ID:

dvi_19667

 Coordinate:

scaffold_13049:12379211-12379361 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.2 -3.6 -3.6 -3.5

Flybase annnotation

exon [dvir_GLEANR_11927:4]; CDS [Dvir\GJ11919-cds]; intron [Dvir\GJ11919-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATCAATTTAATACATGTTACTCAAATATTCAAAGACTTTTGGAAATGTGTTTAAGCAAATAAAATAATAAGTATGAAGATGATATATGTTTTAAAATATGCCGCATAGGGATTTTGTTTTTCGTAGATCATCCAAATTTTTTTCTAATTATAAACATTTTTAATTTCAATAGCTAATTGCCTTTAAATGTTCTCGTTACAGGTATGGGCAAGAATAAGAAAAGGAATACCAACAGCAGCAAAGCAAAGGGC
***********************************************************************************************************************..((.....((............................(((((...((((.....))))...)))))))....))******************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060666
160_males_carcasses_total
 M047
female body
 SRR060668
160x9_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060669
160x9_females_carcasses_total
 SRR060664
9_males_carcasses_total
 SRR060678
9x140_testes_total
 SRR060671
9x160_males_carcasses_total
 M027
male body		 SRR060665
9_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060659
Argentina_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 V047
embryo
 SRR060676
9xArg_ovaries_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060654
160x9_ovaries_total
 SRR060656
9x160_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060683
160_testes_total
 SRR060688
160_ovaries_total
 SRR1106726
embryo_14-16h
 SRR060660
Argentina_ovaries_total
 GSM1528803
follicle cells		 SRR060685
9xArg_0-2h_embryos_total
 M028
head
 SRR060677
Argx9_ovaries_total
 SRR060657
140_testes_total
 SRR060658
140_ovaries_total
 V053
head
...........................................................................................TAAACTATGCCGACTAGGGAT........................................................................................................................................... 21 3 3 61.33 184 72 23 4 13 11 1 1 4 4 0 4 9 7 4 0 1 5 4 3 1 5 0 0 3 1 0 0 0 0 0 0 2 0 0 1 1 0 0 0
...........................................................................................TAAACTATGCCGACTAGGGA............................................................................................................................................ 20 3 5 20.00 100 50 11 2 4 3 1 0 2 3 0 0 0 2 2 0 1 3 4 4 4 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TAAACTATGCCGACTAGGG............................................................................................................................................. 19 3 19 7.63 145 29 16 11 7 17 5 0 2 1 0 4 0 6 4 4 3 4 6 9 2 3 1 0 6 0 0 0 0 0 0 0 0 0 0 0 0 3 1 1
..........TACATGTTACTCAAATATTCAAAGACT...................................................................................................................................................................................................................... 27 0 1 3.00 3 0 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TTTGGAAATGTGTTTAAGCAAATAAAA........................................................................................................................................................................................... 27 0 1 2.00 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TTAAACTATGCCGACTAGGGA............................................................................................................................................ 21 3 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GTATGGGCAAGAATAAGAAAA............................. 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ATACCAACAGCAGCAAAGCAAAGGGC 26 0 1 2.00 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................ATAAACTATGCCGCCTAGGGA............................................................................................................................................ 21 3 1 2.00 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AAACTATGCCGAATAGGGAT........................................................................................................................................... 20 2 3 1.33 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................ATGTTCTCGTTATAGGTA............................................... 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GCACCAGGTATGGGCAAGAATAAGAAAA............................. 28 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................CAAATATTCAAAGACTTTTGGAAATGTG.......................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AAAAGGAATACCAACAGCAGC............ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GTATGGGCAAGAATAAGAA............................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATAAGAAAAGGAATACCAACA................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................CAGCAGCAAAGCAAAGGG. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AAAATATGCCGACTAGGGAT........................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTCGTAGATCATCCAAATTTT............................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................TATTCAAAGACTTTTGGAAATGTGT......................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CCAGGTATGGGCAAGAATA................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AAACTATGCCGCCTAGGGAT........................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TACATGTTACTCAAATATTCACAGACT...................................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TACCAACAGCAGCAAAGCAAAGGGC 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TAAACTATGCCGCCTAGGGATC.......................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AATACCAACAGCAGCAAAGCA...... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TACATGTTACTCAAATATTCAAAGACTTT.................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AATAAGAAAAGGAATACCAAC.................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................TTGGAAATGTGTTTAAGCAAATAAAA........................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TGGAAATGTGTTTAAGCAAATAAAAT.......................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AATTGCCTTTAAATGTTCTCG........................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TATGCCGCATAGGGATTTTGTTTTTC................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TTTGGAAATGTGTTTAAGCAAATAAA............................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ATACCTACAGCAGCAAAGCAAAGGGC 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AACTATGCCGCCTAGGGATC.......................................................................................................................................... 20 3 2 1.00 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGGTATGGGCAAGAATAAGAAAAG............................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATAAGAAAAGGAATACCAACAGCAGC............ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......TAATACATGTTACTCAAATATTCAAAGACT...................................................................................................................................................................................................................... 30 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................TAAACTATGCCGCCTAGGGA............................................................................................................................................ 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TACATGTTACTCAAATATTCAAAGACTT..................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AAGGAATACCAACAGCAGC............ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GCAAGAATAAGAAAAGGAATAC...................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................TATTCAAAGACTTTTGGAAATGTGTT........................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AAACTATGCCGCCTAGGGATC.......................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AGGAATACCAACAGCAGCAA.......... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TTAAACTATGCCGACTAGGG............................................................................................................................................. 20 3 3 0.67 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AAACTATGCCGAATAGGGATC.......................................................................................................................................... 21 3 3 0.67 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................ATAAACTATGCCGAATAGGGAT........................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................ATAAAATATGCCGACTAGGGAT........................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AACGGAATCCCAACAGCAGC............ 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................AAACTATGCCGCCTAGGG............................................................................................................................................. 18 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AAACTATGCCGACTAGGGATT.......................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................AACTATGCCGCCTAGGGAT........................................................................................................................................... 19 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AACTATGCCGAATAGGGAT........................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................ATAAAATATGCCGACTAGGGA............................................................................................................................................ 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AAACTATGCCGGCTAGGGAT........................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AACTATGCCGACTAGGGATT.......................................................................................................................................... 20 3 12 0.17 2 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AACTATGCCGTCTAGGGAT........................................................................................................................................... 19 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AACTATGCCGGCTAGGGAT........................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GGAAAAGGAATACCAAGAGG............... 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................GAAGTGTGTTTAAGAAAA................................................................................................................................................................................................ 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................ATACATGTTTTAAGATACGC...................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAGTTAAATTATGTACAATGAGTTTATAAGTTTCTGAAAACCTTTACACAAATTCGTTTATTTTATTATTCATACTTCTACTATATACAAAATTTTATACGGCGTATCCCTAAAACAAAAAGCATCTAGTAGGTTTAAAAAAAGATTAATATTTGTAAAAATTAAAGTTATCGATTAACGGAAATTTACAAGAGCAATGTCCATACCCGTTCTTATTCTTTTCCTTATGGTTGTCGTCGTTTCGTTTCCCG
********************************************************..((.....((............................(((((...((((.....))))...)))))))....))*********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060673
9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060666
160_males_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060678
9x140_testes_total
 SRR060689
160x9_testes_total
 SRR1106729
mixed whole adult body
 V047
embryo
...................................................................................................CGGCGTATCCCTAAAATAAAA................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................TCCTTATGGTTGTCGTCGTTT......... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CACCCGTTCTTATTCTTTTCCT.......................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTACAAGAGCAATGTCCATAT............................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATGTCCATACCCGTTCTTATT.................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................TTACACGAGTTCGTTTATTTT........................................................................................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................AGATTAATGGTTGTAAAAAT......................................................................................... 20 2 4 0.25 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................GGTGTCCGTACCCGTTCTTAT................................... 21 3 8 0.13 1 0 0 0 0 1 0 0 0 0
................................................................................................................................GTAGGTTGAAAAGACGATTAA...................................................................................................... 21 3 17 0.06 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CTTAAGGTTGTCGTCG............ 16 1 20 0.05 1 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................CCTCTGGTTGTCGTCGTTT......... 19 2 20 0.05 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................GGCTGTCCTCGCTTCGTTT.... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0
......................................................CGTTTTTTCTATTATTCAT.................................................................................................................................................................................. 19 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:12379161-12379411 - dvi_19667 ATCAATTTAATACATGTTACTCAAATATT------CAAAGACTTTTGGAAATGTGTTTAA----------------GCAAATAAAATAATAAGTATGAAGATGATATATGTTTTAAAATATGCCGCATAGGGATTTTGTTTTTCGTAGATCATCCAA------------------ATTTTTTTCTAATTATAAACATTTTTAATTTCAATAG--------------CTAATTGCCTTT------------------AAATGTTCTC--------------------------GTTA---------------------------------CAGGTATGGGC---AAGAATAAGAAAAGGAATACCAACA------------------------------------------------------------------------------------------------------------------GCAGCAAA---------------------GCAAAGGG-----------------------------------------------------------------------------------------------------------C
droMoj3 scaffold_6680:15091827-15091966 + TTTTT-T--------------------------------------------------TT----------------------------------------------------------------------------------TTTGTAGAACATTTAAAGTTAT--------------------------------------ATTATGACTG---------------GAAAATGTCCTTCAATATTCTAATT--------T------------------------------------TATT------------TTGTTTCGTATCCTTTGCAGGTGTTGGC---AAAAATAAGAAGAGAAATACCAACG------------------------------------------------------------------------------------------------------------------GCAGCAAA---------------------GCAAAGGG-----------------------------------------------------------------------------------------------------------C
droGri2 scaffold_15110:22960639-22960786 - TTTTT-T--------------------------------------------------TG----------------------------------------------------------------------------------TTTTTGGGTCATCAAA------------------TC-------------------A---------------TTTTTCCGAACAATTAAAAGGC----------------CATCGCTAAT------------------------------------TGCTCTCAATATTTTTGTTCTCTTTATCATCTGCAGGTTCGGGC---AAGAATAAGAAGAAGAATAACAGTC---------------GCA------------------------------------------------------------------------------------------------GCAACAAA---------------------GCCAGGGG-----------------------------------------------------------------------------------------------------------C
droWil2 scf2_1100000004513:5694099-5694188 + ATTAG-A---AAAATGCTTCTCGGATGCTTTTTATGATAAGTTTTAAGTA----------------GTAAGTTGAATCTTGTAAAATGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-----------------------------------------------------------------------------------------------------------------------TATGAAAAG----------------GATATAT-----------------------------------------------------------------------------------------------------------G
dp5 2:6797182-6797250 + AGAAG-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC---AGCAACAGGAACAGCAGCAATATATGCAACAGCAACATATGCA------------------------------------------------------------------------------------------------ACAGCAAA---------------------ATATGCAG-----------------------------------------------------------------------------------------------------------C
droPer2 scaffold_6:4216025-4216074 + GCATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC---AACAACAGCAACAGCAACAACAACA------------------------------------------------------------------------------------------------------------------GCAGCTAC---------------------TCCAACAA-----------------------------------------------------------------------------------------------------------C
droAna3 scaffold_13335:2193625-2193738 + CCGAA-T--------------------------------------------------TC----------------------------------------------------------------------------------TTTACTAA--------------------------------------TTTCTGATAA---------------T------------------TTCTCTCCAAGATTGCAATCAATGCGAAT------------------------------------CACT------------TGCATCTAC----------------TCC---GGCTGCAGATGCAGCAACAACAGCA------------------------------------------------------------------------------------------------------------------GCAGCAAC---------------------AGCAACAA-----------------------------------------------------------------------------------------------------------C
droBip1 scf7180000396728:1298017-1298104 + TTTCA-A------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--------------------------------------------------CAAATTGC----------------CAATGTAAATGTTGCA-----------------------------------------------------------------GCAACCAG---------CAGAAGCGGCAACAACTAAA-----------------------------------------------------------------------------------------TGCG-GC------------CCCACAGCAGCTGT---------------------GTAAACAA-----------------------------------------------------------------------------------------------------------C
droKik1 scf7180000302592:1847134-1847186 - ATTTA-A------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTTGGTATTTCTTAATATTTTTAATTTGGCTA--------------------------------------------------------------------------------------------------------------------------------------CAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCC-----------------------------------------------------------------------------------------------------------T
droFic1 scf7180000454073:1162267-1162339 + TAATT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTT------------------CAATTGCCGC--------------------------TGAC---------------------------------CTGCGCCTGGC---AGCAATATGTC--ACA---GCAGCA------------------------------------------------------------------------------------------------------------------ACAGCAGC---------------------AGCAGCAG-----------------------------------------------------------------------------------------------------------C
droEle1 scf7180000491023:61247-61418 + AACGA-A------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT---------------------------------------------------------------------------------------------------------------------------------------------------------AAAGTTTT---ATTTATAAAAACTAAAATAACTAAAATAATATAAACAAACACAGGATAAAAGTATGGAATAATGTTAACATTTTATATATATGATAGTATTTAGGAGAAAAATTAAAGACTATATGTATGAAAAGAAATAAATCTTTCAACTTTTCT---------------------TC--AAAT-----------------------------------------------------------------------------------------------------------T
droRho1 scf7180000778257:87985-88068 + AGCTT-C-------------------------TTTGAT---TTCGGGGCT----------------GCTAATTGAT--------------------------------------------------------------------------------------------------------------------------TTTT--------------------------------------------------------ATG---------------------------------------------------------------------------CGCC---AGGCACAGCGGCAACAGCAACAACA------------------------------------------------------------------------------------------------------------------GCAGCAAC---------------------AGCAGCAA-----------------------------------------------------------------------------------------------------------C
droBia1 scf7180000302188:326311-326420 + TTTCT-T--------------------------------------------------TTAG---------------------------------------------------------------------------------CTAAAAAATATTTTAAATTAAATTGATAAGCTCA----------------CATATTTTA--------------------------------------------------TATTTTAGGGTG--------------------------------------------------------------------GCGGTTATC---AGCAACAACC------------AAG-----------------------------------------------------------------------------------------GCAG-AC------------------ACCTCAGC---------------------AGCAGCAG-----------------------------------------------------------------------------------------------------------C
droTak1 scf7180000411269:58586-58751 - ACAAT-T--------------------------------------------------TA----------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGAATT---ACTAAACCGTCCAATTTGAACACTT------------------------------------------------------------------------------------------------------------------GTGACCCT---------------------TATGACAATTATAAAATAATAAATATAGTTGTTTAATATTGTTTAAACCAAACCATATAATAATTTTGTTTCCTGATTGGTAATAAATATTTTTTTATAAATCCAAAAAATTATAA
droEug1 scf7180000409466:3033565-3033737 - TGTGC-T--------------------------------------------------TAAGTAACTGCAAA--------------TTAACAAGAATAAAAATCAAATAAATT--------------------------------------------------------------------TCAACTTTAATAAGTGTTCAGTGTTTAGCCA-----------------------------------------ATATAAA-ATCGCATAACTAACTAACTAGTCAATGTTCTAAATA---------------------------------AAAAATCGATC---AAGAA-A---AAGGGAAAACCAAAG------------------------------------------------------------------------------------------GCA---------------------GACAAGGC---------------------TCAGACAG-----------------------------------------------------------------------------------------------------------T
dm3 chr2R:9926367-9926415 + TAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGC---AACAACACGAACAACAATGGCAACA------------------------------------------------------------------------------------------------------------------GCACCAAC---------------------AACAACGG-----------------------------------------------------------------------------------------------------------C
droSim2 x:11981174-11981220 - GTTGC-A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGTCGGC---AGCAGCAACA---------------------------------------------------------------------------------------------------------------------------------AAAGCAACAGCAGCA----------------ACACGT-----------------------------------------------------------------------------------------------------------T
droSec2 scaffold_21:379507-379553 - GTTGC-A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGTCGGC---AGCAGCAACA---------------------------------------------------------------------------------------------------------------------------------AAAGCAACAGCAGCA----------------ACACGT-----------------------------------------------------------------------------------------------------------T
droYak3 3L:8359651-8359709 - TCATC-A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGCAGCAAC---AACAGCAGCAGCAGCAGCAACAACA------------------------------------------------------------------------------------------------------------------GCAGCAAC---------------------AACAACAG-----------------------------------------------------------------------------------------------------------C
droEre2 scaffold_4845:14239450-14239549 - TAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAAATGCGTCT------------------AAATGTGCCA--------------------------GCCA---------------------------------CTGCTGCTAGTTGTAGTAACAGCAGCAGCAACAACAACA------------------------------------------------------------------------------------------------------------------GCAGCAG------CAGTGTGTTCCTCAATGTGTCCGG-----------------------------------------------------------------------------------------------------------C

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATCAATTTAATACATGTTACTCAAATATT------CAAAGACTTTTGGAAATGTGTTTAA----------------GCAAATAAAATAATAAGTATGAAGATGATATATGTTTTAAAATATGCCGCATAGGGATTTTGTTTTTCGTAGATCATCCAA------------------ATTTTTTTCTAATTATAAACATTTTTAATTTCAATAG--------------CTAATTGCCTTT------------------AAATGTTCTC--------------------------GTTA---------------------------------CAGGTATGGGC---AAGAATAAGAAAAGGAATACCAACA------------------------------------------------------------------------------------------------------------------GCAGCAAA---------------------GCAAAGGG-----------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........TACATGTTACTCAAATATT------CAAAGACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.003000000000000000000000000010020000000000000000000000000000000000
...........................................TTTGGAAATGTGTTTAA----------------GCAAATAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000000000000000000000000011000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................GTATGGGC---AAGAATAAGAAAA...............................................................................................................................................................................................................................................................................2112.002000000000101000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................ATACCAACA------------------------------------------------------------------------------------------------------------------GCAGCAAA---------------------GCAAAGGG-----------------------------------------------------------------------------------------------------------C2612.002000000000000000000000010000000000100000000000000000000000000000
.....................CAAATATT------CAAAGACTTTTGGAAATGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000100000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................AAAAGGAATACCAACA------------------------------------------------------------------------------------------------------------------GCAGC............................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................GTATGGGC---AAGAATAAGAA.................................................................................................................................................................................................................................................................................1911.001000000000100000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................ATAAGAAAAGGAATACCAACA------------------------------------------------------------------------------------------------------------------.................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................CA------------------------------------------------------------------------------------------------------------------GCAGCAAA---------------------GCAAAGGG-----------------------------------------------------------------------------------------------------------.1811.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................TTCGTAGATCATCCAA------------------ATTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.........................TATT------CAAAGACTTTTGGAAATGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TACCAACA------------------------------------------------------------------------------------------------------------------GCAGCAAA---------------------GCAAAGGG-----------------------------------------------------------------------------------------------------------C2511.001000000000000000000000000010000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................AATACCAACA------------------------------------------------------------------------------------------------------------------GCAGCAAA---------------------GCA.................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..........TACATGTTACTCAAATATT------CAAAGACTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................AATAAGAAAAGGAATACCAAC....................................................................................................................................................................................................................................................................2111.001000000000001000000000000000000000000000000000000000000000000000
............................................TTGGAAATGTGTTTAA----------------GCAAATAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000010000000000000000000000000000000000000000000
.............................................TGGAAATGTGTTTAA----------------GCAAATAAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................AATTGCCTTT------------------AAATGTTCTC--------------------------G..............................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TATGCCGCATAGGGATTTTGTTTTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
...........................................TTTGGAAATGTGTTTAA----------------GCAAATAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000100000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................AGGTATGGGC---AAGAATAAGAAAAG..............................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................................................................................................................................................................................ATAAGAAAAGGAATACCAACA------------------------------------------------------------------------------------------------------------------GCAGC............................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.......TAATACATGTTACTCAAATATT------CAAAGACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.001000000000000000000000000000000000000000000000000000000100000000
..........TACATGTTACTCAAATATT------CAAAGACTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................AAGGAATACCAACA------------------------------------------------------------------------------------------------------------------GCAGC............................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................GC---AAGAATAAGAAAAGGAATAC........................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
.........................TATT------CAAAGACTTTTGGAAATGTGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................AGGAATACCAACA------------------------------------------------------------------------------------------------------------------GCAGCAA..........................................................................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
droMoj3
TTTTT-T--------------------------------------------------TT----------------------------------------------------------------------------------TTTGTAGAACATTTAAAGTTAT--------------------------------------ATTATGACTG---------------GAAAATGTCCTTCAATATTCTAATT--------T------------------------------------TATT------------TTGTTTCGTATCCTTTGCAGGTGTTGGC---AAAAATAAGAAGAGAAATACCAACG------------------------------------------------------------------------------------------------------------------GCAGCAAA---------------------GCAAAGGG-----------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................ATAAGAAGAGAAATACCAACG------------------------------------------------------------------------------------------------------------------GCAGC............................................................................................................................................2611.001000001
..........................................................................................................................................................................................................................................................................................................TT------------TTGTTTCGTATCCTTTGCAG.......................................................................................................................................................................................................................................................................................................2211.001100000
..........................................................................................................................................................................................................................................................................................................................................AGGTGTTGGC---AAAAATAAGA..................................................................................................................................................................................................................................................................................2011.001000001
.....................................................................................................................................................................................................................................................................................................................................................................AAATACCAACG------------------------------------------------------------------------------------------------------------------GCAGCAAA---------------------....................................................................................................................1911.001100000
....................................................................................................................................................................................................................................................................................................................................................................GAAATACCAACG------------------------------------------------------------------------------------------------------------------GCAGCAAA---------------------GC..................................................................................................................2211.001000001
..................................................................................................................................................................................................................................................................................................................................................................GAGAAATACCAACG------------------------------------------------------------------------------------------------------------------GCAGC............................................................................................................................................1911.001100000
............................................................................................................................................................................................................................................................................................................................................................................AACG------------------------------------------------------------------------------------------------------------------GCAGCAAA---------------------GCAAAG..............................................................................................................1811.001100000
droGri2
TTTTT-T--------------------------------------------------TG----------------------------------------------------------------------------------TTTTTGGGTCATCAAA------------------TC-------------------A---------------TTTTTCCGAACAATTAAAAGGC----------------CATCGCTAAT------------------------------------TGCTCTCAATATTTTTGTTCTCTTTATCATCTGCAGGTTCGGGC---AAGAATAAGAAGAAGAATAACAGTC---------------GCA------------------------------------------------------------------------------------------------GCAACAAA---------------------GCCAGGGG-----------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................ACAGTC---------------GCA------------------------------------------------------------------------------------------------GCAACAAA---------------------GCCAGGGG-----------------------------------------------------------------------------------------------------------C2611.00110
droWil2
ATTAG-A---AAAATGCTTCTCGGATGCTTTTTATGATAAGTTTTAAGTA----------------GTAAGTTGAATCTTGTAAAATGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-----------------------------------------------------------------------------------------------------------------------TATGAAAAG----------------GATATAT-----------------------------------------------------------------------------------------------------------GSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
AGAAG-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC---AGCAACAGGAACAGCAGCAATATATGCAACAGCAACATATGCA------------------------------------------------------------------------------------------------ACAGCAAA---------------------ATATGCAG-----------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................AGCAACAGGAACAGCAGCA.........................................................................................................................................................................................................................................................................1950.2010100000000
droPer2
GCATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC---AACAACAGCAACAGCAACAACAACA------------------------------------------------------------------------------------------------------------------GCAGCTAC---------------------TCCAACAA-----------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAACA------------------------------------------------------------------------------------------------------------------GCAGC............................................................................................................................................19200.051100000
.......................................................................................................................................................................................................................................................................................................................................................AACAACAGCAACAGCAACA.........................................................................................................................................................................................................................................................................19200.051010000
droAna3
CCGAA-T--------------------------------------------------TC----------------------------------------------------------------------------------TTTACTAA--------------------------------------TTTCTGATAA---------------T------------------TTCTCTCCAAGATTGCAATCAATGCGAAT------------------------------------CACT------------TGCATCTAC----------------TCC---GGCTGCAGATGCAGCAACAACAGCA------------------------------------------------------------------------------------------------------------------GCAGCAAC---------------------AGCAACAA-----------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................CTCCAAGATTGCAATCAATGC...................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
....................................................................................................................................................................................................................................................TGCAATCAATGCGAAT------------------------------------CACT------------TG.........................................................................................................................................................................................................................................................................................................................2211.001100000
........................................................................................................................................................................................................................................................................................................................................................................CAACAGCA------------------------------------------------------------------------------------------------------------------GCAGCAAC---------------------AGCAACA.............................................................................................................23200.306030003
......................................................................................................................................................................................................................................................................................................................................................................AACAACAGCA------------------------------------------------------------------------------------------------------------------GCAGCAAC---------------------AGC.................................................................................................................21200.204040000
..........................................................................................................................................................................................................................................................................................................................................................................ACAGCA------------------------------------------------------------------------------------------------------------------GCAGCAAC---------------------AGCAACA.............................................................................................................21200.153000003
...........................................................................................................................................................................................................................................................................................................................................................................CAGCA------------------------------------------------------------------------------------------------------------------GCAGCAAC---------------------AGCAAC..............................................................................................................19200.102000002
......................................................................................................................................................................................................................................................................................................................................................................AACAACAGCA------------------------------------------------------------------------------------------------------------------GCAGCAAC---------------------AGCAAC..............................................................................................................24200.102000002
......................................................................................................................................................................................................................................................................................................................................................................AACAACAGCA------------------------------------------------------------------------------------------------------------------GCAGCAAC---------------------A...................................................................................................................19200.102000002
...................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCA------------------------------------------------------------------------------------------------------------------GCAGCAAC---------------------....................................................................................................................21200.051000001
.................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAGCA------------------------------------------------------------------------------------------------------------------GCAGC............................................................................................................................................20200.051100000
......................................................................................................................................................................................................................................................................................................................................................................AACAACAGCA------------------------------------------------------------------------------------------------------------------GCAGCAAC---------------------AG..................................................................................................................20200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................ACAACAGCA------------------------------------------------------------------------------------------------------------------GCAGCAAC---------------------A...................................................................................................................18200.051010000
...........................................................................................................................................................................................................................................................................................................................................................................CAGCA------------------------------------------------------------------------------------------------------------------GCAGCAAC---------------------AGCAACAA-----------------------------------------------------------------------------------------------------------C22200.051010000
......................................................................................................................................................................................................................................................................................................................................................................AACAACAGCA------------------------------------------------------------------------------------------------------------------GCAGCAAC---------------------AGCA................................................................................................................22200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................AACAGCA------------------------------------------------------------------------------------------------------------------GCAGCAAC---------------------AGCAACA.............................................................................................................22200.051010000
.................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAGCA------------------------------------------------------------------------------------------------------------------GCAGCA...........................................................................................................................................21200.051010000
droBip1
TTTCA-A------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--------------------------------------------------CAAATTGC----------------CAATGTAAATGTTGCA-----------------------------------------------------------------GCAACCAG---------CAGAAGCGGCAACAACTAAA-----------------------------------------------------------------------------------------TGCG-GC------------CCCACAGCAGCTGT---------------------GTAAACAA-----------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droKik1
ATTTA-A------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTTGGTATTTCTTAATATTTTTAATTTGGCTA--------------------------------------------------------------------------------------------------------------------------------------CAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCC-----------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droFic1
TAATT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTT------------------CAATTGCCGC--------------------------TGAC---------------------------------CTGCGCCTGGC---AGCAATATGTC--ACA---GCAGCA------------------------------------------------------------------------------------------------------------------ACAGCAGC---------------------AGCAGCAG-----------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droEle1
AACGA-A------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT---------------------------------------------------------------------------------------------------------------------------------------------------------AAAGTTTT---ATTTATAAAAACTAAAATAACTAAAATAATATAAACAAACACAGGATAAAAGTATGGAATAATGTTAACATTTTATATATATGATAGTATTTAGGAGAAAAATTAAAGACTATATGTATGAAAAGAAATAAATCTTTCAACTTTTCT---------------------TC--AAAT-----------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droRho1
AGCTT-C-------------------------TTTGAT---TTCGGGGCT----------------GCTAATTGAT--------------------------------------------------------------------------------------------------------------------------TTTT--------------------------------------------------------ATG---------------------------------------------------------------------------CGCC---AGGCACAGCGGCAACAGCAACAACA------------------------------------------------------------------------------------------------------------------GCAGCAAC---------------------AGCAGCAA-----------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droBia1
TTTCT-T--------------------------------------------------TTAG---------------------------------------------------------------------------------CTAAAAAATATTTTAAATTAAATTGATAAGCTCA----------------CATATTTTA--------------------------------------------------TATTTTAGGGTG--------------------------------------------------------------------GCGGTTATC---AGCAACAACC------------AAG-----------------------------------------------------------------------------------------GCAG-AC------------------ACCTCAGC---------------------AGCAGCAG-----------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droTak1
ACAAT-T--------------------------------------------------TA----------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGAATT---ACTAAACCGTCCAATTTGAACACTT------------------------------------------------------------------------------------------------------------------GTGACCCT---------------------TATGACAATTATAAAATAATAAATATAGTTGTTTAATATTGTTTAAACCAAACCATATAATAATTTTGTTTCCTGATTGGTAATAAATATTTTTTTATAAATCCAAAAAATTATAASizeHit CountTotal NormTotal
No Reads
droEug1
TGTGC-T--------------------------------------------------TAAGTAACTGCAAA--------------TTAACAAGAATAAAAATCAAATAAATT--------------------------------------------------------------------TCAACTTTAATAAGTGTTCAGTGTTTAGCCA-----------------------------------------ATATAAA-ATCGCATAACTAACTAACTAGTCAATGTTCTAAATA---------------------------------AAAAATCGATC---AAGAA-A---AAGGGAAAACCAAAG------------------------------------------------------------------------------------------GCA---------------------GACAAGGC---------------------TCAGACAG-----------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
dm3
TAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGC---AACAACACGAACAACAATGGCAACA------------------------------------------------------------------------------------------------------------------GCACCAAC---------------------AACAACGG-----------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................ACGAACAACAATGGCAACA------------------------------------------------------------------------------------------------------------------GCACCAAC---------------------....................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................ACACGAACAACAATGGCAACA------------------------------------------------------------------------------------------------------------------GCAC.............................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGC---AACAACACGAACAACAATGGCA......................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CAATGGCAACA------------------------------------------------------------------------------------------------------------------GCACCAAC---------------------AACA................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................GCAACA------------------------------------------------------------------------------------------------------------------GCACCAAC---------------------AACAACGG-----------------------------------------------------------------------------------------------------------C2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................ACACGAACAACAATGGCAACA------------------------------------------------------------------------------------------------------------------GCA..............................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................CAACACGAACAACAATGGCAACA------------------------------------------------------------------------------------------------------------------GCA..............................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................ACACGAACAACAATGGCAACA------------------------------------------------------------------------------------------------------------------GCACCAAC---------------------....................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................CGAACAACAATGGCAACA------------------------------------------------------------------------------------------------------------------GCACCA...........................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................AATGGCAACA------------------------------------------------------------------------------------------------------------------GCACCAAC---------------------AACAACGG-----------------------------------------------------------------------------------------------------------C2711.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................AACAATGGCAACA------------------------------------------------------------------------------------------------------------------GCACCAAC---------------------AAC.................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................AACAACAATGGCAACA------------------------------------------------------------------------------------------------------------------GCA..............................................................................................................................................19180.72130000000000000000000000000000000000000001000000010502000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000101000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................ACAACAATGGCAACA------------------------------------------------------------------------------------------------------------------GCA..............................................................................................................................................18190.63120000000000000000000000000000000000000101000000040000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000111000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................AACAACAATGGCAACA------------------------------------------------------------------------------------------------------------------GC...............................................................................................................................................18180.1730000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................AACAACAATGGCAACA------------------------------------------------------------------------------------------------------------------GCT..............................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GTTGC-A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGTCGGC---AGCAGCAACA---------------------------------------------------------------------------------------------------------------------------------AAAGCAACAGCAGCA----------------ACACGT-----------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..TGC-A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGTCGGC---AGCAGC......................................................................................................................................................................................................................................................................................1911.00101000000000000000
....C-A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGTCGGC---AGCAGCAACA---------------------------------------------------------------------------------------------------------------------------------AAAGC............................................................................................................................................2611.00101000000000000000
..TGC-A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGTCGGC---AGCAGCAACA---------------------------------------------------------------------------------------------------------------------------------AAAG.............................................................................................................................................2711.00100000010000000000
...GC-A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGTCGGC---AGCAGCAACA---------------------------------------------------------------------------------------------------------------------------------AAAG.............................................................................................................................................2611.00100000001000000000
...GC-A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGTCGGC---AGCAGC......................................................................................................................................................................................................................................................................................1811.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................ACTGTCGGC---AGCAGCAACA---------------------------------------------------------------------------------------------------------------------------------G................................................................................................................................................2011.00100000000001000000
droSec2
GTTGC-A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGTCGGC---AGCAGCAACA---------------------------------------------------------------------------------------------------------------------------------AAAGCAACAGCAGCA----------------ACACGT-----------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................................................AACA---------------------------------------------------------------------------------------------------------------------------------AAAGCAACAGCAGC...................................................................................................................................1820.5010010
...............................................................................................................................................................................................................................................................................................................................................................CA---------------------------------------------------------------------------------------------------------------------------------AAAGCAACAGCAGCA----------------AC................................................................................................................1940.2510010
droYak3
TCATC-A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGCAGCAAC---AACAGCAGCAGCAGCAGCAACAACA------------------------------------------------------------------------------------------------------------------GCAGCAAC---------------------AACAACAG-----------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................AAC---AACAGCAGCAGCAGCA............................................................................................................................................................................................................................................................................19200.15303000000000
.................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAACA------------------------------------------------------------------------------------------------------------------GCAGCA...........................................................................................................................................21200.10202000000000
.......................................................................................................................................................................................................................................................................................................................................................................GCAACAACA------------------------------------------------------------------------------------------------------------------GCAGCAAC---------------------AACAA...............................................................................................................22140.07101000000000
.............................................................................................................................................................................................................................................................................................................................................................................ACA------------------------------------------------------------------------------------------------------------------GCAGCAAC---------------------AACAACAG-----------------------------------------------------------------------------------------------------------C20200.05100100000000
........................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCAGCAACAACA------------------------------------------------------------------------------------------------------------------GC...............................................................................................................................................26200.05100100000000
..............................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAACA------------------------------------------------------------------------------------------------------------------GCAG.............................................................................................................................................22200.05101000000000
...............................................................................................................................................................................................................................................................................................................................................GCAAC---AACAGCAGCAGCAGCAGC..........................................................................................................................................................................................................................................................................23200.05101000000000
droEre2
TAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAAATGCGTCT------------------AAATGTGCCA--------------------------GCCA---------------------------------CTGCTGCTAGTTGTAGTAACAGCAGCAGCAACAACAACA------------------------------------------------------------------------------------------------------------------GCAGCAG------CAGTGTGTTCCTCAATGTGTCCGG-----------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAACAACA------------------------------------------------------------------------------------------------------------------GCAGCA...........................................................................................................................................24200.0511000000
.....................................................................................................................................................................................................................................................................................................................................................................CAACAACAACA------------------------------------------------------------------------------------------------------------------GCAGCAG------CA..................................................................................................................................20200.0510100000
....................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACA------------------------------------------------------------------------------------------------------------------GCAGCAG------C...................................................................................................................................20200.0511000000

Generated: 05/16/2015 at 08:59 PM