ID:

dvi_2000

 Coordinate:

scaffold_12726:2123308-2123458 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ15199-cds]; exon [dvir_GLEANR_15524:1]; Antisense to exon [dvir_GLEANR_15684:2]; Antisense to CDS [Dvir\GJ15370-cds]; intron [Dvir\GJ15199-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGCAACAACAACAACAACAACAGCAACAACAACAACAACAGCAACAGGTGGTAAGTTTTGTTCATGCATATATTTTGTCAAGCTCTTGCCGGGGTCCAAGGGCCAGCTCCGTCTGCAGTCGAGCACTTCTGCGGCGACGACCGGCACCTGGTCGCATCGCATCACCGAAACCGAAATTCATGCCGCCGCCCATCTTCTGGCCCAGTATCTCGACACTCTGCTCGTTGCGTGCCGCGGCGCCGCTCTCCACC
**************************************************...............((((..((((((....(((((((........)))))))......((.((((((..........)))))))).(((((((...)))))))..(((......)))...))))))..))))....(((........)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060683
160_testes_total
 M047
female body
 V047
embryo
 V053
head
 SRR060662
9x160_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
.............................................................................................GTCCCAGGGCCAGCTCCGT........................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................TCCAAGGGCCGGCTCGGT........................................................................................................................................... 18 2 2 0.50 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................CCTCTGCGGAGATGACCGGC.......................................................................................................... 20 3 2 0.50 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................CTCCTCGTGGCGTGCCGCAG.............. 20 3 7 0.29 2 0 2 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CTCCTCGTGGCGTGCCGC................ 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0
...AACAACAACAACAACAACAGCA.................................................................................................................................................................................................................................. 22 0 20 0.15 3 0 3 0 0 0 0 0 0 0
.....................................................................................................................................................GTTCGCATCCCATCACCGC................................................................................... 19 3 7 0.14 1 0 0 0 0 1 0 0 0 0
..............................................................................CAAGCTCTTGCTGGGGGC........................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 1 0 0 0
....................................................................................................GGCTAGCTCCGTCTGCAGAG................................................................................................................................... 20 3 18 0.06 1 0 0 1 0 0 0 0 0 0
............................................CAGGTGGGGAGTTTTGCTC............................................................................................................................................................................................ 19 3 19 0.05 1 0 0 1 0 0 0 0 0 0
..........................................................................................GGCGTCCAAAGGCCAGCT............................................................................................................................................... 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0
......................GCAACAACAACAACAACAGCA................................................................................................................................................................................................................ 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0
.............................................................................................GGCCCACGGCCAGCTCCGT........................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0
............AACAACAACAGCAACAACAACAACAACA................................................................................................................................................................................................................... 28 0 20 0.05 1 0 1 0 0 0 0 0 0 0
.............ACAACAACAGCAACAACAACA......................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................GCTCCTTGCGGGCCGCGGG............. 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0
............AACAACAACAGCAACAACAACAA........................................................................................................................................................................................................................ 23 0 20 0.05 1 0 0 0 0 0 0 0 1 0
......AACAACAACAACAACAGCAACAACA............................................................................................................................................................................................................................ 25 0 20 0.05 1 0 0 0 0 0 0 1 0 0
.......ACAACAACAACAACAGCAACA............................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

-------------------------------------------------------------##############################################################################################################################################################################################
ACGTTGTTGTTGTTGTTGTTGTCGTTGTTGTTGTTGTTGTCGTTGTCCACCATTCAAAACAAGTACGTATATAAAACAGTTCGAGAACGGCCCCAGGTTCCCGGTCGAGGCAGACGTCAGCTCGTGAAGACGCCGCTGCTGGCCGTGGACCAGCGTAGCGTAGTGGCTTTGGCTTTAAGTACGGCGGCGGGTAGAAGACCGGGTCATAGAGCTGTGAGACGAGCAACGCACGGCGCCGCGGCGAGAGGTGG
**************************************************...............((((..((((((....(((((((........)))))))......((.((((((..........)))))))).(((((((...)))))))..(((......)))...))))))..))))....(((........)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 M047
female body
 SRR060662
9x160_0-2h_embryos_total
 M027
male body		 SRR060676
9xArg_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060675
140x9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 V116
male body
...................................................................................................................................................................................TACGGCGGCGGTCAGAAGAC.................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................CGGACGTCAGCTAGTGACGAC........................................................................................................................ 21 3 5 0.40 2 0 2 0 0 0 0 0 0 0
....................................................................................................................................................AGCAGCGTAGCCTAGTGG..................................................................................... 18 2 3 0.33 1 0 0 1 0 0 0 0 0 0
..............................................CCACCATACAGAACAAGCA.......................................................................................................................................................................................... 19 3 13 0.15 2 0 0 0 2 0 0 0 0 0
..........................................................................................................................................................................................GGGGGTAGAAGACCGGTTGA............................................. 20 3 9 0.11 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................GCGTGGCGTAGTCGCTTTAG............................................................................... 20 3 14 0.07 1 0 0 0 0 0 1 0 0 0
...TTGTTGTTGTTGTTGTTGTCGTT................................................................................................................................................................................................................................. 23 0 20 0.05 1 0 0 0 0 1 0 0 0 0
....................................................................................................CTGCTCGAGGCAGAGGTCA.................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0
.................GTTGTCGTTGTTGTTGTTGT...................................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 1 0 0
......................CGTTGTTGTTGTTGTTGTCGT................................................................................................................................................................................................................ 21 0 20 0.05 1 0 0 0 0 1 0 0 0 0
........GTTGTTGTTGTTGTCGTTGTT.............................................................................................................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1
.................................................GCCTTCAAATCAAGTACGT....................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12726:2123258-2123508 - dvi_2000 TGCAACAACAACAACAACAACAGCA---ACAACAACAACAACAGCAACAGGT---------GG-----TAAGTTTTGT-----------------------------------------------------------------------------------------------TCATG--------------------------------------------CATATATTTTGTCAAGCTCTTGCC----------------------------------------GGGGTCCAA--------------GGGCCAGCTCCGTCTGCAGTCGAGCACTTCTGC------------------------GGCGACGACCGGCACCT----------------------------------------------------------------------GGTCGCATCGCATCACCGAAACCGAAATTCATGCCGCCGCCCATCTTCTGGCCCAGTATCTCGACACTCTGCTCGTTGCGTGCCGCGGCGCCGCTCTCCACC
droMoj3 scaffold_6473:6371640-6371884 + TACAACAACAACAGCAGCAGCAGCAGCTACAACAACAACAACAACAACAGCT---------GG-----TGAGTTTAGTC-----------------------------------------------------------------------------------------------TATG--------------------------------------------TATTTATTGGGGTAAGCTCAGGTC----------------------------------------GACGCATTA--------------AGGTCAGCTCCACTTGCCGGCG---------AC------------------------GACGACGTCCAGCAGCT----------------------------------------------------------------------GGGCGCAACGCATCGCCAAAGCCGAAAGATGTCGCCCCGCCCATCTTCTGGCCGAGCACCTCGACGCTGTGCTCGTTCCGTGCCGCGGCGCCGCTCTCCACT
droGri2 scaffold_15203:1049754-1050001 - A-CAGCCACAGCCACAGCATTCGGA---GCTGCAACAACAACA------AGC---------CG-----TAAGTTTAGTT-----------------------------------------------------------------------------------------------AGTG--------------------------------------------CATTTATTTAGCTAGATAAGAGTCGGATACAAAGTAGTCCACA--------------------------------------------------GCATCAATTGCTGGTGTTCACTTCTGC------------------------GTCGACGTCCAATTGGC----------------------------------------------------------------------TGCCGCATTGCATCGCCAAAGCCAAAATTCATGGAGCCGCCCATCTTCTGGCCGAGCACCTCCACCTCCTTCTCATCGTGCGCTGCAGCGCCGGTCTCCACC
droWil2 scf2_1100000004963:2605994-2606123 + G-CAGCAGCAGCAACAACAACAACA---ACAACAGCAACAACAGCAACAGCA---------TA-----TAC----------------------------------------------------------------------------------------------CGTTTC----------------------CTTCATT--------CAT---TTCAACTG-----------TTGCT----------------------------------------TTTTTGGGGTCG---------------------GTCTCCTCCACTTG----TTAGCACGACGTC------------------------GACGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAC
dp5 XL_group3a:285437-285700 - AACAGGAACAGGAACAGGCACAGCT---TCAGCCACAGCAGGAGGAGCAACT---------GG-----TAAGTCGAGTGCTGGAA------------------------------------------------------------------GTCGAACATATATT-------------------------------------------TCACCATTT--------------------------------TACAATGGAGTCTAGCATA--------------------------------------------------TCAT-------------------C------------------------------------------------------TGCAAGTG----CTAG-----TGATTTCTGGTTTCC-CCATTTAGCCAGACAGAGGCAGGTTCATGGCTTCGCCAAAGCCCAGGTTCATAGCTCCGTCCACCCTCTGGCCCAGAACCTCAACGCTCTGCTGCTGGCGCGCACCACCGCCAGTCTCCATC
droPer2 scaffold_39:445595-445858 + A-CAAGAACAGGAACAGGCACAGCT---TCAGCCACAGCAGGAGGAGCAACT---------GG-----TAAGTCGAGTGCTGGAA------------------------------------------------------------------AACGAACATATATT-------------------------------------------TCACCATTT--------------------------------TACAATGGAGTCTAGCATA--------------------------------------------------TCAT-------------------C------------------------------------------------------TGCAAGTG----CTAG-----TGATTTCTGGTTTCCCCCATTTAGCCAGACAGAGGCAGGTTCATGGCTTCGCCAAAGCCCAGGTTCATAGCTCCGTCCACCCTCTGGCCCAGAACCTCAACGCTCTGCTGCTGGCGCGCACCACCGCCAGTCTCCATC
droAna3 scaffold_13248:855369-855466 + G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGGCCTCGCCGAAGCCCAGATTGAGGCCTCCGTTCATCTTCTGGCCCAGGACCTCGACGCTGTTCTCGTTCCTCAGACCGCCACCAGTTTCGGCC
droBip1 scf7180000393900:40123-40249 + AACAACAACAGCAACAACAGCAACA---GCAGCAACAACAACAGCAAC---TTGGAGGCCTGGAG-------TT--------------------------------------------------------------------------------------------------------------------------------------CGG---TTCAGC--------------TGGTTT---------------GGACTTGAATGGATTTTGTGGATCTCCGGGTAAGTTCCAAGAAACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACC
droKik1 scf7180000302696:1399320-1399453 - CATTCGAGCGCCGCCTGCGTC----------------CCATGGGCAACT------------GGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGGCTTCGCCAATGCCCAGATTGAGTCCTCCGGATATCCTTTGGCCCAAAATCTCGCCACTCAGGTCGTGTCGCAGTCCGCCGCCGGTTTCCGCC
droFic1 scf7180000453927:1460460-1460638 - AGCAGCAGCAGCAGCAACAGCAGCA---ACAACAGCAACAACAGCAACAACA---------GC-----AACAGCAACTGCGATTG------------------------------------------------------------------CGGCAATCTACATG-------------------------------------------CGGTCGTCTAACTG-----------TAAAG----------------------------------------CTCTTGGCAACG---------------------GT------CAG-------------------C------------------------------------------------------GGCAAACC----CAGC-----GGA---------------------ACGCACAGCAGCAGCATCA--------------------------------------------------------------------TTA-GCCACTCGGCACTCGGTTGCATC
droEle1 scf7180000491001:1404609-1404794 + --CAACAGCAACAGCAGCAACAGCA---GCAACAACAGCAGCAGCAACA------------GGCGC--TGAGCCAGCAGCAACATTGCCTATCCTCACCCTCGGCGGGATCACTGACGCCCTCTTCCTCCGGCGGAGGATCAGTTTCGGGCGGCGGC--------------------------------------------------------------------ATAT---------------------------------------------------------------------------------------CCTC---------------------------------------------------------------GGTCACACCGCAGA--A----CAACGAGG-----AGG---------------------CCGCCCA------------------------------------------------GCTGCTG----------------------------------------------------
droRho1 scf7180000779976:114386-114476 + G-CAACAACAACTACAACAACAACA---ACAACAACAACAACAGCAGCAACT---------AG-----TTAGATCTGTCTTTCGC------------------------------------------------------------------ATTGAT--------------------------------------------------------------------TTAT---------------------------------------------------------------------------------------CTTT----------------------------------------------------------------------------GCCAA-----------------------------------------------------------------------------------------------------------------------------------------------------CTATT
droBia1 scf7180000302292:3654021-3654142 - AGCAACAGCAGCAGCAACAACAACA---ACAACAACAACAGCAGCAGCAGCA---------GTCGGCC-------------------------------------------------------------------------------------------------AAG---------GCCTTGCCCACATCCCCTCCAGCGATTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTGCTCCTGCG---------------------CCTCCCG---------------------------------------------------------------------------------------------CCCCGCCTGTGGTC
droTak1 scf7180000415627:80889-80940 + --CAACAACAACAACAACAACAACA---ACAACAACAACAACAACAACAGCA---------GG-----CAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409183:849932-850005 - AGCAACAACAACAACAACACCAACA---ACAACAACAACAACAGCAACACCA---------GTTGCAC-------------------------------------------------------------------------------------------------ATGCACACT-----------------------------TTTCA---------------------------------------------------------------------------------------GCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chrX:13555382-13555576 + AACAACAGCAGCAACAACAACAACC---CCAACAGCAGCAGCAGCAACA------------GGTGCAC-------------------------------------------------------------------------------------------------AAGTTTATTGACGAGCTGACCAAATCCACATCGGTGGTTTCCA---------------------------------------------------------------------------------------GCAATGGTACCACCGAACCAGCTCTGT----------TCACCACCTCGGCGGTGATCGATCATGCCCTGAC-----------------CGATATTCTGCAGG--C----CAAAGTTGGCATTGCG---------------------CCGCCCA-----------------------------------------------------------------------------------------------------------
droSim2 x:12892078-12892272 + AGCAACAACAACAGCCCCAACAACA---GCAACAACAGCAGCAGCAACA------------GGTGCAC-------------------------------------------------------------------------------------------------AAGTTCATTGATGAGCTGACCAAATCCACTTCGGTGGTTTCCA---------------------------------------------------------------------------------------GCAATGGCACCACCGAACCAGCTCTGT----------TCACCACCTCGGCGGTGATCGATCATGCCCTGAC-----------------CGATATTCTGCAGG--C----CAAAGTCGGCATTGCG---------------------CCGCCCA-----------------------------------------------------------------------------------------------------------
droSec2 scaffold_20:195287-195445 + AGCAACAACAACAGCCCCAACAACA---GCAACAACAGCAGCAGCAACA------------GGTGCAC-------------------------------------------------------------------------------------------------AAGTTCATTGATGAACTGACCAAATCCACTTCGGTGGTTTCCA---------------------------------------------------------------------------------------GCAATGGTACCACCGAACCAGCTCTGT----------TCACCACCTCGGCGGTGATCGATCATGCCCTGAC-----------------CG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:19704990-19705043 - GGCAACAACAACAACAACAACAGCA---GCGGCAACAACAACAGCAACACGG---------AG-----CAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4690:13327935-13327998 - --CAACAACAACAGCAGCAGCAGCA---GCAACAACAGCAGCAGCAACA------------GGTGCAC-------------------------------------------------------------------------------------------------AAGTTCATTGATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGCAACAACAACAACAACAACAGCA---ACAACAACAACAACAGCAACAGGT---------GG-----TAAGTTTTGT-----------------------------------------------------------------------------------------------TCATG--------------------------------------------CATATATTTTGTCAAGCTCTTGCC----------------------------------------GGGGTCCAA--------------GGGCCAGCTCCGTCTGCAGTCGAGCACTTCTGC------------------------GGCGACGACCGGCACCT----------------------------------------------------------------------GGTCGCATCGCATCACCGAAACCGAAATTCATGCCGCCGCCCATCTTCTGGCCCAGTATCTCGACACTCTGCTCGTTGCGTGCCGCGGCGCCGCTCTCCACCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...AACAACAACAACAACAACAGCA---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.153003000000000000000000000000000000000000000000000000000000000000
......................GCA---ACAACAACAACAACAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
............AACAACAACAGCA---ACAACAACAACAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
.............ACAACAACAGCA---ACAACAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000010000000000000000000000000000000000000000000000
............AACAACAACAGCA---ACAACAACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000100000000000000000000000000000000000000000000
......AACAACAACAACAACAGCA---ACAACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000010000000000000000000000000000000000000000000000
.......ACAACAACAACAACAGCA---ACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000001000000000000000000000000000000
droMoj3
TACAACAACAACAGCAGCAGCAGCAGCTACAACAACAACAACAACAACAGCT---------GG-----TGAGTTTAGTC-----------------------------------------------------------------------------------------------TATG--------------------------------------------TATTTATTGGGGTAAGCTCAGGTC----------------------------------------GACGCATTA--------------AGGTCAGCTCCACTTGCCGGCG---------AC------------------------GACGACGTCCAGCAGCT----------------------------------------------------------------------GGGCGCAACGCATCGCCAAAGCCGAAAGATGTCGCCCCGCCCATCTTCTGGCCGAGCACCTCGACGCTGTGCTCGTTCCGTGCCGCGGCGCCGCTCTCCACTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.ACAACAACAACAGCAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102000020
.........AACAGCAGCAGCAGCAGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000100
.......ACAACAGCAGCAGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
........................AGCTACAACAACAACAACAACAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
droGri2
A-CAGCCACAGCCACAGCATTCGGA---GCTGCAACAACAACA------AGC---------CG-----TAAGTTTAGTT-----------------------------------------------------------------------------------------------AGTG--------------------------------------------CATTTATTTAGCTAGATAAGAGTCGGATACAAAGTAGTCCACA--------------------------------------------------GCATCAATTGCTGGTGTTCACTTCTGC------------------------GTCGACGTCCAATTGGC----------------------------------------------------------------------TGCCGCATTGCATCGCCAAAGCCAAAATTCATGGAGCCGCCCATCTTCTGGCCGAGCACCTCCACCTCCTTCTCATCGTGCGCTGCAGCGCCGGTCTCCACCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
G-CAGCAGCAGCAACAACAACAACA---ACAACAGCAACAACAGCAACAGCA---------TA-----TAC----------------------------------------------------------------------------------------------CGTTTC----------------------CTTCATT--------CAT---TTCAACTG-----------TTGCT----------------------------------------TTTTTGGGGTCG---------------------GTCTCCTCCACTTG----TTAGCACGACGTC------------------------GACGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................ACA---ACAACAGCAACAACAGCAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2590.11101000
.................CAACAACA---ACAACAGCAACAACAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
........CAGCAACAACAACAACA---ACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
............AACAACAACAACA---ACAACAGCAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
...AGCAGCAGCAACAACAACAACA---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
......AGCAGCAACAACAACAACA---ACAACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
...............AACAACAACA---ACAACAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100001
..............................AACAGCAACAACAGCAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000
dp5
AACAGGAACAGGAACAGGCACAGCT---TCAGCCACAGCAGGAGGAGCAACT---------GG-----TAAGTCGAGTGCTGGAA------------------------------------------------------------------GTCGAACATATATT-------------------------------------------TCACCATTT--------------------------------TACAATGGAGTCTAGCATA--------------------------------------------------TCAT-------------------C------------------------------------------------------TGCAAGTG----CTAG-----TGATTTCTGGTTTCC-CCATTTAGCCAGACAGAGGCAGGTTCATGGCTTCGCCAAAGCCCAGGTTCATAGCTCCGTCCACCCTCTGGCCCAGAACCTCAACGCTCTGCTGCTGGCGCGCACCACCGCCAGTCTCCATCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
A-CAAGAACAGGAACAGGCACAGCT---TCAGCCACAGCAGGAGGAGCAACT---------GG-----TAAGTCGAGTGCTGGAA------------------------------------------------------------------AACGAACATATATT-------------------------------------------TCACCATTT--------------------------------TACAATGGAGTCTAGCATA--------------------------------------------------TCAT-------------------C------------------------------------------------------TGCAAGTG----CTAG-----TGATTTCTGGTTTCCCCCATTTAGCCAGACAGAGGCAGGTTCATGGCTTCGCCAAAGCCCAGGTTCATAGCTCCGTCCACCCTCTGGCCCAGAACCTCAACGCTCTGCTGCTGGCGCGCACCACCGCCAGTCTCCATCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGGCCTCGCCGAAGCCCAGATTGAGGCCTCCGTTCATCTTCTGGCCCAGGACCTCGACGCTGTTCTCGTTCCTCAGACCGCCACCAGTTTCGGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AACAACAACAGCAACAACAGCAACA---GCAGCAACAACAACAGCAAC---TTGGAGGCCTGGAG-------TT--------------------------------------------------------------------------------------------------------------------------------------CGG---TTCAGC--------------TGGTTT---------------GGACTTGAATGGATTTTGTGGATCTCCGGGTAAGTTCCAAGAAACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCSizeHit CountTotal NormTotal
No Reads
droKik1
CATTCGAGCGCCGCCTGCGTC----------------CCATGGGCAACT------------GGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGGCTTCGCCAATGCCCAGATTGAGTCCTCCGGATATCCTTTGGCCCAAAATCTCGCCACTCAGGTCGTGTCGCAGTCCGCCGCCGGTTTCCGCCSizeHit CountTotal NormTotal
No Reads
droFic1
AGCAGCAGCAGCAGCAACAGCAGCA---ACAACAGCAACAACAGCAACAACA---------GC-----AACAGCAACTGCGATTG------------------------------------------------------------------CGGCAATCTACATG-------------------------------------------CGGTCGTCTAACTG-----------TAAAG----------------------------------------CTCTTGGCAACG---------------------GT------CAG-------------------C------------------------------------------------------GGCAAACC----CAGC-----GGA---------------------ACGCACAGCAGCAGCATCA--------------------------------------------------------------------TTA-GCCACTCGGCACTCGGTTGCATCSizeHit CountTotal NormTotal
No Reads
droEle1
--CAACAGCAACAGCAGCAACAGCA---GCAACAACAGCAGCAGCAACA------------GGCGC--TGAGCCAGCAGCAACATTGCCTATCCTCACCCTCGGCGGGATCACTGACGCCCTCTTCCTCCGGCGGAGGATCAGTTTCGGGCGGCGGC--------------------------------------------------------------------ATAT---------------------------------------------------------------------------------------CCTC---------------------------------------------------------------GGTCACACCGCAGA--A----CAACGAGG-----AGG---------------------CCGCCCA------------------------------------------------GCTGCTG----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
G-CAACAACAACTACAACAACAACA---ACAACAACAACAACAGCAGCAACT---------AG-----TTAGATCTGTCTTTCGC------------------------------------------------------------------ATTGAT--------------------------------------------------------------------TTAT---------------------------------------------------------------------------------------CTTT----------------------------------------------------------------------------GCCAA-----------------------------------------------------------------------------------------------------------------------------------------------------CTATTSizeHit CountTotal NormTotal
No Reads
droBia1
AGCAACAGCAGCAGCAACAACAACA---ACAACAACAACAGCAGCAGCAGCA---------GTCGGCC-------------------------------------------------------------------------------------------------AAG---------GCCTTGCCCACATCCCCTCCAGCGATTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTGCTCCTGCG---------------------CCTCCCG---------------------------------------------------------------------------------------------CCCCGCCTGTGGTCSizeHit CountTotal NormTotal
No Reads
droTak1
--CAACAACAACAACAACAACAACA---ACAACAACAACAACAACAACAGCA---------GG-----CAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AGCAACAACAACAACAACACCAACA---ACAACAACAACAACAGCAACACCA---------GTTGCAC-------------------------------------------------------------------------------------------------ATGCACACT-----------------------------TTTCA---------------------------------------------------------------------------------------GCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AACAACAGCAGCAACAACAACAACC---CCAACAGCAGCAGCAGCAACA------------GGTGCAC-------------------------------------------------------------------------------------------------AAGTTTATTGACGAGCTGACCAAATCCACATCGGTGGTTTCCA---------------------------------------------------------------------------------------GCAATGGTACCACCGAACCAGCTCTGT----------TCACCACCTCGGCGGTGATCGATCATGCCCTGAC-----------------CGATATTCTGCAGG--C----CAAAGTTGGCATTGCG---------------------CCGCCCA-----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................ATTGACGAGCTGACCAAATCC...........................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................GCAACA------------GGTGCAC-------------------------------------------------------------------------------------------------AAGTTTATTGACGA........................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................ACA------------GGTGCAC-------------------------------------------------------------------------------------------------AAGTTTATTGA...........................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TATTGACGAGCTGACCAAATCCAC.........................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................ATTGACGAGCTGACCAAATCCAC.........................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................CA------------GGTGCAC-------------------------------------------------------------------------------------------------AAGTTTATTGACGAGCTGA...................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
..........................................................................................................................................................................TATTGACGAGCTGACCAAATCCACA........................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000
..CAACAGCAGCAACAACAACAACC---CCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................TGCAC-------------------------------------------------------------------------------------------------AAGTTTATTGACGAGCTGAC..................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................CCACCTCGGCGGTGATCGAT........................................................................................................................................................................................................2012.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TATTGACGAGCTGACCAAATCCACATC......................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................ACA------------GGTGCAC-------------------------------------------------------------------------------------------------AAGTTTATTGACGAGCT.....................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............................ACAGCAGCAGCAGCAACA------------GGTGCAC-------------------------------------------------------------------------------------------------A.....................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................ACATCGGTGGTTTCCA---------------------------------------------------------------------------------------GCAATGGTAC..........................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................ACCAGCTCTGT----------TCACCACCTCGGCGGTGA.............................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTTCCA---------------------------------------------------------------------------------------GCAATGGTACCACCGAACCAGC..............................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................ATCATGCCCTGAC-----------------CGATATTCTGCAC...............................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................GCTGACCAAATCCACATCGGA...................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................GATCATGCCCTGAC-----------------CGATATTCTGCAGG--C----.......................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................CGGTGATCGATCATGCCC.................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................ATTGACGAGCTGACCAAATCCACATCG.....................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TGAC-----------------CGATATTCTGCAGG--C----CAAAGT.................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TGCAGG--C----CAAAGTTGGCATTGCG---------------------CCGC..............................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......GCAGCAACAACAACAACC---CCAACAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TTTATTGACGAGCTGACCAAATCC...........................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CAACAACAACAACC---CCAACAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GCAGCAGCAGCAACA------------GGTGCAC-------------------------------------------------------------------------------------------------A.....................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................TGACGAGCTGACCAAATCCACATCGGT...................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TGCCCTGAC-----------------CGATATTCTGCAGG--C----CA.....................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GCAACAACAACAACC---CCAACAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AGG--C----CAAAGTTGGCATTGCG---------------------CC................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................TGACCAAATCCACATCGGTGGT................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................T----------TCACCACCTCGGCGGTGATCGAT........................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................AATGGTACCACCGAACCAGCTCTGT----------...............................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................C-------------------------------------------------------------------------------------------------AAGTTTATTGACGAGCTGACCAAATC............................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................CGGCGGTGATCGATCATGC...................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
........................................GCAGCAACA------------GGTGCAC-------------------------------------------------------------------------------------------------AA....................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................AAGTTTATTGACGAGCTGACCAAATCC...........................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AACAACAACAACC---CCAACAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
..............................................................................................................................................................................GACGAGCTGACCAAATCC...........................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ACAGCAGCAACAACAACAACC---CCAACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................GGTGATCGATCATGCCCTG...............................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............CAACAACAACC---CCAACAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................ACGAGCTGACCAAATCCACATCGGTG..................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................ATCCACATCGGTGGTTTCCA---------------------------------------------------------------------------------------GCAATGG.............................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TCCA---------------------------------------------------------------------------------------GCAATGGTACCACCGAACCAGC..............................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................CATCGGTGGTTTCCA---------------------------------------------------------------------------------------GCAATGGTAC..........................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................TGCAC-------------------------------------------------------------------------------------------------AAGTTTATTGACGAGC......................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................ATCATGCCCTGAC-----------------CGATATTCTGCAG...............................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................AATCCACATCGGTGGTTTCGG---------------------------------------------------------------------------------------....................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..................................................................AC-------------------------------------------------------------------------------------------------AAGTTTATTGACGAGCTGACCA................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................T----------TCACCACCTCGGCGGTGATCGATCATG....................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......AGCAGCAACAACAACAACC---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.7560000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000
.....CAGCAGCAACAACAACAACC---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.5740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
.................................AGCAGCAGCAGCAACA------------GGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010
.................................AGCAGCAGCAGCAACA------------GGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
........CAGCAACAACAACAACC---CCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............AACAACAACC---CCAACAGCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20140.2130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000001000000000000000000000000000010000000000000000000
AACAACAGCAGCAACAACAACAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2480.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................ACAGCAGCAGCAGCAACA------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CAGCAGCAGCAGCAACA------------GGTGCAA-------------------------------------------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................24110.0910000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGCAACAACAACAGCCCCAACAACA---GCAACAACAGCAGCAGCAACA------------GGTGCAC-------------------------------------------------------------------------------------------------AAGTTCATTGATGAGCTGACCAAATCCACTTCGGTGGTTTCCA---------------------------------------------------------------------------------------GCAATGGCACCACCGAACCAGCTCTGT----------TCACCACCTCGGCGGTGATCGATCATGCCCTGAC-----------------CGATATTCTGCAGG--C----CAAAGTCGGCATTGCG---------------------CCGCCCA-----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAGG--C----CAAAGTCGGCATTG.........................................................................................................................................2312.00200200000000000000
........................A---GCAACAACAGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000001000000
droSec2
AGCAACAACAACAGCCCCAACAACA---GCAACAACAGCAGCAGCAACA------------GGTGCAC-------------------------------------------------------------------------------------------------AAGTTCATTGATGAACTGACCAAATCCACTTCGGTGGTTTCCA---------------------------------------------------------------------------------------GCAATGGTACCACCGAACCAGCTCTGT----------TCACCACCTCGGCGGTGATCGATCATGCCCTGAC-----------------CG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................ACAACAGCAGCAGCAACA------------G.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
droYak3
GGCAACAACAACAACAACAACAGCA---GCGGCAACAACAACAGCAACACGG---------AG-----CAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............ACAACAACAGCA---GCGGCAACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.20101000000000
............AACAACAACAGCA---GCGGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.14101000000000
............AACAACAACAGCA---GCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18110.09100100000000
droEre2
--CAACAACAACAGCAGCAGCAGCA---GCAACAACAGCAGCAGCAACA------------GGTGCAC-------------------------------------------------------------------------------------------------AAGTTCATTGATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................GCAGCAACA------------GGTGCAC-------------------------------------------------------------------------------------------------AAGTT.................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
..................................ACAGCAGCAGCAACA------------GGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000010
...............................ACAACAGCAGCAGCAACA------------GG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.1311000000
........CAACAGCAGCAGCAGCA---GCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000020
...AACAACAACAGCAGCAGCAGCA---GCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000010
...............AGCAGCAGCA---GCAACAACAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0511000000

Generated: 05/17/2015 at 04:45 AM