACCAGTTGGTGA........................................................................................................................................................................................................................ 18 2 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....TGGCTTCGGTTTGCTTGTTT................................................................................................................................................................................................................................................................ 20 2 8 0.25 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
...AGTGACTTTGGTTTGCTTGTTT................................................................................................................................................................................................................................................................ 22 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................TGGTGAGTCTTAATCA.............................................................................................................................................................................................................. 16 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....TTGACTTCGGTTTTCTTGTTT................................................................................................................................................................................................................................................................ 21 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....TGACTTCGGTTTTCTTGTTT................................................................................................................................................................................................................................................................ 20 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TGGTGAGTCTTAATC............................................................................................................................................................................................................... 15 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....TTGACTTTGGTTTGCTTGTTT................................................................................................................................................................................................................................................................ 21 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....TTGGCTTCGGTTTGCTTGTTT................................................................................................................................................................................................................................................................ 21 2 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................AGCCCATACCAGTGGGTGA........................................................................................................................................................................................................................ 19 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................GCGCATACTAGTGGGTGA........................................................................................................................................................................................................................ 18 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1
...ATTCGATTTGGTTTGCTTGTTT................................................................................................................................................................................................................................................................ 22 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................CGAGTTTTCACAAGG.................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:15861525-15861805 - dvi_20130 G---------------------------------TATAACCGAAACCAAAAGAACAAACCACAATCAAATGCAGCGGGCGCGGGTATGTTCAA---CCACTGAGAA-----------------------------------------------------------------------TTAGTCAGCTAGCCGTAAAAAGACCTGCTGTCG---------ATAAGATAGTC----CCTGTCAATCA--------------------------GCTTTG--------------------TAGTTCGCTGACGTGCAGGTTTTGCCCGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTCAGTGATCA----------ACTGATTGCTCA-------------------------------AAAATGT--------------------------TCCTG----------CATTA--ATTT--AATTTATAA-------------------TTCTATTAAATTAGCTGCACTCATCTTTCTATCGGGCGGCATGAATATAGCGTGGAGCGTTGGT
droMoj3 scaffold_6680:20942761-20943031 + G---------------------------------TACAACCGAAACCAGCGGAACAAGCCACAGTCCAATGCTGTGGGAGCTGGTACGTACGG---C-TGAATC--------------------------------------------ATC---------------------TGAAATTAGTCAGGTGGCCATAAAAATAAGTGCTCTAG---------ATAAGATGTAC----AGTGCCAATCT--------------------------ACCTTG--------------------CGCTTGGCTAACCTGATTGT-------GGGCT-------------TTTCAGC-TAGCCATTAATGCCCG--------------------------------------------------CAAAT----------------CA-----------------------------------------------------------------------------------------------------------------ATTACTAAATATAA---TT-----------------------------------------------------------------------------------TTCTCTATCTTCAGCTGCGCTCATCTTCGTTTCGGGTGGTATGAACATTGCCTGGAGCATTGGC
droGri2 scaffold_15110:12783282-12783560 + G---------------------------------TATAGCCGCAACCAGAGGAACAAACCGCAATCAAACGCTGCGGGTGCGGGTAAGTTCAA---CTG-GACG--------------------------------------------TTT---------------------CGAAATAAGTCTGCTGGCCATAAAAAGAACTGCAGCCG---------ATAAGATAGCC----TGCGTGAATCA--------------------------GGC-AG--------------------------------------TACTTGGTTGGGCTTACAATAAATTGTTTTCGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TA----------ACCGATTACTCTGAAGTCTCCTCAAATTCAATTACCAATCGAAG----------------------------------------------------------------------------------------TTTTCTCATTTCAGCTGCACTCATTTTTCTCACGGGTGGCATGAACATTGCTTGGAGCATGGGA
droWil2 scf2_1100000004837:712984-713292 + G---------------------------------TATAGCCGTAATCAAAAAAATAAACCACAATCAAACTCCGCTAGCGTTGGTAAGTCCCA---CAACAGCATTTTAGTT--------------AGTCATCTGTTATAGATAGATAACTGTGTATACAT--------------------------------------------------------------------------------------------------------------ACCCCCTTGTTGCCACCCGTCACAATCGCTGGGATAT-TAG---AT-------AGGCT-------------TCTC-GC-TAATCA--------------------------TATCGCCCCTTATC-AATCGCGACGTGATCCTGGCAAAT----------------CAACAA-----------------------------------------------------------------------------------------------------------------------------TTAT--------------------------TA----------CGACCTTACTGTATACATATTTTAT-------------------CTCAATAAAATTAGCTGCTCTCATCTTCATCTCTGGCGGCATGAACATTGCCTGGAGCAGCGGT
dp5 XR_group6:7546219-7546545 + C---------------------------------TTCAGTCGCGGCCAAACGAACAAGCCCCAATCGAATGCTGTGGGAGCTGGTGAGTAGCT---C--------------------------------------------------------------------------TGGGAATTAGTCATCTGCTCTGCAAT-------------GGAAATCCGATAAGATAG-----------------------------------------------------------------------------------------------------------------------------CCTTGAATGGGGGGCGGGGCCTATATTCATGGAATTGATTAAGAACCAGTGACGTCATCAGGCCAGAC----------------AAATTATA--TCATTTTG--ATGGGTCTTAATAGATTCCCATCTCATAGTACCTTTTTGTACTAGATAGACATGA----------AATGTATGCAAA-------------------------------ATTCTGT----------------------------------------------------------------------------------TCTTCCACTTTCAGCGGGTCTGATCTTTGTCTCGGGTGGAATGAACATTGCGTGGTCCATCGGG
droPer2 scaffold_27:911892-912218 - C---------------------------------TTCAGTCGCGGCCAAACGAACAAGCCCCAATCGAATGCTGTGGGAGCTGGTGAGTAGCT---C--------------------------------------------------------------------------TGGGAATTAGTCATCTGCTCTGCAAT-------------GGAAATCCGATAAGATAG-----------------------------------------------------------------------------------------------------------------------------CCTTGAATGGGGGGCGGGGCCTATATTCATGGAATTGATTAAGAACCAGTGACGTCATCAGGCCAGAC----------------AAATTATA--TCATTTTG--ATGGGTCTTAATAGATTCCCATCTCATAGTACCTTTTTGTACTAGATAGACATGA----------AATGTATGCAAA-------------------------------ATTCTGT----------------------------------------------------------------------------------TCTTCCACTTTCAGCTGGTCTGATCTTTGTCTCGGGTGGAATGAACATTGCGTGGTCCATCGGG
droAna3 scaffold_13337:14999347-14999535 - G---------------------------------ATGAGTCGCAATCAGAAGAATAAGCCACAATCAAATGCTGTGGGTGGAGGTGAGTCATACCAGTTCAAAGTCCAAA-----------------------------------------------------------------------------GATCTCAAAT-------------GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTATTATCTCTTGGGACTAAAATAT-------------------AATAAATAC-GTATTTCTCATTCAGCTGGCTTAATATTTGTATCCGGAGGAATGAACATAGCGTGGAGCATTGGA
droBip1 scf7180000395155:928244-928424 - G---------------------------------TACAGTCGCAATCAGAGGAATAAGCCACAATCGAATGCTGTGGGAGGAGGTGAGTCATAGCAGTTCAAAGACCAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAAAAAAAG---TGT--------------------------TGTATAACCATTTGAGACTAATGT-------------------------------ATAACTAATTTTTAGCTGGCCTAATATTTGTATCTGGAGGAATGAACATAGCGTGGAGCATTGGA
droKik1 scf7180000302334:368464-368767 + G--------------------------------------------------------------------------------AGGTGAGTCAGA---GTCGATACTACAAAAATATATATAACAAAA--TC------------------ATTTACAGGGTAGATTGATGTTCTATCTTCTATCTATCTATTTTTCTAC-------------CTATCTGTCAATCGAT-------------------ATATCTATCGATCTATCTGTCTATCTATTTAT--------------------CTATCTACTGATCTACTGA-------------------------------------------------------------------------------------------------TCCATCTATATTTCTATCAA------------------TCT-------------------------------------------------------TCTACCTTCTGTAACAAATCTCTCTCACCCCTCCTAATAATCTTTTACAATTA----------------------------------------------------------------------------------------TT-AAACCCAATCCTTAGCGGCTCTCATTTTCGTGTCTGGAGGCATGAACATTGCGTGGAGCATTGGC
droFic1 scf7180000453841:984119-984334 + ACAAACCACCACAGTGGTGGTGAACAATGGCTGGTACAGTCGCAATCAGAAGAACAAGCCCCAATCAAATGCAGTTGGCGCAGGTGAGTCGCA---ATCCAAAGTTTATT-----------------------------------------------------------------------------GTTCATAGAA------------------------------------------------ATATTTGGAAATTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTA--ATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTAATTT-ATTTCCTTCTCCTAGCTGGTTTAATTTTTGTTTCCGGTGGCATGAATATTGCGTGGAGCATTGGC
droEle1 scf7180000490564:893103-893330 - G---------------------------------TACAGTCGCAACCAGAAGAACAAACCACAATCAAACGCAGTTGGCGCAGGTGAGTCACA---GATCAAAGTGCGGGGAA------------------------------------------------------------------------------------------------------------------------------------ATATGTTAAAGTCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTG--CAGTCA---------AAGCCAACTAATACTTACTTATA----------------------------------------------------------------------------T--------------------------TATTA----------TACTT--ATAT--TAGCTATAA---TGATCACTAAAATG-ACTTGCCTTTTGCAGCAAGTCTCATCTTTGTCTCTGGAGGAATGAACATTGCGTGGAGCATGGGC
droRho1 scf7180000776514:303212-303424 - G---------------------------------TACAGTCGTAATCAGAAGAACAAACCACAATCAAATGCCGTTGGCGCAGGTGAGTCACA---CATCAAAGTACAAAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTTCAGTGAAAAA----------------ATAATATA--TTTATTTA--ATATAACTAAA------------------------------------------------------------------------------------------------------------A-TTTACATTCA---------C-------------------------------------AACTGATCACTAAAGTT-ATATCCCATTTTCAGCGAGTCTCATCTTCATCTCTGGAGGAATGAACATTGCGTGGAGCATTGGA
droBia1 scf7180000302428:7682624-7682691 + A---------------------------------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTATTATACAGCTGCCCTGATCTTCCTGACCGGTGGCATTCACATTGCCTGGAGCATTGGC
droTak1 scf7180000415209:89571-89790 - G---------------------------------TACAGTCGCAATCAGAAGAACAAGCCACAATCGAATGCTGTTGGCGCAGGTGAGTCACG---GTTCAATGTACAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAG--ATTAATAT-AATTGGACCCTATCTGGTAGATAGTATCTACAATATATAGAATAAT----------AATTTAT--------------------------------------------------------------------C-------------------------------------AACTAAACACTTACC---TTTTTTCCTCTCCAGCGGGTCTTATTTTTGTCTCTGGTGGAATGAATATTGCGTGGTGCGTTGGT
droEug1 scf7180000409711:1939975-1940305 - T---------------------------------TTTAAGCGCAACCGAAAGAACAAACCACAGTCCAATGCCGTGAGCCCAGGTGAGTTTAG---GTTTTTGGAT-------------------------------------------------------------T--------TTAGGTTTATTAACTATCAAAATTCTTGTGGCTA---------ATATCTTATCTAGTCCAC--GAATAA--------------------------TAT-GT--------------------------------------CTTATTCCTGGAACCACAGTAGATTATCTACCATGACGCCATTAATGGGTAGCAAG-TTTATGTTTATGA----------------------------TTCTCTTATATATTTTTTGGTTTAATATATAA--AATGG--CAATTTTAA---------CTGAT------------------------------------------CTAATGAGT---------------------------------------ATTT-----------------------------------------------------------------------------------TTCAAAACTTTCAGCCGGTCTCATCTTCCTCTCAGGAGGCATGAACATTGCGTGGGCCATTGGC
dm3 chr3L:10087261-10087490 - G---------------------------------TACAGTCGTAATCAGAAGAACAAGCCACAATCGAATGCTGTTGGAGCAGGTGAGTCAAA---GAAAAAAGAT--------------------------------------------TTTTAAGTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACA----------------------------------TTT--------------------TAA----AGTA----------------ATATTATA--TATATATGCATTGTAA---------CTACC------------------------------------------AAATTAA---------------------------------------ATATAGTACAAT-TTTACACTTAGCGAACTAAC-------------------------------------C----------------ACTGTTTAATCTCCAGCGGGTCTCATTTTCGTCTCTGGCGGTATGAATATTGCGTGGAGCATTGGA
droSim2 3l:9830939-9831136 - dsi_24556 G---------------------------------TACAGTCGTAATCAGAAGAACAAGCCACAATCTAATGCTGTTGGAGCAGGTGAGTCAAA---GAAATATAAT--------------------------------------------TTTTAAAGTATA-----------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA----AAGA----------------ATATTATA--TATATGTG--TTGTAA---------ATACC------------------------------------------AAATTAA---------------------------------------ATACTGT---------------------------------------------------------------T----------------ACTGTTTTATCTCCAGCGGGTCTCATTTTTGTCTCTGGCGGTATGAACATTGCGTGGAGCATTGGA
droSec2 scaffold_0:2302694-2302893 - G---------------------------------TACAGTCGTAATCAGAAGAACAAGCCACAATCGAATGCTGTTGGAGCAGGTGAGTCAAA---GAAATATAAT--------------------------------------------TTTGAAAGTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACA---------------------------------------------------------TAA----AGTA----------------ATATTATA--TATATGTG--TTGTAA---------ATACC------------------------------------------AAATTAA---------------------------------------ATATTGT---------------------------------------------------------------T----------------ACCGTTTAATCTCCAGCGGGTCTCATTTTTGTCTCTGGCGGTATGAACATTGCGTGGAGCATTGGA
droYak3 3L:10066822-10067049 - G---------------------------------TACAGTCGTAATCAGAAGAACAAGCCACAATCTAATGCAGTTGGAGCAGGTGAGTCACA---GTTAAAGGTT--------------------------------------------TATGAAAGCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGA----------------------------------GTA--------------------ATA----AGGA----------------ATATACAA--AATAT--GCATTCCAA---------ATACA------------------------------------------GTATTGAGT---------------------------------------TTTTTAAAACATTTACAATTACTTATCTACC-------------------------------------C----------------ACTGTTT-AATTGCAGCGGGTCTCATTTTCGTCTCTGGCGGCATGAACATTGCGTGGAGCATTGGA
droEre2 scaffold_4784:10066670-10066885 - G---------------------------------TACAGTCGCAATCAGAAGAACAAGCCACAATCAAATGCTGTTGGCGCAGGTGAGTCACA---GTTAAAGGAG----------------------TCATAAGTC----------------------------------AGGGAAT------------------------------------------------------------------------------------------------------------------------------------------AATTTTT-------------------------------------------------------------------------------------------------------------------TATACAATTAATAT-TGCATTTTAA---------GCACA------------------------------------------ATATTAAGT---------------------------------------------------TTACAAT-ACTTATCCAAG-------------------------------------C----------------ACTGTTTAATCGCCAGCGGGTCTCATTTTTGTCTCTGGCGGCATGAACATTGCGTGGAGCATTGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
G---------------------------------TATAACCGAAACCAAAAGAACAAACCACAATCAAATGCAGCGGGCGCGGGTATGTTCAA---CCACTGAGAA-----------------------------------------------------------------------TTAGTCAGCTAGCCGTAAAAAGACCTGCTGTCG---------ATAAGATAGTC----CCTGTCAATCA--------------------------GCTTTG--------------------TAGTTCGCTGACGTGCAGGTTTTGCCCGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTCAGTGATCA----------ACTGATTGCTCA-------------------------------AAAATGT--------------------------TCCTG----------CATTA--ATTT--AATTTATAA-------------------TTCTATTAAATTAGCTGCACTCATCTTTCTATCGGGCGGCATGAATATAGCGTGGAGCGTTGGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGAATATAGCGTGGA........19114.00140011000000000001001000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCATCTTTCTATCGGGC...........................2116.006105000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACTCATCTTTCTATCGGGC...........................2213.003102000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCATCTTTCTATCGGGC...........................2012.002002000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCATGAATATAGCGTGGA........2111.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCATCTTTCTATCGGGCGGCATGA....................2811.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATATAGCGTGGAGC......1811.001001000000000000000000000000000000000000000000000000000000000000
...................................ATAACCGAAACCAAAAGAACAAACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.......................................................AAACCACAATCAAATGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
...................................ATAACCGAAACCAAAAGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATCA----------ACTGATTGCTCC-------------------------------.........................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTGCACTCATCTTTCTATCGGGC...........................2611.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGAATATAGCGTGGAGC......2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................GAACAAACCACAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCACTCATCTTTCTATCGGGC...........................2511.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTATCGGGCGGCATGAATATA...............2311.001000100000000000000000000000000000000000000000000000000000000000
..............................................................AATCAAATGCAGCGGGCGCGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCA----------ACTGATTGCTCA-------------------------------AAAATGT--------------------------T.......................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
G---------------------------------TACAACCGAAACCAGCGGAACAAGCCACAGTCCAATGCTGTGGGAGCTGGTACGTACGG---C-TGAATC--------------------------------------------ATC---------------------TGAAATTAGTCAGGTGGCCATAAAAATAAGTGCTCTAG---------ATAAGATGTAC----AGTGCCAATCT--------------------------ACCTTG--------------------CGCTTGGCTAACCTGATTGT-------GGGCT-------------TTTCAGC-TAGCCATTAATGCCCG--------------------------------------------------CAAAT----------------CA-----------------------------------------------------------------------------------------------------------------ATTACTAAATATAA---TT-----------------------------------------------------------------------------------TTCTCTATCTTCAGCTGCGCTCATCTTCGTTTCGGGTGGTATGAACATTGCCTGGAGCATTGGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................GTCCAATGCTGTGGGAGCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
...........................................AACCAGCGGAACAAGCCACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002100001
.............................................CCAGCGGAACAAGCCACAGTCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAACATTGCCTGGAGC......2011.001000001
.........................................GAAACCAGCGGAACAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..................................................................................GGTACGTACGG---C-TGAATC--------------------------------------------ATC---------------------TGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATGAACATTGCCTGGAGCATTG..2511.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTTCGTTTCGGGTGGT........................1911.001000001
..........................................AAACCAGCGGAACAAGCCACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTTCGTTTCGGGTGGTATGAAC..................2511.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATGAACATTGCCTGG.........1811.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATCTTCGTTTCGGGTGGTATGAAC..................2811.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATCTTCGTTTCGGGTGGT........................2211.001100000
droGri2
G---------------------------------TATAGCCGCAACCAGAGGAACAAACCGCAATCAAACGCTGCGGGTGCGGGTAAGTTCAA---CTG-GACG--------------------------------------------TTT---------------------CGAAATAAGTCTGCTGGCCATAAAAAGAACTGCAGCCG---------ATAAGATAGCC----TGCGTGAATCA--------------------------GGC-AG--------------------------------------TACTTGGTTGGGCTTACAATAAATTGTTTTCGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TA----------ACCGATTACTCTGAAGTCTCCTCAAATTCAATTACCAATCGAAG----------------------------------------------------------------------------------------TTTTCTCATTTCAGCTGCACTCATTTTTCTCACGGGTGGCATGAACATTGCTTGGAGCATGGGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................ATAGCCGCAACCAGAGGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
droWil2
G---------------------------------TATAGCCGTAATCAAAAAAATAAACCACAATCAAACTCCGCTAGCGTTGGTAAGTCCCA---CAACAGCATTTTAGTT--------------AGTCATCTGTTATAGATAGATAACTGTGTATACAT--------------------------------------------------------------------------------------------------------------ACCCCCTTGTTGCCACCCGTCACAATCGCTGGGATAT-TAG---AT-------AGGCT-------------TCTC-GC-TAATCA--------------------------TATCGCCCCTTATC-AATCGCGACGTGATCCTGGCAAAT----------------CAACAA-----------------------------------------------------------------------------------------------------------------------------TTAT--------------------------TA----------CGACCTTACTGTATACATATTTTAT-------------------CTCAATAAAATTAGCTGCTCTCATCTTCATCTCTGGCGGCATGAACATTGCCTGGAGCAGCGGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATCTTCATCTCTGGCGGC........................2113.00310200
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATCTTCATCTCTGGCGGCATGA....................2512.00210100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCTCATCTTCATCTCT..............................2111.00101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGCATGAACATTGCCTGGAGCAGC...2711.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTCTGGCGGCATGAACATT...............2211.00101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCATCTTCATCTCTGGCGGC........................2211.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCTCTGGCGGCATGAACATTGC.............2511.00101000
.......................................................AAACCACAATCAAACTCCGCTAGCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGAACATTGCCTGGAGC......2111.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACATTGCCTGGAGCAGC...2011.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCTCATCTTCATCTCTGG............................2111.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACATTGCCTGGAGCAGCGGT2411.00101000
.........................................GTAATCAAAAAAATAAACCACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATCTTCATCTCTGGCGG.........................2011.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGAACATTGCCTGGAGCAGCGGT2711.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACATTGCCTGGAGCAGC...2111.00101000
.........................................................ACCACAATCAAACTCCGCTAGCGTTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................C-AATCGCGACGTGATCCTGGC.............................................................................................................................................................................................................................................................................................................2111.00100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATCTTCATCTCTGGCGGCATG.....................2411.00100100
.........................................GTAATCAAAAAAATAAACCACAATCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACATTGCCTGGAGCA.....1911.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCTCTGGCGGCATGAA...................1911.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTCTGGCGGCATGAAC..................1911.00101000
dp5
C---------------------------------TTCAGTCGCGGCCAAACGAACAAGCCCCAATCGAATGCTGTGGGAGCTGGTGAGTAGCT---C--------------------------------------------------------------------------TGGGAATTAGTCATCTGCTCTGCAAT-------------GGAAATCCGATAAGATAG-----------------------------------------------------------------------------------------------------------------------------CCTTGAATGGGGGGCGGGGCCTATATTCATGGAATTGATTAAGAACCAGTGACGTCATCAGGCCAGAC----------------AAATTATA--TCATTTTG--ATGGGTCTTAATAGATTCCCATCTCATAGTACCTTTTTGTACTAGATAGACATGA----------AATGTATGCAAA-------------------------------ATTCTGT----------------------------------------------------------------------------------TCTTCCACTTTCAGCGGGTCTGATCTTTGTCTCGGGTGGAATGAACATTGCGTGGTCCATCGGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCTCGGGTGGAATG.....................1912.0020200000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGATCTTTGTCTCGGGT...........................2112.0020200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTCGGGTGGAATGAACATTGCGT...........2612.0020100100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCGGGTGGAATGAACATTG..............2212.0020200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCGGGTGGAATGAACATTGCGT...........2512.0020200000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCTCGGGTGGAATGAACATTGCGT...........2811.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATCTTTGTCTCGGGTGGAATG.....................2411.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGTCTCGGGTGGAAT......................1911.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGTCTCGGGTGGAATGAA...................2211.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGGTGGAATGAACATTGCGTGGTC.......2611.0010100000000
..............................................................AATCGAATGCTGTGGGAGCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAACATTGCGT...........1811.0010100000000
.........................................GCGGCCAAACGAACAAGCCCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..............................................CAAACGAACAAGCCCCAATCGAATGCTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010001000000
..............................................................AATCGAATGCTGTGGGAGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTTGTCTCGGGTGG.........................1811.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGTCTCGGGTGGAATG.....................2011.0010000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGATCTTTGTCTCGGGTG..........................2211.0010100000000
..............................................................AATCGAATGCTGTGGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------AAATTATA--TCATTTTG--ATGG.................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGATCTTTGTCTCGGGTGGAAT......................2611.0010100000000
.........................................................GCCCCAATCGAATGCTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATCTTTGTCTCGGGTGGA........................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGATCTTTGTCTCGG.............................1811.0010000000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAACATTGCGTGGT........1811.0010100000000
........................................................AGCCCCAATCGAATGCTGTGGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...............................................AAACGAACAAGCCCCAATCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
...........................................................CCCAATCGAATGCTGTGGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCTCGGGTGGAATGAA...................2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGTGGTCCATCGGG1811.0010100000000
.................................................................CGAATGCTGTGGGAGCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000000
droPer2
C---------------------------------TTCAGTCGCGGCCAAACGAACAAGCCCCAATCGAATGCTGTGGGAGCTGGTGAGTAGCT---C--------------------------------------------------------------------------TGGGAATTAGTCATCTGCTCTGCAAT-------------GGAAATCCGATAAGATAG-----------------------------------------------------------------------------------------------------------------------------CCTTGAATGGGGGGCGGGGCCTATATTCATGGAATTGATTAAGAACCAGTGACGTCATCAGGCCAGAC----------------AAATTATA--TCATTTTG--ATGGGTCTTAATAGATTCCCATCTCATAGTACCTTTTTGTACTAGATAGACATGA----------AATGTATGCAAA-------------------------------ATTCTGT----------------------------------------------------------------------------------TCTTCCACTTTCAGCTGGTCTGATCTTTGTCTCGGGTGGAATGAACATTGCGTGGTCCATCGGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATCTTTGTCTCGGGT...........................1813.003300000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCTGATCTTTGTCTCGG.............................2213.003300000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCTCGGGTGGAATGAAC..................2212.002010001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGATCTTTGTCTCGGGT...........................2012.002200000
..............................................................AATCGAATGCTGTGGGAGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGTCTCGGGTGGAATG.....................2012.002020000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAACATTGCGTGGT........1812.002000002
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGGGTGGAATGAACATTGCGTG..........2511.001010000
................................................................................................................................................................................ATTAGTCATCTGCTCTGCAAT-------------G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGGAATGAACATTGCGT...........2011.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATCTTTGTCTCGGGTGGAATG.....................2411.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGATCTTTGTCTCGGGTGGAAT......................2611.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGTCTCGGGTGGAATGAAC..................2311.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCTCGGGTGGAATGA....................1911.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACATTGCGTGGTCCATCGG.2111.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGGTGGAATGAACATTGCGT...........2311.001100000
............................................................CCAATCGAATGCTGTGGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGATCTTTGTCTCGGGT...........................2111.001100000
.........................................................GCCCCAATCGAATGCTGTGGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGAACATTGCGTGGTCC......2111.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGTCTCGGGTGGAATGAA...................2211.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCTCGGGTGGAATG.....................1911.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCTCGGGTGGAATGA....................2011.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCGGGTGGAATGAACATTGCGTGGT........2811.001100000
..............................................................AATCGAATGCTGTGGGAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droAna3
G---------------------------------ATGAGTCGCAATCAGAAGAATAAGCCACAATCAAATGCTGTGGGTGGAGGTGAGTCATACCAGTTCAAAGTCCAAA-----------------------------------------------------------------------------GATCTCAAAT-------------GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTATTATCTCTTGGGACTAAAATAT-------------------AATAAATAC-GTATTTCTCATTCAGCTGGCTTAATATTTGTATCCGGAGGAATGAACATAGCGTGGAGCATTGGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAGCGTGGAGCATTGGA1913.003000030
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATATTTGTATCCGGAGGAAT......................2311.001000010
..............................................................AATCAAATGCTGTGGGTGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGAACATAGCGTGGA........1911.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTAATATTTGTATCCGGAGGAAT......................2611.001000010
.................................................AAGAATAAGCCACAATCAAATGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGAGGAATGAACATAGCGTGGAGC......2811.001000010
............................................................ACAATCAAATGCTGTGGGTGGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACATAGCGTGGAGC......1811.001001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATATTTGTATCCGGAGGAATGAAC..................2611.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAACATAGCGTGGAGCAT....2211.001000010
...................................................GAATAAGCCACAATCAAATGCTGTGGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
droBip1
G---------------------------------TACAGTCGCAATCAGAGGAATAAGCCACAATCGAATGCTGTGGGAGGAGGTGAGTCATAGCAGTTCAAAGACCAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAAAAAAAG---TGT--------------------------TGTATAACCATTTGAGACTAATGT-------------------------------ATAACTAATTTTTAGCTGGCCTAATATTTGTATCTGGAGGAATGAACATAGCGTGGAGCATTGGASizeHit CountTotal NormTotal
No Reads
droKik1
G--------------------------------------------------------------------------------AGGTGAGTCAGA---GTCGATACTACAAAAATATATATAACAAAA--TC------------------ATTTACAGGGTAGATTGATGTTCTATCTTCTATCTATCTATTTTTCTAC-------------CTATCTGTCAATCGAT-------------------ATATCTATCGATCTATCTGTCTATCTATTTAT--------------------CTATCTACTGATCTACTGA-------------------------------------------------------------------------------------------------TCCATCTATATTTCTATCAA------------------TCT-------------------------------------------------------TCTACCTTCTGTAACAAATCTCTCTCACCCCTCCTAATAATCTTTTACAATTA----------------------------------------------------------------------------------------TT-AAACCCAATCCTTAGCGGCTCTCATTTTCGTGTCTGGAGGCATGAACATTGCGTGGAGCATTGGCSizeHit CountTotal NormTotal
No Reads
droFic1
ACAAACCACCACAGTGGTGGTGAACAATGGCTGGTACAGTCGCAATCAGAAGAACAAGCCCCAATCAAATGCAGTTGGCGCAGGTGAGTCGCA---ATCCAAAGTTTATT-----------------------------------------------------------------------------GTTCATAGAA------------------------------------------------ATATTTGGAAATTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTA--ATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTAATTT-ATTTCCTTCTCCTAGCTGGTTTAATTTTTGTTTCCGGTGGCATGAATATTGCGTGGAGCATTGGCSizeHit CountTotal NormTotal
No Reads
droEle1
G---------------------------------TACAGTCGCAACCAGAAGAACAAACCACAATCAAACGCAGTTGGCGCAGGTGAGTCACA---GATCAAAGTGCGGGGAA------------------------------------------------------------------------------------------------------------------------------------ATATGTTAAAGTCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTG--CAGTCA---------AAGCCAACTAATACTTACTTATA----------------------------------------------------------------------------T--------------------------TATTA----------TACTT--ATAT--TAGCTATAA---TGATCACTAAAATG-ACTTGCCTTTTGCAGCAAGTCTCATCTTTGTCTCTGGAGGAATGAACATTGCGTGGAGCATGGGCSizeHit CountTotal NormTotal
No Reads
droRho1
G---------------------------------TACAGTCGTAATCAGAAGAACAAACCACAATCAAATGCCGTTGGCGCAGGTGAGTCACA---CATCAAAGTACAAAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTTCAGTGAAAAA----------------ATAATATA--TTTATTTA--ATATAACTAAA------------------------------------------------------------------------------------------------------------A-TTTACATTCA---------C-------------------------------------AACTGATCACTAAAGTT-ATATCCCATTTTCAGCGAGTCTCATCTTCATCTCTGGAGGAATGAACATTGCGTGGAGCATTGGASizeHit CountTotal NormTotal
No Reads
droBia1
A---------------------------------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTATTATACAGCTGCCCTGATCTTCCTGACCGGTGGCATTCACATTGCCTGGAGCATTGGCSizeHit CountTotal NormTotal
No Reads
droTak1
G---------------------------------TACAGTCGCAATCAGAAGAACAAGCCACAATCGAATGCTGTTGGCGCAGGTGAGTCACG---GTTCAATGTACAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAG--ATTAATAT-AATTGGACCCTATCTGGTAGATAGTATCTACAATATATAGAATAAT----------AATTTAT--------------------------------------------------------------------C-------------------------------------AACTAAACACTTACC---TTTTTTCCTCTCCAGCGGGTCTTATTTTTGTCTCTGGTGGAATGAATATTGCGTGGTGCGTTGGTSizeHit CountTotal NormTotal
No Reads
droEug1
T---------------------------------TTTAAGCGCAACCGAAAGAACAAACCACAGTCCAATGCCGTGAGCCCAGGTGAGTTTAG---GTTTTTGGAT-------------------------------------------------------------T--------TTAGGTTTATTAACTATCAAAATTCTTGTGGCTA---------ATATCTTATCTAGTCCAC--GAATAA--------------------------TAT-GT--------------------------------------CTTATTCCTGGAACCACAGTAGATTATCTACCATGACGCCATTAATGGGTAGCAAG-TTTATGTTTATGA----------------------------TTCTCTTATATATTTTTTGGTTTAATATATAA--AATGG--CAATTTTAA---------CTGAT------------------------------------------CTAATGAGT---------------------------------------ATTT-----------------------------------------------------------------------------------TTCAAAACTTTCAGCCGGTCTCATCTTCCTCTCAGGAGGCATGAACATTGCGTGGGCCATTGGCSizeHit CountTotal NormTotal
No Reads
dm3
G---------------------------------TACAGTCGTAATCAGAAGAACAAGCCACAATCGAATGCTGTTGGAGCAGGTGAGTCAAA---GAAAAAAGAT--------------------------------------------TTTTAAGTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACA----------------------------------TTT--------------------TAA----AGTA----------------ATATTATA--TATATATGCATTGTAA---------CTACC------------------------------------------AAATTAA---------------------------------------ATATAGTACAAT-TTTACACTTAGCGAACTAAC-------------------------------------C----------------ACTGTTTAATCTCCAGCGGGTCTCATTTTCGTCTCTGGCGGTATGAATATTGCGTGGAGCATTGGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTGGCGGTATGAATATTGCGT...........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TCGTAATCAGAAGAACAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................GAAGAACAAGCCACAATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...........................................................CACAATCGAATGCTGTTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATGAATATTGCGTGGAGCATT...2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTGCGTGGAGCATTGG.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................AGTCGTAATCAGAAGAACAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............................................AGAAGAACAAGCCACAATCGAATGCTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................GTGAGTCAAA---GAAAAAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATGAATATTGCGTGG.........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.................................................................CGAATGCTGTTGGAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
droSim2
G---------------------------------TACAGTCGTAATCAGAAGAACAAGCCACAATCTAATGCTGTTGGAGCAGGTGAGTCAAA---GAAATATAAT--------------------------------------------TTTTAAAGTATA-----------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA----AAGA----------------ATATTATA--TATATGTG--TTGTAA---------ATACC------------------------------------------AAATTAA---------------------------------------ATACTGT---------------------------------------------------------------T----------------ACTGTTTTATCTCCAGCGGGTCTCATTTTTGTCTCTGGCGGTATGAACATTGCGTGGAGCATTGGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTCTCTGGCGGTATGAAC..................2212.00202000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTTTTGTCTCTGGC...........................1811.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTTTTGTCTCTGGCGG.........................1911.00100010000000000000
............................................................................GGAGCAGGTGAGTCAAA---GAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
..............................................................AATCTAATGCTGTTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
..............................................................AATCTAATGCTGTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATGAACATTGCGTGGAGT......2111.00100000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTCTCTGGCGGTATG.....................1911.00100100000000000000
..............................................................AATCTAATGCTGTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1620.50100000000001000000
droSec2
G---------------------------------TACAGTCGTAATCAGAAGAACAAGCCACAATCGAATGCTGTTGGAGCAGGTGAGTCAAA---GAAATATAAT--------------------------------------------TTTGAAAGTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACA---------------------------------------------------------TAA----AGTA----------------ATATTATA--TATATGTG--TTGTAA---------ATACC------------------------------------------AAATTAA---------------------------------------ATATTGT---------------------------------------------------------------T----------------ACCGTTTAATCTCCAGCGGGTCTCATTTTTGTCTCTGGCGGTATGAACATTGCGTGGAGCATTGGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................CACAATCGAATGCTGTTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020200
.....................................................ACAAGCCACAATCGAATGCTGTTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTTTGTCTCTGGCGGTATGAA...................2411.0011000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAACATTGCGTGGAGCAT....2111.0011000
G---------------------------------TACAGTCGTAATCAGAAGAACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
droYak3
G---------------------------------TACAGTCGTAATCAGAAGAACAAGCCACAATCTAATGCAGTTGGAGCAGGTGAGTCACA---GTTAAAGGTT--------------------------------------------TATGAAAGCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGA----------------------------------GTA--------------------ATA----AGGA----------------ATATACAA--AATAT--GCATTCCAA---------ATACA------------------------------------------GTATTGAGT---------------------------------------TTTTTAAAACATTTACAATTACTTATCTACC-------------------------------------C----------------ACTGTTT-AATTGCAGCGGGTCTCATTTTCGTCTCTGGCGGCATGAACATTGCGTGGAGCATTGGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTGGCGGCATGAACATTGCGTGG.........2712.00200000020000
.......................................................AAGCCACAATCTAATGCAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
....................................................AACAAGCCACAATCTAATGCAGTTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACATTGCGTGGAGCATT...2111.00100000010000
G---------------------------------TACAGTCGTAATCAGAAGAACAAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
............................................ATCAGAAGAACAAGCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCGGCATGAACATTGCGTGGAGC......2611.00101000000000
.......................................................................................................................................................ATGAAAGCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGA----------------------------------GTA--------------------ATA----AGG..........................................................................................................................................................................................................................................................................................................2311.00100000010000
...........................................................CACAATCTAATGCAGTTGGAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
G---------------------------------TACAGTCGTAATCAGAAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..............................................................AATCTAATGCAGTTGGAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCATTTTCGTCTCTGGCGGC........................2311.00100010000000
.....................................................ACAAGCCACAATCTAATGCAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCATTTTCGTCTCTGGCGGC........................2211.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTTTCGTCTCTGGCGGC........................2111.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCGGCATGAACATTGCGTGG.........2311.00101000000000
...........................................AATCAGAAGAACAAGCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
droEre2
G---------------------------------TACAGTCGCAATCAGAAGAACAAGCCACAATCAAATGCTGTTGGCGCAGGTGAGTCACA---GTTAAAGGAG----------------------TCATAAGTC----------------------------------AGGGAAT------------------------------------------------------------------------------------------------------------------------------------------AATTTTT-------------------------------------------------------------------------------------------------------------------TATACAATTAATAT-TGCATTTTAA---------GCACA------------------------------------------ATATTAAGT---------------------------------------------------TTACAAT-ACTTATCCAAG-------------------------------------C----------------ACTGTTTAATCGCCAGCGGGTCTCATTTTTGTCTCTGGCGGCATGAACATTGCGTGGAGCATTGGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
G---------------------------------TACAGTCGCAATCAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCTCATTTTTGTCTCTGGCGGC........................2511.0011000000
G---------------------------------TACAGTCGCAATCAGAAGAACAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
G---------------------------------TACAGTCGCAATCAGAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
...............................................AGAAGAACAAGCCACAATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACATTGCGTGGAGC......1811.0011000000
.....................................................ACAAGCCACAATCAAATGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTCTCATTTTTGTCTCTGGC...........................2311.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACATTGCGTGGAGCATT...2111.0011000000
G---------------------------------TACAGTCGCAATCAGAAGAACAAGCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
...........................................AATCAGAAGAACAAGCCACAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTTTTGTCTCTGGCGGC........................2111.0010001000

Generated: 05/16/2015 at 08:33 PM