ID:

dvi_1984

 Coordinate:

scaffold_12726:2027593-2027798 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.8 -2.3 -2.2

Flybase annnotation

exon [dvir_GLEANR_15526:5]; exon [dvir_GLEANR_15526:6]; CDS [Dvir\GJ15201-cds]; CDS [Dvir\GJ15201-cds]; intron [Dvir\GJ15201-in]

Repeatable elements

NameClassFamilyStrand
GA-richLow_complexityLow_complexity+

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTGCTGGCCTGTCTGACCGATTTCTTTACCAATAGCAAAGATTTTGTTCGGTGAGTTCCACGCAAAGAGTCTGAGACAAGCTCACGTCTACATTTTGTAAGACTCGAGTATCCCCGTCTACATCTACATGCCACTTTTTAACTCTCTCTCTCTCTCTCACTCTTTTACTCTCTCCCGCTCGCTCTCGCGCTCTCTCTCTCTCTCTCTCTCTCTCACTCTCTATCTATCTATCTATGTCTACTCGTTTACCCAACAGCGTTGAACGCGGCATCAAAGCTGGTGATTTTCTATTTACGTATAAGTCGA
*********************************************************************************************************************..............................................................(((....)))...................................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 GSM1528803
follicle cells		 M028
head
 SRR060679
140x9_testes_total
 M061
embryo
 V053
head
 SRR060672
9x160_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 M027
male body		 SRR060668
160x9_males_carcasses_total
 SRR060664
9_males_carcasses_total
 SRR060667
160_females_carcasses_total
.........................................TTTTGTTCGGTGAGTTCCAC..................................................................................................................................................................................................................................................... 20 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TCAGTCTTTTACTCTCTCCC.................................................................................................................................. 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.............TGACCGATTTCTTTACCAATAGCA............................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
TTGCTGGCCTGTCTGACC................................................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....GGCCTGTCTGACCGATTTCT......................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................GATTTTCTATTTACGTATAAGTC.. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................CTACATCTACATGCCACTTTTTAACTC.................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....TGGCCTGTCTGACCGATTTCTTTACC.................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................CTCAGTCTTTTACTCTCTCCA.................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................TACCAATAGCAAAGATTTT..................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................AGCTGGTGATTTTCTATTTACGTATAAG.... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................TCATTCTTTTACTCTCTCC................................................................................................................................... 19 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................ATGTCTACTCGTTTACCCAACAG.................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TCAGTCTTTTACTCTCTCCTG................................................................................................................................. 21 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................TCAGTCTTTTACTCTCTCC................................................................................................................................... 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TCAGTCTTTTCCTCTCTCCC.................................................................................................................................. 20 2 5 0.40 2 0 0 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................ACTGCGATGAACGCGACATC.................................. 20 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
............CTGACCGAATTCTTTAGC.................................................................................................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................TCAGTCTTTTTCTCTCTCCCG................................................................................................................................. 21 2 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................TCACACTTTTGCTCTCTCCC.................................................................................................................................. 20 2 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................TCACGCTTTTGCTCTCTCCC.................................................................................................................................. 20 2 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................TCACACTTTTGCTCTCTCCT.................................................................................................................................. 20 3 20 0.15 3 0 0 0 0 0 3 0 0 0 0 0 0
............................................................................................................................................................TCAGTCTTTTTCTCTCTCCTGCT............................................................................................................................... 23 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TCAGTCTTTTACTCTCTGCTG................................................................................................................................. 21 3 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................TTTTCAACTCTCTCTCTCTC........................................................................................................................................................ 20 1 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................TCTCACATTCTCTATCTATCT............................................................................. 21 2 11 0.09 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................TCACTCTTTTGCTCTCTCCT.................................................................................................................................. 20 2 11 0.09 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................TCAGTCTTTTGCTCTATCCC.................................................................................................................................. 20 3 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................TCTCTCTCTCTCTCTCTCTC.............................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................................AACTCTCTCTCTCTCTCTC.................................................................................................................................................... 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................TGGAACTCGGCATCAAACC............................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AACGACCGGACAGACTGGCTAAAGAAATGGTTATCGTTTCTAAAACAAGCCACTCAAGGTGCGTTTCTCAGACTCTGTTCGAGTGCAGATGTAAAACATTCTGAGCTCATAGGGGCAGATGTAGATGTACGGTGAAAAATTGAGAGAGAGAGAGAGAGTGAGAAAATGAGAGAGGGCGAGCGAGAGCGCGAGAGAGAGAGAGAGAGAGAGAGAGTGAGAGATAGATAGATAGATACAGATGAGCAAATGGGTTGTCGCAACTTGCGCCGTAGTTTCGACCACTAAAAGATAAATGCATATTCAGCT
**************************************************..............................................................(((....)))...................................................................********************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060668
160x9_males_carcasses_total
 GSM1528803
follicle cells		 M027
male body		 SRR060686
Argx9_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 V047
embryo
 SRR060658
140_ovaries_total
 SRR060667
160_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060681
Argx9_testes_total
........................................................................................................................................................................................................................................................GGGTTGTCGCCACTTCCACC...................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................TAGCGCCCTAGTTTCGAACA......................... 20 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
...............TGGCTAAAGAAGTGCTTAGC............................................................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................CCGGCCACTCAAGGTGCC................................................................................................................................................................................................................................................... 18 3 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0 0
..................GTAAAGAAATGGTCATCG.............................................................................................................................................................................................................................................................................. 18 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................CTGTGCGAGTGAAGATGT...................................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................AGACTCGGTTCGAGTGCATG......................................................................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................ATGGGGCCACATGTAGAT.................................................................................................................................................................................... 18 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................AGAGAGAGAGAGAGTGAGAAA............................................................................................................................................. 21 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................GCGAGAGAGAGAGAGAGAGAGAG................................................................................................ 23 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................AATGGGTTGTCGCACGTTT.......................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................AGAGCGCGAGAGAGGGAG.......................................................................................................... 18 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CGCGAGAGAGAGAGAGAGAG.................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................GCGCGAGAGAGAGAGAGAGAGA................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................TGACAAATTGAGAGAAAG............................................................................................................................................................ 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12726:2027543-2027848 - dvi_1984 TTGCTGGCCTGTCTGACCGATTTCTTTACCAATAGCAAAGATTTTGTTCGGTGAGTTCCAC--------------------GCAAA--------------------------------------GAG--------TCTGAGACAAGCT---------------------CACG-------------TCTACATTTTGTAAGACTCGAGTATCCCCGTC--------------------------------------------------TA-CATCTACATGCCAC-----------------------------------------------------------------------------TTT------TT-------------AACTCTCTCTCTCTCTCTCACTCTTTTACTCTCTCCC--------------------------------------GCTCGCTCTCGCGCTCTCTCTCTC--------------------------------------------------TCTCT-----------------CTCTCTCTCACTCTCTATCTATCTA--------------------TCTATGTCTACTCGTTTACCC-------AACAGCGTTGAACGC----GGC-A-TCAAAGCTG-------------GTGATTTTCTATTTACGTAT------------AAGTCGA
droMoj3 scaffold_6473:6445011-6445299 + TTGCTGGCCTGTCTGGTCGATTTCTTTACCAACAGCAAAGATTTTGTTCGGTGAGTTTTGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATGTTGTGTTCGACGCACGTTTCCCAACTGCTGCGATCTCC-------CTGGATAC-GC-------------------------------------CTTTATCTCTCCCCC----CCACACACA-----CACTGT----C--------------------TCGT------------TCCCTCTCTTCCTCTCTC----------------------------------------TTTCTCTCTTTGTCTGTCACTGTCTTAC----------------TC----------G------------------C-------T----CA----------CTAT--CT----------CTCTCTATGTCTATTCGTATACCC-------AACAGCGTTGAACGC----GGA-A-TCAAAGCTG-------------GTGATTTTCTATTTACGTAT------------AAGTCGA
droGri2 scaffold_15203:994365-994725 - TTGCTGGCCTGTCTAACCGATTTCTTTACAAACAGCGATGAATTTGTTCGGTGAGTTCGGAATTCTT-CAAAA------------------------------------------------------TATGTTGA------ACAAATGTGGGCATAGCCAAAGTTTCATATAGCCAAAACTATAATTCTGT-------------------TCTTTGCCAATGACT---------------------------------------CTATTTCCATCTACTTTGTACTAT-------TTATATTT-GT-------------------------------------ATTTTTATCTCCCTC----GCGCTCTCT-----CTCTCT----C--------------------TCTC------------TCTTT----------------------CTC--TCACTCTGTCTCTCTCTCTCTCTCTCTCTC--------------------------------------------------TCTCT-----------------CTCGCTCTCGTTCTTTATGTA---C--T--CT----------CTGTCTGTATATAATTGTAAACTC-------AACAGCGTTGAACGC----GGC-A-TCAAAGCTG-------------GTGATTTTTTATTTACCTAT------------AAGTCGA
droWil2 scf2_1100000004909:5358889-5359105 - TTGCTGGCCTGTCTGGTTGATTTCTTTACCAATAGCAATGAATTTGTGCGGTAAGTATGAATATTTG-AAAGA--------------------------------------------------------------------------T---------------------ATAA-------------TCTATACT------------------------------------------------------------------------------------------------------------------------------ATGCTATGCTATCGCTAGTCTATCTTAA----------TCTATCT--------------------------------------------------------------------------------------------------------------------------------------ATAA----------------TCTATCACACTCACTATACCTTAC-----------TTT------------------------------CGTCTCTC-------------------------TTC-------TTCAGCGTTGAACGC----GGA-A-TTAAAGCTG-------------GTGATTTTCTATTTACCTAT------------AAGTCGA
dp5 XL_group3a:252482-252695 - CTGCTCGCCTGTCTCACGGACTTTTTTAACAACAGCAACGAATTTGTGCGGTAAGTTTCAT--------------------GCCCT--CCATCCTT----------------------------------------------------------------------------------------------------------------------------------------A--TCCTCCGC--A------------------------------------------TTCTATAT----TCCCT-----TCTATCTTCTATGCTCTGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTCTATTCTCTCTTT------------------------------CGTCTCCGTT------TC----TC-CGTTCTCTTTT-------CTCAGCGTGGAACGC----GGC-A-TCAAAGCTG-------------GCGATTTCCTTTTCACGTAC------------AAGTCCA
droPer2 scaffold_39:481070-481283 + CTGCTCGCCTGTCTCACTGACTTTTTTAACAACAGCAACGAATTTGTGCGGTAAGTTTCAT--------------------GCCCT--CCATCCTT----------------------------------------------------------------------------------------------------------------------------------------A--TCCTCCTC--A------------------------------------------GTCCAGAT----TCCCT-----TCTCTCTTCTATGCTCTGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTCTATTCTCTCTTT------------------------------CGTCTCCGTT------TC----TC-CGTTCTCTTTT-------CTCAGCGTGGAACGC----GGC-A-TCAAAGCTG-------------GCGATTTCCTTTTCACGTAC------------AAGTCCA
droAna3 scaffold_13258:1533001-1533205 - TGTCTCTGTCTCTGTCTCTGTCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTCTGTC------------TCTGT----------CTCTGTCTCT--GTCTCTG----------------------------TCT----------CT------------CTGTCTGTCTGTCTCTCTGTCTCTCTGTCTCTCTGT--CTCTCTG-------T----CT----------CTAC--CTCTGTCTCTGT----CT----C------TGTCTCT-------AGCAGTTTTTATAGCCAACAGAGA-CAGAGACAG-------------CCGATTTTCTATCCATTTTTATTGATATATTAAAGATGA
droBip1 scf7180000396741:81190-81370 - AAAAAT---------------------------------------------------------------------------------------------------------------------------------TTTTAAAAATCCG---------------------CCCA-------------TCTATTTTTTGCCTTGCTC----------------------------ACTATCCTGCCAA-----------------------G-CAGCCACA-------------------------------A-----------------------------------------------CCGATCT------CT-------------A--------------------TCAC------------TGCCTCTCTATCTCTCTC----------------------------------------TCTCTCTATCTCTGTCTCGCTGTCTAACTATCTA--------------TGTC--TCTGT-----------------CTCTATCTGACT----GTCTATCTAACC--CA------------------------------------------------------------------------------------------------CTC----TCTAT------------ATATATT
droKik1 scf7180000302258:79543-79690 + TCTCTCTCTCTCTCTACTCTCTCTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTCTC------------TCTCT----------CTCTCTCTCT--CTCTCTC----------------------------TCT----------CT------------CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT--CTCTCTC-------T----CT--C------TCTCTCTCT------CTCT----CT----C------TCTCTCGATCAACCTATCGCT-----------------------------------------------------------------------------TT
droFic1 scf7180000453829:1341146-1341294 + ACTTAGTAGCACCCTCTATGTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACTT-----------------------------------------------TCGGCCCA-----CTCC-----------------------------------------------C----C------------C----------------------------------------------------------------------------------------------C--ATCTTTCCGC--ATCCCTT-------T----CT----------CTAC--TTTCTCCACT------TC----TC-TCT-TTCCCCC-------GACAGCGTTGAACGC----GGC-A-TCAAAGCTG-------------GCGATTTCCTTTTCACCTAC------------AAGTCGA
droEle1 scf7180000490214:1137165-1137346 - TCTTTCTACCACTGTCTGCCTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTCTC------------TCTCT----------CTCTCTCTCT--CTCTCTC----------------------------TCT----------CT------------CTCTCTCTCTCTCTCTCTCTCTCTCGCTTCCTCT----CATGTTT-------T----AA--C------CCTCTCCTTCTGGCTG--------------------TCTCGTC-------TCCAGCTTTAGCCGC----AGT-CATTTTGGCTGCCAAAACTTGTGCACG-------ATTTA---------------------CGT
droRho1 scf7180000779488:477698-477823 + CCATTATCGTGCTCTCTCTCTCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTCCTCTACTCTACTCT--------------------------------------ACTCTCTGTCTCTATATATCTGTC--------------------------------------------------TATAT-----------------CTATCTCTCGTTCGTTATCTATCTA---------------------------TC-CA--------------------------------------------------------------------CTGCTCTTTATCTCC------------GAAGCGT
droBia1 scf7180000299393:9065-9207 + TCTCTCTCTCTCTCTCTCTCTCTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTCTC------------TCTCT----------CTCTCTCTCT--CTCTCTC----------------------------TCT----------CT------------CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT--CTCTCTC-------T----CT--C------TCTCTCTCTCTCTCTGT------CT----CT-CTCTCTTGCTT-------GAC-----------------------------------------------------------------------------------
droTak1 scf7180000415352:1038566-1038722 + GCTTCCGTTCCCAGTGTGTAATTTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCCGTT--------------------------------------------------TC-CCTTTGTTGT--A---G-------TTGTTTATCTTGTCTC-----------------------------------------------TCGCTCTC-----TCTCTCT----CTCA------------------------------------------------------CTCTGTGTGTCTT--TGTCTCTGTTGCTCTCGTGTCCTCTCTGTC--------------------------------------------------TCACT-----------------CCCTGTCTCACTCTG-ATCTG--------------------------------------TT-----------------------------------------------------------------------------------------------TAT
droEug1 scf7180000409528:468396-468668 - CTACTAGCCTGTCTGGTCGATTTCTTTACCAACAGCAGCGAATTTGTGCGGTAGGTTTAGTC--------------------CCC--------------------------------------------------------------------------------------------------------------------------------CTTTTAAAGCCCCATACTAA--CTCCCCACCTAGATTAGATACTAGACATACGTAG----------TAGAACCTT-------CTGTATCCCTTGTCTT-----------------------------------------------TTGGTCTA-----CTACTCT----ACCC------------------------------------------------------C----------------------------------------------------------------------------------------------CCTGTATCTCTACCTTCCCTTT-------T----CT----------CTAC--TTTCTCCTGT------AC----TT-TCTTTTCCCCC-------GACAGCGTTGAGCGC----GGC-A-TCAAAGCTG-------------GCGATTTCCTTTTCACCTAC------------AAGTCGA
dm3 chrX:18286144-18286417 - CTCCTTGCCTGTCTCGTCGACTTCCTAACCAACAGCAGCGACTTTGTGCGGTAAGTTTGAATCGCTTGAATGGAAAATATTGCTCCTGCTAGCTTTATAAACCTTTTGATCTTGCATTTATC--------------------------------------------------------------------------------------------------------------------------TGAAA-AGAT--------------------------------AT-------ATGTATCT-GTGCCTT-----------------------------------------------CTGGTCTA-----CTCC-----------------------------------------------C----------------------------------------------------------------------------------------------------------TGGTCTATTGCTGCTCTAT--TCCCCTT-------T----CT----------CTAC--TTTCTCCTAC------TC----AT-TCTTTTCACCC-------GACAGCGTTGAGCGC----GGC-A-TCAAAGCTG-------------GCGATTTACTTTTTACCTAC------------AAGTCGA
droSim2 x:17383857-17384124 - CTTCTTGCCTGTCTCGTCGACTTCCTAACCAACAGCAGCGACTTTGTGCGGTAAGTTGGAATCGTTTGAATGGAAAATCTTGCTCC--CTAGCTTTATAAACCTTTTGATCTTGCATTTGTG--------------------------------------------------------------------------------------------------------------------------TGGAA-AGAT--------------------------------AT-------CTGTATCT-GTGACTT-----------------------------------------------CTGGTCTA-----CTGC-----------------------------------------------C----C------------C----------------------------------------------------------------------------------------------GCTGCTGCTCTAT--TCCCCTT-------T----CT----------CTAC--TTTCTCCTAT------TC----AT-TCTTTTCACCC-------GACAGCGTTGAGCGC----GGC-A-TCAAAGCTG-------------GCGATTTACTTTTTACCTAC------------AAGTCGA
droSec2 scaffold_8:595512-595779 - CTTCTTGCCTGTCTCGTCGACTTCCTAACCAACAGCAGCGACTTTGTGCGGTAAGTTGGAATCGTTTGAATGGAAAATCTTGCTCC--CTAGCTTTATAAACCTTTTGATCTTGCATTTGTT--------------------------------------------------------------------------------------------------------------------------TGGAA-AGAG--------------------------------AT-------CTGTATCT-GTGACTT-----------------------------------------------CTGGTCTA-----CTGC-----------------------------------------------C----C------------C----------------------------------------------------------------------------------------------GCTGCTGCTCTAT--TCCCCTT-------T----CT----------CTAC--TTTCTCCTAT------TC----AT-TCTTTTCACCC-------AACAGCGTTGAGCGC----GGC-A-TCAAAGCTG-------------GCGATTTACTTTTTACCTAC------------AAGTCGA
droYak3 X:16914229-16914533 - CTCCTTGCCTGTCTCGTCGACTTCTTAACCAACAGCAGCGATTTTGTGCGGTAAGTTTGGATCGTTT-CATAGAACCTAATGCTCC--TAAGCTCTATAGACCTCATGATCTTGCCTTTATCGGGAGAATGTTGA------AAACC-G------------A--------C--------------------------------TTCGAGTGTCCTTGTT------T-TTGCCTTTCGATTCTGCCTAGAA-A--------------------------------------------------------ACTT-----------------------------------------------CTGATCT------CTGC-----------------------------------------------C----C------------C-----------------------------------------------------------------------------------------------CTGCTGCTCTAT--TCCCCTT-------T----CT----------CTAC--TTTCTCCTCT------TC----AT-TCTTTTCACCC-------GACAGCGTTGAGCGC----GGC-A-TCAAAGCTG-------------GCGATTTACTTTTTACCTAC------------AAGTCGA
droEre2 scaffold_4690:8606644-8606936 - CTTCTTGCCTGTCTCGTCGACTTTCTGACCAACAGCAGCGATTTTGTGCGGTAAGTTTGGATTGTTT-CTTAG---------------------------------------------------------------------------------------------------------------------------------------TGTCCTTGCTGAAGACT-ATGCCTA--GTTCCTACCTAGAA-AGACATTAG-CACGCGTGG----------TAGTACTGT-------CTGTATCT-GCGACTT-----------------------------------------------CTGATCTG-----CTGC-----------------------------------------------C----CCTCTGCCCCTCTG----------------------------------------CCCCTCT-----------------------------------------------GCTGCTCCTCTAT--TCCCCTT-------T----CA----------CTAC--TTTCTCCTCT------TC----GT-TCTTTTCACCC-------GACAGCGTTGAGCGC----GGC-A-TCAAAGCTG-------------GCGATTTACTTTTTACCTAC------------AAGTCGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTGCTGGCCTGTCTGACCGATTTCTTTACCAATAGCAAAGATTTTGTTCGGTGAGTTCCAC--------------------GCAAA--------------------------------------GAG--------TCTGAGACAAGCT---------------------CACG-------------TCTACATTTTGTAAGACTCGAGTATCCCCGTC--------------------------------------------------TA-CATCTACATGCCAC-----------------------------------------------------------------------------TTT------TT-------------AACTCTCTCTCTCTCTCTCACTCTTTTACTCTCTCCC--------------------------------------GCTCGCTCTCGCGCTCTCTCTCTC--------------------------------------------------TCTCT-----------------CTCTCTCTCACTCTCTATCTATCTA--------------------TCTATGTCTACTCGTTTACCC-------AACAGCGTTGAACGC----GGC-A-TCAAAGCTG-------------GTGATTTTCTATTTACGTAT------------AAGTCGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................TTTTGTTCGGTGAGTTCCAC--------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.004000000000000000000000000000000000000000000000000000000000000004
.............TGACCGATTTCTTTACCAATAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
TTGCTGGCCTGTCTGACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
.....GGCCTGTCTGACCGATTTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTCTATTTACGTAT------------AAGTC..2311.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................C--------------------------------------------------TA-CATCTACATGCCAC-----------------------------------------------------------------------------TTT------TT-------------AACTC.....................................................................................................................................................................................................................................................................................................................................2711.001010000000000000000000000000000000000000000000000000000000000000
....TGGCCTGTCTGACCGATTTCTTTACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000000000000000000000000000000000000000000000000000000000000
..........................TACCAATAGCAAAGATTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTG-------------GTGATTTTCTATTTACGTAT------------AAG....2811.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTACTCGTTTACCC-------AACAG.................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTC--------------------------------------------------TCTCT-----------------CTCTCTC........................................................................................................................................................20200.051000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AACTCTCTCTCTCTCTCTC.......................................................................................................................................................................................................................................................................................................................19200.051010000000000000000000000000000000000000000000000000000000000000
droMoj3
TTGCTGGCCTGTCTGGTCGATTTCTTTACCAACAGCAAAGATTTTGTTCGGTGAGTTTTGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATGTTGTGTTCGACGCACGTTTCCCAACTGCTGCGATCTCC-------CTGGATAC-GC-------------------------------------CTTTATCTCTCCCCC----CCACACACA-----CACTGT----C--------------------TCGT------------TCCCTCTCTTCCTCTCTC----------------------------------------TTTCTCTCTTTGTCTGTCACTGTCTTAC----------------TC----------G------------------C-------T----CA----------CTAT--CT----------CTCTCTATGTCTATTCGTATACCC-------AACAGCGTTGAACGC----GGA-A-TCAAAGCTG-------------GTGATTTTCTATTTACGTAT------------AAGTCGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCTATTTACGTAT------------AAGTCG.2211.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTATTTACGTAT------------AAGTC..2011.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTG-------------GTGATTTTCTATTTACG......................2211.001000100
..................GATTTCTTTACCAACAGCAAAGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
droGri2
TTGCTGGCCTGTCTAACCGATTTCTTTACAAACAGCGATGAATTTGTTCGGTGAGTTCGGAATTCTT-CAAAA------------------------------------------------------TATGTTGA------ACAAATGTGGGCATAGCCAAAGTTTCATATAGCCAAAACTATAATTCTGT-------------------TCTTTGCCAATGACT---------------------------------------CTATTTCCATCTACTTTGTACTAT-------TTATATTT-GT-------------------------------------ATTTTTATCTCCCTC----GCGCTCTCT-----CTCTCT----C--------------------TCTC------------TCTTT----------------------CTC--TCACTCTGTCTCTCTCTCTCTCTCTCTCTC--------------------------------------------------TCTCT-----------------CTCGCTCTCGTTCTTTATGTA---C--T--CT----------CTGTCTGTATATAATTGTAAACTC-------AACAGCGTTGAACGC----GGC-A-TCAAAGCTG-------------GTGATTTTTTATTTACCTAT------------AAGTCGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........TGTCTAACCGATTTCTTTAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
TTGCTGGCCTGTCTAACCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
droWil2
TTGCTGGCCTGTCTGGTTGATTTCTTTACCAATAGCAATGAATTTGTGCGGTAAGTATGAATATTTG-AAAGA--------------------------------------------------------------------------T---------------------ATAA-------------TCTATACT------------------------------------------------------------------------------------------------------------------------------ATGCTATGCTATCGCTAGTCTATCTTAA----------TCTATCT--------------------------------------------------------------------------------------------------------------------------------------ATAA----------------TCTATCACACTCACTATACCTTAC-----------TTT------------------------------CGTCTCTC-------------------------TTC-------TTCAGCGTTGAACGC----GGA-A-TTAAAGCTG-------------GTGATTTTCTATTTACCTAT------------AAGTCGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAACGC----GGA-A-TTAAAGCTG-------------GT.....................................2413.00300210
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGC----GGA-A-TTAAAGCTG-------------GT.....................................2212.00200200
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAACGC----GGA-A-TTAAAGCTG-------------GT.....................................2512.00200200
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAACGC----GGA-A-TTAAAGCT.....................................................2111.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTGAACGC----GGA-A-TTAAAGCTG-------------GT.....................................2611.00100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCTG-------------GTGATTTTCTATTTACC......................2511.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTGAACGC----GGA-A-TTAAAGCTG-------------GTG....................................2711.00101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGC----GGA-A-TTAAAGCTG-------------GT.....................................2111.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTCTATTTACCTAT------------AAGT...2211.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTGAACGC----GGA-A-TTAAAGCTG-------------GT.....................................2711.00100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGC----GGA-A-TTAAAGCTG-------------GTG....................................2211.00100100
dp5
CTGCTCGCCTGTCTCACGGACTTTTTTAACAACAGCAACGAATTTGTGCGGTAAGTTTCAT--------------------GCCCT--CCATCCTT----------------------------------------------------------------------------------------------------------------------------------------A--TCCTCCGC--A------------------------------------------TTCTATAT----TCCCT-----TCTATCTTCTATGCTCTGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTCTATTCTCTCTTT------------------------------CGTCTCCGTT------TC----TC-CGTTCTCTTTT-------CTCAGCGTGGAACGC----GGC-A-TCAAAGCTG-------------GCGATTTCCTTTTCACGTAC------------AAGTCCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGC-A-TCAAAGCTG-------------GCGATTTC...............................2111.0010010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACGC----GGC-A-TCAAAGCTG-------------.......................................2011.0010100000000
...........................AACAACAGCAACGAATTTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........................TAACAACAGCAACGAATTTGTGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
droPer2
CTGCTCGCCTGTCTCACTGACTTTTTTAACAACAGCAACGAATTTGTGCGGTAAGTTTCAT--------------------GCCCT--CCATCCTT----------------------------------------------------------------------------------------------------------------------------------------A--TCCTCCTC--A------------------------------------------GTCCAGAT----TCCCT-----TCTCTCTTCTATGCTCTGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTCTATTCTCTCTTT------------------------------CGTCTCCGTT------TC----TC-CGTTCTCTTTT-------CTCAGCGTGGAACGC----GGC-A-TCAAAGCTG-------------GCGATTTCCTTTTCACGTAC------------AAGTCCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TGTCTCTGTCTCTGTCTCTGTCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTCTGTC------------TCTGT----------CTCTGTCTCT--GTCTCTG----------------------------TCT----------CT------------CTGTCTGTCTGTCTCTCTGTCTCTCTGTCTCTCTGT--CTCTCTG-------T----CT----------CTAC--CTCTGTCTCTGT----CT----C------TGTCTCT-------AGCAGTTTTTATAGCCAACAGAGA-CAGAGACAG-------------CCGATTTTCTATCCATTTTTATTGATATATTAAAGATGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTGT--CTCTCTG-------T----CT----------CTAC--CTCTG............................................................................................................................27120.081100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTGT--CTCTCTG-------T----CT----------CTAC--CTCT.............................................................................................................................25160.061100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGT--CTCTCTG-------T----CT----------CTAC--CTCTGTC..........................................................................................................................26160.061010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----C------TGTCTCT-------AGCAGTTTTTATAGCCAAC...................................................................28170.061010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--CTCTCTG-------T----CT----------CTAC--CTCTGTCTCTG......................................................................................................................26170.061010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCAACAGAGA-CAGAGACAG-------------CCGAT..................................27180.061100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTG-------T----CT----------CTAC--CTCTGTCTCT.......................................................................................................................21190.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTG-------T----CT----------CTAC--CTCTGTCTCTGT----CC----...........................................................................................................25190.051010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGTCTCTGT----CT----C------TGTC................................................................................................19200.051010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGAGA-CAGAGACAG-------------C......................................19200.051000010
droBip1
AAAAAT---------------------------------------------------------------------------------------------------------------------------------TTTTAAAAATCCG---------------------CCCA-------------TCTATTTTTTGCCTTGCTC----------------------------ACTATCCTGCCAA-----------------------G-CAGCCACA-------------------------------A-----------------------------------------------CCGATCT------CT-------------A--------------------TCAC------------TGCCTCTCTATCTCTCTC----------------------------------------TCTCTCTATCTCTGTCTCGCTGTCTAACTATCTA--------------TGTC--TCTGT-----------------CTCTATCTGACT----GTCTATCTAACC--CA------------------------------------------------------------------------------------------------CTC----TCTAT------------ATATATTSizeHit CountTotal NormTotal
No Reads
droKik1
TCTCTCTCTCTCTCTACTCTCTCTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTCTC------------TCTCT----------CTCTCTCTCT--CTCTCTC----------------------------TCT----------CT------------CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT--CTCTCTC-------T----CT--C------TCTCTCTCT------CTCT----CT----C------TCTCTCGATCAACCTATCGCT-----------------------------------------------------------------------------TTSizeHit CountTotal NormTotal
No Reads
droFic1
ACTTAGTAGCACCCTCTATGTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACTT-----------------------------------------------TCGGCCCA-----CTCC-----------------------------------------------C----C------------C----------------------------------------------------------------------------------------------C--ATCTTTCCGC--ATCCCTT-------T----CT----------CTAC--TTTCTCCACT------TC----TC-TCT-TTCCCCC-------GACAGCGTTGAACGC----GGC-A-TCAAAGCTG-------------GCGATTTCCTTTTCACCTAC------------AAGTCGASizeHit CountTotal NormTotal
No Reads
droEle1
TCTTTCTACCACTGTCTGCCTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTCTC------------TCTCT----------CTCTCTCTCT--CTCTCTC----------------------------TCT----------CT------------CTCTCTCTCTCTCTCTCTCTCTCTCGCTTCCTCT----CATGTTT-------T----AA--C------CCTCTCCTTCTGGCTG--------------------TCTCGTC-------TCCAGCTTTAGCCGC----AGT-CATTTTGGCTGCCAAAACTTGTGCACG-------ATTTA---------------------CGTSizeHit CountTotal NormTotal
No Reads
droRho1
CCATTATCGTGCTCTCTCTCTCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTCCTCTACTCTACTCT--------------------------------------ACTCTCTGTCTCTATATATCTGTC--------------------------------------------------TATAT-----------------CTATCTCTCGTTCGTTATCTATCTA---------------------------TC-CA--------------------------------------------------------------------CTGCTCTTTATCTCC------------GAAGCGTSizeHit CountTotal NormTotal
No Reads
droBia1
TCTCTCTCTCTCTCTCTCTCTCTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTCTC------------TCTCT----------CTCTCTCTCT--CTCTCTC----------------------------TCT----------CT------------CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT--CTCTCTC-------T----CT--C------TCTCTCTCTCTCTCTGT------CT----CT-CTCTCTTGCTT-------GAC-----------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GCTTCCGTTCCCAGTGTGTAATTTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCCGTT--------------------------------------------------TC-CCTTTGTTGT--A---G-------TTGTTTATCTTGTCTC-----------------------------------------------TCGCTCTC-----TCTCTCT----CTCA------------------------------------------------------CTCTGTGTGTCTT--TGTCTCTGTTGCTCTCGTGTCCTCTCTGTC--------------------------------------------------TCACT-----------------CCCTGTCTCACTCTG-ATCTG--------------------------------------TT-----------------------------------------------------------------------------------------------TATSizeHit CountTotal NormTotal
No Reads
droEug1
CTACTAGCCTGTCTGGTCGATTTCTTTACCAACAGCAGCGAATTTGTGCGGTAGGTTTAGTC--------------------CCC--------------------------------------------------------------------------------------------------------------------------------CTTTTAAAGCCCCATACTAA--CTCCCCACCTAGATTAGATACTAGACATACGTAG----------TAGAACCTT-------CTGTATCCCTTGTCTT-----------------------------------------------TTGGTCTA-----CTACTCT----ACCC------------------------------------------------------C----------------------------------------------------------------------------------------------CCTGTATCTCTACCTTCCCTTT-------T----CT----------CTAC--TTTCTCCTGT------AC----TT-TCTTTTCCCCC-------GACAGCGTTGAGCGC----GGC-A-TCAAAGCTG-------------GCGATTTCCTTTTCACCTAC------------AAGTCGASizeHit CountTotal NormTotal
No Reads
dm3
CTCCTTGCCTGTCTCGTCGACTTCCTAACCAACAGCAGCGACTTTGTGCGGTAAGTTTGAATCGCTTGAATGGAAAATATTGCTCCTGCTAGCTTTATAAACCTTTTGATCTTGCATTTATC--------------------------------------------------------------------------------------------------------------------------TGAAA-AGAT--------------------------------AT-------ATGTATCT-GTGCCTT-----------------------------------------------CTGGTCTA-----CTCC-----------------------------------------------C----------------------------------------------------------------------------------------------------------TGGTCTATTGCTGCTCTAT--TCCCCTT-------T----CT----------CTAC--TTTCTCCTAC------TC----AT-TCTTTTCACCC-------GACAGCGTTGAGCGC----GGC-A-TCAAAGCTG-------------GCGATTTACTTTTTACCTAC------------AAGTCGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....TTGCCTGTCTCGTCGACTTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................TTCCTAACCAACAGCAGCGACTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TCCTAACCAACAGCAGCGACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGC----GGC-A-TCAAAGCTG-------------GC.....................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CTTGCCTGTCTCGTCGACTTCCTAACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TCAAAGCTG-------------GCGATTTACTTTTTAC.......................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TCCTAACCAACAGCAGCGACTTTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-TCTTTTCACCC-------GACAGCGT..............................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
.................CGACTTCCTAACCAACAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AACAGCAGCGACTTTGTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTG-------------GCGATTTACTTTTT.........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACCC-------GACAGCGTTGAGCGC----GGC-...............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCC-------GACAGCGTTGAGCGC----GG.................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
......................TCCTAACCAACAGCAGCGACTTTGTGCGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CTCCTTGCCTGTCTCGTCGACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TCGTCGACTTCCTAACCAACAGCAGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC----GGC-A-TCAAAGCTG-------------GCGAT..................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TGCTAGCTTTATAAACCTTTTGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTTTTTACCTAC------------AAGTCGA2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AACCAACAGCAGCGACTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................TAACCAACAGCAGCGACTTTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GCCTGTCTCGTCGACTTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TCCCCTT-------T----CT----------CTAC--TTTCTCC..........................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-A-TCAAAGCTG-------------GCGATTTACTT............................2311.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CTTGCATTTATC--------------------------------------------------------------------------------------------------------------------------TGAAA-AGAT--------------------------------AT-------ATGTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC------TC----AT-TCTTTTCACCC-------GACAGCGTT.............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCGC----GGC-A-TCAAAGCTG-------------GCG....................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTACCTAC------------AAGTCGA1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------------GCGATTTACTTTTTACCTAC------------AA.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TCTA-----CTCC-----------------------------------------------C----------------------------------------------------------------------------------------------------------TGGTCTATTGCTGCTCT..........................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TGATCTTGCATTTATC--------------------------------------------------------------------------------------------------------------------------TGAAA-AGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CCTTGCCTGTCTCGTCGACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................CTA-----CTCC-----------------------------------------------C----------------------------------------------------------------------------------------------------------TGGTCTATTGCTG..............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTG-------------GCGATTTACTTT...........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----AT-TCTTTTCACCC-------GACAGCGTTGAGC.........................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----AT-TCTTTTCACCC-------GACAGCGTTGAGC.........................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CTTCTTGCCTGTCTCGTCGACTTCCTAACCAACAGCAGCGACTTTGTGCGGTAAGTTGGAATCGTTTGAATGGAAAATCTTGCTCC--CTAGCTTTATAAACCTTTTGATCTTGCATTTGTG--------------------------------------------------------------------------------------------------------------------------TGGAA-AGAT--------------------------------AT-------CTGTATCT-GTGACTT-----------------------------------------------CTGGTCTA-----CTGC-----------------------------------------------C----C------------C----------------------------------------------------------------------------------------------GCTGCTGCTCTAT--TCCCCTT-------T----CT----------CTAC--TTTCTCCTAT------TC----AT-TCTTTTCACCC-------GACAGCGTTGAGCGC----GGC-A-TCAAAGCTG-------------GCGATTTACTTTTTACCTAC------------AAGTCGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.TTCTTGCCTGTCTCGTCGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTTTACCTAC------------AAGTC..1911.00101000000000000000
..TCTTGCCTGTCTCGTCGACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCGC----GGC-A-TCAAAGCTG-------------GCGATT.................................2811.00101000000000000000
.TTCTTGCCTGTCTCGTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
......GCCTGTCTCGTCGACTTCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.............TCGTCGACTTCCTAACCAACAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
droSec2
CTTCTTGCCTGTCTCGTCGACTTCCTAACCAACAGCAGCGACTTTGTGCGGTAAGTTGGAATCGTTTGAATGGAAAATCTTGCTCC--CTAGCTTTATAAACCTTTTGATCTTGCATTTGTT--------------------------------------------------------------------------------------------------------------------------TGGAA-AGAG--------------------------------AT-------CTGTATCT-GTGACTT-----------------------------------------------CTGGTCTA-----CTGC-----------------------------------------------C----C------------C----------------------------------------------------------------------------------------------GCTGCTGCTCTAT--TCCCCTT-------T----CT----------CTAC--TTTCTCCTAT------TC----AT-TCTTTTCACCC-------AACAGCGTTGAGCGC----GGC-A-TCAAAGCTG-------------GCGATTTACTTTTTACCTAC------------AAGTCGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................AACCAACAGCAGCGACTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0021100
...............................ACAGCAGCGACTTTGTGCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
.....................................................................................................................TTGTT--------------------------------------------------------------------------------------------------------------------------TGGAA-AGAG--------------------------------AT-------CTG..................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCGC----GGC-A-TCAAAGC......................................................2011.0011000
........................................................................................................................................................................................................................................................A-AGAG--------------------------------AT-------CTGTATCT-GTGACT......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
......................TCCTAACCAACAGCAGCGACTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001
droYak3
CTCCTTGCCTGTCTCGTCGACTTCTTAACCAACAGCAGCGATTTTGTGCGGTAAGTTTGGATCGTTT-CATAGAACCTAATGCTCC--TAAGCTCTATAGACCTCATGATCTTGCCTTTATCGGGAGAATGTTGA------AAACC-G------------A--------C--------------------------------TTCGAGTGTCCTTGTT------T-TTGCCTTTCGATTCTGCCTAGAA-A--------------------------------------------------------ACTT-----------------------------------------------CTGATCT------CTGC-----------------------------------------------C----C------------C-----------------------------------------------------------------------------------------------CTGCTGCTCTAT--TCCCCTT-------T----CT----------CTAC--TTTCTCCTCT------TC----AT-TCTTTTCACCC-------GACAGCGTTGAGCGC----GGC-A-TCAAAGCTG-------------GCGATTTACTTTTTACCTAC------------AAGTCGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
CTCCTTGCCTGTCTCGTCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
..................GACTTCTTAACCAACAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TCAAAGCTG-------------GCGATTTACTTTTT.........................2411.00101000000000
.............................CAACAGCAGCGATTTTGTGCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
....TTGCCTGTCTCGTCGACTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGC-A-TCAAAGCTG-------------GCGATTT................................2011.00101000000000
.......................................GATTTTGTGCGGTAAGTTTGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTTTTTACCTAC------------AAGTC..2111.00101000000000
droEre2
CTTCTTGCCTGTCTCGTCGACTTTCTGACCAACAGCAGCGATTTTGTGCGGTAAGTTTGGATTGTTT-CTTAG---------------------------------------------------------------------------------------------------------------------------------------TGTCCTTGCTGAAGACT-ATGCCTA--GTTCCTACCTAGAA-AGACATTAG-CACGCGTGG----------TAGTACTGT-------CTGTATCT-GCGACTT-----------------------------------------------CTGATCTG-----CTGC-----------------------------------------------C----CCTCTGCCCCTCTG----------------------------------------CCCCTCT-----------------------------------------------GCTGCTCCTCTAT--TCCCCTT-------T----CA----------CTAC--TTTCTCCTCT------TC----GT-TCTTTTCACCC-------GACAGCGTTGAGCGC----GGC-A-TCAAAGCTG-------------GCGATTTACTTTTTACCTAC------------AAGTCGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................GACCAACAGCAGCGATTTTGTGCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTTTTTACCTAC------------AAGTC..2011.0010001000
......................TTCTGACCAACAGCAGCGATTTTGTGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG-------------GCGATTTACTTTTTACCTAC------------AAGT...2711.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAGCGC----GGC-A-TCAAAGCT.....................................................2211.0010001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCGC----GGC-A-TCAAAGCTG-------------GC.....................................2211.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTG-------------GCGATTTACTTTTTACC......................2211.0011000000

Generated: 05/17/2015 at 04:38 AM