ID:

dvi_19666

 Coordinate:

scaffold_13049:12378933-12379010 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.1 -13.3

Flybase annnotation

CDS [Dvir\GJ11919-cds]; CDS [Dvir\GJ11919-cds]; exon [dvir_GLEANR_11927:5]; exon [dvir_GLEANR_11927:4]; intron [Dvir\GJ11919-in]

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################------------------------------------------------------------------------------##################################################
AGATTGCAACAGGATCAGCAGTAACCATTGGTGAATCACCGCGCAGACCAGTGCAAAAGCAGCGCCCGCTGCCCAGGCAGCAGCAGCAGCATTATCATCAACAGCAGGAGCAGCAAAAAGCGTCTGAGCTGGGCACACCGCGTCATCAAGCCAATGGCAATGTTGCACAGAATAACAA
*****************************************************.....((.((((..(((((....))))).)).)).)).....................******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060679
140x9_testes_total
 SRR060665
9_females_carcasses_total
 V116
male body		 SRR060663
160_0-2h_embryos_total
 V047
embryo
 M061
embryo
 SRR060672
9x160_females_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060656
9x160_ovaries_total
 SRR060673
9_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060688
160_ovaries_total
 SRR060669
160x9_females_carcasses_total
 SRR060683
160_testes_total
 GSM1528803
follicle cells		 M027
male body		 SRR060655
9x160_testes_total
 SRR060657
140_testes_total
 SRR060658
140_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060670
9_testes_total
 SRR060671
9x160_males_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060689
160x9_testes_total
 V053
head
 SRR060678
9x140_testes_total
 SRR1106720
embryo_8-10h
 SRR1106729
mixed whole adult body
.GATTGCAACAGGATCAGCA.............................................................................................................................................................. 19 0 1 4.00 4 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GATTGCAACAGGATCAGCAGT............................................................................................................................................................ 21 0 1 4.00 4 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................ATTATCATCAACAGCAGGAGC................................................................... 21 0 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........ACAGGATCAGCAGTAACCATTGGT.................................................................................................................................................. 24 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GCAGCAAAAAGCGTCTGAG.................................................. 19 0 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................GCATTATCATCAACAGCAGGAGC................................................................... 23 0 1 2.00 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......AACAGGATCAGCAGTAACC........................................................................................................................................................ 19 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................AGCAGCAAAAAGCGTCTGAGCT................................................ 22 0 1 2.00 2 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGTGCAAAAGCAGCGCCCG.............................................................................................................. 19 0 1 2.00 2 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................AAAAGCGTCTGAGCTGGGCAC.......................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GCAGCATTATCATCAACAGCAGGA..................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................AGCAAAAAGCGTCTGAGCT................................................ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................AACCATTGGTGAATCACCGCGC...................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAAGCGTCTGAGCTGGGCACA......................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................ATCAACAGCAGGAGCAGCA............................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................CAATGTTGCACAGAATAGCAA 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................GCATTATCATCAACAGCA........................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AGATTGCAACGGGATCAGCAG............................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CATCAAGCCAATGGCAATGTT.............. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GATTGCAACAGGATCAGC............................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................GCATTATCATCAACAGCAGGATC................................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AAGCGTCTGAGCTGGGCACACCG...................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TCATCAACAGCAGGAGCAGCA............................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GTAACCATTGGTGAATCACCGCGCA..................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................ACCGCGTCATCAAGCCAATGGCAATGT............... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TAACCATTGGTGAATCACCGCGCA..................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......CAACAGGATCAGCAGTAAC......................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AAAAAGCGTCTGAGCTGGGCACACCGC..................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................ATCAAGCCAATGGCAATGTTGCACAGAA...... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GTCATCAAGCCAATGGCAATGT............... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................AGCAAAAAGCGTCTGAGCTGGG............................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GTCTGAGCTGGGCACACCGC..................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GAGCAGCAAAAAGCGTCTG.................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................GCAAAAAGCGTCTGAGCTGGGC............................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TCAGCAGTAACCATTGGTGA................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................AGCGCCCGCTGCCCAGGCAGCAGCAGCAGC........................................................................................ 30 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TTGCAACAGGATCAGCAGT............................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................AGCAAAAAGCGTCTGAGCTGGGC............................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................ATCAAGCCAATGGCAATGTT.............. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................TTATCATCAACAGCAGGAGCA.................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................ACCATTGGTGAATCACCGCGC...................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................GCAGCAGCATTATCATCAACAGC......................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GTAACCATTGGTGAATCACCGCGC...................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................CAAAAGCAGCGCCCGCTGCC......................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CTGAGCTGGGCACACCGCGT................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GTCTGAGCTGGGCACACCG...................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TAACCATTGGTGAATCACCGCG....................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................CAAAAAGCGTCTGAGCTGGGC............................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................ATTATCATCAACAGCAGGA..................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................GTGAATCACCGCGCAGACCAGTGCAAA......................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................CGCCCGCTGCCCAGGCAGTAGCA............................................................................................. 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........ACAGGATCAGCAGTAACCA....................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................GGAGCAGCAAAAAGCGTCTGA................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................CATTATCATCAACAGCAGGAGC................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................GGTAACCATTGGTGAATCAC........................................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........ACAGGATCAGCAGTAACCATTGGTGAA............................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CAGGAGCAGCAAAAAGCGTCTG.................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GCAGCAAAAAGCGTCTGAGCTGGG............................................. 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CGGCAGTAACCATTGGTGAATCA............................................................................................................................................ 23 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCATCAACAGCAGGAGCAGC................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GCAGCAGCAGCATTATCATCAA............................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGCAAAAGCAGCGCCCGCTGCCCAG...................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TATCATCAACAGCAGGAGCAG................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................AGCGCCCGCTGCCCAGGCAGCC................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................GCATTATCATCAACAGCAGGAG.................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGCAGCAAAAAGCGTCTGAG.................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................AAAAGCGTCTGAGCTGGGC............................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................ACACCGCGTCATCAAGCCAAT....................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......AACAGGATCAGCAGTAAC......................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GCGTCTGAGCTGGGCACACCGCGTC.................................. 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................TTGGTGAATCACCGCGCAGACC................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................GCAAAAAGCGTCTGAGCTGGGCA........................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CACAGGATCAGCAGTAACCA....................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................ATTATCATCAACAGCAGGAGCA.................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................GGTGAATCACCGCGCAGACC................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................CAAAAAGCGTCTGAGCTGGGCACACCG...................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AGCAGCATTATCATCAACAGCAGG...................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................ATTGGTGAATCACCGCGCAGA................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................AGGAGCAGCAAAAGGCGTCTG.................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................AGCAGCATTATCATCAACAGCAGGAGCA.................................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................GCAGTAACCATTGGTGAATCAC........................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGCAGCCAAAAGCGTCCGA................................................... 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................AGCAGGAGCAGCAAAAAG.......................................................... 18 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................AACGATCGGTGAATCACC.......................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................ATCAAAAAGCGTATGAGCT................................................ 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................AGCAGGAGCGGCAAAGGGCGTC...................................................... 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................GCAGTATCCATACGTGAATC............................................................................................................................................. 20 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......CAACAGGATCAGAAGTCTCC........................................................................................................................................................ 20 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................ACCAGCAAAAAGCGCCTG.................................................... 18 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...TTGCAACAGGAACAGCACT............................................................................................................................................................ 19 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................AACAGAAGGAGCAGTAAA............................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GCATCATCTAGCCAAGGGC.................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................ATCAACAGCAGGAGCCGCT............................................................... 19 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCTAACGTTGTCCTAGTCGTCATTGGTAACCACTTAGTGGCGCGTCTGGTCACGTTTTCGTCGCGGGCGACGGGTCCGTCGTCGTCGTCGTAATAGTAGTTGTCGTCCTCGTCGTTTTTCGCAGACTCGACCCGTGTGGCGCAGTAGTTCGGTTACCGTTACAACGTGTCTTATTGTT
*******************************************************************.....((.((((..(((((....))))).)).)).)).....................***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060675
140x9_ovaries_total
 V116
male body		 SRR060672
9x160_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR1106729
mixed whole adult body
 SRR060663
160_0-2h_embryos_total
...................................AGTGGCGCGTCTGGTCACGTT.......................................................................................................................... 21 0 1 2.00 2 0 0 0 0 1 0 0 1 0 0 0 0 0
......................................................................................GTCGTAATAGTAGTTGTCGT........................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............CTAGTCGTCATTGGTAACCA.................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................CGGTTACCGTTACAACGTGTC........ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CGTCCTCGTCGTTTTTCGCAG...................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............CTAGTCGTCGTTGGTAACCACT................................................................................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GTTCGGTTACCGTTACAACGT........... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................GTCGTCGTAATAGTAGTTGTC.......................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GGCGCAGTAGTTCGGTTACCG.................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................TGGCGCGTCTGGTCACGTTTT........................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TGACCCGTGTGGCGCAGTAGT.............................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................AGTGGTGCGTCTGGTAACGTT.......................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................TGGGCGACGGGTCCGTCGTCGT............................................................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................TCATTGGTAACTTCTTAGGGGC......................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................TCGCTTCTGGTAACGTTTTCGT..................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0
....ACGTTGTCCTAGTCGTCGT........................................................................................................................................................... 19 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...TCCGTTGTCCTAGTCGTCGTTGG........................................................................................................................................................ 23 3 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....CGTTGGCCTAGTCGTCTT........................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:12378883-12379060 - dvi_19666 AGATT-G-CAACAGGATCAGCAGTAA---------------------CCATTGGTGAATCA---CCGC------------GCAGAC------CAGT---------------GCAAAAGCAGCGCCCGC---------------------------------------------------TGCCCAGGC---------------AGCAGCAGC---------------------------------------------------------------------------------AGCATT------------------------ATCATC---AAC---AG---------C---------------------------------------------------AGGAGCAGCAA--------------------------------------------------------------------------------------------AAAGCGTCTGAGCT--------------------------------GGGCACACCG-------------------------------------CG--------T-CA-----------TCAAGCCAATGGCAA-TGTTGCACAGAATAACAA
droMoj3 scaffold_6680:15092085-15092316 + AGATT-G-CAACAGGCTCAGCTGTAA---------------------ATGTTGGTGAATCG---CCGC------------GCAAAC------CAGCGCAGCAGCA---------GAAGCAGCGTCCGC---------------------------------------------------AGCCCAGGC---------------AGCATCAGCAA------------------TACCA---ACCAC---------------AGCA---G------------CAGCAGCAGCAGC------------AGCA------------------GCATCCACAACAG---------------------------------------------------------------------------------------C-----------------------------------------AGCAGCATCAACA---GCAGG------AGCAGCAAAACACGGTTGAGCT--------------------------------GGGCACACCA-------------------------------------CG--------T-CA------TTA--TCAGGCCAATGGCAA-TGTTCCGCCGAACAATAA
droGri2 scaffold_14906:7162807-7162982 + CAATG-G-CA---------GCGGCGG---------CAGCA---------GC---CGCC---------------TTT--------------------------ACTGCAGC-GCAA---CAGCAG------------------------------------------------------------------------------C---A------ACAA------CAACAA------CAGCAGCAGC---------AACAACAGCAGCAG------------CA------GCAACAGCAGT------CGCA------------------GC---AAC---AG---------C---------------------------------------------------AGCAGCAGCAA-----------------------------------------------------------------TC------AC---AAC---TGCAGCAGCATGCG---------------------------------------------------------------------------------------CA--------TGCA------TTG-----GCCCAACAGCATATGTTG----CATCAGCAA
droWil2 scf2_1100000004909:8948908-8949077 + AGCAG---C------------AGCAG---------CAACAACAGCAGCAAC---------------------TGTT------TCA-----------------------------------------------------------------------------------------------------------------TCATC---A---A------------------------CAATTGCAGC---TGCAACA------TCA---T------------CA---------------GC---AACAGCAGCAGCAGCAGCAACATCAAC---------AA-----------------------------------------------------------------------------------------------------------------------------------------CA------GC---TGCAACAACAGCAAGTGCCGC--------------------------------CAGTGTTAATC-----A-------------------------------------CGTCATCGCC----AACAAA-CGGT---------TCGCGAATA-------ATACGTCAA
dp5 3:11444887-11445047 - TGACT------CTGGCCCAGCATCAG---------CAGCA------------GGCGATCCAGCAGCAG---GCG-------------------A-------------------TC---CA------------------------------------------------------------------------------GCAGC---A------TCACCAGCATCTCCAGCAGCAACATCATCATC---------------------AGCAGCAGCATCAGGC---------------------------------GCAGCAGCAG------GCACAGCAA-----------------------------------------------------------------------------------------------------------------------------------------CA------GC---AGCAGCAACAGCAGG---C----------------------------------------------------------------------------------------------------------------------------TCAGCAGCAG----GCTCAGCAA
droPer2 scaffold_8:1414656-1414836 + GGATG-G-T--CGGC------GTCAG---------CAGCA-----------------------------------------------------------------------------ACAGCAGCAGCAGCGCAGAAATGGTAGACATTTGCA---------A---------------------------------------C---A------T------------------CAGCAGCAGCAGC------------------------------------------------------------------A---------------------------GCAGCAACAGCAACATTT----------GCAGCATCA-----GCTGCAGCATCAGC------AACAACTACAA-----------------------------------------------------------------CA------GC---TACAACAACAACAG----CGA--------------------------------CATA------------------------------------------------------------------GAAA-CAAT---------CAGCAATTGGAG----CAGCAGCCA
droAna3 scaffold_13117:3530063-3530240 - AAGTG-G-CAACAACCCCAGCAACA------------------------GC---------------------AGCA-----------------------CCGGCGGCGGCGGCAACAGCAGCAATAGCAGCGCCAGTGC------------------------------------------------C---------------GGCGGCAGC------------------------------------------A------ACA---G------------C------------AGCAGC---AGCAGCAGCA---------------------------GCAG------TAGCAGCA----------ACAATGCAGCCGTG-----------------------------------------------------------GCA-------GC---GG--------C------GGCGGCATCAGCGGCAGC------AGCAGCGGCGGGCATCA-----ACAACA----------------------------------------------------------------------------------------------------------------------------------GT
droBip1 scf7180000396583:521530-521703 - AGCTG---C------------ATCAG---------CAGCCGGAGCAGCAAA---------------------TGTT--------------------------------------------------------------------------------------ACGTCAGCAACGGCAACTGCCCACGCAGCCTGCCTACCAGC---A---------------------G------CAGCAGCAGC---------AGCAACATC---------------------------------------------ACCAGCAACAGCAGCAGG------AACAACAA---------CA---------------------------------------------------GCA---------------------------------------------------------------------------------------------------------GTTGAGGC-------------------------AATCA------------------------------------TTTGGCAACAACA--ATGCCGCC----AACAAC---------------------T--------GCTTTACAA
droKik1 scf7180000302388:372844-373022 + AACTG---C------------AGCAG---------CAACAGCAAGAACATC---------A---GCAGAAACTG-----------------------------------------------------------------------------------------------------------------C---------------AGCAGCAGC------------------------------------------A------ACA---G------------CA---------------AG---AACAGCAGCAGCAGCAGCAACATCATC---------AT-----------------------------------------------------------------------------------------------------------------------------------------CA------AT---TACCGCCGCAGCAAATTGAGC--------------------------------CACAGTTAACCAAA---GTGCCAAACCTGGTAGTAGCAACA---------------------------------GTGG-----CTCCTCAACTTCAGCAA----CCACCACAG
droFic1 scf7180000454065:89712-89881 - AGATG-A-T----GATGCAGCAGCAG---------CAGAA---------CC---------------------TGCACACGCAGCACCAACACAAC-----CT---------GCAGCAGCAGCATC---------AGAGTCACACGCAAC------------------------TGCAGCAGCACACTC---------------AGCAGCAGC------------------------AACAACAGC---------AGCAACAGCA---G------------CA---GCAGCAAC---------------------------------------------AG---------CA---------------------------------------------------GCAGCAGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAG----CAACAACAG
droEle1 scf7180000487321:751-912 - CA-----------GGCCCAGCAGCAACATGCCCA------------------------TCA---CCAG------------GCCCA-----------------------------------------------------------------------------------------------------------------CCAGC---A---------------------A------CAGCAGCAGC---------ACCAACAGCA---T------------CAGCAACAGCAGCA---GC------A---------------------GC---AAC---AA---------CA---------------------------------------ACAGCAGC---AGCAGCAGCAGCATC------------------------TCCATGCCCAGC---AGATGTTGGC--------------CC----------------------------------------------------------------------------------------------------------------------------------------------AAAGT---CAGGCCCAGTTG----CAGCAACAA
droRho1 scf7180000779479:252331-252484 + AGAAG---C------------AGCAG---------CAGCAGCAGCAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------CACCAGCAGCAGC---------AGCA---------------------------ACATCACCA---GC------A------------------------------------------------------------------------------------------------GCAGCAGCAACATC---------AGC-----------------------------------------AGCAGCATCAACA---GCTTC------AACAGCAAATGGCGC--------------------------------CTGAG------AAACCG-------------------------------------CT--------C-GA-----------GCTAACCAATAAGAC-AATAACGCCCTTTGGCTA
droBia1 scf7180000302428:2922160-2922330 - CAACA-A-C------------ACCAG---------CAGCA-----------------------------------------------------------CATACAGCAGCAGCATCAGGCACACCAGCAGCATGT-TGC--------------CTCCGTC---------------------------C---------------TGCAGCAGC------------------------------AGC---------AGCA---------A------------CA---------------GC---AACAGCAGCA---------------------------GCAGCAACAGCAGCACTC----------CCAACATCA-----------------------------------------------------------------CG---------------------------------------------------------------------------------------------------------------------------------------------CCCAGCAGCAACA--TCATGGCC----ATCCGC---------------TGCATCCGCAT----CATACACAC
droTak1 scf7180000415877:328798-328949 - CACTTAG-C--CAGGCCCAGCAGCAACATGCCCA------------------------TCA---TCAG------------GCCCA-----------------------------------------------------------------------------------------------------------------CCAGC---A---------------------G------CAGCAGCAAC---------ACCAACAGC---------------------------------------------AACAGCAGCAGCAACATCAGC---AAC---AG---------C---------------------------------------------------AGCAGCAGCAACATC------------------------TCCATGCACAGC---AGCTGTTGGC--------------CC----------------------------------------------------------------------------------------------------------------------------------------------------------AGAGTCAG----TTGCAGCAG
droEug1 scf7180000407136:396293-396471 + AGCTG---C------------AGCAACACAGTCAC------------CAATGTCACGACAT---TGGC------------GCAGAT------TAT--------------GAGCAACAGCAGCACCAGCAGCGCGGCCAGTTTACTCAATCAGC---------A---------------------------------------T---A---AT------------------------AACAAC---------------------------------------------------A---GC---AACTGCAGTA---------------------AT---AG---------TAGCAACT----------TCAGTACCGCCTCT-----------------------------------------------------------TCAGTGGG-----------------C------AGCAGCAT-------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGTCGGCAG----CAATAGCAG
dm3 chrX:12625212-12625397 - AGCAG---C------------AGCAG---------CAACAGCAACAACAAC---------------------AACACTAGCAACAA------TAA-----------------------------------------------------------------------------------------------------------C---A---------------------------------ACAAT---AGCAGCA------ACA---G------------CG---------------GC---AACAACA------------------------------------------ACACACCAAACGGTGCGCAACAGCA-----GCAACAACAACACCATCAGCAGCAGCAGCAACATC---------ATC------------------AGCAGCAACGTGTTGTTGCC------AGC--------------------------------------------------------------------------------------------------------------------------------------------A-GCAAC---------CAGCAACAGCAA----CAACAACAA
droSim2 3l:16268183-16268341 - AACAG---C---GGGCACAGCAGCAG---------------------CAACTGCACGATCC---CTAT------------GCACAC------TAC-----------------------------------------------------------------------------------------------------------CAACA---------------------A------CCGCAGGCGC---------TGCGCCAGCAGCAG------------CA---------------GC---AACAGCAGCA---------------GC---AAC---AA---------C---------------------------------------------------AACAGCAGCAA-----------------------------------------------------------------CA------GC---TGCTGCAACAGCAAG---CC-----------------------------------------------------------------------------------------------------ATTAAA-CAAG----CCT---CACATCTGTA---------TCCCA
droSec2 scaffold_4:1772453-1772600 + AGCTG-GACA---------ACAGCAG---------CAACA---------AC---CACC-CA--------------------------------------CCGACC---------GCAGCAGCAGCCGC------------------AGC------------------------------TGCCGTAGC---------------AGTAGCAGC---------------------------------------------------------------------------------A---AC---AACTGCAGCA---------------------AC---AG---------C---------------------------------------------------AGCCGCAGCAAC-----------CAACAACAGC------GCTTCCTT-----------------CAGCAGCAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAATAGCAA----CAACAGCAA
droYak3 X:3501336-3501502 - AGCCG---C------------AGCACGGCGGCTAT------------CAGC-AGCAAGCTG---CCAT------------G----------------------------------------------------------------------------ATGTCACAACAGCAGCAGCAATTGCTCAGCC---------------AGCAGCAGC---------------------------------------------------------------------------------AGCAGTCGCACCA---------------------------CC---AG---------C---------------------------------------------------AGCAGCAGCAACATGCCGCTGCCTACCAGCAGCACAACATCTATGGC-----------------------CAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCAA----CAGCAGCAT
droEre2 scaffold_4929:12168708-12168866 - TTCCA-G-C------------AGCAA--------------------------------------------------------------------------------------------CAGCAG------------------------------------------------------------------------------C---A------ACAG------CTGCAACAGCAGCAGCAGCAGCAGCAGCAGCA------GCA---G------------CT---------------GC---AACAGCAGCAGCAGCAGCAGCAGC------AAC---A--------------------------------------------------------------------------------------------------------------------------------------------------ACAGC------AGCAGCAACAGGCAGCT-----CAATCAGTGCCATGGCGCACCCAAC-----------------GTGCTCAGCC--------------------------------------------------------------------T--------GGAGCGCAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AGATT-G-CAACAGGATCAGCAGTAA---------------------CCATTGGTGAATCA---CCGC------------GCAGAC------CAGT---------------GCAAAAGCAGCGCCCGC---------------------------------------------------TGCCCAGGC---------------AGCAGCAGC---------------------------------------------------------------------------------AGCATT------------------------ATCATC---AAC---AG---------C---------------------------------------------------AGGAGCAGCAA--------------------------------------------------------------------------------------------AAAGCGTCTGAGCT--------------------------------GGGCACACCG-------------------------------------CG--------T-CA-----------TCAAGCCAATGGCAA-TGTTGCACAGAATAACAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.GATT-G-CAACAGGATCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.004000000100000001000000000000000000100100000000000000000000000000
.GATT-G-CAACAGGATCAGCAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.004000000000000010100000000000001000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................ATT------------------------ATCATC---AAC---AG---------C---------------------------------------------------AGGAGC.........................................................................................................................................................................................................................................................2113.003001000000000000200000000000000000000000000000000000000000000000
..........ACAGGATCAGCAGTAA---------------------CCATTGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002001000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAA--------------------------------------------------------------------------------------------AAAGCGTCTGAG............................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000011
......................................................................................................................................................................................................................................................................................................GCATT------------------------ATCATC---AAC---AG---------C---------------------------------------------------AGGAGC.........................................................................................................................................................................................................................................................2312.002000000000000000100000000000000000000000000000000000000000001000
.........AACAGGATCAGCAGTAA---------------------CC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000001000000000000000000000000000000000000000000000000100
....................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAA--------------------------------------------------------------------------------------------AAAGCGTCTGAGCT--------------------------------..........................................................................................................2212.002000000000000010000000000000000000000100000000000000000000000000
.............................................................................................AGT---------------GCAAAAGCAGCGCCCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000000000000000000100000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------------------------------------------------------------------------AAAGCGTCTGAGCT--------------------------------GGGCAC....................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................GC---------------------------------------------------------------------------------AGCATT------------------------ATCATC---AAC---AG---------C---------------------------------------------------AGGA...........................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA--------------------------------------------------------------------------------------------AAAGCGTCTGAGCT--------------------------------..........................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
........................AA---------------------CCATTGGTGAATCA---CCGC------------GC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCGTCTGAGCT--------------------------------GGGCACA...................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................ATC---AAC---AG---------C---------------------------------------------------AGGAGCAGCA.....................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................GCATT------------------------ATCATC---AAC---AG---------C---------------------------------------------------A..............................................................................................................................................................................................................................................................1811.001000000100000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-----------TCAAGCCAATGGCAA-TGTT..............2111.001000000000000000000000010000000000000000000000000000000000000000
.GATT-G-CAACAGGATCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGTCTGAGCT--------------------------------GGGCACACCG-------------------------------------...........................................................2311.001000000000000001000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TCATC---AAC---AG---------C---------------------------------------------------AGGAGCAGCA.....................................................................................................................................................................................................................................................2111.001000000000000000000000001000000000000000000000000000000000000000
......................GTAA---------------------CCATTGGTGAATCA---CCGC------------GCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCG-------------------------------------CG--------T-CA-----------TCAAGCCAATGGCAA-TGT...............2711.001001000000000000000000000000000000000000000000000000000000000000
.......................TAA---------------------CCATTGGTGAATCA---CCGC------------GCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
........CAACAGGATCAGCAGTAA---------------------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------------------------------------------------------------------------------------AAAGCGTCTGAGCT--------------------------------GGGCACACCG-------------------------------------C..........................................................2711.001000000000000001000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------TCAAGCCAATGGCAA-TGTTGCACAGAA......2811.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------T-CA-----------TCAAGCCAATGGCAA-TGT...............2211.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA--------------------------------------------------------------------------------------------AAAGCGTCTGAGCT--------------------------------GGG.......................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGAGCT--------------------------------GGGCACACCG-------------------------------------C..........................................................2011.001000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGCAA--------------------------------------------------------------------------------------------AAAGCGTCTG..............................................................................................................................................1911.001000000000000000000000000000000001000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................GCAA--------------------------------------------------------------------------------------------AAAGCGTCTGAGCT--------------------------------GGGC......................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
................TCAGCAGTAA---------------------CCATTGGTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................AGCGCCCGC---------------------------------------------------TGCCCAGGC---------------AGCAGCAGC---------------------------------------------------------------------------------AGC........................................................................................................................................................................................................................................................................................................................................................................3011.001000000000000000000000000000000000000000000000000000000000000010
...TT-G-CAACAGGATCAGCAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA--------------------------------------------------------------------------------------------AAAGCGTCTGAGCT--------------------------------GGGC......................................................................................................2311.001000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------TCAAGCCAATGGCAA-TGTT..............2011.001000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TT------------------------ATCATC---AAC---AG---------C---------------------------------------------------AGGAGCA........................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.........................A---------------------CCATTGGTGAATCA---CCGC------------GC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
...............................................................................................................................................................................................................GCAGC---------------------------------------------------------------------------------AGCATT------------------------ATCATC---AAC---AG---------C---------------------------------------------------...............................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
......................GTAA---------------------CCATTGGTGAATCA---CCGC------------GC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
................................................................................................................CAAAAGCAGCGCCCGC---------------------------------------------------TGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCT--------------------------------GGGCACACCG-------------------------------------CG--------T-...............................................2011.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGAGCT--------------------------------GGGCACACCG-------------------------------------...........................................................1911.001000000000000000000000000000001000000000000000000000000000000000
.......................TAA---------------------CCATTGGTGAATCA---CCGC------------G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CAA--------------------------------------------------------------------------------------------AAAGCGTCTGAGCT--------------------------------GGGC......................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................ATT------------------------ATCATC---AAC---AG---------C---------------------------------------------------AGGA...........................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.....................................................GTGAATCA---CCGC------------GCAGAC------CAGT---------------GCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..........ACAGGATCAGCAGTAA---------------------CCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAGCAA--------------------------------------------------------------------------------------------AAAGCGTCTGA.............................................................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CATT------------------------ATCATC---AAC---AG---------C---------------------------------------------------AGGAGC.........................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
..........ACAGGATCAGCAGTAA---------------------CCATTGGTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000010000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................C---------------------------------------------------AGGAGCAGCAA--------------------------------------------------------------------------------------------AAAGCGTCTG..............................................................................................................................................2211.001000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAA--------------------------------------------------------------------------------------------AAAGCGTCTGAGCT--------------------------------GGG.......................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................ATCATC---AAC---AG---------C---------------------------------------------------AGGAGCAGC......................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................GCAGCAGC---------------------------------------------------------------------------------AGCATT------------------------ATCATC---AA..................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................T---------------GCAAAAGCAGCGCCCGC---------------------------------------------------TGCCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................T------------------------ATCATC---AAC---AG---------C---------------------------------------------------AGGAGCAG.......................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
.......................................................................................................................AGCGCCCGC---------------------------------------------------TGCCCAGGC---------------AGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000001000000000000000000000000
......................................................................................................................................................................................................................................................................................................GCATT------------------------ATCATC---AAC---AG---------C---------------------------------------------------AGGAG..........................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAA--------------------------------------------------------------------------------------------AAAGCGTCTGAG............................................................................................................................................2011.001000001000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------------------------------------------------------------------------AAAGCGTCTGAGCT--------------------------------GGGC......................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCG-------------------------------------CG--------T-CA-----------TCAAGCCAAT........................2111.001000000000000000000000000100000000000000000000000000000000000000
.........AACAGGATCAGCAGTAA---------------------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000100000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTCTGAGCT--------------------------------GGGCACACCG-------------------------------------CG--------T-C..............................................2511.001000100000000000000000000000000000000000000000000000000000000000
..................................................TTGGTGAATCA---CCGC------------GCAGAC------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................GCAA--------------------------------------------------------------------------------------------AAAGCGTCTGAGCT--------------------------------GGGCA.....................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................ATT------------------------ATCATC---AAC---AG---------C---------------------------------------------------AGGAGCA........................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
....................................................GGTGAATCA---CCGC------------GCAGAC------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CAA--------------------------------------------------------------------------------------------AAAGCGTCTGAGCT--------------------------------GGGCACACCG-------------------------------------...........................................................2711.001100000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................AGC---------------------------------------------------------------------------------AGCATT------------------------ATCATC---AAC---AG---------C---------------------------------------------------AGG............................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
.................................................ATTGGTGAATCA---CCGC------------GCAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000001000000000000000000000000000000000000000
.................................................................................................................................................................................................................AGC---------------------------------------------------------------------------------AGCATT------------------------ATCATC---AAC---AG---------C---------------------------------------------------AGGAGCA........................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
...................GCAGTAA---------------------CCATTGGTGAATCA---C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................AG---------C---------------------------------------------------AGGAGCAGCAA--------------------------------------------------------------------------------------------AAAG....................................................................................................................................................1820.501000000000000000000000000000010000000000000000000000000000000000
droMoj3
AGATT-G-CAACAGGCTCAGCTGTAA---------------------ATGTTGGTGAATCG---CCGC------------GCAAAC------CAGCGCAGCAGCA---------GAAGCAGCGTCCGC---------------------------------------------------AGCCCAGGC---------------AGCATCAGCAA------------------TACCA---ACCAC---------------AGCA---G------------CAGCAGCAGCAGC------------AGCA------------------GCATCCACAACAG---------------------------------------------------------------------------------------C-----------------------------------------AGCAGCATCAACA---GCAGG------AGCAGCAAAACACGGTTGAGCT--------------------------------GGGCACACCA-------------------------------------CG--------T-CA------TTA--TCAGGCCAATGGCAA-TGTTCCGCCGAACAATAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGGCAA-TGTTCCGCCGAAC.....2213.003300000
.......................................................GAATCG---CCGC------------GCAAAC------CAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003300000
.......................................................GAATCG---CCGC------------GCAAAC------CAGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TCAGGCCAATGGCAA-TGTTCCGCCGAA......2812.002200000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAAAACACGGTTGAGCT--------------------------------GGGC......................................................................................................2611.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCA-------------------------------------CG--------T-CA------TTA--TCAGGCCAAT........................2411.001100000
.......................TAA---------------------ATGTTGGTGAATCG---CC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACACCA-------------------------------------CG--------T-CA------TTA--TCAGG.............................2111.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------TTA--TCAGGCCAATGGCAA-TGTTCC............2511.001100000
......................GTAA---------------------ATGTTGGTGAATCG---CCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TCAGGCCAATGGCAA-TGTT..............2011.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACCA-------------------------------------CG--------T-CA------TTA--TCAGGCC...........................2211.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCATCAACA---GCAGG------AGCAG...........................................................................................................................................................2311.001100000
....................................................GGTGAATCG---CCGC------------GCAAAC------CAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.................................................................................CAAAC------CAGCGCAGCAGCA---------GAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.....................................................................................................................GCAGCGTCCGC---------------------------------------------------AGCCCAGGC---------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
....................................................GGTGAATCG---CCGC------------GCAAAC------CAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACGGTTGAGCT--------------------------------GGGCACAC..................................................................................................2211.001000001
.................................................GTTGGTGAATCG---CCGC------------GCAAAC------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACGGTTGAGCT--------------------------------GGGCACACCA-------------------------------------CG--------T-...............................................2711.001100000
...................................................................................................GCAGCA---------GAAGCAGCGTCCGC---------------------------------------------------AG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
................................................................................................GCAGCAGCA---------GAAGCAGCGTCCGC---------------------------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACACGGTTGAGCT--------------------------------GGGCACACC.................................................................................................2411.001000001
.......................................................GAATCG---CCGC------------GCAAAC------CAGCGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.........................................................................................................................................................................................................................................................................................................................................ATCCACAACAG---------------------------------------------------------------------------------------C-----------------------------------------AGCAGCATCAA................................................................................................................................................................................2311.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCATCAACA---GCAGG------AGC.............................................................................................................................................................2011.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAACACGGTTGAGCT--------------------------------GGGC......................................................................................................2211.001000001
.......................TAA---------------------ATGTTGGTGAATCG---CCGC------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.....................................................GTGAATCG---CCGC------------GCAAAC------CAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
................................................................................................GCAGCAGCA---------GAAGCAGCGTCCGC---------------------------------------------------AGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...........................................................................................................................................................................................................................................................................................................................................CCACAACAG---------------------------------------------------------------------------------------C-----------------------------------------AGCAGCATCAACA---...........................................................................................................................................................................2311.001100000
.....................TGTAA---------------------ATGTTGGTGAATCG---CC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................GCTGTAA---------------------ATGTTGGTGAATCG---CCGC------------GC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGTTGAGCT--------------------------------GGGCAC....................................................................................................1811.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------AGCAGCAAAACACGGTTGAGC...........................................................................................................................................2311.001000010
.....................................................................................................................................................................................................................A------------------TACCA---ACCAC---------------AGCA---G------------CAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
................................................................................................GCAGCAGCA---------GAAGCAGCGTCCGC---------------------------------------------------AG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
......G-CAACAGGCTCAGCTGTAA---------------------ATGTTGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.................................................................................................................................................................................................................................................................................................................AGCA------------------GCATCCACAACAG---------------------------------------------------------------------------------------C-----------------------------------------AGC........................................................................................................................................................................................2111.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA--TCAGGCCAATGGCAA-TGTT..............2211.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAAACACGGTTGAGC...........................................................................................................................................2011.001000001
........CAACAGGCTCAGCTGTAA---------------------ATGTTGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG------AGCAGCAAAACACGGTTGAGC...........................................................................................................................................2411.001100000
.........................................................................................................................................................................................................................................................................................................................................ATCCACAACAG---------------------------------------------------------------------------------------C-----------------------------------------AGCAGCATC..................................................................................................................................................................................2111.001000001
.............................................................................................................................................................................................................CATCAGCAA------------------TACCA---ACCAC---------------AGCA---.....................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100
...............................................................................................................................................................................................................TCAGCAA------------------TACCA---ACCAC---------------AGCA---G------------CA......................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
......................GTAA---------------------ATGTTGGTGAATCG---CCGC------------GT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTGAGCT--------------------------------GGGCACACC.................................................................................................1911.001100000
...................................................................................AAC------CAGCGCAGCAGCA---------GAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GCAGG------AGCAGCAAAACACGG.................................................................................................................................................2111.001100000
........CAACAGGCTCAGCTGTAA---------------------ATGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...........................................................................................................................TCCGC---------------------------------------------------AGCCCAGGC---------------AGCATCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
........................................................AATCG---CCGC------------GCAAAC------CAGCGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACACGGTTGAGCT--------------------------------GGGCACACCA-------------------------------------C..........................................................2711.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGGCAA-TGTTCCGCCGA.......2011.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCATCAACA---GCAGG------AGCAGC..........................................................................................................................................................2311.001000001
.GATT-G-CAACAGGCTCAGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.GATT-G-CAACAGGCTCAGCTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.........................................................................................................................................................................................................................................................................................................................................ATCCACAACAG---------------------------------------------------------------------------------------C-----------------------------------------AGCAGCATCA.................................................................................................................................................................................2211.001100000
AGATT-G-CAACAGGCTCAGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
......................GTAA---------------------ATGTTGGTGAATCG---CCGC------------G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.........................................................................................................................................................................................................................................................................................................................................ATCCACAACAG---------------------------------------------------------------------------------------C-----------------------------------------AGCAGCAT...................................................................................................................................................................................2011.001000001
.........................................................ATCG---CCGC------------GCAAAC------CAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.......................................................................................................................................................................................................................................................................................................................................GCATCCACAACAG---------------------------------------------------------------------------------------C-----------------------------------------AGCAGC.....................................................................................................................................................................................2020.501000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAACA---GCAGG------AGCAG...........................................................................................................................................................1820.501000001
.........................................................................................................................................................................................................................................ACCA---ACCAC---------------AGCA---G------------CAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................2230.331010000
.............................................................................................................................................................................................................................................................................................................................................ACAACAG---------------------------------------------------------------------------------------C-----------------------------------------AGCAGCATCAAC...............................................................................................................................................................................2040.251100000
................................................................................................................................................................................................................................................................................................................................................ACAG---------------------------------------------------------------------------------------C-----------------------------------------AGCAGCATCAACA---GC.........................................................................................................................................................................2080.131100000
.............................................................................................................................................................................................................................................................................................GCAGCAGC------------AGCA------------------GCATCCAC.................................................................................................................................................................................................................................................................................................................................20140.071100000
.................................................................................................................................................................................................................................................CCAC---------------AGCA---G------------CAGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................20200.051000010
droGri2
CAATG-G-CA---------GCGGCGG---------CAGCA---------GC---CGCC---------------TTT--------------------------ACTGCAGC-GCAA---CAGCAG------------------------------------------------------------------------------C---A------ACAA------CAACAA------CAGCAGCAGC---------AACAACAGCAGCAG------------CA------GCAACAGCAGT------CGCA------------------GC---AAC---AG---------C---------------------------------------------------AGCAGCAGCAA-----------------------------------------------------------------TC------AC---AAC---TGCAGCAGCATGCG---------------------------------------------------------------------------------------CA--------TGCA------TTG-----GCCCAACAGCATATGTTG----CATCAGCAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................G------------------------------------------------------------------------------C---A------ACAA------CAACAA------CAGCAGCAGC---------AACA..............................................................................................................................................................................................................................................................................................................................................................................................................27200.05110
....................................................................................................................................................................................................................................A------CAGCAGCAGC---------AACAACAGCAGCAG------------CA------................................................................................................................................................................................................................................................................................................................................................................................27200.05110
..................................................................................................................................................................................................................................CAA------CAGCAGCAGC---------AACAACAGCA........................................................................................................................................................................................................................................................................................................................................................................................................23200.05101
.....................................................................................................................................................................................................................ACAA------CAACAA------CAGCAGCAGC---------A.................................................................................................................................................................................................................................................................................................................................................................................................................21200.05110
..............................................................................................................................................................................................................................................CAGCAGC---------AACAACAGCAGCAG------------CA------GCA.............................................................................................................................................................................................................................................................................................................................................................................26200.05110
droWil2
AGCAG---C------------AGCAG---------CAACAACAGCAGCAAC---------------------TGTT------TCA-----------------------------------------------------------------------------------------------------------------TCATC---A---A------------------------CAATTGCAGC---TGCAACA------TCA---T------------CA---------------GC---AACAGCAGCAGCAGCAGCAACATCAAC---------AA-----------------------------------------------------------------------------------------------------------------------------------------CA------GC---TGCAACAACAGCAAGTGCCGC--------------------------------CAGTGTTAATC-----A-------------------------------------CGTCATCGCC----AACAAA-CGGT---------TCGCGAATA-------ATACGTCAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAAGTGCCGC--------------------------------.................................................................................................................1820.50100010
...............................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCAGCAAC.............................................................................................................................................................................................................................................................................................................................................20200.10202000
..............................................................................................................................................................................................................................................................A------TCA---T------------CA---------------GC---AACAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................22200.10200020
......................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACATCAAC---------AA-----------------------------------------------------------------------------------------------------------------------------------------CA------...........................................................................................................................................................................23200.10220000
...............................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCAGCAACA............................................................................................................................................................................................................................................................................................................................................21200.10200020
..............................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................19200.05101000
.....................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACATCAAC---------A.............................................................................................................................................................................................................................................................................................................................21200.05100010
.........................................................................................................................................................................................................................................................................................................................CAGCAGCAACATCAAC---------AA-----------------------------------------------------------------------------------------------------------------------------------------...................................................................................................................................................................................18200.05100010
.......................................................................................................................................................................................................................................................................A---T------------CA---------------GC---AACAGCAGCAGCAG....................................................................................................................................................................................................................................................................................................................................................20200.05101000
...AG---C------------AGCAG---------CAACAACAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
dp5
TGACT------CTGGCCCAGCATCAG---------CAGCA------------GGCGATCCAGCAGCAG---GCG-------------------A-------------------TC---CA------------------------------------------------------------------------------GCAGC---A------TCACCAGCATCTCCAGCAGCAACATCATCATC---------------------AGCAGCAGCATCAGGC---------------------------------GCAGCAGCAG------GCACAGCAA-----------------------------------------------------------------------------------------------------------------------------------------CA------GC---AGCAGCAACAGCAGG---C----------------------------------------------------------------------------------------------------------------------------TCAGCAGCAG----GCTCAGCAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................AGCA------------GGCGATCCAGCAGCAG---G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................CAGCA------------GGCGATCCAGCAGCAG---G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGG---C----------------------------------------------------------------------------------------------------------------------------TCAGCAG................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGG---C----------------------------------------------------------------------------------------------------------------------------TCAGCAGCA..............2020.5010000100000
..........................................................................................................................................................................................................................AGCATCTCCAGCAGCAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGG---C----------------------------------------------------------------------------------------------------------------------------TCAGCAGCAG----G........2220.5010100000000
...............................................................................................................................................................................................................................................................................................................................................AGCAA-----------------------------------------------------------------------------------------------------------------------------------------CA------GC---AGCAGCAACAGCAGG---C----------------------------------------------------------------------------------------------------------------------------.......................2520.5010010000000
....................................................................................................................................................................................................................................................C---------------------AGCAGCAGCATCAGGC---------------------------------GCAG.................................................................................................................................................................................................................................................................................................................................................2120.5010100000000
..................................................................................................................................................................................................................................................................................................................................CAG------GCACAGCAA-----------------------------------------------------------------------------------------------------------------------------------------CA------GC---AGCAG.................................................................................................................................................................2120.5010100000000
.............GGCCCAGCATCAG---------CAGCA------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000010000
..................................................................................................................................................................................................................................CAGCAGCAACATCATCATC---------------------AGCA..................................................................................................................................................................................................................................................................................................................................................................................................2340.2510100000000
...................................................................................................................................................................................................................................AGCAGCAACATCATCATC---------------------AGC...................................................................................................................................................................................................................................................................................................................................................................................................2140.2510100000000
............................................................................................................................................................................................................................................................................................................................................CACAGCAA-----------------------------------------------------------------------------------------------------------------------------------------CA------GC---AGCAGCAACA............................................................................................................................................................2290.1110010000000
...............................................................................................................................................................................................................................................................................................................................................AGCAA-----------------------------------------------------------------------------------------------------------------------------------------CA------GC---AGCAGCAACAGCA.........................................................................................................................................................22200.0510000000001
................................................................................................................................................................................................................................................................................................................................................GCAA-----------------------------------------------------------------------------------------------------------------------------------------CA------GC---AGCAGCAACAGCA.........................................................................................................................................................21200.0510100000000
droPer2
GGATG-G-T--CGGC------GTCAG---------CAGCA-----------------------------------------------------------------------------ACAGCAGCAGCAGCGCAGAAATGGTAGACATTTGCA---------A---------------------------------------C---A------T------------------CAGCAGCAGCAGC------------------------------------------------------------------A---------------------------GCAGCAACAGCAACATTT----------GCAGCATCA-----GCTGCAGCATCAGC------AACAACTACAA-----------------------------------------------------------------CA------GC---TACAACAACAACAG----CGA--------------------------------CATA------------------------------------------------------------------GAAA-CAAT---------CAGCAATTGGAG----CAGCAGCCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................ATGGTAGACATTTGCA---------A---------------------------------------C---A------T------------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003300000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-CAAT---------CAGCAATTGGAG----C........1912.002200000
.......................CAG---------CAGCA-----------------------------------------------------------------------------ACAGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.153300000
...........................................................................................................................................................................................................................................CAGCAGCAGC------------------------------------------------------------------A---------------------------GCAGCAACAGC..................................................................................................................................................................................................................................................................................................................22200.051100000
........................AG---------CAGCA-----------------------------------------------------------------------------ACAGCAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
........................................................................................................................................................A---------A---------------------------------------C---A------T------------------CAGCAGCAGCAGC------------------------------------------------------------------A---------------------------GCAG.........................................................................................................................................................................................................................................................................................................................23200.051010000
.........................................................................................................................................................................................................................................AGCAGCAGCAGC------------------------------------------------------------------A---------------------------GCAGC........................................................................................................................................................................................................................................................................................................................18200.051010000
...............................................................................................................................................................................................................................................AGCAGC------------------------------------------------------------------A---------------------------GCAGCAACAGCAAC...............................................................................................................................................................................................................................................................................................................21200.051010000
droAna3
AAGTG-G-CAACAACCCCAGCAACA------------------------GC---------------------AGCA-----------------------CCGGCGGCGGCGGCAACAGCAGCAATAGCAGCGCCAGTGC------------------------------------------------C---------------GGCGGCAGC------------------------------------------A------ACA---G------------C------------AGCAGC---AGCAGCAGCA---------------------------GCAG------TAGCAGCA----------ACAATGCAGCCGTG-----------------------------------------------------------GCA-------GC---GG--------C------GGCGGCATCAGCGGCAGC------AGCAGCGGCGGGCATCA-----ACAACA----------------------------------------------------------------------------------------------------------------------------------GTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................GCAATAGCAGCGCCAGTGC------------------------------------------------C---------------GGCGGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
......................................................................................................................................................................................................................................................................................................................................................................................AGCCGTG-----------------------------------------------------------GCA-------GC---GG--------C------GGCGGC..................................................................................................................................................................................2111.001010000
.........AACAACCCCAGCAACA------------------------GC---------------------AGCA-----------------------CC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.............................................................................................................................AGCAGCGCCAGTGC------------------------------------------------C---------------GGCGGCAGC------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
.................................................................................................................................................................................................................................................................................................................................................................AGCA----------ACAATGCAGCCGTG-----------------------------------------------------------GCA-------GC---.........................................................................................................................................................................................................2311.001010000
........CAACAACCCCAGCAACA------------------------GC---------------------AGCA-----------------------CCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
........................................................................................................GGCGGCGGCAACAGCAGCAATAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCGGCAGC------AGCAGCGGCGGGC...................................................................................................................................................2511.001000010
...................GCAACA------------------------GC---------------------AGCA-----------------------CCGGCGGCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCAGC------AGCAGCGGCGGGCA..................................................................................................................................................2211.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCGGCAGC------AGCAGCGGC.......................................................................................................................................................2111.001010000
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCA----------ACAATGCAGCCGT....................................................................................................................................................................................................................................................................................2011.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------AGCAGCGGCGGGCAT.................................................................................................................................................1811.001100000
..................................................................................................................................................................................................................................................................................................................................................................GCA----------ACAATGCAGCCGTG-----------------------------------------------------------GCA-------GC---.........................................................................................................................................................................................................2211.001001000
...............................................................................................................GCAACAGCAGCAATAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501100000
..................................................................................................................................................................................................................................................................................................................GCAGCA---------------------------GCAG------TAGCAGCA----------ACAAT............................................................................................................................................................................................................................................................................................2320.501010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCAGC------AGCAGCGGCGGGG...................................................................................................................................................2240.251010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAGC------AGCAGCGGCGG.....................................................................................................................................................1890.222200000
...............................................................................................................................................................................................................GCAGC------------------------------------------A------ACA---G------------C------------AGCAGC---AGCA..............................................................................................................................................................................................................................................................................................................................................................21200.153030000
.............................................................................................................................................................................................................CGGCAGC------------------------------------------A------ACA---G------------C------------AGCAGC---AG................................................................................................................................................................................................................................................................................................................................................................2180.131100000
.........................................................................................................................................................................................................................................................................................................GC---AGCAGCAGCA---------------------------GCAG------TAGCAGC............................................................................................................................................................................................................................................................................................................23190.112020000
...........................................................................................................................................................................................................................................................................G------------C------------AGCAGC---AGCAGCAGCA---------------------------GCAG------TA.................................................................................................................................................................................................................................................................................................................24170.061100000
........................................................................................................................................................................................................................................................................................................AGC---AGCAGCAGCA---------------------------GCAG------TAGC...............................................................................................................................................................................................................................................................................................................21200.051010000
...........................................................................................................................................................................................................................................................................G------------C------------AGCAGC---AGCAGCAGCA---------------------------.............................................................................................................................................................................................................................................................................................................................18200.051001000
...............................................................................................................................................................................................................................................................................................................GCAGCAGCA---------------------------GCAG------TAGCAGC............................................................................................................................................................................................................................................................................................................20200.051000001
..............................................................................................................................................................................................................................................................................................................AGCAGCAGCA---------------------------GCAG------TAGCAGCA----------.................................................................................................................................................................................................................................................................................................22200.051000001
.................................................................................................................................................................................................................................................................................................................AGCAGCA---------------------------GCAG------TAGCAGCA----------.................................................................................................................................................................................................................................................................................................19200.051000001
...............................................................................................................................................................................................................GCAGC------------------------------------------A------ACA---G------------C------------AGCAGC---AGCAGCAG..........................................................................................................................................................................................................................................................................................................................................................25200.051100000
.................................................................................................................................................................................................................AGC------------------------------------------A------ACA---G------------C------------AGCAGC---AGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................24200.051100000
droBip1
AGCTG---C------------ATCAG---------CAGCCGGAGCAGCAAA---------------------TGTT--------------------------------------------------------------------------------------ACGTCAGCAACGGCAACTGCCCACGCAGCCTGCCTACCAGC---A---------------------G------CAGCAGCAGC---------AGCAACATC---------------------------------------------ACCAGCAACAGCAGCAGG------AACAACAA---------CA---------------------------------------------------GCA---------------------------------------------------------------------------------------------------------GTTGAGGC-------------------------AATCA------------------------------------TTTGGCAACAACA--ATGCCGCC----AACAAC---------------------T--------GCTTTACAASizeHit CountTotal NormTotal
No Reads
droKik1
AACTG---C------------AGCAG---------CAACAGCAAGAACATC---------A---GCAGAAACTG-----------------------------------------------------------------------------------------------------------------C---------------AGCAGCAGC------------------------------------------A------ACA---G------------CA---------------AG---AACAGCAGCAGCAGCAGCAACATCATC---------AT-----------------------------------------------------------------------------------------------------------------------------------------CA------AT---TACCGCCGCAGCAAATTGAGC--------------------------------CACAGTTAACCAAA---GTGCCAAACCTGGTAGTAGCAACA---------------------------------GTGG-----CTCCTCAACTTCAGCAA----CCACCACAGSizeHit CountTotal NormTotal
No Reads
droFic1
AGATG-A-T----GATGCAGCAGCAG---------CAGAA---------CC---------------------TGCACACGCAGCACCAACACAAC-----CT---------GCAGCAGCAGCATC---------AGAGTCACACGCAAC------------------------TGCAGCAGCACACTC---------------AGCAGCAGC------------------------AACAACAGC---------AGCAACAGCA---G------------CA---GCAGCAAC---------------------------------------------AG---------CA---------------------------------------------------GCAGCAGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAG----CAACAACAGSizeHit CountTotal NormTotal
No Reads
droEle1
CA-----------GGCCCAGCAGCAACATGCCCA------------------------TCA---CCAG------------GCCCA-----------------------------------------------------------------------------------------------------------------CCAGC---A---------------------A------CAGCAGCAGC---------ACCAACAGCA---T------------CAGCAACAGCAGCA---GC------A---------------------GC---AAC---AA---------CA---------------------------------------ACAGCAGC---AGCAGCAGCAGCATC------------------------TCCATGCCCAGC---AGATGTTGGC--------------CC----------------------------------------------------------------------------------------------------------------------------------------------AAAGT---CAGGCCCAGTTG----CAGCAACAASizeHit CountTotal NormTotal
No Reads
droRho1
AGAAG---C------------AGCAG---------CAGCAGCAGCAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------CACCAGCAGCAGC---------AGCA---------------------------ACATCACCA---GC------A------------------------------------------------------------------------------------------------GCAGCAGCAACATC---------AGC-----------------------------------------AGCAGCATCAACA---GCTTC------AACAGCAAATGGCGC--------------------------------CTGAG------AAACCG-------------------------------------CT--------C-GA-----------GCTAACCAATAAGAC-AATAACGCCCTTTGGCTASizeHit CountTotal NormTotal
No Reads
droBia1
CAACA-A-C------------ACCAG---------CAGCA-----------------------------------------------------------CATACAGCAGCAGCATCAGGCACACCAGCAGCATGT-TGC--------------CTCCGTC---------------------------C---------------TGCAGCAGC------------------------------AGC---------AGCA---------A------------CA---------------GC---AACAGCAGCA---------------------------GCAGCAACAGCAGCACTC----------CCAACATCA-----------------------------------------------------------------CG---------------------------------------------------------------------------------------------------------------------------------------------CCCAGCAGCAACA--TCATGGCC----ATCCGC---------------TGCATCCGCAT----CATACACACSizeHit CountTotal NormTotal
No Reads
droTak1
CACTTAG-C--CAGGCCCAGCAGCAACATGCCCA------------------------TCA---TCAG------------GCCCA-----------------------------------------------------------------------------------------------------------------CCAGC---A---------------------G------CAGCAGCAAC---------ACCAACAGC---------------------------------------------AACAGCAGCAGCAACATCAGC---AAC---AG---------C---------------------------------------------------AGCAGCAGCAACATC------------------------TCCATGCACAGC---AGCTGTTGGC--------------CC----------------------------------------------------------------------------------------------------------------------------------------------------------AGAGTCAG----TTGCAGCAGSizeHit CountTotal NormTotal
No Reads
droEug1
AGCTG---C------------AGCAACACAGTCAC------------CAATGTCACGACAT---TGGC------------GCAGAT------TAT--------------GAGCAACAGCAGCACCAGCAGCGCGGCCAGTTTACTCAATCAGC---------A---------------------------------------T---A---AT------------------------AACAAC---------------------------------------------------A---GC---AACTGCAGTA---------------------AT---AG---------TAGCAACT----------TCAGTACCGCCTCT-----------------------------------------------------------TCAGTGGG-----------------C------AGCAGCAT-------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGTCGGCAG----CAATAGCAGSizeHit CountTotal NormTotal
No Reads
dm3
AGCAG---C------------AGCAG---------CAACAGCAACAACAAC---------------------AACACTAGCAACAA------TAA-----------------------------------------------------------------------------------------------------------C---A---------------------------------ACAAT---AGCAGCA------ACA---G------------CG---------------GC---AACAACA------------------------------------------ACACACCAAACGGTGCGCAACAGCA-----GCAACAACAACACCATCAGCAGCAGCAGCAACATC---------ATC------------------AGCAGCAACGTGTTGTTGCC------AGC--------------------------------------------------------------------------------------------------------------------------------------------A-GCAAC---------CAGCAACAGCAA----CAACAACAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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droSim2
AACAG---C---GGGCACAGCAGCAG---------------------CAACTGCACGATCC---CTAT------------GCACAC------TAC-----------------------------------------------------------------------------------------------------------CAACA---------------------A------CCGCAGGCGC---------TGCGCCAGCAGCAG------------CA---------------GC---AACAGCAGCA---------------GC---AAC---AA---------C---------------------------------------------------AACAGCAGCAA-----------------------------------------------------------------CA------GC---TGCTGCAACAGCAAG---CC-----------------------------------------------------------------------------------------------------ATTAAA-CAAG----CCT---CACATCTGTA---------TCCCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-CAAG----CCT---CACATCTGTA---------TCCC.2311.00100001000000000000
................................................................................GCACAC------TAC-----------------------------------------------------------------------------------------------------------CAACA---------------------A------CCGCAGGCGC---------T.................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CAA-----------------------------------------------------------------CA------GC---TGCTGCAACAGCAAG---CC-----------------------------------------------------------------------------------------------------A............................................2511.00100000100000000000
.......................................................................................................................................................................................................................................................................................................................A---------------GC---AAC---AA---------C---------------------------------------------------AACAGCAGCAA-----------------------------------------------------------------C..................................................................................................................................................................................21161.0016000016000000000000
...AG---C---GGGCACAGCAGCAG---------------------CAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000100000
.....................................................................................................................................................................................................................................................................................................................GCA---------------GC---AAC---AA---------C---------------------------------------------------AACAGCAGCA.....................................................................................................................................................................................................................................................21200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................GCA---------------GC---AAC---AA---------C---------------------------------------------------AACAGCAG.......................................................................................................................................................................................................................................................19200.05100000000000100000
droSec2
AGCTG-GACA---------ACAGCAG---------CAACA---------AC---CACC-CA--------------------------------------CCGACC---------GCAGCAGCAGCCGC------------------AGC------------------------------TGCCGTAGC---------------AGTAGCAGC---------------------------------------------------------------------------------A---AC---AACTGCAGCA---------------------AC---AG---------C---------------------------------------------------AGCCGCAGCAAC-----------CAACAACAGC------GCTTCCTT-----------------CAGCAGCAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAATAGCAA----CAACAGCAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AGCCG---C------------AGCACGGCGGCTAT------------CAGC-AGCAAGCTG---CCAT------------G----------------------------------------------------------------------------ATGTCACAACAGCAGCAGCAATTGCTCAGCC---------------AGCAGCAGC---------------------------------------------------------------------------------AGCAGTCGCACCA---------------------------CC---AG---------C---------------------------------------------------AGCAGCAGCAACATGCCGCTGCCTACCAGCAGCACAACATCTATGGC-----------------------CAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCAA----CAGCAGCATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................CAGTCGCACCA---------------------------CC---AG---------C---------------------------------------------------AGCAGCAGCA.....................................................................................................................................................................................................................................................2614.00400000000004
............................................................................................................................................................................................................GCAGCAGC---------------------------------------------------------------------------------AGCAGTCGCACC...............................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
droEre2
TTCCA-G-C------------AGCAA--------------------------------------------------------------------------------------------CAGCAG------------------------------------------------------------------------------C---A------ACAG------CTGCAACAGCAGCAGCAGCAGCAGCAGCAGCA------GCA---G------------CT---------------GC---AACAGCAGCAGCAGCAGCAGCAGC------AAC---A--------------------------------------------------------------------------------------------------------------------------------------------------ACAGC------AGCAGCAACAGGCAGCT-----CAATCAGTGCCATGGCGCACCCAAC-----------------GTGCTCAGCC--------------------------------------------------------------------T--------GGAGCGCAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGGCAGCT-----CAATCAGTGC................................................................................................................................2511.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGC------AGCAGCAACAGGCAGCT-----..........................................................................................................................................2211.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGGCAGCT-----CAATCA....................................................................................................................................2011.0010001000
....................................................................................................................................................................................................................................................................................................................................GC------AAC---A--------------------------------------------------------------------------------------------------------------------------------------------------ACAGC------AGCAGCAACAGGC...................................................................................................................................................2420.5010100000
..........................................................................................................................................................................................................................................................CAGCA------GCA---G------------CT---------------GC---AACAGCAGCA........................................................................................................................................................................................................................................................................................................................................................2330.3311000000
..........................................................................................................................................................................................................................................................CAGCA------GCA---G------------CT---------------GC---AACAGCAG..........................................................................................................................................................................................................................................................................................................................................................2140.2511000000
.............................................................................................................................................................................................................................................................................................................................................AC---A--------------------------------------------------------------------------------------------------------------------------------------------------ACAGC------AGCAGCAACAGG....................................................................................................................................................2080.1311000000
.............................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCA------GCA---G------------CT---------------GC---..................................................................................................................................................................................................................................................................................................................................................................26200.0510100000
..........................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGC------AAC---A--------------------------------------------------------------------------------------------------------------------------------------------------ACAGC------AGC.............................................................................................................................................................24200.0511000000
.......................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGC------AAC---A--------------------------------------------------------------------------------------------------------------------------------------------------ACAGC------AGCA............................................................................................................................................................28200.0511000000

Generated: 05/16/2015 at 08:58 PM