ID:

dvi_19953

 Coordinate:

scaffold_13049:14536685-14536970 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.0 -13.0 -13.0

Flybase annnotation

CDS [Dvir\GJ13565-cds]; exon [dvir_GLEANR_13448:4]; exon [dvir_GLEANR_13448:3]; CDS [Dvir\GJ13565-cds]; intron [Dvir\GJ13565-in]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGTGCAAGGATATGGGTGTGCTTTTTGGTCGCGGTGGTCTCAATGGCAATGTAAGTTGTGGCTGTCTGGCAACGCCAAAATATTTGTGTGTCCATATTAAGTTGGCTGCGCCTGAATATTGTGTGTCCATATTAAGTTGGTTGCGCCTGAACATTTAACGAAATGTTTCGACTGTATATAAAATCATCTTTCGGGCTGCCCATTGTTTTGTCTGTTGTAACTCTTTCATAAGAACCTACACAAACTAATCAGTATTATGTTTATGTTCCCTTCTCTGTTCCTATCCCTATCTCCATGCATCTCTGTATCGAATGTTGTACCCACAATTCTTTGCAGGTGCTGCGCATAAAGCCGCCCATGTGCATTAACCGCACCGATGTCAGGTT
********************************************************************************************************************************************************************************................(((.(((..((((.((.((.(((.(((..((((....))))...)))))).)).)).))))......................................((.(((((....))))).)).....))))))......********************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 M027
male body		 SRR060664
9_males_carcasses_total
 M028
head
 SRR060666
160_males_carcasses_total
 GSM1528803
follicle cells		 SRR060676
9xArg_ovaries_total
 SRR060679
140x9_testes_total
 SRR060677
Argx9_ovaries_total
 SRR060689
160x9_testes_total
 SRR060656
9x160_ovaries_total
 SRR060658
140_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060680
 9xArg_testes_total
 SRR060681
Argx9_testes_total
 V053
head
................................................................................................................................................................................TATAAAATCATCTTTCGGGCT............................................................................................................................................................................................. 21 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AAAATCATCTTTCGGGCTGCC.......................................................................................................................................................................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................TCGAATGTTGTACCCACAATT.......................................................... 21 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TTGTTTTGTCTGTTGTAACTC................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTCGGGCTGCCCATTGTTTTG................................................................................................................................................................................ 21 0 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....AAGGATATGGGTGTGCTTTTTGGTCGC.................................................................................................................................................................................................................................................................................................................................................................. 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................GTGCTTTTTGGTCGCGGT............................................................................................................................................................................................................................................................................................................................................................... 18 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................CTCTGTATCGAGTGTTGTACC................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...GCAAGGATATGGGTGTGCTT........................................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................GTGCTTTTTGGTCGCGGTGGT............................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................................................................................................AATGTGCTGCGCATAAAGCCGCCCAT........................... 26 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................TTAAGTTGGTTGCGCCTGAACT......................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............GGTGTGCTTTTTGGTCGCG................................................................................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TGTGGGTGTGCTTTTTGGTCGC.................................................................................................................................................................................................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................TGTGCTTTTTGGTCGCGGTGG............................................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CTTTTTGGTCGCGGTGGTCTCAAT...................................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........ATATGGGTGTGCTTTTTGGT..................................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........ATGGGTGTGCTTTTTGGTCGC.................................................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................ACCCACAATTCTTTGCAGGTG............................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................CGCGGTGGTCTCAATGGCAAT................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........ATATGGGTGTGCTTTTTGGTCGC.................................................................................................................................................................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................TTTGCAGGTGCTGCGCATA...................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTGTCTGTTGTAGCTCTTTCA.............................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GATATGGGTGTGCTTTTTGGTCGCGG................................................................................................................................................................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TATGGGTGTGCTTTTTGGTCG................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................CATGTGCATTACCCGCACCGA......... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................ATTAACCGCACCGAGGTAAGGTT 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................ATTGACCGCGCCGATGTCGGG.. 21 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CGTGCAAGGATATGGGTGTGCTTTTT........................................................................................................................................................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................ATGTTGTGTGTCCATATTAAG.......................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................TGTAAGTTGTGGCTGTCTGGC............................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................ATCCCTATCTCCATGCATCT.................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................TTAACCGCACCGATGTCAGGT. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAGTTGTGGCTGTCTGGCAA.......................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................ATCTCTGTATCGAGTGTTGTA................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TGTGTCCATATTAAGTTGGCT....................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................TCTCTGTATCGAGTGGTGTAC.................................................................. 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...GCAAGGATATGGGTGTGCTTTC......................................................................................................................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................ATGTTTATGTTCCCTTCTCT.............................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TTGGTCGCGGTGGTCTCAATG..................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................AATGGCAATGTAAGTTGTGGC.................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CTTTTTGGTCGCGGTGGTCT.......................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................ATAAAGCCGCCCATGTGCATT.................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................................................CCTATCTCCATGCATCTCTGT................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........TATGGGTGTGCTTTTTGGT..................................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................TTTGGTCGCGGTGGTCTCAATGGC................................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...GCAAGGATATGGGTGAGCT............................................................................................................................................................................................................................................................................................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........ATGGGTGTGCTTTTTGGTCG................................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................CTATCTCCATGCATCTCTGTA............................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CAAGGATATGGGTGTGCTT........................................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................CATGCATCTCTGTATCGAATG........................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GTTGTGTGTCCATATTAGGTT........................................................................................................................................................................................................................................................ 21 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTTGTGTGTCCATATTAGGTT........................................................................................................................................................................................................................................................................................... 21 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TCTGGGAACGCGAAAATAT............................................................................................................................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TATTAAGTTGGCTGCGCCTGA............................................................................................................................................................................................................................................................................... 21 0 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................TTATGGTCCGTTGTCTGTTCC......................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................GCATATTGGTCTCGGTGGTC........................................................................................................................................................................................................................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................GTGCTTTGTAGTCGCGGTGT............................................................................................................................................................................................................................................................................................................................................................. 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................................................................TATGGTCCGTTGTCTGTTCC......................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................AAATCGTTGTAGGTGCTGCG.......................................... 20 3 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................CATTGGAGGTGCTACGCATA...................................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........ATATGGGTGTGCGTTTGG....................................................................................................................................................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..........GATGGGTGTGATTTTCGGT..................................................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GCACGTTCCTATACCCACACGAAAAACCAGCGCCACCAGAGTTACCGTTACATTCAACACCGACAGACCGTTGCGGTTTTATAAACACACAGGTATAATTCAACCGACGCGGACTTATAACACACAGGTATAATTCAACCAACGCGGACTTGTAAATTGCTTTACAAAGCTGACATATATTTTAGTAGAAAGCCCGACGGGTAACAAAACAGACAACATTGAGAAAGTATTCTTGGATGTGTTTGATTAGTCATAATACAAATACAAGGGAAGAGACAAGGATAGGGATAGAGGTACGTAGAGACATAGCTTACAACATGGGTGTTAAGAAACGTCCACGACGCGTATTTCGGCGGGTACACGTAATTGGCGTGGCTACAGTCCAA
**********************************************************................(((.(((..((((.((.((.(((.(((..((((....))))...)))))).)).)).))))......................................((.(((((....))))).)).....))))))......******************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 SRR060676
9xArg_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060675
140x9_ovaries_total
 SRR060681
Argx9_testes_total
 M027
male body		 SRR060655
9x160_testes_total
 SRR060657
140_testes_total
 SRR060664
9_males_carcasses_total
 SRR060673
9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060680
 9xArg_testes_total
 SRR060683
160_testes_total
 M028
head
 SRR060672
9x160_females_carcasses_total
 SRR060687
9_0-2h_embryos_total
 SRR060654
160x9_ovaries_total
 SRR060658
140_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060670
9_testes_total
 SRR060671
9x160_males_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060689
160x9_testes_total
 V053
head
 SRR060678
9x140_testes_total
 SRR060682
9x140_0-2h_embryos_total
 GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................GGTACGTAGAGACATAGCTTA......................................................................... 21 0 1 2.00 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................TACAACATGGGTGTTAAGAA....................................................... 20 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CCGACGGGTAACAAAACAGA............................................................................................................................................................................. 20 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................TGTTTGATTAGTCATAATACA.............................................................................................................................. 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................CGTAGAGACATAGCTTACAAC..................................................................... 21 0 1 2.00 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................ACAACATGGGTGTTAAGAA....................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................AAAGCTGACATATATTTTAGT........................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TGGACTTATAACACACAGGTAT............................................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................AGGTACGTAGAGACATAGCTT.......................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAAGTATTCTTGGATGTGTTT.............................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................GCGCCACCAGAGTTACCGTTA................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................GGCGGGTACACGTAATTGGCG.............. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................GAAACGTCCACGACGCGTATT..................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................TCGGCGGGTACACGTAATTGG................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................CAAGGGAAGAGACAAGGGTAG..................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................GAGGTACGTAGAGACATAGCT........................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CGACGGGTAGCAAAACAGACA........................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................ACCGTTACATTCAACACCGAC.................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................CAAGGTTTGGGATAGAGG............................................................................................ 18 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................CAAGGGAAGAGGCAAGGGTAG..................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............ACCCACACGAGGAACCAGCGCC................................................................................................................................................................................................................................................................................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................GTCCACGGCGCGTATTTCGG................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................TTACAACATGGGTGTTAAGGA....................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................TAGAGACATAGCTTGCAACGT................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................CGCCACCAGAGTTACCGTTAC............................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................GTAGAGACATAGCTTACAACAT................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CGACGGGTAACAAAACAGGCA........................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GACGCGGACTTATAACACACA.................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................GGAAGAGACAAGGATAGGGAT................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................GTACACGTGATTGGCGTGGCTA........ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................AAAGCTGACATATATTTCACT........................................................................................................................................................................................................ 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................AGAGGTACGTAGAGACATAGC............................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................TGCGGACTTGTAAATTGCTTTA.............................................................................................................................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................TCGCCTCCAACATGGGTGTTA........................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................CAAGGGGAGAGACAAGGGTAG..................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................GCGGACTTGTAAATTGCTTTA.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................CGCCACCAGAGTTACCGTTA................................................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CAACCAACGCGGACTTGTAAG...................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................AGGGTAGGGATAGAGGTACGT....................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................ACAAGGGAAGAGACAAGGATA...................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................GCGGGCTTATAACACACAGGT................................................................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................ATAGAGGTACGTAGAGACATA.............................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................GGGATAGAGGTACGTAGAGAC................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................GCCCGACGGGTAACAAAACA............................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................GGATAGGGATAGAGGTACGT....................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................GTAGAGACATAGCTTACAAC..................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GAAACAGACAACATTGAGAAA................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................ACCAGCGCCACCAGAGTTACC.................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................GCGGGTACACGTAATTGGC............... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CGACGGGTAACAAAACAGACA........................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................AAGGGAAGCGACCAGGAT....................................................................................................... 18 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................CAAGGGAAGAGACAAGGATAG..................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................GGAGCTGACATATATTTTAGT........................................................................................................................................................................................................ 21 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................CCAGCGCCACCAGAGTTGTC.................................................................................................................................................................................................................................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TCAGACCGTTGCGGTTTTATAA.............................................................................................................................................................................................................................................................................................................. 22 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CCGACGGGTGACAGAACAGGC............................................................................................................................................................................ 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CAGACAACGTTGAGGAAGTGT............................................................................................................................................................ 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................AAGGTTTGGGATAGAGGGAC......................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................................................................................GAGGTATGTAGCGACATG.............................................................................. 18 3 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 0
.............................................................................................................................................................................................................................AAAAAGTATGCTTGGATATGT................................................................................................................................................ 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................GGATGAGGCGAGGATAGGGA.................................................................................................. 20 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................AAGCTGCCATATATTTGA.......................................................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................ACCGACGCGCTCTTCTAACA........................................................................................................................................................................................................................................................................ 20 3 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................................TGGGGAGGCTACTGTCCA. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................ACAAGCTGCCATATATTT............................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................................................AAGGAAGAGAGAAGGATA...................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:14536635-14537020 + dvi_19953 CGTGCAAGGATATGGGTGTGCTTTTTGGTCGCGGTGGTCTCAATGGCAATGTAAGTTGTG-GCTGTCTGGCAACGCCAAAATATTTGTGTGTCCATATTAAGTTGGCTGCGCCTGAATATTGTGTGTCCATATTAAGTTGGTTGCGCCTGAACATT-TAACGAAATGTTTCGACTGTAT--ATAAAATCATCTT----TCGGGCTGCCCATT----GTT----TT----------------------------------GTCTGTTG----------------------------------------------------------------TAACTCTTTCATAAGAACCTACACAAACTAATCAGTATTATGTTTATGTTCC---------CTT---CTCTGTTCCTATCCCTA--------------TC--TCC--ATGCATCTCTGTATCGAATGTTGTACC-CACAAT-TCTTTGCAGGTGCTGCGCATAAAGCCGCCCATGTGCATTAACCGCACCGATGTCAGGTT
droMoj3 scaffold_6680:12762374-12762526 - TAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATCAT-TTCCTCC-T-ACATATCT-----AATA-----------------------------------------------------------------------------------------CGT-----------------------------------ATTATCTTTTTGCTCC---------TCT--------TC------CCGA----TTCGCTGCTCCT--TTC--ATGCATC---------------GTACCACAAAAC-CCTTTGCAGGTGCTGCGCATTAAGCCACCCATGTGCATTAATCGCGCCGATGTCAAATT
droGri2 scaffold_15110:15695443-15695696 - TG-GCAACGC---CAGAATATTATTTATATGCGCATGT-------------TAAGCAGAA-CTTTTGT-----------------------------------------------------------------------------------------AAATGCCAT---------------GTTTCATCATCTT----GTGGGCTTCTTAAT----GTG----TTGCATTT-----GATT--CC--AATT--CCAAT--TCCCACTTA-----------------------------------------------GCTT-CCTTT-TGTTGT---------------------------------------------------ATTTCTGTGTTTT---TC-----------------------CCTTCTT--TTC--ATGCATCTCCTTATCGACTGTTGTTCG-CACACTCTTTTTGCAGGTTCTACGCATTAAGCCGCCCATGTGCATTAATCGGGCGGATGCCAAGTT
droWil2 scf2_1100000004768:2386509-2386564 + AATGCAAGGATCTGGGCGTACTTTTCGGACGCGGCGGTCTCGATGGAAATGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group8:407587-407907 - CGTGCAAGGATCTTGGTGTGCTCTTCGGACGCGGTGGCCTCCATGGCAACGTAAGTAGAA-ATCATCGAT--------------------------------------------------------------------------------------CATGAGTTA--------------TCAGTGCATCCGCAT----CTGGGATATTCCGTTCCATTTTTGGGCACATCT-----GACTAACC--AAAGCACTCACGTTCCCGTTGATGAAAGGGTTACCGGAACTAAGAGCTTAGTCCTCG-CCGCTCTGGGGGCTCTTCCCG-GAGCAA---------------------------------------------------ATC-GCACCTCTT---TGCGTC------TCTA----TCTTTGCATCCCTTTTC--GTGCAT------------------------------CTCCACAGGTCCTGCGCATCAAGCCTCCCATGTGCATCGATCGATCGGATGTGAAGTT
droPer2 scaffold_96:68825-69145 + CGTGCAAGGATCTTGGTGTGCTCTTCGGACGCGGTGGCCTCCATGGCAACGTAAGTAGAA-ATCATCGAT--------------------------------------------------------------------------------------CATGAGTTA--------------TCAGTGCATCCGCAT----CTGGGATATTCCGTTCCATTTTTGGGCACATCT-----GACTAACC--AAAGCACTCACGTTCCCGTTGATGAAAGGGTTCCCGGAACTAAGAGCTTAGTCCTCG-CCGCTTTGGGGGCTCTTTCCG-GAGCAA---------------------------------------------------ATC-GCACCTCTT---TGCGTC------TCTA----TCTTTGCATCCCTTTTC--GTGCAT------------------------------CTCCACAGGTCCTGCGCATCAAGCCTCCCATGTGCATCGATCGATCGGATGTGAAGTT
droAna3 scaffold_13337:22491498-22491771 - dan_2786 CGTGCAAAGATCTGGGAGTGTTGTTCGGACGTGGAGGGCTACACGGAAATGTAAGTTTTA-TCCA-----------------------------------------------------------------------------------------------------------------------ATATCCGAA---------GCTGCTTCGCCCGGTATTACAGCTCATCT-----TACTAACC--AAGACTCT----------TAAG----AGAGTTTCTAGG----CTAACTT-------GGGTTCT---GTGGCACTCTTTA-AGGC-C---------------------------------------------------ACTATCATATTCGTTCTTTGTC------TTTATACATATGCGCATCT---CTT--ATTCAC------------------------------TTTCCCAGGTACTACGCATTAAGCCGCCTATGTGCATTAATAAAGCGGATGCAAAGTT
droBip1 scf7180000396426:359121-359177 + CGTGCAAGGACCTCGGAGTGTTGTTCGGACGTGGTGGGCTACACGGAAATGTGAGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000299918:134401-134459 - T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCACAGGTTCTACGCATCAAGCCTCCCATGTGCATCAACCGGCAAGACGTAAAGTT
droFic1 scf7180000453830:293610-293906 + AGTGCAAGGACCTGGGCGTGCTCTTCGGACGCGGCGGCCTTCACGGAAACGTAAGTGAAA-GCCT-TT-----------------------------------------------------------------------------------------AT----CC----------------CGTGCATCTTCAT----TTGGGCTCTATCGTCCTCGTTC-TGGCACCTTTAACAAGACTAACT--ATAAA-CCTGC--GTCGGCTGA----AGGATTTCCAGG----CGAGCTG-------G-ACTCCCTGGAGGCTCTTCCTC-CGGCGC---------------------------------------------------ACCCGCACCCCTT--TCCTGTC------TCTA----TCTGTGCATCCT--TTC--GTGCGT------------------------------CTTCACAGGTTCTGCGCATCAAGCCTCCCATGTGCATAAATCGGGCTGACGCGAAGTT
droEle1 scf7180000491033:173838-174136 + AGTGCAAGGATCTGGGCGTGCTTTTCGGACGCGGAGGCCTCCATGGAAACGTAAGTGTCAACCTTTTCGT----------------------------------------------------------------------------------------TGGGCTG----------------AGTGCATCCTCAT----CTGGGCTCTTCTGTCCTCGTTC-GGGCACATCT-----GACTAACA--AGAAA-CCGAC--CTCGGCTAA----AGAGCCCCCAGG----CGAGATG-------A-CCTCCCTGGTGGCTTTTTCTTCGAGCGC---------------------------------------------------ATCATCAACTCCT---CCTGTT------TCTA----TCTGTGCATCCT--TTC--GTGCAT------------------------------TTCCACAGGTTCTGCGCATCAAGCCTCCCATGTGCATCAATCGGGCTGACGCGAAGTT
droRho1 scf7180000765797:2927-3221 + AGTGCAAGGACCTCGGCGTGCTCTTCGGACGCGGAGGCCTTCATGGAAACGTAAGTGGAA-ACTTTTCAT----------------------------------------------------------------------------------------TGGGCTG----------------AGTGCATCCTCAT----CTGGGTTCTACCGTCCTCATTC-GGGCACATCT-----GACTAACG--AAAA--CCGAC--CTCCGCTGA----AGGGCCCCCAAG----CGAGCAG-------G-ACTCCTTAGAGGCTCTTTTTC-GGGCGC---------------------------------------------------ATCGTCACGTCCT---CCT-TT------TCTA----TCTGTGCATCCT--TTC--GTGCAT------------------------------TTACACAGGTTCTGCGCATCAAGCCGCCCATGTGCATCAATCGGGCGGACGCGAAGTT
droBia1 scf7180000302377:496703-496993 + AGTGTAAGGATTTAGGTGTTCTCCTTGGACGCGGTGGTCTCCATGGAAACGTAAGTAGAA-GCTTCTCC----------------------------------------------------------------------------------------GAGGGCTA----------------GGTGCATCCTCAT----CCGGGCTCTTCCGTTCTCGTTT-T-GCACGTCT-----AACTAACA--AGAA--ATTGC--CCCCGTTAA----AGACTCTCAAGG----CGAGCTG-------G-ACGCTTTGAAGGTTTATCTTC-GGGTGC---------------------------------------------------ATTATTA----TT---CCTGTC------TCTA----TCTGTACATCCT--TTC--GTGCAT------------------------------TTTCACAGGTACTGCGAATTAAACCCCCCATGTGCATCACTCGGGCTGACGCCAAGTT
droTak1 scf7180000415270:98245-98312 - AGTGCAAGGACTTGGGCGTGCTCTTCGGACGCGGTGGTCTTCATGGAAACGTAAGTAGAA-GCTTTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409801:312819-313110 - AGTGCAAGGACCTGGGCGTGCTCTTCGGACGTGGAGGTCTTCATGGAAATGTAAGTGAGA-TCTATTCGT----------------------------------------------------------------------------------------TGGGCGA----------------AGTGCGTTCTAGT----CGGGGATCTTCTGTCGTCATTC-T-GCACATCT-----GACTAACACTATTAC---------CCCGATGA----AGAGTCCCCAAA----CGAGCTG-------G-TCTCTTTGGATGCTCTTTATC-CGGCGA---------------------------------------------------GTCATCATTTCCT---CCTGTC------TCTA----TCGGTGCATCCT--TTC--GTGCAT------------------------------TTTCACAGGTTCTGCGCATCAAGCCTCCCATGTGCATCACTCGGGCTGACGCGACGTT
dm3 chr3L:22727787-22727845 - T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCACAGGTTCTGCGCATTAAGCCTCCCATGTGCATCACGCTGGCTGATGCCAAGTT
droSim2 3l:22231941-22232212 - dsi_13800 AGTGCAAGGACCAAGGTGTGCTCTTTGGACGCGGCGGCCTTCATGGAAATGTAAGTGAGG--CTTCTT-----------------------------------------------------------------------------------------ATGGGCCA----------------AGTTCATCCTCAT----TTGGGCTCGTCTGTCTTCGTAC-T-GCACGTCC-----GACTAACA--AAAA--TTCGT--GTTTGTTGA----AGAGTCTCCA-C----CGAGAAC-------G-AATCTTT--------------------------------------------------------------------------CATCATCTTCT---CCTGTC------TCTA----TTGGTGCATCAT--TTCCCTTCCAT------------------------------TTCCACAGGTTCTGCGCATTAAGCCTCCCATGTGCATCACGCTGGCTGATGCCAAGTT
droSec2 scaffold_11:2648591-2648862 - AGTGCAAGGACCAAGGTGTGCTCTTTGGACGCGGCGGCCTTCATGGAAACGTAAGTGGGC-C-TTCTT-----------------------------------------------------------------------------------------ATGGGCCA----------------AGTTCATCCTCAT----TTGGGCTCGTCTGTCTTCGTAC-T-GCACGTCC-----GACTAACA--AAAA--TTAGT--GTTTGTTGA----AGAGTCTCCA-C----CGAGAAC-------G-AATCTTTG--------------------------------------------------------------------------ATCATCTTCT---CCTGTC------TCTA----TTGGTGCATCAT--TTCCCTTCCAT------------------------------TTCCACAGGTTCTGCGCATTAAGCCTCCCATGTGCATCACGCTGGCTGATGTCAAGTT
droYak3 3L:23215682-23215958 - AGTGTAAGGACCTAGGAGTGCTCTTCGGACGCGGGGGTCTTCATGGAAACGTAAGTAAGC-CCTTTTT-----------------------------------------------------------------------------------------ATGGGCTA----------------AGCTCATCCTCATCCATTTGAGCTCGTCTGTCCTCGTTC-T-GCACGTCT-----GTCTAACA--AAAAA-CC--T--GTCTGTTGA----AGAGTCCGCAGC----CGAGCAC-------A-ACTCCGT--------------------------------------------------------------------------AATCATCTCCT---TCTGTC------TCTA----TTCGTGCATTTT--TTCCTTTCCAT------------------------------TTCCACAGGTTCTCCGCATTAAGCCTCCCATGTGCATCACGCTGGCTGACGCGAACTT
droEre2 scaffold_4784:22378640-22378695 - AGTGCAAGGACCTAGGAGTGCTCTTTGGACGCGGAGGTCTTCATGGAAACGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CGTGCAAGGATATGGGTGTGCTTTTTGGTCGCGGTGGTCTCAATGGCAATGTAAGTTGTG-GCTGTCTGGCAACGCCAAAATATTTGTGTGTCCATATTAAGTTGGCTGCGCCTGAATATTGTGTGTCCATATTAAGTTGGTTGCGCCTGAACATT-TAACGAAATGTTTCGACTGTAT--ATAAAATCATCTT----TCGGGCTGCCCATT----GTT----TT----------------------------------GTCTGTTG----------------------------------------------------------------TAACTCTTTCATAAGAACCTACACAAACTAATCAGTATTATGTTTATGTTCC---------CTT---CTCTGTTCCTATCCCTA--------------TC--TCC--ATGCATCTCTGTATCGAATGTTGTACC-CACAAT-TCTTTGCAGGTGCTGCGCATAAAGCCGCCCATGTGCATTAACCGCACCGATGTCAGGTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................T--ATAAAATCATCTT----TCGGGCT.......................................................................................................................................................................................................................................................................................................................................2112.002100000000000000000000000000000000000000100000000000000000000000
.......................................................................................................................................................................................AAAATCATCTT----TCGGGCTGCC....................................................................................................................................................................................................................................................................................................................................2112.002200000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAATGTTGTACC-CACAAT-T..........................................................2112.002000000000000000000000000000002000000000000000000000000000000000
..................................................................................................................................................................................................................TT----GTT----TT----------------------------------GTCTGTTG----------------------------------------------------------------TAACTC...................................................................................................................................................................................................2112.002020000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................T----TCGGGCTGCCCATT----GTT----TT----------------------------------G................................................................................................................................................................................................................................................................................2112.002000000000000001000000010000000000000000000000000000000000000000
.....AAGGATATGGGTGTGCTTTTTGGTCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002001000000000000000000000000000000000000000000000000000000000010
.................GTGCTTTTTGGTCGCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000000000000000000000000000000000000000000000000000000002
...GCAAGGATATGGGTGTGCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.................GTGCTTTTTGGTCGCGGTGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
....................................................................................................................................TTAAGTTGGTTGCGCCTGAACT..........................................................................................................................................................................................................................................................................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
..............GGTGTGCTTTTTGGTCGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
................TGTGCTTTTTGGTCGCGGTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....................CTTTTTGGTCGCGGTGGTCTCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
.........ATATGGGTGTGCTTTTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
...........ATGGGTGTGCTTTTTGGTCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACC-CACAAT-TCTTTGCAGGTG...............................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................CGCGGTGGTCTCAATGGCAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........ATATGGGTGTGCTTTTTGGTCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAGGTGCTGCGCATA......................................1911.001001000000000000000000000000000000000000000000000000000000000000
........GATATGGGTGTGCTTTTTGGTCGCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
..........TATGGGTGTGCTTTTTGGTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
CGTGCAAGGATATGGGTGTGCTTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000001000000000000000000000000000000000000000000000000000000
.................................................TGTAAGTTGTG-GCTGTCTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCTA--------------TC--TCC--ATGCATCT......................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACCGCACCGATGTCAGGT.2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................AAGTTGTG-GCTGTCTGGCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................TGTGTCCATATTAAGTTGGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
...GCAAGGATATGGGTGTGCTTTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................................................ATGTTTATGTTCC---------CTT---CTCT..................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
........................TTGGTCGCGGTGGTCTCAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
.........................................AATGGCAATGTAAGTTGTG-GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
....................CTTTTTGGTCGCGGTGGTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGCCGCCCATGTGCATT....................2111.001000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CCTA--------------TC--TCC--ATGCATCTCTGT..................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
..........TATGGGTGTGCTTTTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000100000000000000000000000000000000000000000000000000000
.......................TTTGGTCGCGGTGGTCTCAATGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000010000000000000000000000000000000000000000000000000
...........ATGGGTGTGCTTTTTGGTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000100000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CTA--------------TC--TCC--ATGCATCTCTGTA.................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
....CAAGGATATGGGTGTGCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................C--ATGCATCTCTGTATCGAATG..........................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
...............................................................................................TATTAAGTTGGCTGCGCCTGA................................................................................................................................................................................................................................................................................................................................................................................................................................2130.331000000000000000000000000000100000000000000000000000000000000000
droMoj3
TAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATCAT-TTCCTCC-T-ACATATCT-----AATA-----------------------------------------------------------------------------------------CGT-----------------------------------ATTATCTTTTTGCTCC---------TCT--------TC------CCGA----TTCGCTGCTCCT--TTC--ATGCATC---------------GTACCACAAAAC-CCTTTGCAGGTGCTGCGCATTAAGCCACCCATGTGCATTAATCGCGCCGATGTCAAATTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TG-GCAACGC---CAGAATATTATTTATATGCGCATGT-------------TAAGCAGAA-CTTTTGT-----------------------------------------------------------------------------------------AAATGCCAT---------------GTTTCATCATCTT----GTGGGCTTCTTAAT----GTG----TTGCATTT-----GATT--CC--AATT--CCAAT--TCCCACTTA-----------------------------------------------GCTT-CCTTT-TGTTGT---------------------------------------------------ATTTCTGTGTTTT---TC-----------------------CCTTCTT--TTC--ATGCATCTCCTTATCGACTGTTGTTCG-CACACTCTTTTTGCAGGTTCTACGCATTAAGCCGCCCATGTGCATTAATCGGGCGGATGCCAAGTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AATGCAAGGATCTGGGCGTACTTTTCGGACGCGGCGGTCTCGATGGAAATGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................GTACTTTTCGGACGCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.....................TTTTCGGACGCGGCGGTCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.................GTACTTTTCGGACGCGGCGGTCTCGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
dp5
CGTGCAAGGATCTTGGTGTGCTCTTCGGACGCGGTGGCCTCCATGGCAACGTAAGTAGAA-ATCATCGAT--------------------------------------------------------------------------------------CATGAGTTA--------------TCAGTGCATCCGCAT----CTGGGATATTCCGTTCCATTTTTGGGCACATCT-----GACTAACC--AAAGCACTCACGTTCCCGTTGATGAAAGGGTTACCGGAACTAAGAGCTTAGTCCTCG-CCGCTCTGGGGGCTCTTCCCG-GAGCAA---------------------------------------------------ATC-GCACCTCTT---TGCGTC------TCTA----TCTTTGCATCCCTTTTC--GTGCAT------------------------------CTCCACAGGTCCTGCGCATCAAGCCTCCCATGTGCATCGATCGATCGGATGTGAAGTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................TGCTCTTCGGACGCGGTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................TAGAA-ATCATCGAT--------------------------------------------------------------------------------------CATGAG..................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
................TGTGCTCTTCGGACGCGGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGCATCCCTTTTC--GTG...........................................................................................2011.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTC--GTGCAT------------------------------CTCCACAGGT................................................2011.0010100000000
......AGGATCTTGGTGTGCTCTTCGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000001
..........TCTTGGTGTGCTCTTCGGACGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
droPer2
CGTGCAAGGATCTTGGTGTGCTCTTCGGACGCGGTGGCCTCCATGGCAACGTAAGTAGAA-ATCATCGAT--------------------------------------------------------------------------------------CATGAGTTA--------------TCAGTGCATCCGCAT----CTGGGATATTCCGTTCCATTTTTGGGCACATCT-----GACTAACC--AAAGCACTCACGTTCCCGTTGATGAAAGGGTTCCCGGAACTAAGAGCTTAGTCCTCG-CCGCTTTGGGGGCTCTTTCCG-GAGCAA---------------------------------------------------ATC-GCACCTCTT---TGCGTC------TCTA----TCTTTGCATCCCTTTTC--GTGCAT------------------------------CTCCACAGGTCCTGCGCATCAAGCCTCCCATGTGCATCGATCGATCGGATGTGAAGTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
CGTGCAAGGATCTTGGTGTGCTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
droAna3
CGTGCAAAGATCTGGGAGTGTTGTTCGGACGTGGAGGGCTACACGGAAATGTAAGTTTTA-TCCA-----------------------------------------------------------------------------------------------------------------------ATATCCGAA---------GCTGCTTCGCCCGGTATTACAGCTCATCT-----TACTAACC--AAGACTCT----------TAAG----AGAGTTTCTAGG----CTAACTT-------GGGTTCT---GTGGCACTCTTTA-AGGC-C---------------------------------------------------ACTATCATATTCGTTCTTTGTC------TTTATACATATGCGCATCT---CTT--ATTCAC------------------------------TTTCCCAGGTACTACGCATTAAGCCGCCTATGTGCATTAATAAAGCGGATGCAAAGTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........CTGGGAGTGTTGTTCGGACGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droBip1
CGTGCAAGGACCTCGGAGTGTTGTTCGGACGTGGTGGGCTACACGGAAATGTGAGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCACAGGTTCTACGCATCAAGCCTCCCATGTGCATCAACCGGCAAGACGTAAAGTTSizeHit CountTotal NormTotal
No Reads
droFic1
AGTGCAAGGACCTGGGCGTGCTCTTCGGACGCGGCGGCCTTCACGGAAACGTAAGTGAAA-GCCT-TT-----------------------------------------------------------------------------------------AT----CC----------------CGTGCATCTTCAT----TTGGGCTCTATCGTCCTCGTTC-TGGCACCTTTAACAAGACTAACT--ATAAA-CCTGC--GTCGGCTGA----AGGATTTCCAGG----CGAGCTG-------G-ACTCCCTGGAGGCTCTTCCTC-CGGCGC---------------------------------------------------ACCCGCACCCCTT--TCCTGTC------TCTA----TCTGTGCATCCT--TTC--GTGCGT------------------------------CTTCACAGGTTCTGCGCATCAAGCCTCCCATGTGCATAAATCGGGCTGACGCGAAGTTSizeHit CountTotal NormTotal
No Reads
droEle1
AGTGCAAGGATCTGGGCGTGCTTTTCGGACGCGGAGGCCTCCATGGAAACGTAAGTGTCAACCTTTTCGT----------------------------------------------------------------------------------------TGGGCTG----------------AGTGCATCCTCAT----CTGGGCTCTTCTGTCCTCGTTC-GGGCACATCT-----GACTAACA--AGAAA-CCGAC--CTCGGCTAA----AGAGCCCCCAGG----CGAGATG-------A-CCTCCCTGGTGGCTTTTTCTTCGAGCGC---------------------------------------------------ATCATCAACTCCT---CCTGTT------TCTA----TCTGTGCATCCT--TTC--GTGCAT------------------------------TTCCACAGGTTCTGCGCATCAAGCCTCCCATGTGCATCAATCGGGCTGACGCGAAGTTSizeHit CountTotal NormTotal
No Reads
droRho1
AGTGCAAGGACCTCGGCGTGCTCTTCGGACGCGGAGGCCTTCATGGAAACGTAAGTGGAA-ACTTTTCAT----------------------------------------------------------------------------------------TGGGCTG----------------AGTGCATCCTCAT----CTGGGTTCTACCGTCCTCATTC-GGGCACATCT-----GACTAACG--AAAA--CCGAC--CTCCGCTGA----AGGGCCCCCAAG----CGAGCAG-------G-ACTCCTTAGAGGCTCTTTTTC-GGGCGC---------------------------------------------------ATCGTCACGTCCT---CCT-TT------TCTA----TCTGTGCATCCT--TTC--GTGCAT------------------------------TTACACAGGTTCTGCGCATCAAGCCGCCCATGTGCATCAATCGGGCGGACGCGAAGTTSizeHit CountTotal NormTotal
No Reads
droBia1
AGTGTAAGGATTTAGGTGTTCTCCTTGGACGCGGTGGTCTCCATGGAAACGTAAGTAGAA-GCTTCTCC----------------------------------------------------------------------------------------GAGGGCTA----------------GGTGCATCCTCAT----CCGGGCTCTTCCGTTCTCGTTT-T-GCACGTCT-----AACTAACA--AGAA--ATTGC--CCCCGTTAA----AGACTCTCAAGG----CGAGCTG-------G-ACGCTTTGAAGGTTTATCTTC-GGGTGC---------------------------------------------------ATTATTA----TT---CCTGTC------TCTA----TCTGTACATCCT--TTC--GTGCAT------------------------------TTTCACAGGTACTGCGAATTAAACCCCCCATGTGCATCACTCGGGCTGACGCCAAGTTSizeHit CountTotal NormTotal
No Reads
droTak1
AGTGCAAGGACTTGGGCGTGCTCTTCGGACGCGGTGGTCTTCATGGAAACGTAAGTAGAA-GCTTTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AGTGCAAGGACCTGGGCGTGCTCTTCGGACGTGGAGGTCTTCATGGAAATGTAAGTGAGA-TCTATTCGT----------------------------------------------------------------------------------------TGGGCGA----------------AGTGCGTTCTAGT----CGGGGATCTTCTGTCGTCATTC-T-GCACATCT-----GACTAACACTATTAC---------CCCGATGA----AGAGTCCCCAAA----CGAGCTG-------G-TCTCTTTGGATGCTCTTTATC-CGGCGA---------------------------------------------------GTCATCATTTCCT---CCTGTC------TCTA----TCGGTGCATCCT--TTC--GTGCAT------------------------------TTTCACAGGTTCTGCGCATCAAGCCTCCCATGTGCATCACTCGGGCTGACGCGACGTTSizeHit CountTotal NormTotal
No Reads
dm3
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCACAGGTTCTGCGCATTAAGCCTCCCATGTGCATCACGCTGGCTGATGCCAAGTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCATTAAGCCTCCCATGTGCATC....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCACAGGTTCTGCGCATT......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGCATTAAGCCTCCCATGTGCA......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCCTCCCATGTGCATCACGCTGGC............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
droSim2
AGTGCAAGGACCAAGGTGTGCTCTTTGGACGCGGCGGCCTTCATGGAAATGTAAGTGAGG--CTTCTT-----------------------------------------------------------------------------------------ATGGGCCA----------------AGTTCATCCTCAT----TTGGGCTCGTCTGTCTTCGTAC-T-GCACGTCC-----GACTAACA--AAAA--TTCGT--GTTTGTTGA----AGAGTCTCCA-C----CGAGAAC-------G-AATCTTT--------------------------------------------------------------------------CATCATCTTCT---CCTGTC------TCTA----TTGGTGCATCAT--TTCCCTTCCAT------------------------------TTCCACAGGTTCTGCGCATTAAGCCTCCCATGTGCATCACGCTGGCTGATGCCAAGTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................CTTTGGACGCGGCGGCCTTCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
.................................................................................................................................................................................................T----TTGGGCTCGTCTGTCTTCG...........................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
...........CAAGGTGTGCTCTTTGGACGCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
.............................................................................................................................................................................................................CGTCTGTCTTCGTAC-T-GCACGTCC-----GACT....................................................................................................................................................................................................................................................................................................2811.00101000000000000000
....................................................................................................................................................................................................................CTTCGTAC-T-GCACGTCC-----GAC.....................................................................................................................................................................................................................................................................................................2011.00100000100000000000
AGTGCAAGGACCAAGGTGTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
......AGGACCAAGGTGTGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000001000000000
.....AAGGACCAAGGTGTGCTCTTTGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
.....................................................................................................................................................................................................................TTCGTAC-T-GCACGTCC-----GACC....................................................................................................................................................................................................................................................................................................2011.00101000000000000000
droSec2
AGTGCAAGGACCAAGGTGTGCTCTTTGGACGCGGCGGCCTTCATGGAAACGTAAGTGGGC-C-TTCTT-----------------------------------------------------------------------------------------ATGGGCCA----------------AGTTCATCCTCAT----TTGGGCTCGTCTGTCTTCGTAC-T-GCACGTCC-----GACTAACA--AAAA--TTAGT--GTTTGTTGA----AGAGTCTCCA-C----CGAGAAC-------G-AATCTTTG--------------------------------------------------------------------------ATCATCTTCT---CCTGTC------TCTA----TTGGTGCATCAT--TTCCCTTCCAT------------------------------TTCCACAGGTTCTGCGCATTAAGCCTCCCATGTGCATCACGCTGGCTGATGTCAAGTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................GTTTGTTGA----AGAGTCTCCA-C----CT..................................................................................................................................................................................................................................................2211.0011000
droYak3
AGTGTAAGGACCTAGGAGTGCTCTTCGGACGCGGGGGTCTTCATGGAAACGTAAGTAAGC-CCTTTTT-----------------------------------------------------------------------------------------ATGGGCTA----------------AGCTCATCCTCATCCATTTGAGCTCGTCTGTCCTCGTTC-T-GCACGTCT-----GTCTAACA--AAAAA-CC--T--GTCTGTTGA----AGAGTCCGCAGC----CGAGCAC-------A-ACTCCGT--------------------------------------------------------------------------AATCATCTCCT---TCTGTC------TCTA----TTCGTGCATTTT--TTCCTTTCCAT------------------------------TTCCACAGGTTCTCCGCATTAAGCCTCCCATGTGCATCACGCTGGCTGACGCGAACTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........CCTAGGAGTGCTCTTCGGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
AGTGTAAGGACCTAGGAGTGCTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
........GACCTAGGAGTGCTCTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...GTAAGGACCTAGGAGTGCTCTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCATCACGCTGGCTGACGCG.....2420.50100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCTGGCTGACGCGAACC.1920.50110000000000
droEre2
AGTGCAAGGACCTAGGAGTGCTCTTTGGACGCGGAGGTCTTCATGGAAACGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
AGTGCAAGGACCTAGGAGTGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
..........................GGACGCGGAGGTCTTCATGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
AGTGCAAGGACCTAGGAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.....AAGGACCTAGGAGTGCTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100

Generated: 05/17/2015 at 05:03 AM