dvi_1964

Name	Class	Family	Strand
(CAT)n	Simple_repeat	Simple_repeat	+
TART_DV	LINE	Jockey	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TCGAACAGCTCCTCGGGCAACAGTTCGCCCGCCAAGGCGTATCTGCATCATCATCTACACCATGGCGCCCACTCGCCACTTGCCCATCATCATCATCATCATCATTCGCTGCAGCTGCACCATACGGCGCCGCCCTCGCCACTGGCGTCAGTGCGCCACCAACAACAACAACAGCTTCAGCAACAGCAACAGCATCAACAGCAACAACAGCTTTCGGGTGCTTCGCCCCCACCCGGCGGCTGTCTGGCAGT *********************************************************************************.....((.................((((.(((((........((((.(((...((((...))))...)))))))..............))))).))))............))..****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060669 160x9_females_carcasses_total	SRR060658 140_ovaries_total	SRR060678 9x140_testes_total	M047 female body	SRR060671 9x160_males_carcasses_total	V116 male body	SRR060665 9_females_carcasses_total	SRR060670 9_testes_total	SRR060672 9x160_females_carcasses_total	SRR060682 9x140_0-2h_embryos_total	SRR060685 9xArg_0-2h_embryos_total	SRR060686 Argx9_0-2h_embryos_total	SRR060687 9_0-2h_embryos_total
.....................................................................................................................................................................................................ACAGGAACAACAGCTTTCG...................................	19	1	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TCTACACCATCGCGCTGACT..................................................................................................................................................................................	20	3	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CAACAACGGCTTCCTGGTGCT.............................	21	3	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CAGCATCAACAGCAACAACA..........................................	20	0	9	0.11	1	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................TCTGCAACAGCAACAGCATCA......................................................	21	1	9	0.11	1	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................ATTCGCGGCTGATGCACCA.................................................................................................................................	19	3	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	1	1
........................................................................................................TTCCCTGCCGATGCACCAT................................................................................................................................	19	3	18	0.06	1	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................CCATCATCATCATCATCATCA...................................................................................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................CATCATCATCATCATCATCA...................................................................................................................................................	20	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................CAGCAACAGCAACAGCATCA......................................................	20	0	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................ATTCCCTGCCGATGCACCA.................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................GCAACAGCATCAACAGCAAT..............................................	20	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0
.......................................................................................................ATTCGCGGCCGATGCACCA.................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................ATCATCATCATCATCATC....................................................................................................................................................	18	0	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12726:1917988-1918238 +	dvi_1964	TCGA-ACAGCTCCT------CGG---GCAACAG---TTCGCCCGCCAAGGCGTATCTG--------------------------------------------CA----------------------------------------------------------------------------TCATCATCTACACCATGG----------------CGCCCACTCGC-------------CACT----------------TGCC-------------------------------------------------------------------------------------------------------------------------------CATCATCATCATCATCATCATTCGC------------TGC---A------------------------------------------------------------------------------------------------------------------------------GCTGCA------CCATACGGCGCCGCCCTCGCCACTGGCGTCAGT---------GCGCCACCAACAACAA---------------------------------------CAACAGCTTCAGC---------------------AACAGCAA-------------------------------CAGC---------------------------------------ATC------------------------------------AACAGCA------------------------------------------A---------CAACAGCTTTCGGGTGC-TTCG-CCC---------CCACCCGGCGGCTGTCTGGCAGT
droMoj3	scaffold_6473:6572831-6573084 -		TCGA-ACAGCTCCT------CGG---GCAATAG---TTCACCAGCCAAGGCGTATCTG--------------------------------------------CA----------------------------------------------------------------------------TCATCATCTGCATCACGG----------------CACGCACTCGCA--------------------------------TGCGCATCAT---C------------AT--------------------------------------------------------------------CATCATCAT-----------------------------------------------TCGC------------TGC---A------------------------------------------------------------------------------------------------------------------------------GCTGCA------CCATACGGCGCCGCCCTCACCACTTGCCACGGT---------GCGACATCAGCAACAA---------------------------------------CAACAGCAGCAGC---------------------AGCAACAGCAGCAG----------------------CAGCAGC---------------------------------------AGC------------------------------------AGCAGCA------------------------------------------A---------CAACAACTTTCGGGTGC-TTCA-CCC---------CCACCGGGGGGCTGTCTGGCCGT
droGri2	scaffold_15203:862593-862816 +		TCGA-ACAGCTCGT------CGG---GTAACAG---TTCGCCCGCTAAGGCCTATGTG--------------------------------------------CAACA-------------------------------------------------------------------------TCACCATCTGCATCATGG----------------CTCGCATTCGCA--------------------------------TTCGCAT---------------------------------------------------------------------ACGTTGCACCAT--------CATCATCAC-----------------------------------------------TCGC------------TGC---A------------------------------------------------------------------------------------------------------------------------------GCTGCA------CCACACAGCGCCACCCTCGCCACTCGCCTCGAT---------GCGTCATCAACAACAG---------------------------------------CAACAG-------------------------------------------------------------------------------------------------------------------------------------------------------CA--A------------------------------------------A---------CAACA----TCGGGCGC-CTCG-CCA---------CCCCCCGGGGGTTGTCTGGCTGT
droWil2	scf2_1100000004921:3543667-3543870 -		GA---GCTATTTCT------CGG---ACAACAG---TTCGC--------------------------------------------------------AGCAGCAGCAACAACA----------------------------------------------------------------------CCAG------------------------------------------------------------------------------------CAGCAACATCTCTTGGAGCA-------------------------------------------------------GCAACATT------------------------------------------------------------TGCAATATCAACATC---AGCAGCAA------------------------------------------------------------------------------------------------------------------------------------TATGCATTGCCCCATCAGCAACAAGTGGCCGG---------G---CATCAGCAGCAA---------------------------------------CCACAG---------------------CAACAGCAACAGCAGCAA-------------------------CAA------------------------------------------------------------------------------------CAGCA------------------------------------------GCAGCAGCAACG--AGTTGTCAG------------------------------------CGATTTTGC
dp5	XL_group3a:2578089-2578294 -		TCGA-ACAGTTCCC------CGG---GTGGCGG---ATCACCC---GGGGGCTACATC--------------------------------------------CA----------------------------------------------------------------------------TCACCACATGCATCATGG----------------ATCCCC-----------------------------------------GCTCCACCACCAGC-----------------------------------------------------------------------------------TGCAT-----------------------------------------------CCCT------------TCC---A------------------------------------------------------------------------------------------------------------------------------GCTGCA------TCACACGGCTCCGCCCTCGCCCCTGGCCGCCGTTCGCAGC------CATCCGCACCCG---------------------------------------CAACAGCAGCAGC---------------AGCAGCAGCAGCAT----------------------------CCA------------------------------------------------------------------------------------CATC--------------------------------------------------------------------------------------------CAGCGGGATGCCCGGCCGT
droPer2	scaffold_12:1195041-1195299 -		CG-A-CAAGCTCTT------CTG---GCAGAAG---CT------------------------------------------------------------------------GCG----------CTTCGCCCT-----------------------GCCAGACGTCT------------------CATCCGCCGCACAG----------------CGCTCCGTCGCAGGACAGTCCTGCCACGTGCCCATCAACCATGCTGCCTACCAT---C------------AT--------------------------------------------------------------------CACCACCAT-----------------------------------------------GTGC------------ACC---A------------------GCAGGCCCTTCCGC---TGCCCCTGCCCCATCCC--------------------CATCCCCATTCCGGC-------------------------------------------------------------------------------------------------CACCATCATCAG---------------------------------------C---------------------------------AGCAGCAGCAG-------------------------CAA---CAGCA---------GC------------------------AGCAGCAGTTTATGCTTCCGCCTCCCC----------------------------------------------------------------------------------------------------------------CCCAGCAGCCCGGCAGC
droAna3	scaffold_12929:526500-526754 -		TCGG-CGGGCTCTCCATCACCGG---GCAGTGG---ATCCCCAGCCGCCGCCTTCCTC-----------------------------------------CAGCAGCAGCAGCA-------------------------------------------------------------------TCAGCATCTGCATCATGG----------------ATCTCCG--------------------------------------------------------------------CT-------------------------------------------------------GCACCACC------------------------------------------------------------TGCAACTGCACCACC---ATCATCATC---------------------------------------------------------------------------------------------A---------------------------TCA------TCACACGGCGCCGCCATCCCCGCTGGCTGCTGTTCGCAGC--GCCGCCTTGGCGACTG---------------------------------------GAACGGTTGCAGG---------------------ATCCGGAT----------------------------CGG---GGTC------------------------------------AG---------------------------------------GATCG------------------------------------------G---------GAGCTTGCT--------------CTG---------CCATGTGCTGTTCGCCGGGCGGT
droBip1	scf7180000395565:12520-12721 +		AACA-GCAGCAGCA------GGC---CCACCAG---AAGGC--------------------------------CAAGCA---GCT----------GCAGCAGCAACAACAGCATCTGGGCATGTCGCCACCGCCCAGCCAG----------------------------------------------------------------------------------------------------------------------------------CAGC-----------------------------------------------------------------------------------AGCAG--------------------------------------------CACTCCC------------AGC---AGCAGCAACAACAACAGCAG---------------------------------------------------------------------------------------------------------------------CA----------------GGCCCATCAGCAACAG-----------GC---------------------------------------CCATCAGCAGCAACAACAA---------------------CACCAGCAGCAGCAG----------------------------CAG---C---------------------------------------AGC------------------------------------AACAACA------------------------------------------A---------CAACAGCC-----------------------------------------------GTC
droKik1	scf7180000302517:750632-750835 +		CTGC---T---------------------------------------------------------------------------------------GCATCAGCAGCAACAGCA-------------------------------------------------------------------GCAG---------------------------------------------------------------------------------------CATCCGCACCCCCATCCGCATCCGCACTCGCATCCGCACTCGCACACGCACCCGCATTCACA--------------------------------------------------------------------------------------------------------------------------------------------------------CTCC--------------------------------------------------------------------------------------------------------CACACCACCACCCACAGCCACTCCCACCAGCAACAA---------------------------------------CAACAA---------------------CAACAGCAGCAGCAG----------------------------CAA---CAGCAACAACAGCAGCAGCCACCCCTAAGCCCGCC------------------------GCCGCCCC----------------------------------------------------------------------------------------------------------------CGCAGC--------TG-
droFic1	scf7180000453982:48535-48796 -		ACCA-GCAGCAACA------GCA---GCAACAG---TTGATCTCAT-------------------------------------------------------------------------------------A-----------------------TCCCGCTGTTGCAGCCGTGACCACATCATCGCCGGCAGGATCG----------------C-CGCACTCGCA--------------------------------TCCCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCCATCATGCACCATCCCTGCACGGAGGCAGTCGATCGGGCAGCATCACCAGCACGGCCAG-------------------------------CGCGGGC----------ATCACCATCCT------GAGTCACCAGTTCTAC---------------------------------------CCACAG---------------------CAACAGCAACAGCAGCAACAT----------------------CAGCAAC---------------------------------------AGC------------------------------------AACAGCA------------------------------------------A---------CATC---------------------G---------CCATCCGG-CGCTGACTGGCGG-
droEle1	scf7180000490993:952038-952251 -		GA---CCACCTCCT------CGG---GCAC--------------------------------------------------GCC--CCA--------------GATCATCATCACCCGAACCC-----TACCCTCCAGTCAGCACTTGTCGCGTCG----------------------------CCAT------TCGGC----------------CAGTCCCTCGGC--------------------------------CCTGCACCAC---T------------AT--------------------------------------------------------------------C-----------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAGCAACAA---------------------------------------CAACAACAACAGCAGCAGCAGCAGCAACCACAGC---GA-------------------------------CAACAGC------------AATCGCCAC---------CACC------------------------GCTGCACC------------ACCAGCA------------------------------------------ACAGCAG----------------------------------------------CAGCAACATGTCCGC
droRho1	scf7180000780028:103768-104001 +		TCCA-GCAGCTGGA------GGA---GGAGCGC---TCCAC-GCCCACGGCCCACCTA------------------------------------C--AGCAGCAGA-------------------------------------------------------CGACGCCCACGCCGC-------AGGC-----------TACGCCCACGCCACAGGTCACATCCGCA--------------------------------GCCACACC------------------------------AGCCAAATCAG-----------------------------------------------CGCCATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCCACCAGCAACAT---------------------------------------CAACAGCAGCAGC---------------------AGCAGCAGCAGCAG----------------------ACCCAGC---------------------------------------AGC------------------------------------AACAGCA---------GGAC--------ATTGTGGCCGCTGCAGCGGCGGCAGC----------------------------------------------GGCGGCTATCCAACTGC
droBia1	scf7180000302428:2577756-2577984 +		TCCA-GTAGCTCCT------CCA---GTTGCCG---TTGCTCC-----------------------------------A---GTG----------GCAACCGCATCAGCAGCAGCCGCAGCCGTTGTGCCCGCCCA-GCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGG------------------------------------------------------------CGCA------------------------------------------TCCACACCAGGCCCAGATCCTGGCC--------------------CATACGCACGTAGCCCA-------CCAACAACAGCA---------------GCAGC---------------------------------------------------------AACAGCAACAACAACAGCAGCAGCAGCAACAGCAGACGCTTCAGCAGCATCTC------------------------------------------CAC----------------------C---------------------------------AGC------------------------------------------------AGCAGCA------------------------------------------ACAGCAG---CAGC---------------------------------------------------AG-
droTak1	scf7180000415863:485663-485972 +		CGGC---TGCTCA-------------ACAGCAG---GCTGCCCAAC--------------------------------AGGCG--GCAC--------ATCAGCAGCATCAACA------------------------------------------------GCAAGTGGCCGCCCA-------GCAT-----------CAGCAGCAGGCC---------------------------------------------------------------GC-----------------------------------------------------------------------------------AGTGGCTGCC---------------------CATCAGCAGCAGCAACAGCAGTTGC------------AGCAGCAGCAGCAA---------------------------------------------CTCCTGCAGTTGTCCATCC-----AGCAGGCGGCTCA-------CCATCATCAGCAGGAGCAGCATCGCCA---G----------------------------------C-----------------------AGCAGCAGCAGCAACACCA------------------G------------CAGCAG---------------------C---------AA-------------------------------CAG---C------------------AGC---------AGCA------------------------GCAGCATC------------ACCAGCAGCAACAGCAGGGTCATCCTCAGGCGCCGCCGCCACAGCAGCAA---------CAGC----------------------------------------AGCCG-CCGCCAAT
droEug1	scf7180000409462:2883654-2883873 +		TGTGCACCGATAAT------CTG---GTGTTGG---CGCCACCGCCG---CAGTTCTGCGATTGCAACGATGCCAAGCACGCG--CCG-----------CAGCCGCATCTGC------------------CAACTAGC----------------------------------------------------------------------------------------------------------------------------CAATAC---C--------------------------------------------------------------------------------------A--------------------------------TCCACAGCAGCAA------CAGC------------AAC---A------GCAGCATCAGCAG---------------------------------------------------------------------------------------------------------------------CAG----------------------C-----------------------AGCA---ACAG---------------------------------------CAGCAG---------------------C------AGCAGCAACTGCAACAGCAACTGCAGCAGCAACAAA----------------------------------TGCTGCA------------------------GATGCACC----------------------------------------------------------------------------------------------------------------AGCGGCTGTCTGGCGG-
dm3	chrX:12609109-12609297 -		TCGA-GCAGCAGCA---------------GCAG---TATGC--------------------------------GAAGCAGGCG--GCTCATCTGC--AGCAGCAGCAGCAGCA-------------------------------------------------------CCA---------------------------------------------------------------------------------------GTCGCACCAA---C------------AGCAGCAGCAGCAGCAGCAACAGGACCAACGCACCAACCTGCATCTGCAAATC----------------------------------------------------CATCACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------CCACCA---ACAG---------------------------------------CAGCAG---------------------C------AGCAGCAGCAGCAG----------------------CAGCAAC---------------------------------------AAC------------------------------------AACAGCA------------------------------------------A---------CAGC---------------------------------------------------AGC
droSim2	x:11964693-11964895 -		AGTC-GCACCAG------------------------------------------------------------------------------------------CAGCAGCAGCA-------------------------------------------------------------------------ACAGGACCAACG----------------CACCAACCTGCA--------------------------------TCCGCAA---------------------------------------------------------------------ATC----------------------------------------------------CATCACCACCACCAACAGCA------------------GC---A---------------------------------------------------------------------------------------------------------------------------GCAGCAACAGCAGCAG----------------------C--------------------AGCAGCAACAGCAG---------------------------------------CAACAGCAGCAG---------------CAACAGAAACAGCAGCAACAT------------------CATA----------------------------------TGCAGCAGCAGCAG---------------------------------------CAGCA------------------------------------------G---------CAACAACCTTTGTCA-CCACCT-CAC---------CC-----------ACCCGGCAGC
droSec2	scaffold_4:2908046-2908255 +		AGGA-GCTGCAGTT------CGA---GCAGCAT---CAGCC--------------------------------GCACCA---GTC----------GCATCAGCAACATCAGCA-------------------------------------------------------------------GCAG---------------------------------------------------------------------------------------CAGCTGCAGCATCAGCAGCA-------------------------------------------------------GCAGCAGC------------------------------------------------------------TGCAGCATCAGCAGC---AGCAGCAAC---------------------------------------------------------------------------------------------ATCAGCAGCAACAAAATCAGCA---G----------------------------------C-----------------------AGCAGCAGCTACAACAGCA------------------A------------CATCAG---------------------C---------A----------------------------------------------------GCAGCAAC---------AGCT------------------------GCAGCATCAGCAGCAGCATCAGCAGCA------------------------------------------A---------CAT---------------------------------------------------CAGC
droYak3	X:11972523-11972746 -		CCGC-ACGGCATCT------ACG---GCACCAA---GA---------------------------------------------------------------------------------------------------------------------------CGATGACGGCACCGC-------ACAA-----------CGGCTTCATGAC---------------------------------------------------------------GC-----------------------------------------------------------------------------------TGCAGCATCCCAAGTCGCGCAACCTGGCGCTCATCGCCACCGCCAATAGCAGTCGC--------------------CAGCACCAGCACCAGCAT---------------------------------------------------------------------------------------------------------------------CA---------------------------------------------CCACCA---ACTG---------------------------------------CAGCAG---------------------C------ATCAGCAGCAGCAG----------------------CAACAGC---------------------------------------AGC------------------------------------AGCAGCA------------------------------------------A---------CATC---CGCTGGCCAC-CACATCGC---------CCTTCC---TGCCC-GCACCGGT
droEre2	scaffold_4845:16335792-16336004 +		CGGC---T---C---------GGGGGGC---TTTCATCCGC---------ACTATCAG--------------------------------------------CA---GCACCA----------------------------------------------------------------------CCAT------CAGCG----------------CAGCCACTCGGC--------------------------------GACGCACCAC---A------------AC--------------------------------------------------------------------CACCACCAG-----------------------------------------------AAGCGGCATCATACGCAGC---AACAGCAGCAGCAACAGCAA---------------------------------------------------------------------------------------------------------------------CA---------------------------------------------CACCCA---ACAG---------------------------------------CAGCAG---------------------C------AGCAGCAACAACAA----------------------CATCAGC---------------------------------------AGC------------------------------------AGCAGCA------------------------------------------ACATCAG---CACC------AGAATGG-CTCC-CTCTGTTCGTCG------CTCCTC--------TG-

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TCGA-ACAGCTCCT------CGG---GCAACAG---TTCGCCCGCCAAGGCGTATCTG--------------------------------------------CA----------------------------------------------------------------------------TCATCATCTACACCATGG----------------CGCCCACTCGC-------------CACT----------------TGCC-------------------------------------------------------------------------------------------------------------------------------CATCATCATCATCATCATCATTCGC------------TGC---A------------------------------------------------------------------------------------------------------------------------------GCTGCA------CCATACGGCGCCGCCCTCGCCACTGGCGTCAGT---------GCGCCACCAACAACAA---------------------------------------CAACAGCTTCAGC---------------------AACAGCAA-------------------------------CAGC---------------------------------------ATC------------------------------------AACAGCA------------------------------------------A---------CAACAGCTTTCGGGTGC-TTCG-CCC---------CCACCCGGCGGCTGTCTGGCAGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---------------------------------------ATC------------------------------------AACAGCA------------------------------------------A---------CAACA.....................................................	20	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................C-------------------------------------------------------------------------------------------------------------------------------CATCATCATCATCATCATCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................CATCATCATCATCATCATCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---------------------AACAGCAA-------------------------------CAGC---------------------------------------ATC------------------------------------A....................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA-------------------------------CAGC---------------------------------------ATC------------------------------------AACAGCA------------------------------------------A---------T.........................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................ATCATCATCATCATCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TCGA-ACAGCTCCT------CGG---GCAATAG---TTCACCAGCCAAGGCGTATCTG--------------------------------------------CA----------------------------------------------------------------------------TCATCATCTGCATCACGG----------------CACGCACTCGCA--------------------------------TGCGCATCAT---C------------AT--------------------------------------------------------------------CATCATCAT-----------------------------------------------TCGC------------TGC---A------------------------------------------------------------------------------------------------------------------------------GCTGCA------CCATACGGCGCCGCCCTCACCACTTGCCACGGT---------GCGACATCAGCAACAA---------------------------------------CAACAGCAGCAGC---------------------AGCAACAGCAGCAG----------------------CAGCAGC---------------------------------------AGC------------------------------------AGCAGCA------------------------------------------A---------CAACAACTTTCGGGTGC-TTCA-CCC---------CCACCGGGGGGCTGTCTGGCCGT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC---------------------AGCAACAGCAGCAG----------------------CA........................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA---------------------------------------CAACAGCAGCAGC---------------------AGCAACAGC.....................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGC---------------------AGCAACAGCAGCAG----------------------CA........................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA---------------------------------------CAACAGCAGCAGC---------------------A.............................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------AGCAACAGCAGCAG----------------------CAGCA.....................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---------------------------------------AGC------------------------------------AGCAGCA------------------------------------------A---------CAACAAC...................................................	23	20	0.05	1	0	0	0	0	1	0

droGri2

TCGA-ACAGCTCGT------CGG---GTAACAG---TTCGCCCGCTAAGGCCTATGTG--------------------------------------------CAACA-------------------------------------------------------------------------TCACCATCTGCATCATGG----------------CTCGCATTCGCA--------------------------------TTCGCAT---------------------------------------------------------------------ACGTTGCACCAT--------CATCATCAC-----------------------------------------------TCGC------------TGC---A------------------------------------------------------------------------------------------------------------------------------GCTGCA------CCACACAGCGCCACCCTCGCCACTCGCCTCGAT---------GCGTCATCAACAACAG---------------------------------------CAACAG-------------------------------------------------------------------------------------------------------------------------------------------------------CA--A------------------------------------------A---------CAACA----TCGGGCGC-CTCG-CCA---------CCCCCCGGGGGTTGTCTGGCTGT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

GA---GCTATTTCT------CGG---ACAACAG---TTCGC--------------------------------------------------------AGCAGCAGCAACAACA----------------------------------------------------------------------CCAG------------------------------------------------------------------------------------CAGCAACATCTCTTGGAGCA-------------------------------------------------------GCAACATT------------------------------------------------------------TGCAATATCAACATC---AGCAGCAA------------------------------------------------------------------------------------------------------------------------------------TATGCATTGCCCCATCAGCAACAAGTGGCCGG---------G---CATCAGCAGCAA---------------------------------------CCACAG---------------------CAACAGCAACAGCAGCAA-------------------------CAA------------------------------------------------------------------------------------CAGCA------------------------------------------GCAGCAGCAACG--AGTTGTCAG------------------------------------CGATTTTGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------------------------CAA------------------------------------------------------------------------------------CAGCA------------------------------------------GCAGCAGCAACG--......................................................	22	4	0.25	1	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAA-------------------------CAA------------------------------------------------------------------------------------CAGCA------------------------------------------GCAGCAGC............................................................	22	20	0.10	2	0	0	0	2	0
.................................................................................................AGCAGCAGCAACAACA----------------------------------------------------------------------CC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA-------------------------CAA------------------------------------------------------------------------------------CAGCA------------------------------------------GCAGCAGC............................................................	20	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAA-------------------------CAA------------------------------------------------------------------------------------CAGC...............................................................................................................	19	20	0.05	1	0	0	0	1	0

dp5

TCGA-ACAGTTCCC------CGG---GTGGCGG---ATCACCC---GGGGGCTACATC--------------------------------------------CA----------------------------------------------------------------------------TCACCACATGCATCATGG----------------ATCCCC-----------------------------------------GCTCCACCACCAGC-----------------------------------------------------------------------------------TGCAT-----------------------------------------------CCCT------------TCC---A------------------------------------------------------------------------------------------------------------------------------GCTGCA------TCACACGGCTCCGCCCTCGCCCCTGGCCGCCGTTCGCAGC------CATCCGCACCCG---------------------------------------CAACAGCAGCAGC---------------AGCAGCAGCAGCAT----------------------------CCA------------------------------------------------------------------------------------CATC--------------------------------------------------------------------------------------------CAGCGGGATGCCCGGCCGT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---------------AGCAGCAGCAGCAT----------------------------CCA------------------------------------------------------------------------------------CAC................................................................................................................	25	12	0.08	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCG---------------------------------------CAACAGCAGCAGC---------------AGCAGCA.............................................................................................................................................................................................................................................	23	18	0.06	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------------AGCAGCAGCAGCAT----------------------------CCA------------------------------------------------------------------------------------...................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---------------------------------------CAACAGCAGCAGC---------------AGCAG...............................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCG---------------------------------------CAACAGCAGCAGC---------------AGCAG...............................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC---------------AGCAGCAGCAGCAT----------------------------C.........................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0

droPer2

CG-A-CAAGCTCTT------CTG---GCAGAAG---CT------------------------------------------------------------------------GCG----------CTTCGCCCT-----------------------GCCAGACGTCT------------------CATCCGCCGCACAG----------------CGCTCCGTCGCAGGACAGTCCTGCCACGTGCCCATCAACCATGCTGCCTACCAT---C------------AT--------------------------------------------------------------------CACCACCAT-----------------------------------------------GTGC------------ACC---A------------------GCAGGCCCTTCCGC---TGCCCCTGCCCCATCCC--------------------CATCCCCATTCCGGC-------------------------------------------------------------------------------------------------CACCATCATCAG---------------------------------------C---------------------------------AGCAGCAGCAG-------------------------CAA---CAGCA---------GC------------------------AGCAGCAGTTTATGCTTCCGCCTCCCC----------------------------------------------------------------------------------------------------------------CCCAGCAGCCCGGCAGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................AAG---CT------------------------------------------------------------------------GCG----------CTTCGCCCT-----------------------GCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCATCATCAG---------------------------------------C---------------------------------AGCAGCAGC.....................................................................................................................................................................................................................................	22	5	0.20	1	0	0	1	0	0	0

droAna3

TCGG-CGGGCTCTCCATCACCGG---GCAGTGG---ATCCCCAGCCGCCGCCTTCCTC-----------------------------------------CAGCAGCAGCAGCA-------------------------------------------------------------------TCAGCATCTGCATCATGG----------------ATCTCCG--------------------------------------------------------------------CT-------------------------------------------------------GCACCACC------------------------------------------------------------TGCAACTGCACCACC---ATCATCATC---------------------------------------------------------------------------------------------A---------------------------TCA------TCACACGGCGCCGCCATCCCCGCTGGCTGCTGTTCGCAGC--GCCGCCTTGGCGACTG---------------------------------------GAACGGTTGCAGG---------------------ATCCGGAT----------------------------CGG---GGTC------------------------------------AG---------------------------------------GATCG------------------------------------------G---------GAGCTTGCT--------------CTG---------CCATGTGCTGTTCGCCGGGCGGT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

AACA-GCAGCAGCA------GGC---CCACCAG---AAGGC--------------------------------CAAGCA---GCT----------GCAGCAGCAACAACAGCATCTGGGCATGTCGCCACCGCCCAGCCAG----------------------------------------------------------------------------------------------------------------------------------CAGC-----------------------------------------------------------------------------------AGCAG--------------------------------------------CACTCCC------------AGC---AGCAGCAACAACAACAGCAG---------------------------------------------------------------------------------------------------------------------CA----------------GGCCCATCAGCAACAG-----------GC---------------------------------------CCATCAGCAGCAACAACAA---------------------CACCAGCAGCAGCAG----------------------------CAG---C---------------------------------------AGC------------------------------------AACAACA------------------------------------------A---------CAACAGCC-----------------------------------------------GTC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTGC---T---------------------------------------------------------------------------------------GCATCAGCAGCAACAGCA-------------------------------------------------------------------GCAG---------------------------------------------------------------------------------------CATCCGCACCCCCATCCGCATCCGCACTCGCATCCGCACTCGCACACGCACCCGCATTCACA--------------------------------------------------------------------------------------------------------------------------------------------------------CTCC--------------------------------------------------------------------------------------------------------CACACCACCACCCACAGCCACTCCCACCAGCAACAA---------------------------------------CAACAA---------------------CAACAGCAGCAGCAG----------------------------CAA---CAGCAACAACAGCAGCAGCCACCCCTAAGCCCGCC------------------------GCCGCCCC----------------------------------------------------------------------------------------------------------------CGCAGC--------TG-	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACCA-GCAGCAACA------GCA---GCAACAG---TTGATCTCAT-------------------------------------------------------------------------------------A-----------------------TCCCGCTGTTGCAGCCGTGACCACATCATCGCCGGCAGGATCG----------------C-CGCACTCGCA--------------------------------TCCCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCCATCATGCACCATCCCTGCACGGAGGCAGTCGATCGGGCAGCATCACCAGCACGGCCAG-------------------------------CGCGGGC----------ATCACCATCCT------GAGTCACCAGTTCTAC---------------------------------------CCACAG---------------------CAACAGCAACAGCAGCAACAT----------------------CAGCAAC---------------------------------------AGC------------------------------------AACAGCA------------------------------------------A---------CATC---------------------G---------CCATCCGG-CGCTGACTGGCGG-	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GA---CCACCTCCT------CGG---GCAC--------------------------------------------------GCC--CCA--------------GATCATCATCACCCGAACCC-----TACCCTCCAGTCAGCACTTGTCGCGTCG----------------------------CCAT------TCGGC----------------CAGTCCCTCGGC--------------------------------CCTGCACCAC---T------------AT--------------------------------------------------------------------C-----------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAGCAACAA---------------------------------------CAACAACAACAGCAGCAGCAGCAGCAACCACAGC---GA-------------------------------CAACAGC------------AATCGCCAC---------CACC------------------------GCTGCACC------------ACCAGCA------------------------------------------ACAGCAG----------------------------------------------CAGCAACATGTCCGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCCA-GCAGCTGGA------GGA---GGAGCGC---TCCAC-GCCCACGGCCCACCTA------------------------------------C--AGCAGCAGA-------------------------------------------------------CGACGCCCACGCCGC-------AGGC-----------TACGCCCACGCCACAGGTCACATCCGCA--------------------------------GCCACACC------------------------------AGCCAAATCAG-----------------------------------------------CGCCATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCCACCAGCAACAT---------------------------------------CAACAGCAGCAGC---------------------AGCAGCAGCAGCAG----------------------ACCCAGC---------------------------------------AGC------------------------------------AACAGCA---------GGAC--------ATTGTGGCCGCTGCAGCGGCGGCAGC----------------------------------------------GGCGGCTATCCAACTGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCCA-GTAGCTCCT------CCA---GTTGCCG---TTGCTCC-----------------------------------A---GTG----------GCAACCGCATCAGCAGCAGCCGCAGCCGTTGTGCCCGCCCA-GCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGG------------------------------------------------------------CGCA------------------------------------------TCCACACCAGGCCCAGATCCTGGCC--------------------CATACGCACGTAGCCCA-------CCAACAACAGCA---------------GCAGC---------------------------------------------------------AACAGCAACAACAACAGCAGCAGCAGCAACAGCAGACGCTTCAGCAGCATCTC------------------------------------------CAC----------------------C---------------------------------AGC------------------------------------------------AGCAGCA------------------------------------------ACAGCAG---CAGC---------------------------------------------------AG-	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CGGC---TGCTCA-------------ACAGCAG---GCTGCCCAAC--------------------------------AGGCG--GCAC--------ATCAGCAGCATCAACA------------------------------------------------GCAAGTGGCCGCCCA-------GCAT-----------CAGCAGCAGGCC---------------------------------------------------------------GC-----------------------------------------------------------------------------------AGTGGCTGCC---------------------CATCAGCAGCAGCAACAGCAGTTGC------------AGCAGCAGCAGCAA---------------------------------------------CTCCTGCAGTTGTCCATCC-----AGCAGGCGGCTCA-------CCATCATCAGCAGGAGCAGCATCGCCA---G----------------------------------C-----------------------AGCAGCAGCAGCAACACCA------------------G------------CAGCAG---------------------C---------AA-------------------------------CAG---C------------------AGC---------AGCA------------------------GCAGCATC------------ACCAGCAGCAACAGCAGGGTCATCCTCAGGCGCCGCCGCCACAGCAGCAA---------CAGC----------------------------------------AGCCG-CCGCCAAT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TGTGCACCGATAAT------CTG---GTGTTGG---CGCCACCGCCG---CAGTTCTGCGATTGCAACGATGCCAAGCACGCG--CCG-----------CAGCCGCATCTGC------------------CAACTAGC----------------------------------------------------------------------------------------------------------------------------CAATAC---C--------------------------------------------------------------------------------------A--------------------------------TCCACAGCAGCAA------CAGC------------AAC---A------GCAGCATCAGCAG---------------------------------------------------------------------------------------------------------------------CAG----------------------C-----------------------AGCA---ACAG---------------------------------------CAGCAG---------------------C------AGCAGCAACTGCAACAGCAACTGCAGCAGCAACAAA----------------------------------TGCTGCA------------------------GATGCACC----------------------------------------------------------------------------------------------------------------AGCGGCTGTCTGGCGG-	Size	Hit Count	Total Norm	Total
No Reads

dm3

TCGA-GCAGCAGCA---------------GCAG---TATGC--------------------------------GAAGCAGGCG--GCTCATCTGC--AGCAGCAGCAGCAGCA-------------------------------------------------------CCA---------------------------------------------------------------------------------------GTCGCACCAA---C------------AGCAGCAGCAGCAGCAGCAACAGGACCAACGCACCAACCTGCATCTGCAAATC----------------------------------------------------CATCACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------CCACCA---ACAG---------------------------------------CAGCAG---------------------C------AGCAGCAGCAGCAG----------------------CAGCAAC---------------------------------------AAC------------------------------------AACAGCA------------------------------------------A---------CAGC---------------------------------------------------AGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................TATGC--------------------------------GAAGCAGGCG--GCTCATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................GCAACAGGACCAACGCACCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TGCATCTGCAAATC----------------------------------------------------CATCACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------C...................................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................GCAACAGGACCAACGCACCAACCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................AGCA-------------------------------------------------------CCA---------------------------------------------------------------------------------------GTCGCACCAA---C------------AGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---------------------C------AGCAGCAGCAGCAG----------------------CAGCA.....................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................C------------AGCAGCAGCAGCAGCAGCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................AA---C------------AGCAGCAGCAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAG----------------------CAGCAAC---------------------------------------AA..........................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC---------------------------------------AAC------------------------------------AACAGCA------------------------------------------A---------CAGC---------------------------------------------------...	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGTC-GCACCAG------------------------------------------------------------------------------------------CAGCAGCAGCA-------------------------------------------------------------------------ACAGGACCAACG----------------CACCAACCTGCA--------------------------------TCCGCAA---------------------------------------------------------------------ATC----------------------------------------------------CATCACCACCACCAACAGCA------------------GC---A---------------------------------------------------------------------------------------------------------------------------GCAGCAACAGCAGCAG----------------------C--------------------AGCAGCAACAGCAG---------------------------------------CAACAGCAGCAG---------------CAACAGAAACAGCAGCAACAT------------------CATA----------------------------------TGCAGCAGCAGCAG---------------------------------------CAGCA------------------------------------------G---------CAACAACCTTTGTCA-CCACCT-CAC---------CC-----------ACCCGGCAGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAG----------------------C--------------------AGCAGCAACAGCAG---------------------------------------................................................................................................................................................................................................................................................................................	25	20	1.30	26	0	0	0	0	0	26	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................GCAGCAGCA-------------------------------------------------------------------------ACAGGACCAACG----------------CACCAACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...C-GCACCAG------------------------------------------------------------------------------------------CAGCAGCAGCA-------------------------------------------------------------------------ACAGGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAT------------------CATA----------------------------------TGCAGCAGCAGCAG---------------------------------------...................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AGGA-GCTGCAGTT------CGA---GCAGCAT---CAGCC--------------------------------GCACCA---GTC----------GCATCAGCAACATCAGCA-------------------------------------------------------------------GCAG---------------------------------------------------------------------------------------CAGCTGCAGCATCAGCAGCA-------------------------------------------------------GCAGCAGC------------------------------------------------------------TGCAGCATCAGCAGC---AGCAGCAAC---------------------------------------------------------------------------------------------ATCAGCAGCAACAAAATCAGCA---G----------------------------------C-----------------------AGCAGCAGCTACAACAGCA------------------A------------CATCAG---------------------C---------A----------------------------------------------------GCAGCAAC---------AGCT------------------------GCAGCATCAGCAGCAGCATCAGCAGCA------------------------------------------A---------CAT---------------------------------------------------CAGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATCAGCAGCAGCATCAGCA.................................................................................................................	23	4	0.25	1	0	0	1	0
....................................................................................................................................................................................................................................................................................GCAGCATCAGCAGCA-------------------------------------------------------GCAGCAGC------------------------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	10	0.10	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------A------------CATCAG---------------------C---------A----------------------------------------------------GCAGCAAC---------AG...................................................................................................................................................................	21	11	0.09	1	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAC---------------------------------------------------------------------------------------------ATCAGCAGCAAC..........................................................................................................................................................................................................................................................................................................................................................................................................	20	13	0.08	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------------------A------------CATCAG---------------------C---------A----------------------------------------------------GCAGCAAC---------A....................................................................................................................................................................	21	16	0.06	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------CATCAG---------------------C---------A----------------------------------------------------GCAGCAAC---------A....................................................................................................................................................................	18	20	0.05	1	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAG---------------------C---------A----------------------------------------------------GCAGCAAC---------AGC..................................................................................................................................................................	19	20	0.05	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------------------A------------CATCAG---------------------C---------A----------------------------------------------------GCAGCAA...............................................................................................................................................................................	20	20	0.05	1	0	0	0	1

droYak3

CCGC-ACGGCATCT------ACG---GCACCAA---GA---------------------------------------------------------------------------------------------------------------------------CGATGACGGCACCGC-------ACAA-----------CGGCTTCATGAC---------------------------------------------------------------GC-----------------------------------------------------------------------------------TGCAGCATCCCAAGTCGCGCAACCTGGCGCTCATCGCCACCGCCAATAGCAGTCGC--------------------CAGCACCAGCACCAGCAT---------------------------------------------------------------------------------------------------------------------CA---------------------------------------------CCACCA---ACTG---------------------------------------CAGCAG---------------------C------ATCAGCAGCAGCAG----------------------CAACAGC---------------------------------------AGC------------------------------------AGCAGCA------------------------------------------A---------CATC---CGCTGGCCAC-CACATCGC---------CCTTCC---TGCCC-GCACCGGT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCAGTCGC--------------------CAGCACCAGCACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4
..........................GCACCAA---GA---------------------------------------------------------------------------------------------------------------------------CGATGACGGCACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................AGTCGCGCAACCTGGCGCTCATCGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................CAAGTCGCGCAACCTGGCGCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GAC---------------------------------------------------------------GC-----------------------------------------------------------------------------------TGCAGCATCCCAAGTCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG----------------------CAACAGC---------------------------------------AGC------------------------------------AGCAGCA------------------------------------------A---------CATC---...................................................	28	5	0.20	1	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG----------------------CAACAGC---------------------------------------AGC------------------------------------AGCAGCA------------------------------------------A---------CA........................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CGGC---T---C---------GGGGGGC---TTTCATCCGC---------ACTATCAG--------------------------------------------CA---GCACCA----------------------------------------------------------------------CCAT------CAGCG----------------CAGCCACTCGGC--------------------------------GACGCACCAC---A------------AC--------------------------------------------------------------------CACCACCAG-----------------------------------------------AAGCGGCATCATACGCAGC---AACAGCAGCAGCAACAGCAA---------------------------------------------------------------------------------------------------------------------CA---------------------------------------------CACCCA---ACAG---------------------------------------CAGCAG---------------------C------AGCAGCAACAACAA----------------------CATCAGC---------------------------------------AGC------------------------------------AGCAGCA------------------------------------------ACATCAG---CACC------AGAATGG-CTCC-CTCTGTTCGTCG------CTCCTC--------TG-	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................AT------CAGCG----------------CAGCCACTCGGC--------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGCAGC---AACAGCAGCAGCAACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...................................................CTATCAG--------------------------------------------CA---GCACCA----------------------------------------------------------------------CCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---------------------------------------------------------------------------------------------------------------------CA---------------------------------------------CACCCA---ACAG---------------------------------------CAGCAG---------------------C------A.............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATACGCAGC---AACAGCAGCAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
..................................................ACTATCAG--------------------------------------------CA---GCACCA----------------------------------------------------------------------CCAT------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................CCAC---A------------AC--------------------------------------------------------------------CACCACCAG-----------------------------------------------AAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAA---------------------------------------------------------------------------------------------------------------------CA---------------------------------------------CACCCA---ACAG---------------------------------------CAGCAG---------------------C------A.............................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGG-CTCC-CTCTGTTCGTCG------C................	24	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------------------------------------------ACATCAG---CACC------AGAAT...........................................	22	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATACGCAGC---AACAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATACGCAGC---AACAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAA----------------------CATCAGC---------------------------------------AGC------------------------------------A....................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---------------------C------AGCAGCAACAACAA----------------------CATCAGC---------------------------------------............................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAA----------------------CATCAGC---------------------------------------AGC------------------------------------AGC..................................................................................................................	23	2	0.50	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA----------------------CATCAGC---------------------------------------AGC------------------------------------AGCAGCA------------------------------------------AC..................................................................	24	4	0.50	2	0	1	0	0	0	1	0
.....................................................ATCAG--------------------------------------------CA---GCACCA----------------------------------------------------------------------CCAT------CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAA----------------------CATCAGC---------------------------------------AGC------------------------------------AGCAGC...............................................................................................................	24	2	0.50	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAA----------------------CATCAGC---------------------------------------AGC------------------------------------AGCAGC...............................................................................................................	22	6	0.17	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------------------------------------AGCAGCA------------------------------------------ACATCAG---CA........................................................	19	20	0.10	2	2	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------------------------------------AGCAGCA------------------------------------------ACATCAG---C.........................................................	18	20	0.10	2	0	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGC---------------------------------------AGC------------------------------------AGCAGCA------------------------------------------ACA.................................................................	20	20	0.10	2	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAA----------------------CATCAGC---------------------------------------AGC------------------------------------AG...................................................................................................................	18	16	0.06	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAA----------------------CATCAGC---------------------------------------AGC------------------------------------AGCG.................................................................................................................	22	17	0.06	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA----------------------CATCAGC---------------------------------------AGC------------------------------------AGCAG................................................................................................................	18	20	0.05	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---------------------------------------AGC------------------------------------AGCAGCA------------------------------------------ACATCAG---C.........................................................	22	20	0.05	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------------------------------------AGC------------------------------------AGCAGCA------------------------------------------ACATCAG---CA........................................................	22	20	0.05	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------------------------------------AGC------------------------------------AGCAGCA------------------------------------------ACATCAG---C.........................................................	20	20	0.05	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------------------------------------AGC------------------------------------AGCAGCA------------------------------------------ACATCAG---CA........................................................	21	20	0.05	1	1	0	0	0	0	0	0

-26.1	-26.1	-26.0	-26.0

dvi_1964

scaffold_12726:1918038-1918188 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads