ID:

dvi_20003

 Coordinate:

scaffold_13049:14871198-14871348 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.2 -8.2

Flybase annnotation

exon [dvir_GLEANR_11783:1]; CDS [Dvir\GJ11768-cds]; intron [Dvir\GJ11768-in]

No Repeatable elements found

Sense Strand Reads

----------------##################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CACTAGAGAAAAAGCAATGGCGCAACCACAACAACCGGCCTATGAAAACAGTAAGTTATACTTGATTCTAAAATTACCATAAAAGTAGTGAAAACAGCAATAGCGGCGTCGCCGAAAATGAGTCAGCCAAGAACGGTAAAAACAGCGGAAACGCTTTGATATGACCATAAATGGAATTCAGCTAGTCGGCGACGCAACGTAGTCGTAGACATATTCAGATAAACAGTAGTGCGGGCAGGGGGATCCCTTGA
*************************************************************************************************************************.....(((.....(((......((((....))))........))).....)))...............************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060667
160_females_carcasses_total
 V116
male body		 SRR1106729
mixed whole adult body
 SRR060681
Argx9_testes_total
 GSM1528803
follicle cells		 M027
male body		 M028
head
 M061
embryo
 SRR060655
9x160_testes_total
 SRR060656
9x160_ovaries_total
 SRR060658
140_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR1106717
embryo_6-8h
 SRR1106721
embryo_10-12h
 SRR1106724
embryo_12-14h
 SRR1106725
embryo_14-16h
 SRR060657
140_testes_total
 M047
female body
 SRR060662
9x160_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR1106727
larvae
........................ACCACAACAACCGGCCTA................................................................................................................................................................................................................. 18 0 1 7.00 7 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0
.ACTAGAGAAAAAGCAATGGCGC.................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GAGAAAAAGCAATGGCGCAAC................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............CAATGGCGCAACCACAACAACC....................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CACTAGAGAAAAAGCAATGGCGCAAC................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GTCAGCCAAGAACGGTAAA............................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........AAGCAATGGAGCAACCACAACAACCGGC.................................................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................AAGAAGTGAAAACAGCAATAGCGG................................................................................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.ACTAGAGAAAAAGCAATG........................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.ACTAGAGAAAAAGCAATGGCG..................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GCTAGTCGGCGACGCAACGTAGTCGTA............................................ 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................ATGAAAACAGTAAGTTATACT............................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........AAAAGCAATGGCGCAACCACAAC........................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............GCAATGGCGCAACCACAACAACCGGCC................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................AAATGGAATTCAGCTAGTCGG.............................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................ATAAATGGAATTCAGCTAGTCGG.............................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................AGTGAAAACAGCAATAGCGGCGTCGCCGA........................................................................................................................................ 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GTCGGCGACGCAACGTAGTCG.............................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................CAACCACAACAACCGGCCTA................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.ACTAGGGAAAAAGAAATGGC...................................................................................................................................................................................................................................... 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................ATTCAGCTGGTCGGC............................................................. 15 1 15 0.33 5 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........AAAAGGCAGTGGCTCAACCAC.............................................................................................................................................................................................................................. 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................GGGATTCAGCTGGTCGGCGT........................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................AACATAAAAGTAGTGAAAAAA........................................................................................................................................................... 21 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TGTGGGTAGGGGAATCCC.... 18 3 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0
................................AACCGGCGTAAGAAAACA......................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........AAAGGCAGTGGCTCAACCA............................................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0
......................................................................................................................TGAGAGATCCAAGAACGGT.................................................................................................................. 19 3 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................ATATGACCATCAATG.............................................................................. 15 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........AAAAGGCAGTGGCTCAACCA............................................................................................................................................................................................................................... 20 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................GGATTCAGCTGGTCGGC............................................................. 17 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTGATCTCTTTTTCGTTACCGCGTTGGTGTTGTTGGCCGGATACTTTTGTCATTCAATATGAACTAAGATTTTAATGGTATTTTCATCACTTTTGTCGTTATCGCCGCAGCGGCTTTTACTCAGTCGGTTCTTGCCATTTTTGTCGCCTTTGCGAAACTATACTGGTATTTACCTTAAGTCGATCAGCCGCTGCGTTGCATCAGCATCTGTATAAGTCTATTTGTCATCACGCCCGTCCCCCTAGGGAACT
**************************************************************.....(((.....(((......((((....))))........))).....)))...............************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060669
160x9_females_carcasses_total
 SRR060687
9_0-2h_embryos_total
 SRR1106728
larvae
 SRR060684
140x9_0-2h_embryos_total
 M047
female body
 SRR060681
Argx9_testes_total
 V053
head
...........................................................................TGGTCTCTTCATCACTTTTGAC.......................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................................................CGGTCAGCCGCTGCGTCGCGTC................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................ATTTGTCATCACGCCCGTCCC........... 21 0 1 1.00 1 0 0 1 0 0 0 0
......TCTTTCTCGCTACCGCATTG................................................................................................................................................................................................................................. 20 3 3 0.33 1 0 0 0 1 0 0 0
....................................................................ATTTTATTGCAATTTTCATCAC................................................................................................................................................................. 22 3 5 0.20 1 0 0 0 0 1 0 0
...............................................................................................................................GTTCTTGCGATTTTTGAC.......................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 1 0
.............................................CTTGTCATTCAATATGGGC........................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:14871148-14871398 - dvi_20003 CACTAGAGAAA--------A-AGCAATGGCGCAACCACAACAACCGGCCTATGAAAACAGTAAGTTATACTTGATTC---------------------------TAA--AATTACCATAAAAG---T------------------------------------------------A------------------------GTGAAAACAGCAATAGCGGCGT------CG-C-CGAAAATGAGTCAGC---CAAG----------------------------AACGGTAAAAACAG-------------CGGAAACGCTTT-GA-TATGACCATAAATGGAATTCAGCTA-------GTCGGCGAC-------GCAACGTAGTC--GTAGACATA-----TTCAGATAA--ACAG-------TA------------------GTGCGGG--CAGGG-G---------GATCCCTT----------------------------GA
droMoj3 scaffold_6680:19656011-19656255 - CACTAAAAGAA--------G-TGAAATGGCGCAACCACAAAAACCCGACTACGAAAACAGTGAGTTATATTAGTTTA---------------------------AAA--AATGTCCATAAAAG---T------------------------------------------------A------------------------TTGAGAAAGCTGACAGCAGCGA------CG-G-TGAAAATGAGTCAGCCGGC-------------------------------AACGGTAAAAACAG-------------CGGAAGCACTCT-GA-TATGACCATAAATGGCATTC--ACGCAT-----TCGTCGTC-------GCAGAGCGG-----------TG-----TTTAGATAA--ACAA--------A------------------GTGCGGG--AAGTGGGGAG------------------TAG-----C-C---C-----TT--GA
droGri2 scaffold_15110:17855825-17856103 + CACTAGAGAGT--------T-AATAATGGCGCAACCACAACAACCGGCCTACGAAAACAGTGAGTTTTG----ATTC------------------GC----AACCAC--AATTACCATAAGAG--TGAA----------------------------------------------A------------------------GCGACGC---------------GAAA-AAA-AATACATATGAGTCAAC---CAAG----------------------------AACGGTAAAAACAG-------------CGGAAATGCTTTTTGATATGACCATAAATGGAATTTG------TGTGAAACGACAACAACAAAAGCAGCGCAGTC--GACGACAAACACACTTCAGATAA--ACAATAGAGTGTG---G--GTGAGG------G--AGGG--------------------TCAGAGGGGATA------TCC---C-----TTAATT
droWil2 scf2_1100000004511:245668-245901 - dwi_460 -------------------------ATGGCTCAACCGCAACCACCGGCCTATGAAAATAGTGAGTTAAA----ATGCA-ATGTA--AAAT-A------------------------------------------------TCAGCATGACCTTATTTGGTCATACCAAAAACAAAAAAAGAAAGAAAAAAAGAGAAAAG----AGA----------------AGTGA-AA-T-GGAGAATGAGTCAGTCAGTCAACGCAAAATAAAAAAGAAACGAAACTCGAAACGGTAAA-TCAA-ATACA--AACGCCGGAAGCGCTCTCGATTATGACCATAAATGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group8:6381032-6381297 - G----------------------CAATGGCTCAACCTCAACCACCAGCCTATGAAAACAGTGAGTGTGC----CTGCCAAGA-G--TATCAG--CACATTA------GG------------------TGCTTAAAAATTTCACCAA---------------------------------------------------------------CCGACTGC-----GTC---CGCA-GCGGAATGAGTCAACCAGCAAA----------------------------AACGGTAAAAGCAGAAAGCA--ATCGCCGGAAGCGCCAT-GATTATGCCCATAAATGGTCAGGAGCTGTTC--TTGTCGGCG----------------------------ATT-----GA----TGA--GTAG-------TA---G----------GAGA---AGGG--------GGAC------GAA-AACTACAGCGGCTTCTATCTCCCTC---TCTATG
droPer2 scaffold_45:101304-101569 + G----------------------CAATGGCTCAACCTCAACCACCAGCCTATGAAAACAGTGAGTGTGC----CTGCCAAGA-G--TATCAG--CGCATTA------GG------------------TGCTTAAAAATTTCACCAA---------------------------------------------------------------CCGACTGC-----GAC---CGCA-GCGGAATGAGTCAACCAGCAAA----------------------------AACGGTAAAAGCAGAAAGCA--ATCGCCGGAAGCGCCAT-GATTATGCCCATAAATGGTCAGGAGCTGTTC--TTGTCGGCG----------------------------ATT-----GA----TGA--GTAG-------TA---G----------GAGA---AGGG--------GGACGAAAACG-ACAGCGGCTTCTATCTCAC-C---C-----TCTATG
droAna3 scaffold_13337:21465705-21465949 - dan_2767 AA--------------------GCAATGGCGCAACCTCAGCCCCCGGCCTACGAAAACAGTGAGTTGGC----ATGCA-AGAAT--AGTT-G------------------------------------------------CCGGCATGG---TATATAGAC-TCCTATAGACTGCATTGAAGAGAAAAGAGAAGAAAAGA------------------------A---AG-A-AGGGGATGAGTCAACAAGCGAA----------------------------AACGGTAAAAGCTTAAACC---ACCGCCGGAAGCGCCGA-GATTATGCCCATAAATGGGCACCCATTGCTC--GATGG------------------------------------------------G--GCAG-------TT-----------G------G--TGGGGGC-------AG------------------GGGCCCCAC-----------------
droBip1 scf7180000396730:25453-25710 - CACAAGAGCGG----ATCACAAGCAATGGCGCAACCTCAGCCCCCGGCCTACGAAAACAGTGAGTTGGC----ATGCA-AGAAT--AGTT-G------------------------------------------------CCGGCATGG---TGTATAGAC-TCCCATAGACTGCAGTGAAGAGAAAAAAGAAGAAAAGA------------------------AA--TG-A-AGGGGATGAGTCAACAAGCGAA----------------------------AACGGTAAAAGCTTAAACC---ACCGCCGGAAGCGCCGA-GATTATGCCCATAAATGGGCAGCCGGTGCTC-------GGCG------------------------------------------------C-G-------TT-----------G------G--TGGGGGC-------AG------------------GGACCCCAC-----------------
droKik1 scf7180000302808:122671-122929 - AG----G--------AACAC-AACAATGGCTCAGCCCCAACCACCAGCCTACGAAAACAGTGAGTTGGC----ATGCA-AGAGAATGATA-GCCCAA----TTTGGTGG------------------TGTTCAAGAGTTGCCGGCA---------------------------------------------------------------TTGAC-GT-----GACG--AG-AAGGGGGATGAGTCAACAAGCGAA----------------------------AACGGTAAAAGCAGAAAGCC--ATCGCCGGAAGCGTCGT-GATTATGCCCATAAATGGACAGACGCCGCA--------------------------------------------------------------G-------CAAGAT-------AAAGGGGCTGCGGG--------------------GAGGTG-GCTCCA-----CCCTTGCACTCT-TTTGT
droFic1 scf7180000454048:300648-300916 - CACAAGAACAGAAGAACCAC-CGCAATGGCTCAACCCCAACCACCGGCGTACGAAAACAGTGAGTTGGC----ATCCC-AAAGA--GATA-AACCAC----ATTGAT--AGACTCAATGCAAATCGC------------------------------------------------T------------------------GTGAAAA---------------GCGG--TG-A-AGGGGATGAGTCAACAGGCGAA----------------------------AACGGTAAAAGCAGAAAGCAA-ATCGCCGGAAGCGCCGT-GATTATGACCATAAATGGGCATAGCCTGCAA----------------------------ATG--ATA----TT-----TG----T-----TA---------T-TAG----------GGGA---CGGG--------------------GCAGTGGGAGTCACC---TTG---CTGTCC----CT
droEle1 scf7180000491255:1845924-1846158 + G----------------------CAATGGCTCAACCGCAACCACCGGCGTACGAAAACAGTGAGTTGGC----ACCAC-AGAAT--CAAA-AGCCCC----ATTGAT--AATCTCAGTCCAAATCGGAA----------------------------------------------C-----------------------------------------------------GAAGGGGGGATGAGTCAACAGGCGAA----------------------------AACGGTAAAAGCAGAAAGCAAAATCGCCGGAAGCGCCGT-GATTATGCCCATAAATGGGCATAG-CTGCAT----------------------------ATG--ATAGACCTC-----TA----CAAAAACT-----------GTG----------GAGT---GGGG--------GGAT------GA------------CCCCCAT-----------------
droRho1 scf7180000778068:23773-24023 - CACAAGAACAGAGGAACCAC-CGCAATGGCTCAACCGCAACCACCGGCGTACGAAAACAGTGAGTTGGC----ACCCC-AGAAT--TAAA-TACCCC----ATTGAC--AATCTCAATCCAAGTCGGAA----------------------------------------------T-----------------------------------------------------AAA-GGGGGATGAGTCAACAGGCGAA----------------------------AACTGTAAAAGCAAAAAGCAAAATCGCCGGAAGCGCCGT-GATTATGCCCATAAATGGGCATAG-CTGTA-----------------------------ATG--ATAGACCTG-----CA----TAAAAACA------------AG----------GGGG---CGGG--------G------------CA---------------T-C---CCG------ACG
droBia1 scf7180000302428:1387259-1387503 - G----------------------CAATGGCTCAACCCCAACCACCGGCGTACGAAAACAGTGAGTTGGC----ATCCC-ACAGT--GATA-GACCAC----ATTCA---AAACCCGATCCCCATCGCCA----------------------------------------------T--------------------------GAGAC---------------GGTG--TGCA-GGGGGATGAGTCAACAGGCGAA----------------------------AACGGTAAAAGCAGAAAGCA--ATCGCCGGAAGCGCCGT-GATTATGCCCATAAATGGTCATGGGCTGCAC----------------------------TCG--CACGACCTC-----TG----A------AG-------TT-TTCGGGGGGTG------G--CGGG--------------------GCAGTGGGAGCCA-----C-----------------
droTak1 scf7180000415332:96856-97112 - G----------------------CAATGGCTCAACCCCAACCACCGGCGTACGAAAACAGTAAGTTGGC----ATCCC-ACAGT--GATA-AACCGC----AGCCTT--AAACCCGCTCCAAATGGT------------------------------------------------G------------------------GTGAGTCG--------------GCTG--AG-AGGGGGGATGAGTCAACAGGCGAA----------------------------AACGGTAAAAGCAGAAAGCAA-ATCGCCGGAAGCGCCGT-GATTATGCCCATAAATGGGCATAG-CTGCAT----------------------------ATGAGAAAGACCTT-----TA----G------AG-------TT-TAGGGGGAAGG----GA---AGGG--------GGAG-------------GGGAGCCA-----C-C---C-----TGGCGA
droEug1 scf7180000409707:364718-364957 + G----------------------CAATGGCTCAACCCCAACCACCGGCGTACGAAAACAGTGAGTTGGC----ATCCC-ACAAT--GATA-AACCAC----ATTCAT--AAAACCGATCCAAATCGGTA----------------------------------------------T------------------------TTGAGAG-----------------AG--TGAA-GGGGGATGAGTCAACAGGCGAA----------------------------AACGGTAAAAGCAGAAAGCA--AACGCCGGAAGCGCCGT-GATTATGCCCATAAATGGGCATAG-CTGCAT---------------------------AATG--AAAGACCTT-----TA----A------AG-------TT--AG----------GAGG---CGGGGTG-------AG--------ACATTTA---------------------------GA
dm3 chr3L:13406041-13406305 + ------------------------AATGGCACAACCCCAACCACCGGCGTACGAAAACAGTGAGTTGGA----ATCCC-ACAGA--GATA-AACTGG----AGTCAT--GAATCCGATCCCACTCCGAA----------------------------------------------T------------------------GTGATAC---------------GTAG--AG-A-GGGGGATGAGTCAACAGGCGAA---------------------------AAACGGTAAAAGCAGAAAGCA--ATCGCCGGAAGCACCGT-GATTATGCCCATAAATGGGCATAG-ATGCAT----------------------------ATG--AAAGACCTT-----TT----TAA--GCAG-------TAAGAG----------GAGG---CGCG--------TGTG------GAGCCGTTGGAGCGACCCCGTTC---CCGT-T----CG
droSim2 3l:13108176-13108452 + dsi_13253 GAGAA----------AACAC-CACAATGGCACAACCCCAACCACCGGCGTACGAAAACAGTGAGTTGGA----ATCCC-ACAGA--GATA-AACTGC----AGTCAT--GAATCCGATCCCACTCCGAA----------------------------------------------T------------------------GTGATAC---------------GTAG--AG-A-GGGGGATGAGTCAACAGGCGAA---------------------------AAACGGTAAAAGCAGAAAGCA--ATCGCCGGAAGCGCCGT-GATTATGCCCATAAAAGGGCATAG-CTGCAT----------------------------ATG--AAAGACCTT-----TT----TAA--GCAG-------TT-GAG----------GGGG---CGGG--------GGAG------GAGCCGTTGGAGCGACCCCATTC---CCGT-T----CG
droSec2 scaffold_0:5580738-5581002 + -----------------------CAATGGCACAACCCCAACCACCGGCGTACGAAAACAGTGAGTTGGA----ATCCC-ACAGA--GATA-AACTGC----AGTCAT--GAATCCGATCCCACTCCGAA----------------------------------------------T------------------------GTGATAC---------------GTAG--AG-A-GGGGGATGAGTCAACAGGCGAA---------------------------AAACGGTAAAAGCAGAAAGTA--ATCGCCGGAAGCGCCGT-GATTATGCCCATAAATGGGCATAG-CTGCAT----------------------------ATG--AAAGACCTT-----TT----TAA--GCAG-------TT-GAG----------GGGG---CGGG--------GGAG------GAGCCGTTGGAGCGACCCCATTC---CCGT-T----CG
droYak3 3L:13504556-13504819 + -----------------------CAATGGCTCAACCCCAACCACCGGCGTACGAAAACAGTGAGTTGGA----ATCCC-ACAGA--GATA-AACCGC----AGTCAT--GAATCCGATCCGAATGCGAA----------------------------------------------T------------------------GTGACTC---------------GTAG--AG-A-AGGGGATGAGTCAACAGGCGAA---------------------------AAACGGTAAAAGCAGAAAGCA--ATCGCCGGAAGCGCCGT-GATTATGCCCATAAATGGGCATTG-CTGCAT----------------------------ATG--AAAGACCTT-----TG----TAA--GCAG-------TT-GAG----------GGGG---CGGG---------GTG------GAGCAGTTGGAGCGACCCCATTC---CCGT-T----CG
droEre2 scaffold_4784:13418010-13418254 + -----------------------CAATGGCTCAACCCCAACCACCGGCGTACGAAAACAGTGAGTTGGA----ATCCC-ACAGA--GATA-AACTAC----AGTCAT--GAATCCGATCCGAATCCGAA----------------------------------------------T------------------------GTGATTC---------------GCTG--AG-A-AGGGGATGAGTCAACAGGCGAA---------------------------AAACGGTAAAAGCAGAAAGTA--ATCGCCGGAAGCGCCGT-GATTATGCCCATAAATGGGCATAG-CTGCAT----------------------------ATG--AAAGACCTT-----TT----AAG--GCAG-------TT-GAG----------GGGG---CGGG--------GGAG------GAGCAGTTG----------------------------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CACTAGAGAAA--------A-AGCAATGGCGCAACCACAACAACCGGCCTATGAAAACAGTAAGTTATACTTGATTC---------------------------TAA--AATTACCATAAAAG---T------------------------------------------------A------------------------GTGAAAACAGCAATAGCGGCGT------CG-C-CGAAAATGAGTCAGC---CAAG----------------------------AACGGTAAAAACAG-------------CGGAAACGCTTT-GA-TATGACCATAAATGGAATTCAGCTA-------GTCGGCGAC-------GCAACGTAGTC--GTAGACATA-----TTCAGATAA--ACAG-------TA------------------GTGCGGG--CAGGG-G---------GATCCCTT----------------------------GASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................ACCACAACAACCGGCCTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1817.007000000000000000000000000100000000000000000000100010011000200000
.ACTAGAGAAA--------A-AGCAATGGCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000100000000000000000000000000000000000000000000000000000000
.....GAGAAA--------A-AGCAATGGCGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
.......................CAATGGCGCAACCACAACAACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
CACTAGAGAAA--------A-AGCAATGGCGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000001000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................GTCAGC---CAAG----------------------------AACGGTAAA......................................................................................................................................................................................................................1911.001000000000000000010000000000000000000000000000000000000000000000
.ACTAGAGAAA--------A-AGCAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000010000000000000000000000000000000000000
.ACTAGAGAAA--------A-AGCAATGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................GCTA-------GTCGGCGAC-------GCAACGTAGTC--GTA....................................................................................................................2711.001100000000000000000000000000000000000000000000000000000000000000
..................................................ATGAAAACAGTAAGTTATACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.........AA--------A-AGCAATGGCGCAACCACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
......................GCAATGGCGCAACCACAACAACCGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000001
...............................................................................................................................................................................................................................................................................................................................................AAATGGAATTCAGCTA-------GTCGG...............................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................ATAAATGGAATTCAGCTA-------GTCGG...............................................................................................................................................2311.001000000001000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................A------------------------GTGAAAACAGCAATAGCGGCGT------CG-C-CGA..............................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................GTCGGCGAC-------GCAACGTAGTC--G......................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
...............................CAACCACAACAACCGGCCTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
droMoj3
CACTAAAAGAA--------G-TGAAATGGCGCAACCACAAAAACCCGACTACGAAAACAGTGAGTTATATTAGTTTA---------------------------AAA--AATGTCCATAAAAG---T------------------------------------------------A------------------------TTGAGAAAGCTGACAGCAGCGA------CG-G-TGAAAATGAGTCAGCCGGC-------------------------------AACGGTAAAAACAG-------------CGGAAGCACTCT-GA-TATGACCATAAATGGCATTC--ACGCAT-----TCGTCGTC-------GCAGAGCGG-----------TG-----TTTAGATAA--ACAA--------A------------------GTGCGGG--AAGTGGGGAG------------------TAG-----C-C---C-----TT--GASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................CGCAACCACAAAAACCCGACTACGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.......................................AAAACCCGACTACGAAAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
..........................................ACCCGACTACGAAAACAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100
droGri2
CACTAGAGAGT--------T-AATAATGGCGCAACCACAACAACCGGCCTACGAAAACAGTGAGTTTTG----ATTC------------------GC----AACCAC--AATTACCATAAGAG--TGAA----------------------------------------------A------------------------GCGACGC---------------GAAA-AAA-AATACATATGAGTCAAC---CAAG----------------------------AACGGTAAAAACAG-------------CGGAAATGCTTTTTGATATGACCATAAATGGAATTTG------TGTGAAACGACAACAACAAAAGCAGCGCAGTC--GACGACAAACACACTTCAGATAA--ACAATAGAGTGTG---G--GTGAGG------G--AGGG--------------------TCAGAGGGGATA------TCC---C-----TTAATTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
-------------------------ATGGCTCAACCGCAACCACCGGCCTATGAAAATAGTGAGTTAAA----ATGCA-ATGTA--AAAT-A------------------------------------------------TCAGCATGACCTTATTTGGTCATACCAAAAACAAAAAAAGAAAGAAAAAAAGAGAAAAG----AGA----------------AGTGA-AA-T-GGAGAATGAGTCAGTCAGTCAACGCAAAATAAAAAAGAAACGAAACTCGAAACGGTAAA-TCAA-ATACA--AACGCCGGAAGCGCTCTCGATTATGACCATAAATGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................GA----------------AGTGA-AA-T-GGAGAATGA........................................................................................................................................................................................................................................................................1911.00100001
...............................................................................................................................................................................................................................GTGA-AA-T-GGAGAATGAGTCAGTCAGT..............................................................................................................................................................................................................................................................2611.00100100
........................................................................................................................................................................................AAAAAAAGAGAAAAG----AGA----------------............................................................................................................................................................................................................................................................................................18140.07100010
dp5
G----------------------CAATGGCTCAACCTCAACCACCAGCCTATGAAAACAGTGAGTGTGC----CTGCCAAGA-G--TATCAG--CACATTA------GG------------------TGCTTAAAAATTTCACCAA---------------------------------------------------------------CCGACTGC-----GTC---CGCA-GCGGAATGAGTCAACCAGCAAA----------------------------AACGGTAAAAGCAGAAAGCA--ATCGCCGGAAGCGCCAT-GATTATGCCCATAAATGGTCAGGAGCTGTTC--TTGTCGGCG----------------------------ATT-----GA----TGA--GTAG-------TA---G----------GAGA---AGGG--------GGAC------GAA-AACTACAGCGGCTTCTATCTCCCTC---TCTATGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................GCTCAACCTCAACCACCAGCCTATGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...............................................................................................................................................................................................................................TC---CGCA-GCGGAATGAGTCAACCAGCA.............................................................................................................................................................................................................................................................2611.0010100000000
.................................................................................................................................................................................................................................................................................................................ATCGCCGGAAGCGCCAT-GATTATGCCCA............................................................................................................................................................................2811.0010100000000
droPer2
G----------------------CAATGGCTCAACCTCAACCACCAGCCTATGAAAACAGTGAGTGTGC----CTGCCAAGA-G--TATCAG--CGCATTA------GG------------------TGCTTAAAAATTTCACCAA---------------------------------------------------------------CCGACTGC-----GAC---CGCA-GCGGAATGAGTCAACCAGCAAA----------------------------AACGGTAAAAGCAGAAAGCA--ATCGCCGGAAGCGCCAT-GATTATGCCCATAAATGGTCAGGAGCTGTTC--TTGTCGGCG----------------------------ATT-----GA----TGA--GTAG-------TA---G----------GAGA---AGGG--------GGACGAAAACG-ACAGCGGCTTCTATCTCAC-C---C-----TCTATGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................ATT-----GA----TGA--GTAG-------TA---G----------GAGA---A...........................................................2012.002000002
G----------------------CAATGGCTCAACCTCAACCACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
........................AATGGCTCAACCTCAACCACCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
droAna3
AA--------------------GCAATGGCGCAACCTCAGCCCCCGGCCTACGAAAACAGTGAGTTGGC----ATGCA-AGAAT--AGTT-G------------------------------------------------CCGGCATGG---TATATAGAC-TCCTATAGACTGCATTGAAGAGAAAAGAGAAGAAAAGA------------------------A---AG-A-AGGGGATGAGTCAACAAGCGAA----------------------------AACGGTAAAAGCTTAAACC---ACCGCCGGAAGCGCCGA-GATTATGCCCATAAATGGGCACCCATTGCTC--GATGG------------------------------------------------G--GCAG-------TT-----------G------G--TGGGGGC-------AG------------------GGGCCCCAC-----------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................AATGGCGCAACCTCAGCCCCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droBip1
CACAAGAGCGG----ATCACAAGCAATGGCGCAACCTCAGCCCCCGGCCTACGAAAACAGTGAGTTGGC----ATGCA-AGAAT--AGTT-G------------------------------------------------CCGGCATGG---TGTATAGAC-TCCCATAGACTGCAGTGAAGAGAAAAAAGAAGAAAAGA------------------------AA--TG-A-AGGGGATGAGTCAACAAGCGAA----------------------------AACGGTAAAAGCTTAAACC---ACCGCCGGAAGCGCCGA-GATTATGCCCATAAATGGGCAGCCGGTGCTC-------GGCG------------------------------------------------C-G-------TT-----------G------G--TGGGGGC-------AG------------------GGACCCCAC-----------------SizeHit CountTotal NormTotal
No Reads
droKik1
AG----G--------AACAC-AACAATGGCTCAGCCCCAACCACCAGCCTACGAAAACAGTGAGTTGGC----ATGCA-AGAGAATGATA-GCCCAA----TTTGGTGG------------------TGTTCAAGAGTTGCCGGCA---------------------------------------------------------------TTGAC-GT-----GACG--AG-AAGGGGGATGAGTCAACAAGCGAA----------------------------AACGGTAAAAGCAGAAAGCC--ATCGCCGGAAGCGTCGT-GATTATGCCCATAAATGGACAGACGCCGCA--------------------------------------------------------------G-------CAAGAT-------AAAGGGGCTGCGGG--------------------GAGGTG-GCTCCA-----CCCTTGCACTCT-TTTGTSizeHit CountTotal NormTotal
No Reads
droFic1
CACAAGAACAGAAGAACCAC-CGCAATGGCTCAACCCCAACCACCGGCGTACGAAAACAGTGAGTTGGC----ATCCC-AAAGA--GATA-AACCAC----ATTGAT--AGACTCAATGCAAATCGC------------------------------------------------T------------------------GTGAAAA---------------GCGG--TG-A-AGGGGATGAGTCAACAGGCGAA----------------------------AACGGTAAAAGCAGAAAGCAA-ATCGCCGGAAGCGCCGT-GATTATGACCATAAATGGGCATAGCCTGCAA----------------------------ATG--ATA----TT-----TG----T-----TA---------T-TAG----------GGGA---CGGG--------------------GCAGTGGGAGTCACC---TTG---CTGTCC----CTSizeHit CountTotal NormTotal
No Reads
droEle1
G----------------------CAATGGCTCAACCGCAACCACCGGCGTACGAAAACAGTGAGTTGGC----ACCAC-AGAAT--CAAA-AGCCCC----ATTGAT--AATCTCAGTCCAAATCGGAA----------------------------------------------C-----------------------------------------------------GAAGGGGGGATGAGTCAACAGGCGAA----------------------------AACGGTAAAAGCAGAAAGCAAAATCGCCGGAAGCGCCGT-GATTATGCCCATAAATGGGCATAG-CTGCAT----------------------------ATG--ATAGACCTC-----TA----CAAAAACT-----------GTG----------GAGT---GGGG--------GGAT------GA------------CCCCCAT-----------------SizeHit CountTotal NormTotal
No Reads
droRho1
CACAAGAACAGAGGAACCAC-CGCAATGGCTCAACCGCAACCACCGGCGTACGAAAACAGTGAGTTGGC----ACCCC-AGAAT--TAAA-TACCCC----ATTGAC--AATCTCAATCCAAGTCGGAA----------------------------------------------T-----------------------------------------------------AAA-GGGGGATGAGTCAACAGGCGAA----------------------------AACTGTAAAAGCAAAAAGCAAAATCGCCGGAAGCGCCGT-GATTATGCCCATAAATGGGCATAG-CTGTA-----------------------------ATG--ATAGACCTG-----CA----TAAAAACA------------AG----------GGGG---CGGG--------G------------CA---------------T-C---CCG------ACGSizeHit CountTotal NormTotal
No Reads
droBia1
G----------------------CAATGGCTCAACCCCAACCACCGGCGTACGAAAACAGTGAGTTGGC----ATCCC-ACAGT--GATA-GACCAC----ATTCA---AAACCCGATCCCCATCGCCA----------------------------------------------T--------------------------GAGAC---------------GGTG--TGCA-GGGGGATGAGTCAACAGGCGAA----------------------------AACGGTAAAAGCAGAAAGCA--ATCGCCGGAAGCGCCGT-GATTATGCCCATAAATGGTCATGGGCTGCAC----------------------------TCG--CACGACCTC-----TG----A------AG-------TT-TTCGGGGGGTG------G--CGGG--------------------GCAGTGGGAGCCA-----C-----------------SizeHit CountTotal NormTotal
No Reads
droTak1
G----------------------CAATGGCTCAACCCCAACCACCGGCGTACGAAAACAGTAAGTTGGC----ATCCC-ACAGT--GATA-AACCGC----AGCCTT--AAACCCGCTCCAAATGGT------------------------------------------------G------------------------GTGAGTCG--------------GCTG--AG-AGGGGGGATGAGTCAACAGGCGAA----------------------------AACGGTAAAAGCAGAAAGCAA-ATCGCCGGAAGCGCCGT-GATTATGCCCATAAATGGGCATAG-CTGCAT----------------------------ATGAGAAAGACCTT-----TA----G------AG-------TT-TAGGGGGAAGG----GA---AGGG--------GGAG-------------GGGAGCCA-----C-C---C-----TGGCGASizeHit CountTotal NormTotal
No Reads
droEug1
G----------------------CAATGGCTCAACCCCAACCACCGGCGTACGAAAACAGTGAGTTGGC----ATCCC-ACAAT--GATA-AACCAC----ATTCAT--AAAACCGATCCAAATCGGTA----------------------------------------------T------------------------TTGAGAG-----------------AG--TGAA-GGGGGATGAGTCAACAGGCGAA----------------------------AACGGTAAAAGCAGAAAGCA--AACGCCGGAAGCGCCGT-GATTATGCCCATAAATGGGCATAG-CTGCAT---------------------------AATG--AAAGACCTT-----TA----A------AG-------TT--AG----------GAGG---CGGGGTG-------AG--------ACATTTA---------------------------GASizeHit CountTotal NormTotal
No Reads
dm3
------------------------AATGGCACAACCCCAACCACCGGCGTACGAAAACAGTGAGTTGGA----ATCCC-ACAGA--GATA-AACTGG----AGTCAT--GAATCCGATCCCACTCCGAA----------------------------------------------T------------------------GTGATAC---------------GTAG--AG-A-GGGGGATGAGTCAACAGGCGAA---------------------------AAACGGTAAAAGCAGAAAGCA--ATCGCCGGAAGCACCGT-GATTATGCCCATAAATGGGCATAG-ATGCAT----------------------------ATG--AAAGACCTT-----TT----TAA--GCAG-------TAAGAG----------GAGG---CGCG--------TGTG------GAGCCGTTGGAGCGACCCCGTTC---CCGT-T----CGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................ACCGGCGTACGAAAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.............................................GGCGTACGAAAACAGTGAGTTGGA----A................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AG-------TAAGAG----------GAGG---CGCG--------TG..............................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
.................................................................................................................................................................................................................................................................................................................ATCGCCGGAAGCACCGT-GA.....................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000
..............................................................................................................................................................................................................................................ATGAGTCAACAGGCGAA---------------------------AAACGG..........................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GCAG-------TAAGAG----------GAGG---CGCG--------................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
..............................................................................................................AATCCGATCCCACTCCGAA----------------------------------------------T------------------------GTGA..............................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................AACAGTGAGTTGGA----ATCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................ATAC---------------GTAG--AG-A-GGGGGAT..........................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
.........................................CACCGGCGTACGAAAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
........................................................................................................CAT--GAATCCGATCCCACTCCG...........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
....................................................................................................................................................................................................................................................CAACAGGCGAA---------------------------AAACGGTAA.......................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
..............................ACAACCCCAACCACCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................ACAACCCCAACCACCGGCGTACGAAAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CCAACCACCGGCGTACGAAAACAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................GGTAAAAGCAGAAAGCA--ATCG.....................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............................................................................................................................................................................................................................................................GAA---------------------------AAACGGTAAAAGCAGA................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................ACCCCAACCACCGGCGTACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................ACCCCAACCACCGGCGTACGAAAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................ATG--AAAGACCTT-----TT----TAA--GC............................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................A--GCAG-------TAAGAG----------GAGG---CGCG--------................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AG----------GAGG---CGCG--------TGTG------GAGC..................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................GTGATAC---------------GTAG--AG-A-GGGGGATGAG.......................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGAG----------GAGG---CGCG--------TGTG------G.....................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................AGCAGAAAGCA--ATCGCCGGAAG..............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................................................CAGTGAGTTGGA----ATCCC-ACAGA--GA..................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................ACCACCGGCGTACGAAAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GCACAACCCCAACCACCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................AA--GCAG-------TAAGAG----------GAGG---CG..........................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................A--GCAG-------TAAGAG----------GAGG---CGCG--------TGTG------G.....................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....................................................................................................................ATCCCACTCCGAA----------------------------------------------T------------------------GTGATA............................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
..................................................................GGA----ATCCC-ACAGA--GATA-AA.............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TT-----TT----TAA--GCAG-------TAAGAG----------GAGG---C...........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TAC---------------GTAG--AG-A-GGGGGATG.........................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
................................................................................................G----AGTCAT--GAATCCGATCCCACT..............................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG---CGCG--------TGTG------GAGCCGTTGGAGC.........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
........................................CCACCGGCGTACGAAAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CCCCAACCACCGGCGTACGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................................................................................................................................................CAT----------------------------ATG--AAAGACCTT-----TT----TAA--..............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................ACAACCCCAACCACCGGCGTACGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CAACCACCGGCGTACGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
............................GCACAACCCCAACCACCGGCGTACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CTT-----TT----TAA--GCAG-------TAAGAG----------G..................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.............................CACAACCCCAACCACCGGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................................................................................GTGATAC---------------GTAG--AG-A-GGGGG............................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................ATAAATGGGCATAG-ATGCAT----------------------------............................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................ACCCCAACCACCGGCGTACGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AATGGCACAACCCCAACCACCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................GGGGGATGAGTCAACAGG...............................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..........................................ACCGGCGTACGAAAACAGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................ACAACCCCAACCACCGGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
..........................................ACCGGCGTACGAAAACAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...........................................................................CCC-ACAGA--GATA-AACTGG----AGTCAT--G............................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...................................................................................................................GATCCCACTCCGAA----------------------------------------------T------------------------GTG...............................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................ATAC---------------GTAG--AG-A-GGGGGATGA........................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................TGGCACAACCCCAACCACCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGACCCCGTTC---CCTA-.......1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
droSim2
GAGAA----------AACAC-CACAATGGCACAACCCCAACCACCGGCGTACGAAAACAGTGAGTTGGA----ATCCC-ACAGA--GATA-AACTGC----AGTCAT--GAATCCGATCCCACTCCGAA----------------------------------------------T------------------------GTGATAC---------------GTAG--AG-A-GGGGGATGAGTCAACAGGCGAA---------------------------AAACGGTAAAAGCAGAAAGCA--ATCGCCGGAAGCGCCGT-GATTATGCCCATAAAAGGGCATAG-CTGCAT----------------------------ATG--AAAGACCTT-----TT----TAA--GCAG-------TT-GAG----------GGGG---CGGG--------GGAG------GAGCCGTTGGAGCGACCCCATTC---CCGT-T----CGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................AA----------------------------------------------T------------------------GTGATAC---------------GTAG--AG-A-GG...............................................................................................................................................................................................................................................................................1912.00200200000000000000
.........................................................................................................................................................................................................TGATAC---------------GTAG--AG-A-GGGGGATG.........................................................................................................................................................................................................................................................................2111.00100000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGACCCCATTC---CCGT-T----..1811.00100000000001000000
................................AACCCCAACCACCGGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
droSec2
-----------------------CAATGGCACAACCCCAACCACCGGCGTACGAAAACAGTGAGTTGGA----ATCCC-ACAGA--GATA-AACTGC----AGTCAT--GAATCCGATCCCACTCCGAA----------------------------------------------T------------------------GTGATAC---------------GTAG--AG-A-GGGGGATGAGTCAACAGGCGAA---------------------------AAACGGTAAAAGCAGAAAGTA--ATCGCCGGAAGCGCCGT-GATTATGCCCATAAATGGGCATAG-CTGCAT----------------------------ATG--AAAGACCTT-----TT----TAA--GCAG-------TT-GAG----------GGGG---CGGG--------GGAG------GAGCCGTTGGAGCGACCCCATTC---CCGT-T----CGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................CACAACCCCAACCACCGGCGTACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001
droYak3
-----------------------CAATGGCTCAACCCCAACCACCGGCGTACGAAAACAGTGAGTTGGA----ATCCC-ACAGA--GATA-AACCGC----AGTCAT--GAATCCGATCCGAATGCGAA----------------------------------------------T------------------------GTGACTC---------------GTAG--AG-A-AGGGGATGAGTCAACAGGCGAA---------------------------AAACGGTAAAAGCAGAAAGCA--ATCGCCGGAAGCGCCGT-GATTATGCCCATAAATGGGCATTG-CTGCAT----------------------------ATG--AAAGACCTT-----TG----TAA--GCAG-------TT-GAG----------GGGG---CGGG---------GTG------GAGCAGTTGGAGCGACCCCATTC---CCGT-T----CGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................ATGCGAA----------------------------------------------T------------------------GTGACTC---------------GTAG--AG-A-AGG..............................................................................................................................................................................................................................................................................2511.00101000000000
droEre2
-----------------------CAATGGCTCAACCCCAACCACCGGCGTACGAAAACAGTGAGTTGGA----ATCCC-ACAGA--GATA-AACTAC----AGTCAT--GAATCCGATCCGAATCCGAA----------------------------------------------T------------------------GTGATTC---------------GCTG--AG-A-AGGGGATGAGTCAACAGGCGAA---------------------------AAACGGTAAAAGCAGAAAGTA--ATCGCCGGAAGCGCCGT-GATTATGCCCATAAATGGGCATAG-CTGCAT----------------------------ATG--AAAGACCTT-----TT----AAG--GCAG-------TT-GAG----------GGGG---CGGG--------GGAG------GAGCAGTTG----------------------------ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................GGCTCAACCCCAACCACCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0021100000
.........................ATGGCTCAACCCCAACCACCGGCGTACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
..............................................................................................................................GAA----------------------------------------------T------------------------GTGATTC---------------GCTG--AG-A-AGG..............................................................................................................................................................................................................................................................................2111.0010000100

Generated: 05/21/2015 at 03:50 PM