ID:

dvi_19993

 Coordinate:

scaffold_13049:14838733-14838831 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.3 -2.4 -2.4

Flybase annnotation

exon [dvir_GLEANR_11786:6]; CDS [Dvir\GJ11771-cds]; CDS [Dvir\GJ11771-cds]; exon [dvir_GLEANR_11786:5]; intron [Dvir\GJ11771-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------##################################################
GCACTTCATCTTCGGCTACCCTGAAGCGGACTCCCTCGGCTAGTACCGTTGTGGAGAGACATCAACAGCAGCAGCAGCAGCAACATCATCAACAGCAACAGCAACTTCAACAGCAGCAGCAACATCAACAGCAGCAACTTCAGCAGCAGCAAGAACAGCAACAGCGACGCACTCAACAAAAACATCAGTCGGAGCAACA
*******************************************************............((.((....)).))....................................********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M027
male body		 SRR060685
9xArg_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060666
160_males_carcasses_total
 SRR060664
9_males_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060657
140_testes_total
 V047
embryo
 SRR060682
9x140_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060679
140x9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
................TACCCTGAAGCGGACTCCCTCGG................................................................................................................................................................ 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GAGACATCAACAGCAGCAGC............................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GCAGCAGCAAGAACAGCAACAGCGACGC............................. 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................AACAGCAACTTCAACAGCAGC.................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................AGACATCAACAGCAGCAGCAGC......................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AACAGCAACAGCGACGCACTCAACA..................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............CGGCTACCCTGAAGCGGACTCC..................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................CCCTCGGCTAGTACCGTTGT................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................GACCCTGAAGTGGACTCC..................................................................................................................................................................... 18 2 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..ACTTCATCTTCGGCTACCCTGAAGC............................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............CGACCCTGAAGTGGACTCCA.................................................................................................................................................................... 20 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................TCAACAGCAGCAGCAACATC......................................................................... 20 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................CAGCAGCAGCAAGAACAGCAACA.................................... 23 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................ACAGCAGCAGCAGCAGCA..................................................................................................................... 18 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TATCAACAGCAGCAGCAGCAGCAACATT................................................................................................................ 28 2 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................AGTACAGTTATGGAAAGACA.......................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................GCAACATCAACAGCAGCAAC............................................................. 20 0 11 0.09 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................CATCAGCAACTTCAACCGC..................................................................................... 19 2 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................CAGCAACGACAACAGCAGCAACTTC.......................................................... 25 2 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AGCAGCAACATCAACAGCAGC................................................................ 21 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AGCAGCAACATCAACAGCAG................................................................. 20 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................GCAGCAACATCAACAGCAGCA............................................................... 21 0 17 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................AACAACTTCAACAGCAGCAGCA.............................................................................. 22 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................CATCAACAGCAGCAGCAGC......................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................ACAGCAGCAGCAGCAGCAACA.................................................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................AACACAAGCAACTTCAGCAGCAG.................................................. 23 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................GCAGCAACATCAACAGCAGC................................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGTGAAGTAGAAGCCGATGGGACTTCGCCTGAGGGAGCCGATCATGGCAACACCTCTCTGTAGTTGTCGTCGTCGTCGTCGTTGTAGTAGTTGTCGTTGTCGTTGAAGTTGTCGTCGTCGTTGTAGTTGTCGTCGTTGAAGTCGTCGTCGTTCTTGTCGTTGTCGCTGCGTGAGTTGTTTTTGTAGTCAGCCTCGTTGT
**********************************************************************************............((.((....)).))....................................******************************************************* 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M027
male body		 SRR060683
160_testes_total
 SRR060667
160_females_carcasses_total
 M028
head
 SRR060685
9xArg_0-2h_embryos_total
 V047
embryo
 SRR060677
Argx9_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060670
9_testes_total
 SRR060671
9x160_males_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
..............................................................................................................................TTGTCGTCGTTGAAGTCT....................................................... 18 1 6 0.33 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.........................CGTCTTAGGGAGCCGATCAC.......................................................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......TCGAAGCCGATAGGACTCC............................................................................................................................................................................. 19 3 11 0.27 3 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0
.......TCGAAGACGATGGGACTCC............................................................................................................................................................................. 19 3 12 0.25 3 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0
....AAGGAGAAGCCGCTGGGA................................................................................................................................................................................. 18 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....AGGAGAAGCCGCTGGGAC................................................................................................................................................................................ 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................TCGTCGTCGTTGTAGTAGTTA.......................................................................................................... 21 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGTAGTTGTCGTCTCTGAA........................................................... 19 2 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................TCGTGGCCGCTGCGTGAG......................... 18 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...GAAGGAGAAGCCGCTGGGAG................................................................................................................................................................................ 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................GCGCTGTAGTAGTTGCCGTTGT................................................................................................... 22 3 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................TGTTCTTGTAGTCAGACT...... 18 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................GCCTTAGTGAGCCGATCAC.......................................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......TAGAAGACGATCGGACTCC............................................................................................................................................................................. 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................TTGTAGTAGTTGACCTTGT................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:14838683-14838881 - dvi_19993 GCA-------------------------------CTT----------------------C--A-TCTTCGGCTACCCTGAAG---CGGACTCCCTCGGCTAGTACCGTTGTG--------------------------------GAGA---------------------------------------GAC---A----------------TCAACAGCAGCAGC---------AGC------------------------AGCAACATCATCAACAGCAACAGCAACTTCAACAGCAGCAGC---AACA------------------T------CAACAGCAGCAACT------------TCAGCAGC---AGCAAGAACAGCAA---CAGCGACGCAC----TCAACAAAAA------------CA------------TCAGTCGGAGCAACA
droMoj3 scaffold_6680:19620127-19620316 - GCG-------------------------------CTT----------------------C--G-TCTTCGGCTACATTAAAA---CGAACTGCCTCGACCATAACCGTTGTG--------------------------------GAGA---------------------------------------------A-------------ACAGCAACAGCAGCAACTGC---AGCAGA------TG---------------------------CAACAGCAACAGCAACAGCTG---C---------AACA------------------A------CAACAGCAGCAACA---------ACAACTACAACA---GCAGCAGCAACAACAACA---TGAACA----ACAGCGACGA------------AC------------ACAACTCAAGCAACA
droGri2 scaffold_14612:1371-1552 + CAG-------------------------------CAG----------------------C--A-GCGGCAGCAGC---------------------------------------AGCAGC---GGCAGCAG-------------------------------------CAAAA---------ACGGCAG---CA----------------------CCAACAGC---AGCAGCAGC------------------AGCAGCGTC------AACATCAGCAGCAGCAGCTGCAGCAGC---------------AGCAGCAGTT------A------AAACAGCAGC---A------------GCATCAGCA---GCAGCAAAAACAGCAGCA---GCAACA----GCAGCAGCAG------------CA------------TCAGCAGCAGCAGCA
droWil2 scf2_1100000004888:1009828-1010013 - ACA----------------------ACAAC------------------------------------AGCAGCAAC-------A-----------------------------ACAGCAGCAGCAGCAACAG-------------------------------------CAACA---------ACAGCAG---CA----------------------GCAACAAC---AACAGCAGC------------------AACAACAAC------AGCAGCAGCAGCAACAGCAACAACAGC---------------AGCAGCAACA------A------CAACAGCAGC---A------------ACAACAACA---GCAGCAGCAACAACAGCA---ACAGCA----ACAACAACAG------------CA------------GCAGCAACAGCAACA
dp5 Unknown_singleton_1849:5259-5444 + GCA----------------------GCAAC--------------------------------A-TCTGCAGCA---------------------------------------GCAACAGCAGCAACAAC-------------------------------------AGAAGC---------------------A-------------GCAGCAACAGCAGCAGC---AGCAGCAGG------------------TGCAGCAGC------AACATCAGCAACAGCAACATCAGCAGC---------------AACAGCAGCA------A------AAGCAACATC---A------------GCAGCAACA---GCAGCAGCAGCAGCAACA---ACAGCA----ACAACAGCAA------------CA------------TCAGCAACAACAACA
droPer2 scaffold_4:6701389-6701560 + CGG----------------------AGACC------------------------------------------------------------------------------------------------------------------ATGAAG---------CGACCCATCC------------------ACC---A-G------------CAGCAACAACATCAGCTGC---AGCAGCAGCAACAA------------------C------AGCAGCAACATCAACTGCAGCAG---CAGCATC---AGCA------------------G------CAGCAACAGCAGCT------------GCAGCAGA---AGCAGCAACAGCAA---CAACAGCAGCA----GCAACATAAA------------CA------------TCAACAGCAACAACA
droAna3 scaffold_13337:9798605-9798798 - GCAATCGATGAGAGCCTGCTCGAGACTTTCTCAA---CGCCG----------CTGCTCAGTCCTTTG----------------------------------------------------------------GAGATAA-AGACCGAAAAGCA---GCAG---------------------------------CGA-------------CAGCAGC---------------AGCAGC------AA---------------------------CAACATCAACACCAACAC------CAGCAGC---AACA------------------G------CAACAGCAGCAATA------------C---CAGCAGCAGCAGCAACAGCAA---CAG------CA----CTATCAGCAA------------CA------------TTATCAACAGCAGCA
droBip1 scf7180000396544:101354-101539 + GCA----------------------GCATC--------------------------------A-GCAACTACT---------------------------------------GTCGCAGCA---GCAGCTC----------------------------------TTGT---C---------------G-------------CAG---CAGCAACAACAGCAGC---AGCAGCAATACCAGCAG------------------C------CGCAACAGCATCAGCAGCATCAC---T---------------TC------------------------CAGCAACAACAGCAGCAGCAGCCGCTTTTGCA---GCAGCAACAACACGCACA---GCAGCA----GCAGCAGCAA------------CA------------TCTGCCACAGCAGCA
droKik1 scf7180000302685:196422-196619 + ACA----------------------TCACC------------------------------------AGCAGCAAC-------AA--CAACAGC---------------------ATCTAC------AGCAG-------------------------------------CAACA----------------------------------------GCA---GCAGCTGC---AGCAAC------ATCTACAGCAGCAACAGCAGCAGCATCATCTACAGCAGCAGCAGCATCTACAGCAAC------------AGCAGCA---------T------CTACAGCAGCAGCA------------GCAGCAGCA---GCATCTACAGCAGCAGCA---GCAGCA----GCAGCAGCAT------------CA------------TCTCCAGCAGCAGCA
droFic1 scf7180000454096:1059357-1059565 + GCA----------------------GTAGT----AGT--------CATGTTGG------T--G-CTGGTAGCGGTAGTCAAG---CAAATAGTGTC---------------------------------------------------------------------A------AGCATCTGCA---GAATA---A----GCAAAAGCAACAACAACT---ACAAC---AACAGCAAA------AG---------------------------CAACAGCAACTGCAACAG------CAAAAGC---AACA------------------A------CAACAACAGCAACC------------GCAACAGC---TACAGCAACAGCAA---CAGCATCACGATGTTGCAGCAGCAA------------CA------------TTAGCAGCAGCAACA
droEle1 scf7180000491214:2315505-2315699 - GCA-------------------------------TAT---CGC------------CGCAGGCCCTTG---GCAGC-------------------------------------------------------------AATTCGCCCAAGAGCAATTGCAG---------------------------------CAA-------------CAGCAGCAGCAGCAGCAGT---AGTAGC------AG---------------------------CAGCAGCAGCATC---------------------AGCA------------------G------CAGCAGCAGCAACA------------G---CAGCAGCAGCAGCAACAGCAG---CATCAGCAGCA----GCAACAGCAACGCCAGCGATCAGCCCACTCACAGCAACATTCCGCGCAGCA
droRho1 scf7180000779872:456932-457121 - TCA----------------------AGGCC----------------------------------TATACACCCAGC-------A--CAACGCCTTCTCCTCCAGCCACTGTG-------------------GCGGGAA-AACCCAAGCAACA---GCAA---------------------------------CAG-------------CAAC------------------AGCAAC------AG---------------------------CAACAGCAGCAGCAGCAGCAG---CAGCAAC---AGCA------------------G------CAGCAGCAGCA---------------ACAGCAGCA---GCAGCAACAACAGCAGCA---ACAACA----GCAGCAACAA------------CA------------GCAGCAGCAGCATCA
droBia1 scf7180000298389:213008-213188 - GCT-------------------------------CCACTTCAGTGCAGGTCGGTGCTCCGCCGCCCA-------------------------------------------------------------------------------CA---------------------------------------AACAACAA-------CAACAACAACAGCA---GCAGCAGC---AGCAGC------AA---------------------------CAGCAGCAACAACAACAGCAG------CAGC---AACA------------------G------CAGCAGCAGCAACA------------ACAGCAAC---AGCAGCAGCAGCAA---CAACAACACAC----CCAACGGTGC---------G--CA------------GCAGCAGCAGCAACA
droTak1 scf7180000415785:203976-204159 - AGA----------------------CTTTCTCGA---CCCCA----------TTGCTCAGTCCCCTG----------------------------------------------------------------GAGATAA-AGACGGAGAAA----------------------------------------------------------CAGCAGCAGCAGCAGCAGCAACAGCAGC------GA---------------------------CAACAGCAGCAGCAACATCAG------CAGCAACAGC---A---------------A------CACCAGCAGCA---------------ACATCAGCA---GCAGCAATACCAGCAGCA---ACACTA----TCAGCAACAT------------TA------------TCAGCAGCAGCAGCA
droEug1 scf7180000409246:298182-298373 + TCA----------------------TCATC--------------------------------A-TCATCATCA---------------------------------------CCATCAACA---TCATCAC-------------------------------------AGTCAGCATCTACAACTCCAA---CAA-------CAACAACAAC------------------AACAGC------------------AGCAACAAC------AACAACGGCAACACCAACAACAG---CCGC------------TACACCA---------A------CAACAACAGCAATT------------GCAACACC---AGCAGCAACAACAA---CAACAACACCA----CCAACAACAA------------CA------------ACACTACCAACAACA
dm3 chr3L:7824164-7824345 - GCC-------------------------------TTG----------------------C--A-GCAGCAGCAAC-------AAACCGCCGCC------------------------------------------------------------------------CTGC------------------ACC---A-TCAGCAACAG---CAGCA---GCATCAACAGCAGCAGCAAC------------------------------------ACCAACAGCACC---------------------TACAGCAACACCA---------TCAAGCGCACCATCAGCATGTCCT---------GCAGCAGC---AGCAGCAGCAGCAA---CAGCAGCACTC----CCAGCATCAG------------CA------------TCAGCAGCAACATCA
droSim2 x:10052417-10052623 + TGT-------------------------------CGC----------------------C--A-TCTCCGCCGCTCAACGAT---CAGATCAGCT-TGCTATTCCCC-------------------------------------AAGTGC---------CGACC---------------------CAAACAGCAG-------CAGCAGCAGCAGCA---GCAGCAGC---AGCAGC------AG---------------------------CAGCAGCAGCAACAGCAG------CAGCAGC---AACA------------------G------CAACAGCAGCAACT------------TCAACCAG---CACAACAGCAGCAG---CAGCAGCATGTCCTTCCCACA--GA------------CG---------TGAATTCCAGCTGCAACA
droSec2 scaffold_0:130592-130770 - GCC-------------------------------TTG----------------------C--A-GCAGCAGCAAC-------AAACCGCCGCC------------------------------------------------------------------------CTGC------------------ACC---A-T------------CAGCAACAGCAGCAGCAGC---AGCATC------AA---------------------------CAGCAGCAACACCAACAGCAC---C---------TACAGCAACACCA---------TCAAGCGCACCATCAGCATGT------------CCTGCAGC---AGCAGCAGCAGCAA---CAGCAGCACTC----CC---AGCAT------------CA------------GCATCAGCAGCAACA
droYak3 3L:4195061-4195253 + TCG-------------------AGACATTCTCGA---CCCCA----------TTGCTCAGTCCCCTG----------------------------------------------------------------GAGATAA-AGACCGAGAAGCA---GCAG---------------------------------CGA----------CAACAGCAGCA---CCACCACC---AACAC---------------------------C------AGCACCAGCAGCAGCAACAACAG---CAGCAAC---AGCA------------------G------CAACACCAGC---A------------GCAACATCA---GCAGCAATACCAGCAGCA---ACACTA----TCAGCAACAT------------TA------------TCAGCAGCAGCAGCA
droEre2 scaffold_4929:4974122-4974309 + GCA-------------------------------CAG----------------------C--A-GCAACAGCAGC---------------------------------------AGCAAC---AACATCGC-------------------------------------TAATAACAGCTATA----------------------------------AGAGAAGC---AGCAGCAGC------------------GGCAACAAC------AGCACTAACAGAAGCAGCAGCAGCAAC---------------AACAGCAGTTTAAACAT------CAGCAACAAGAATG------------ACAGCAAC---AGCACTAACAGCAA---CAACAACAGCC----GC---AGCGA------------CA------------ACATCGACGGCGACG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GCA-------------------------------CTT----------------------C--A-TCTTCGGCTACCCTGAAG---CGGACTCCCTCGGCTAGTACCGTTGTG--------------------------------GAGA---------------------------------------GAC---A----------------TCAACAGCAGCAGC---------AGC------------------------AGCAACATCATCAACAGCAACAGCAACTTCAACAGCAGCAGC---AACA------------------T------CAACAGCAGCAACT------------TCAGCAGC---AGCAAGAACAGCAA---CAGCGACGCAC----TCAACAAAAA------------CA------------TCAGTCGGAGCAACASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................TACCCTGAAG---CGGACTCCCTCGG....................................................................................................................................................................................................................................................................................................................................................................2312.002200000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................GA---------------------------------------GAC---A----------------TCAACAGCAGCAGC---------.............................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GCAGC---AGCAAGAACAGCAA---CAGCGACGC.........................................................2811.001000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................AACAGCAACTTCAACAGCAGC...........................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................A---------------------------------------GAC---A----------------TCAACAGCAGCAGC---------AGC------------------------..................................................................................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AACAGCAA---CAGCGACGCAC----TCAACA.............................................2511.001001000000000000000000000000000000000000000000000000000000000000
....................................................................CGGCTACCCTGAAG---CGGACTCC.........................................................................................................................................................................................................................................................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
...........................................................................................CCCTCGGCTAGTACCGTTGT.......................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..A-------------------------------CTT----------------------C--A-TCTTCGGCTACCCTGAAG---C................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................................................................................................................................TCAACAGCAGCAGC---AACA------------------T------C.......................................................................................................................2030.331000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................CAGCAGC---AGCAAGAACAGCAA---CA................................................................2350.201001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................ACAGCAGCAGC---------AGC------------------------AGCA..............................................................................................................................................................................................18200.153003000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................GC---AACA------------------T------CAACAGCAGCAAC...........................................................................................................20110.091000000000000000010000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................AGCAGC---AACA------------------T------CAACAGCAGC..............................................................................................................21160.061001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................AGCAGC---AACA------------------T------CAACAGCAG...............................................................................................................20160.061001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................GCAGC---AACA------------------T------CAACAGCAGCA.............................................................................................................21170.061000000000000000000000000000000001000000000000000000000000000000
.............................................................................................................................................................................................C---A----------------TCAACAGCAGCAGC---------AGC------------------------..................................................................................................................................................................................................19200.051000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................ACAGCAGCAGC---------AGC------------------------AGCAACA...........................................................................................................................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................GCAGC---AACA------------------T------CAACAGCAGC..............................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
GCG-------------------------------CTT----------------------C--G-TCTTCGGCTACATTAAAA---CGAACTGCCTCGACCATAACCGTTGTG--------------------------------GAGA---------------------------------------------A-------------ACAGCAACAGCAGCAACTGC---AGCAGA------TG---------------------------CAACAGCAACAGCAACAGCTG---C---------AACA------------------A------CAACAGCAGCAACA---------ACAACTACAACA---GCAGCAGCAACAACAACA---TGAACA----ACAGCGACGA------------AC------------ACAACTCAAGCAACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................C--G-TCTTCGGCTACATTAAAA---CGAACTGC.........................................................................................................................................................................................................................................................................................................................................................................2811.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................TGAACA----ACAGCGACGA------------AC------------ACAAC..........2311.001000001
..................................................................TTCGGCTACATTAAAA---CGAACTG..........................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.....................................................................................................................................................................................................................................................................................................................................................................ACAACTACAACA---GCAGCAGCAA........................................................................2270.433300000
..................................................................................................................................................................................................................................................................................CAGCAACAGCAACAGCTG---C---------AA...................................................................................................................................................2130.331000001
.......................................................................................................................................................................................................................................................................................................................................................................AACTACAACA---GCAGCAGCAACA......................................................................2270.292200000
...........................................................................................................................................................................................................................................................................................CAACAGCTG---C---------AACA------------------A------CAACAGC.................................................................................................................2240.251100000
......................................................................................................................................................................................................................................................................................................................................................................CAACTACAACA---GCAGCAGCAAC.......................................................................2280.131100000
..................................................................................................................................................................................................................GCAACAGCAGCAACTGC---AGC.............................................................................................................................................................................................................................20110.091000010
.......................................................................................................................................................................................................................................................................................................................................................CAACA---------ACAACTACAACA---GCAGCA............................................................................23120.081000001
.....................................................................................................................................................................................................................................................................................................................................................................ACAACTACAACA---GCAGCAGCA.........................................................................21150.071100000
..................................................................................................................................................................................................................................................TG---------------------------CAACAGCAACAGCAACAGC....................................................................................................................................................................21200.051100000
droGri2
CAG-------------------------------CAG----------------------C--A-GCGGCAGCAGC---------------------------------------AGCAGC---GGCAGCAG-------------------------------------CAAAA---------ACGGCAG---CA----------------------CCAACAGC---AGCAGCAGC------------------AGCAGCGTC------AACATCAGCAGCAGCAGCTGCAGCAGC---------------AGCAGCAGTT------A------AAACAGCAGC---A------------GCATCAGCA---GCAGCAAAAACAGCAGCA---GCAACA----GCAGCAGCAG------------CA------------TCAGCAGCAGCAGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................C--A-GCGGCAGCAGC---------------------------------------AGCAGC---GGC........................................................................................................................................................................................................................................................................................................................................22200.05101
droWil2
ACA----------------------ACAAC------------------------------------AGCAGCAAC-------A-----------------------------ACAGCAGCAGCAGCAACAG-------------------------------------CAACA---------ACAGCAG---CA----------------------GCAACAAC---AACAGCAGC------------------AACAACAAC------AGCAGCAGCAGCAACAGCAACAACAGC---------------AGCAGCAACA------A------CAACAGCAGC---A------------ACAACAACA---GCAGCAGCAACAACAGCA---ACAGCA----ACAACAACAG------------CA------------GCAGCAACAGCAACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................GCAGC---A------------ACAACAACA---GCA...............................................................................18200.15300030
.......................................................................................................................................................................................................................................GCAGC------------------AACAACAAC------AGCA.....................................................................................................................................................................................18200.15300030
....................................................................CAGCAAC-------A-----------------------------ACAGCAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................22200.10200020
..................................................................................................................................................................................................................................................................................................................................................................................................AGCA---ACAGCA----ACAACAACAG------------CA------------GCA............25200.10202000
...........................................................................................................................................................................................................................................................................................................................................................................ACAACA---GCAGCAGCAACAAC....................................................................20200.10200002
..........................................................................................................................CAGCAACAG-------------------------------------CAACA---------ACAGCAG---CA----------------------GCAA..........................................................................................................................................................................................................................................27200.05101000
....................................................................................................................................................................................................................................ACAGCAGC------------------AACAACAAC------AGCA.....................................................................................................................................................................................21200.05100001
...................................................................................................................................................................................................................................................................................................................................................................................................GCA---ACAGCA----ACAACAACAG------------C............................20200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAG------------CA------------GCAGCAACAG.....22200.05100010
.........................................................................................................................GCAGCAACAG-------------------------------------CAACA---------ACAGCAG---CA----------------------GC............................................................................................................................................................................................................................................26200.05101000
............................AC------------------------------------AGCAGCAAC-------A-----------------------------ACAGCAGCA.............................................................................................................................................................................................................................................................................................................................................21200.05100010
...................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAG------------CA------------GCAGCAA........19200.05100010
....................................................................................................................................................................................................................................................................................GCAGCAACAGCAACAACAGC---------------AGCAGC.........................................................................................................................................26200.05101000
..................................................................................................................................................................................................................................................................................CAGCAGCAACAGCAACAACAGC---------------AG.............................................................................................................................................24200.05100010
.........................................................................................................................................................................................................................................................................................AACAGCAACAACAGC---------------AGCAGCAA.......................................................................................................................................23200.05101000
..A----------------------ACAAC------------------------------------AGCAGCAAC-------A-----------------------------ACAGC.................................................................................................................................................................................................................................................................................................................................................21200.05100010
................................................................................................................................................................................................................................................................................................................................................ACAGCAGC---A------------ACAACAACA---GCA...............................................................................21200.05100001
..................................................................................................................................................................................................................................................................................................AACAGC---------------AGCAGCAACA------A------CA......................................................................................................................19200.05100001
.................................................................................................................CAGCAGCAGCAGCAACAG-------------------------------------CA............................................................................................................................................................................................................................................................................................20200.05100010
.....................................................................................................................................................................................................................................................................................CAGCAACAGCAACAACAGC---------------AGCAGCAA.......................................................................................................................................27200.05101000
.......................................................................................................................CAGCAGCAACAG-------------------------------------CAACA---------ACAGCAG---......................................................................................................................................................................................................................................................................24200.05100010
..................................................................................................................................................................................................................................................................................................................................................AGCAGC---A------------ACAACAACA---GCAG..............................................................................20200.05100010
..............................................................................................................................AACAG-------------------------------------CAACA---------ACAGCAG---CA----------------------GCAACA........................................................................................................................................................................................................................................25200.05100010
..........................................................................C-------A-----------------------------ACAGCAGCAGCAGCAACAG-------------------------------------CAA...........................................................................................................................................................................................................................................................................................24200.05101000
...............................................................................................................................................................................................................................C---AACAGCAGC------------------AACAACAAC------AGCAGC...................................................................................................................................................................................25200.05100010
.......................................................................................................................................................................................CAGCAG---CA----------------------GCAACAAC---AACAGCAGC------------------A.......................................................................................................................................................................................................26200.05100001
..............................................................................................................................................................................................................................................................................................................................................................................................................A----ACAACAACAG------------CA------------GCAGCAA........20200.05100001
........................................................................................................................................................................................................................................................................................CAACAGCAACAACAGC---------------AGCAGCAACA------A------........................................................................................................................27200.05100010
.......................................................................................................................................................................................................................................................................................................................................................C---A------------ACAACAACA---GCAGCAGC..........................................................................19200.05101000
.........................ACAAC------------------------------------AGCAGCAAC-------A-----------------------------ACAGCAGC..............................................................................................................................................................................................................................................................................................................................................23200.05100010
......................................................................GCAAC-------A-----------------------------ACAGCAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................20200.05100010
....................................................................................................................................................................................................................................................................................................CAGC---------------AGCAGCAACA------A------CAACAGCAGC---A------------..............................................................................................26200.05100001
.....................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAG------------CA------------GCAGCAACAGCA...22200.05101000
......................................................................................................................................................................................................................................AGCAGC------------------AACAACAAC------AGCAG....................................................................................................................................................................................20200.05100010
.............................................................................................................................CAACAG-------------------------------------CAACA---------ACAGCAG---CA----------------------GCAACAA.......................................................................................................................................................................................................................................27200.05100010
.....................................................................................................................................................................................................................................................................................................................................................................................................A---ACAGCA----ACAACAACAG------------CA------------GCA............22200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAG------------CA------------GCAGCAACA......21200.05100010
.........................................................................................................................................................................................................................................................................................AACAGCAACAACAGC---------------AGCAGCAACA------...............................................................................................................................25200.05100010
......................................................................................................................................................................................................................................................................C------AGCAGCAGCAGCAACAGCA......................................................................................................................................................................20200.05100010
..............................................................................................................................AACAG-------------------------------------CAACA---------ACAGCAG---CA----------------------GCAA..........................................................................................................................................................................................................................................23200.05101000
..........................................................................................................................................................................................................................................GC------------------AACAACAAC------AGCAGCAGCAGCA............................................................................................................................................................................24200.05100010
..........................................................................................................................................................................................................................................................................................................................................................................AACAACA---GCAGCAGCAACAA.....................................................................20200.05100010
............................AC------------------------------------AGCAGCAAC-------A-----------------------------ACAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................................24200.05100010
............................................................................................................................................................................A---------ACAGCAG---CA----------------------GCAACAAC---A..................................................................................................................................................................................................................................19200.05100001
.....................................................................................................................................................................................................................................................................................................................................................................................................A---ACAGCA----ACAACAACAG------------CA------------GCAGCA.........25200.05100010
.............................................................................................................................................................................................................................................................................................................................................................................AACA---GCAGCAGCAACAACAGCA---ACA..........................................................25200.05100100
.........................................................................AC-------A-----------------------------ACAGCAGCAGCAGCAACAG-------------------------------------C.............................................................................................................................................................................................................................................................................................23200.05100010
dp5
GCA----------------------GCAAC--------------------------------A-TCTGCAGCA---------------------------------------GCAACAGCAGCAACAAC-------------------------------------AGAAGC---------------------A-------------GCAGCAACAGCAGCAGC---AGCAGCAGG------------------TGCAGCAGC------AACATCAGCAACAGCAACATCAGCAGC---------------AACAGCAGCA------A------AAGCAACATC---A------------GCAGCAACA---GCAGCAGCAGCAGCAACA---ACAGCA----ACAACAGCAA------------CA------------TCAGCAACAACAACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA---GCAGCAGCAGC.......................................................................20200.501001000000000
..........................................................................................................................CAACAAC-------------------------------------AGAAGC---------------------A-------------GCAGC..................................................................................................................................................................................................................................................1970.1410010000000
......................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACA---ACAGCA----...................................................22200.1020200000000
.......................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACA---ACAGCA----...................................................21200.1020100100000
.................................................................................................................................................................................................................................................................................................................................................CAACATC---A------------GCAGCAACA---GCAGC.............................................................................22110.0910010000000
...........................................................................................................................................................................................................................................................................................CAACATCAGCAGC---------------AACAGCAGC......................................................................................................................................22110.0910010000000
.....................................................................................................................................................................................................................................................................................................................................................ATC---A------------GCAGCAACA---GCAGCAGCAGC.......................................................................24140.0710000100000
...............................................................................................................................................................................................................GCAGCAACAGCAGCAGC---AGCAGCAGG------------------........................................................................................................................................................................................................26140.0710100000000
....................................................................................................................................................................................................................................................................................................................................................CATC---A------------GCAGCAACA---GCAGC.............................................................................19200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................C---A------------GCAGCAACA---GCAGCAGCA.........................................................................20200.0510000100000
.......................................................................................................................................................................................................................................................................................................................................................C---A------------GCAGCAACA---GCAGCAGCAGCA......................................................................23200.0510001000000
................................................................................................................................................................................................................................................................................................................................................................................A---GCAGCAGCAGCAGCAACA---ACA..........................................................22200.0510000100000
....................................................................................................................................................................................................................AACAGCAGCAGC---AGCAGCA............................................................................................................................................................................................................................19200.0510000100000
...........................................................................................................................................................................................................................................................................................................................................................A------------GCAGCAACA---GCAGCAGCAGCAG.....................................................................23200.0510100000000
.....................................................................AGCA---------------------------------------GCAACAGCAGCAACA.......................................................................................................................................................................................................................................................................................................................................19200.0510100000000
................................................................................................................................................................................................................................................................................................................................................................................................GCAACA---ACAGCA----ACAACAGCAA------------C............................23200.0510100000000
...............................................................................................................................................................................................................GCAGCAACAGCAGCAGC---AGCA...............................................................................................................................................................................................................................21200.0510000100000
...................................................................GCAGCA---------------------------------------GCAACAGCAGCAAC........................................................................................................................................................................................................................................................................................................................................20200.0510001000000
.........................................................................................................................................................................................................................CAGCAGC---AGCAGCAGG------------------TG......................................................................................................................................................................................................18200.0510100000000
...............................................................................................................................................................................................................................................................................................................................................................................CA---GCAGCAGCAGCAGCAACA---.............................................................20200.0510000010000
..........................................................................................................................................................................................................................................................................................................................................................................AGCAACA---GCAGCAGCAGCAG.....................................................................20200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACA---ACAGCA----A..................................................23200.0510000100000
..........................................................................................................................................................................GC---------------------A-------------GCAGCAACAGCAGCAGC---A..................................................................................................................................................................................................................................21200.0510000010000
..............................................................................................................................................................................................................................................................................................CATCAGCAGC---------------AACAGCAGC......................................................................................................................................19200.0510100000000
................................................................................................................................................................................................................................................................................................................................................................................A---GCAGCAGCAGCAGCAACA---.............................................................19200.0510000010000
.............................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA---ACAGCA----ACAACAG............................................22200.0510100000000
................................................................................................................................................................................................................CAGCAACAGCAGCAGC---AG.................................................................................................................................................................................................................................18200.0510100000000
droPer2
CGG----------------------AGACC------------------------------------------------------------------------------------------------------------------ATGAAG---------CGACCCATCC------------------ACC---A-G------------CAGCAACAACATCAGCTGC---AGCAGCAGCAACAA------------------C------AGCAGCAACATCAACTGCAGCAG---CAGCATC---AGCA------------------G------CAGCAACAGCAGCT------------GCAGCAGA---AGCAGCAACAGCAA---CAACAGCAGCA----GCAACATAAA------------CA------------TCAACAGCAACAACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAA---CAACAGCAGCA----GC.................................................23200.051010000
.................................................................................................................................................................................................................................GC---AGCAGCAGCAACAA------------------C------AGCAGCA..................................................................................................................................................................................24200.051001000
.............................................................................................................................................................................................................................................................................................................................................................................................GCAA---CAACAGCAGCA----GCAACA.............................................21200.051001000
droAna3
GCAATCGATGAGAGCCTGCTCGAGACTTTCTCAA---CGCCG----------CTGCTCAGTCCTTTG----------------------------------------------------------------GAGATAA-AGACCGAAAAGCA---GCAG---------------------------------CGA-------------CAGCAGC---------------AGCAGC------AA---------------------------CAACATCAACACCAACAC------CAGCAGC---AACA------------------G------CAACAGCAGCAATA------------C---CAGCAGCAGCAGCAACAGCAA---CAG------CA----CTATCAGCAA------------CA------------TTATCAACAGCAGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................GCAG---------------------------------CGA-------------CAGCAGC---------------AGCAGC------AA---------------------------C......................................................................................................................................................................................2311.001010000
......................................................................................................................................................................................................................................AGCAGC------AA---------------------------CAACATCAACACC..........................................................................................................................................................................2111.001010000
..............................................................................................................................................................................................................................................................................................CAC------CAGCAGC---AACA------------------G------CAACAGCAGC..............................................................................................................2540.251100000
...........................................................................................................................................................GCAG---------------------------------CGA-------------CAGCAGC---------------AGCAGC------....................................................................................................................................................................................................................2040.251010000
.................................................................................................................................................................................................GA-------------CAGCAGC---------------AGCAGC------AA---------------------------CA.....................................................................................................................................................................................19140.071000001
..................................................................................................................................................................................................A-------------CAGCAGC---------------AGCAGC------AA---------------------------CAAC...................................................................................................................................................................................20200.051001000
.............................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAGCAA---CAG------C........................................................24200.051000001
droBip1
GCA----------------------GCATC--------------------------------A-GCAACTACT---------------------------------------GTCGCAGCA---GCAGCTC----------------------------------TTGT---C---------------G-------------CAG---CAGCAACAACAGCAGC---AGCAGCAATACCAGCAG------------------C------CGCAACAGCATCAGCAGCATCAC---T---------------TC------------------------CAGCAACAACAGCAGCAGCAGCCGCTTTTGCA---GCAGCAACAACACGCACA---GCAGCA----GCAGCAGCAA------------CA------------TCTGCCACAGCAGCASizeHit CountTotal NormTotal
No Reads
droKik1
ACA----------------------TCACC------------------------------------AGCAGCAAC-------AA--CAACAGC---------------------ATCTAC------AGCAG-------------------------------------CAACA----------------------------------------GCA---GCAGCTGC---AGCAAC------ATCTACAGCAGCAACAGCAGCAGCATCATCTACAGCAGCAGCAGCATCTACAGCAAC------------AGCAGCA---------T------CTACAGCAGCAGCA------------GCAGCAGCA---GCATCTACAGCAGCAGCA---GCAGCA----GCAGCAGCAT------------CA------------TCTCCAGCAGCAGCASizeHit CountTotal NormTotal
No Reads
droFic1
GCA----------------------GTAGT----AGT--------CATGTTGG------T--G-CTGGTAGCGGTAGTCAAG---CAAATAGTGTC---------------------------------------------------------------------A------AGCATCTGCA---GAATA---A----GCAAAAGCAACAACAACT---ACAAC---AACAGCAAA------AG---------------------------CAACAGCAACTGCAACAG------CAAAAGC---AACA------------------A------CAACAACAGCAACC------------GCAACAGC---TACAGCAACAGCAA---CAGCATCACGATGTTGCAGCAGCAA------------CA------------TTAGCAGCAGCAACASizeHit CountTotal NormTotal
No Reads
droEle1
GCA-------------------------------TAT---CGC------------CGCAGGCCCTTG---GCAGC-------------------------------------------------------------AATTCGCCCAAGAGCAATTGCAG---------------------------------CAA-------------CAGCAGCAGCAGCAGCAGT---AGTAGC------AG---------------------------CAGCAGCAGCATC---------------------AGCA------------------G------CAGCAGCAGCAACA------------G---CAGCAGCAGCAGCAACAGCAG---CATCAGCAGCA----GCAACAGCAACGCCAGCGATCAGCCCACTCACAGCAACATTCCGCGCAGCASizeHit CountTotal NormTotal
No Reads
droRho1
TCA----------------------AGGCC----------------------------------TATACACCCAGC-------A--CAACGCCTTCTCCTCCAGCCACTGTG-------------------GCGGGAA-AACCCAAGCAACA---GCAA---------------------------------CAG-------------CAAC------------------AGCAAC------AG---------------------------CAACAGCAGCAGCAGCAGCAG---CAGCAAC---AGCA------------------G------CAGCAGCAGCA---------------ACAGCAGCA---GCAGCAACAACAGCAGCA---ACAACA----GCAGCAACAA------------CA------------GCAGCAGCAGCATCASizeHit CountTotal NormTotal
No Reads
droBia1
GCT-------------------------------CCACTTCAGTGCAGGTCGGTGCTCCGCCGCCCA-------------------------------------------------------------------------------CA---------------------------------------AACAACAA-------CAACAACAACAGCA---GCAGCAGC---AGCAGC------AA---------------------------CAGCAGCAACAACAACAGCAG------CAGC---AACA------------------G------CAGCAGCAGCAACA------------ACAGCAAC---AGCAGCAGCAGCAA---CAACAACACAC----CCAACGGTGC---------G--CA------------GCAGCAGCAGCAACASizeHit CountTotal NormTotal
No Reads
droTak1
AGA----------------------CTTTCTCGA---CCCCA----------TTGCTCAGTCCCCTG----------------------------------------------------------------GAGATAA-AGACGGAGAAA----------------------------------------------------------CAGCAGCAGCAGCAGCAGCAACAGCAGC------GA---------------------------CAACAGCAGCAGCAACATCAG------CAGCAACAGC---A---------------A------CACCAGCAGCA---------------ACATCAGCA---GCAGCAATACCAGCAGCA---ACACTA----TCAGCAACAT------------TA------------TCAGCAGCAGCAGCASizeHit CountTotal NormTotal
No Reads
droEug1
TCA----------------------TCATC--------------------------------A-TCATCATCA---------------------------------------CCATCAACA---TCATCAC-------------------------------------AGTCAGCATCTACAACTCCAA---CAA-------CAACAACAAC------------------AACAGC------------------AGCAACAAC------AACAACGGCAACACCAACAACAG---CCGC------------TACACCA---------A------CAACAACAGCAATT------------GCAACACC---AGCAGCAACAACAA---CAACAACACCA----CCAACAACAA------------CA------------ACACTACCAACAACASizeHit CountTotal NormTotal
No Reads
dm3
GCC-------------------------------TTG----------------------C--A-GCAGCAGCAAC-------AAACCGCCGCC------------------------------------------------------------------------CTGC------------------ACC---A-TCAGCAACAG---CAGCA---GCATCAACAGCAGCAGCAAC------------------------------------ACCAACAGCACC---------------------TACAGCAACACCA---------TCAAGCGCACCATCAGCATGTCCT---------GCAGCAGC---AGCAGCAGCAGCAA---CAGCAGCACTC----CCAGCATCAG------------CA------------TCAGCAGCAACATCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................C---------------------TACAGCAACACCA---------TCAAGCGCAC.....................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................ACCA---------TCAAGCGCACCATCAG...............................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
............................................................................................................................................................................................CC---A-TCAGCAACAG---CAGCA---GCA...........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................CAGCAAC------------------------------------ACCAACAGCACC---------------------TA...................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...................................................................................AACCGCCGCC------------------------------------------------------------------------CTGC------------------ACC---A-...................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGCAAC-------AAACCGCCGCC------------------------------------------------------------------------CT...............................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................C---------------------TACAGCAACACCA---------TCAAGCGCACCA...................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TCAG------------CA------------TCAGCAGCAACA...1870.4330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................GCAGCAGCAAC------------------------------------ACCAACAGC.............................................................................................................................................................................20110.3640000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
.........................................................................................................................................................................................................ACAG---CAGCA---GCATCAACAGCAGCAGCA............................................................................................................................................................................................................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAG------------CA------------TCAGCAGCAACA...2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAG------------CA------------TCAGCAGCAAC....2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................A---GCATCAACAGCAGCAGCAA...........................................................................................................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AG------------CA------------TCAGCAGCAACATC.1880.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................AGCAACAG---CAGCA---GCATCAACAGCAGT................................................................................................................................................................................................................................2740.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................................................................................................................................................................................AGCA---GCATCAACAGCAGCAGC.............................................................................................................................................................................................................................2190.2220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................AACAG---CAGCA---GCATCAACAGC...................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.......................................................................................................................................................................................................CAACAG---CAGCA---GCATCAAC......................................................................................................................................................................................................................................19110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................G---CAGCA---GCATCAACAGCAGCAGC.............................................................................................................................................................................................................................2360.1710000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................A---GCATCAACAGCAGCAGCA............................................................................................................................................................................................................................19130.1520000000000000000000000000000000000000000000000000000000001000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................CAACAG---CAGCA---GCATCAACA.....................................................................................................................................................................................................................................2090.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................GCA---GCATCAACAGCAGCAG..............................................................................................................................................................................................................................19110.0910000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................GCA---GCATCAACAGCAGCA...............................................................................................................................................................................................................................18140.0710000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................GCATCAACAGCAGCAGCA............................................................................................................................................................................................................................18150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................AACAG---CAGCA---GCATCAAC......................................................................................................................................................................................................................................18150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAG------------CA------------TCAGCAGCA......19160.0610000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................A-TCAGCAACAG---CAGCA---GCA...........................................................................................................................................................................................................................................19170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................AGC---AGCAGCAGCAGCAA---CAG...............................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC---AGCAGCAGCAGC.......................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................CAGCAACAG---CAGCA---GCAT..........................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATCAG------------CA------------TCAGCAGCAA.....17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................C---AGCAGCAGCAGCAA---CAGC..............................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CAGC---AGCAGCAGCAGCAA---CAG...............................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................T---------GCAGCAGC---AGCAGCAGCAGCAA---C.................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................C---AGCAGCAGCAGCAA---CAGCA.............................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................AGCAACAG---CAGCA---GCATCA........................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................CAGCAGCAAC------------------------------------ACCAACAGC.............................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGT-------------------------------CGC----------------------C--A-TCTCCGCCGCTCAACGAT---CAGATCAGCT-TGCTATTCCCC-------------------------------------AAGTGC---------CGACC---------------------CAAACAGCAG-------CAGCAGCAGCAGCA---GCAGCAGC---AGCAGC------AG---------------------------CAGCAGCAGCAACAGCAG------CAGCAGC---AACA------------------G------CAACAGCAGCAACT------------TCAACCAG---CACAACAGCAGCAG---CAGCAGCATGTCCTTCCCACA--GA------------CG---------TGAATTCCAGCTGCAACASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................GCAGCAG---CAGCAGCATGTCC.....................................................2021.00200000200000000000
...............................................................................................................................................................................................GCAG-------CAGCAGCAGCAGCA---G..........................................................................................................................................................................................................................................19200.05100010000000000000
...................................................................................................................................................................................................................................................................................AGCAGCAACAGCAG------CA.............................................................................................................................................................16200.05100000010000000000
................................................................................................................................................................................................................................................................................AGCAGCAGCAACAGCAG------CAGCAGC---.....................................................................................................................................................24200.05110000000000000000
droSec2
GCC-------------------------------TTG----------------------C--A-GCAGCAGCAAC-------AAACCGCCGCC------------------------------------------------------------------------CTGC------------------ACC---A-T------------CAGCAACAGCAGCAGCAGC---AGCATC------AA---------------------------CAGCAGCAACACCAACAGCAC---C---------TACAGCAACACCA---------TCAAGCGCACCATCAGCATGT------------CCTGCAGC---AGCAGCAGCAGCAA---CAGCAGCACTC----CC---AGCAT------------CA------------GCATCAGCAGCAACASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................C---A-T------------CAGCAACAGCAGCAGCAGC---AGCAT...........................................................................................................................................................................................................................2720.5010100
............................................................................................................................................................................................CC---A-T------------CAGCAACAGCAGCAGCA.....................................................................................................................................................................................................................................2130.3310001
............................................................................................................................................................................................................................CAGCAGC---AGCATC------AA---------------------------CAGCAGC................................................................................................................................................................................2280.1310001
................................................................................................................................................................................................................................................................................AGCAGCAACACCAACAGCA...................................................................................................................................................................19180.0610001
droYak3
TCG-------------------AGACATTCTCGA---CCCCA----------TTGCTCAGTCCCCTG----------------------------------------------------------------GAGATAA-AGACCGAGAAGCA---GCAG---------------------------------CGA----------CAACAGCAGCA---CCACCACC---AACAC---------------------------C------AGCACCAGCAGCAGCAACAACAG---CAGCAAC---AGCA------------------G------CAACACCAGC---A------------GCAACATCA---GCAGCAATACCAGCAGCA---ACACTA----TCAGCAACAT------------TA------------TCAGCAGCAGCAGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................CAC---------------------------C------AGCACCAGCAGCAGCA.........................................................................................................................................................................20110.09101000000000
...................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACAG---CAG............................................................................................................................................................20200.05101000000000
............................................................................................................................................................................................................................................................................................AACAACAG---CAGCAAC---AGCA------------------...............................................................................................................................19200.05101000000000
...................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACAG---CAGCAAC---A....................................................................................................................................................25200.05100100000000
.............................................................................................................................................................................................................................................................................................ACAACAG---CAGCAAC---AGCA------------------G------CA......................................................................................................................21200.05101000000000
............................................................................................................................................................................................................................................................................................AACAACAG---CAGCAAC---AGCA------------------G------........................................................................................................................20200.05101000000000
....................................................................................................................................................................................................................................................................................................................................................CAGC---A------------GCAACATCA---GCAGC.............................................................................19200.05110000000000
.......................................................................................................................................................................................................................................................................................GCAGCAACAACAG---CAGCAAC---AGCA------------------...............................................................................................................................24200.05101000000000
...........................................................................................................................................................................................................................................................................................CAACAACAG---CAGCAAC---AG...................................................................................................................................................18200.05101000000000
droEre2
GCA-------------------------------CAG----------------------C--A-GCAACAGCAGC---------------------------------------AGCAAC---AACATCGC-------------------------------------TAATAACAGCTATA----------------------------------AGAGAAGC---AGCAGCAGC------------------GGCAACAAC------AGCACTAACAGAAGCAGCAGCAGCAAC---------------AACAGCAGTTTAAACAT------CAGCAACAAGAATG------------ACAGCAAC---AGCACTAACAGCAA---CAACAACAGCC----GC---AGCGA------------CA------------ACATCGACGGCGACGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................CAGCAGCAGCAAC---------------AACAGCAGTTT....................................................................................................................................2411.0010000010
............................................................................................................................................................................................................................................................................................AGCAGCAGCAAC---------------AACAGCAGT......................................................................................................................................2130.3310001000
.........................................................................................................................................................................................................................GAGAAGC---AGCAGCAGC------------------GG......................................................................................................................................................................................................1830.3310000010
...................................................................................................................................................................................................................................AGCAGCAGC------------------GGCAACAAC------AGC......................................................................................................................................................................................2150.2011000000
.....................................................................AGCAGC---------------------------------------AGCAAC---AACATC.....................................................................................................................................................................................................................................................................................................................................18200.0510000010

Generated: 05/19/2015 at 09:51 PM