ID:

dvi_19524

 Coordinate:

scaffold_13049:11501063-11501213 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.8 -7.7 -7.4

Flybase annnotation

CDS [Dvir\GJ11956-cds]; exon [dvir_GLEANR_11961:3]; intron [Dvir\GJ11956-in]

Repeatable elements

NameClassFamilyStrand
(TC)nSimple_repeatSimple_repeat+
mature
star
  1. scaffold_12726:2246930-2246954 -
  2. scaffold_12875:19484597-19484621 -
  3. scaffold_12875:19979746-19979770 -
  4. scaffold_12928:2132032-2132056 -
  5. scaffold_12928:3098610-3098634 -
  6. scaffold_12928:3219909-3219933 -
  7. scaffold_12928:4825654-4825678 -
  8. scaffold_12932:1588570-1588594 -
  9. scaffold_12963:18922039-18922063 -
  10. scaffold_12970:2110328-2110352 -
  11. scaffold_12970:6906515-6906539 -
  12. scaffold_12970:7372918-7372942 -
  13. scaffold_12970:11670191-11670215 -
  14. scaffold_13047:5711165-5711189 -
  15. scaffold_13047:16781507-16781531 -
  16. scaffold_13049:11251203-11251227 -
  17. dvi_19524  scaffold_13049:11501150-11501174 -
  18. scaffold_13049:18091195-18091219 -
  19. scaffold_13049:21176275-21176299 -
  20. scaffold_13049:21928532-21928556 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGGTGCTGGAAAAGGAGCTGATGCTGGAAACGCTGCAGCAGGTGAACAAGGTAAGTGGACTCTTAAACGCCTGAATGCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCGATACATAAACGTCCATTTCGTATCGGTCGGTGTCAGTATTCGAGTCGTATATCGTGAAAAATTCATATGGTTACCTAATCTTTATAATGTTATATGGCTATTATTGCCTTTTGCATCGTTCGTTGCGCACGTCACGA
*****************************************************************************************................(((.((..(((((.....((.((..........)).))))))).)).)))..********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060659
Argentina_testes_total
 SRR060655
9x160_testes_total
 SRR060683
160_testes_total
 SRR060657
140_testes_total
 SRR060679
140x9_testes_total
 SRR060667
160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060660
Argentina_ovaries_total
 SRR060665
9_females_carcasses_total
 M028
head
 M061
embryo
 SRR060664
9_males_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060666
160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 V116
male body		 SRR060658
140_ovaries_total
 SRR060662
9x160_0-2h_embryos_total
 SRR1106729
mixed whole adult body
 M047
female body
 SRR060687
9_0-2h_embryos_total
....GCTGGAGAAGGAGCTGATGCTG................................................................................................................................................................................................................................. 22 1 1 7.00 7 4 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................GCTGATGCTGGAAACGCT......................................................................................................................................................................................................................... 18 0 1 6.00 6 5 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GCTGGAGAAGGAGCTGATGCTGGA............................................................................................................................................................................................................................... 24 1 1 5.00 5 1 0 1 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................GCTGATGCTGGAAACGCTGC....................................................................................................................................................................................................................... 20 0 1 4.00 4 1 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....GCTGGAGAAGGAGCTGATGCTGG................................................................................................................................................................................................................................ 23 1 1 4.00 4 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CGGTGCTGGAGAAGGAGCT........................................................................................................................................................................................................................................ 19 1 1 3.00 3 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........GAAGGAGCTGATGCTGGAAAC............................................................................................................................................................................................................................ 21 1 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............AGCTGATGCTGGAAACGCT......................................................................................................................................................................................................................... 19 0 1 3.00 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........GAAGGAGCTGATGCTGGA............................................................................................................................................................................................................................... 18 1 2 2.50 5 0 1 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............AGCTGATGCTGGAAACGCTGCA...................................................................................................................................................................................................................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TGATGCTGGAAACGCTGC....................................................................................................................................................................................................................... 18 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............AGCTGATGCTGGAAACGCTGC....................................................................................................................................................................................................................... 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............GAGCTGATGCTGGAAACGCT......................................................................................................................................................................................................................... 20 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TGATGCTGGAAACGCTGCAGCAGGT................................................................................................................................................................................................................ 25 0 1 2.00 2 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................AAACGCTGCAGCAGGTGA.............................................................................................................................................................................................................. 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................GCTGATGCTGGAAACGCTGCAG..................................................................................................................................................................................................................... 22 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TGATGCTGGAAACGCTGCA...................................................................................................................................................................................................................... 19 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........AAGGAGCTGATGCTGGAAACGCT......................................................................................................................................................................................................................... 23 0 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......TGGAGAAGGAGCTGATGCTG................................................................................................................................................................................................................................. 20 1 1 2.00 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....GCTGGAGAAGGAGCTGATGCTGGAAAC............................................................................................................................................................................................................................ 27 1 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................CTGATGCTGGAAACGCTGC....................................................................................................................................................................................................................... 19 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TGGAGAAGGAGCTGATGCT.................................................................................................................................................................................................................................. 19 1 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GCTGGAGAAGGAGCTGATG.................................................................................................................................................................................................................................... 19 1 3 1.33 4 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........GAAGGAGCTGATGCTGGAA.............................................................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GCCGGAAAAGGAGCTGATGCTGGAAAC............................................................................................................................................................................................................................ 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............GAGCTGATGCTGGAAACGCTGC....................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................ATCGGTCGGTGTCAGTATTCGA.............................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................ATGCTGGAAACGCTGCAGCAGGTGA.............................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................AACGCTGCAGCAGGTGAACAAGG........................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................CTGGAAACGCTGCAGCAGGT................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TGGAAACGCTGCAGCAGGTGAA............................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............GGAGCTGATGCTGGAAACGC.......................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........GAAGGAGCTGATGCTGGAAACGCT......................................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............AGCTGATGCTGGAAACGCTGCAGCA................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........AGAAGGAGCTGATGCTGGAAAC............................................................................................................................................................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............AGGAGCTGATGCTGGAAACG........................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................CTGATGCTGGAAACGCTGAAG..................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GCTGGAAACGCTGCAGCAGGTGAA............................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....CTGGAGAAGGAGCTGATGCTGGAAAC............................................................................................................................................................................................................................ 26 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............AGGAGCTGATGCTGGAAACGC.......................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GGTGCTGGAGAAGGAGCT........................................................................................................................................................................................................................................ 18 1 3 1.00 3 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............GGAGCTGATGCTGGAAACGCTGC....................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............GAGCTGATGCTGGAAACGC.......................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........GAAGGAGCTGATGCTGGAAACGC.......................................................................................................................................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GGAGAAGGAGCTGATGCTGGA............................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GGTGCTGGAGAAGGAGCTGATGCTGG................................................................................................................................................................................................................................ 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........GAAGGAGCTGATGCTGGAAACGCTG........................................................................................................................................................................................................................ 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........GAAGGAGCTGATGCTGGAAA............................................................................................................................................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............GGAGCTGATGCTGGAAACGCTGCA...................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GCTGGAGAAGGAGCTGATTCTGG................................................................................................................................................................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................AACGCTGCAGCAGGTGAACAAGGA....................................................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........GAAAAGGAGCTGATGCTGGA............................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............GGAGCTGATGCTGGAAACGCTGCAG..................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CGGTGCTGGAGAAGGAGCTGATGC................................................................................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........GAAGGAGCTGATGCTGGAAACGCTGC....................................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................GCTGGAAACGCTGCAGCAGGT................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................ATGCTGGAAACGCTGCAGC.................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........AAGGAGCTGATGCTGGAAACGCTGC....................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GGTGCTGGAGAAGGAGCTGATGCTG................................................................................................................................................................................................................................. 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GTGCTGGAAAAGGAGCTGATGCC.................................................................................................................................................................................................................................. 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................GCTGATGCTGGAAACGCTGCA...................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TGGAGAAGGAGCTGATGC................................................................................................................................................................................................................................... 18 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....GCTGGAGAAGGAGCTGATGC................................................................................................................................................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....CTGGAGAAGGAGCTGATGC................................................................................................................................................................................................................................... 19 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................CTGGAAACGCTGCAGCAG.................................................................................................................................................................................................................. 18 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TGCTGGAGAAGGAGCTGAT..................................................................................................................................................................................................................................... 19 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTATTGCCTTTTTCTTCGTTC................ 21 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....TCTGGAGAAGGAGCTGAGGCTGGA............................................................................................................................................................................................................................... 24 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GCTGGAGAAGGAGCTGAT..................................................................................................................................................................................................................................... 18 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................AATATTAAACGCCTGAATGCC............................................................................................................................................................................ 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................ATTATTGCCTTTTTCTTCG................... 19 2 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................GCAGCAGGTGTCCAAGGT....................................................................................................................................................................................................... 18 2 20 0.10 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...............................GCTGAAGAAGGTGAACAA.......................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GAGAGAGAGAGAGAGAGAGAGCGCG......................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GCCACGACCTTTTCCTCGACTACGACCTTTGCGACGTCGTCCACTTGTTCCATTCACCTGAGAATTTGCGGACTTACGTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCGCTATGTATTTGCAGGTAAAGCATAGCCAGCCACAGTCATAAGCTCAGCATATAGCACTTTTTAAGTATACCAATGGATTAGAAATATTACAATATACCGATAATAACGGAAAACGTAGCAAGCAACGCGTGCAGTGCT
**********************************************************************************************................(((.((..(((((.....((.((..........)).))))))).)).)))..***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 SRR060680
 9xArg_testes_total
 V116
male body		 SRR060667
160_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060661
160x9_0-2h_embryos_total
 M047
female body
 SRR060684
140x9_0-2h_embryos_total
............................................................................................................................CATGTAAAGCATACCCAGCCAC......................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.......................................TCCACTTGTTCCATTCACCTGAGAAT.......................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................................TATGCCAATGGTTTAGAAAT..................................................... 20 2 2 0.50 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................ATCACGGAAGTCGTAGCAAG................ 20 3 3 0.33 1 0 0 0 0 1 0 0 0
...........................................................................................................................ACATGTAAAGCATACCCAGCC........................................................................................................... 21 3 3 0.33 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................TAGCACTTCTTAGGTATA..................................................................... 18 2 15 0.07 1 0 0 0 0 0 1 0 0
......................................................CACCTGAGCACTTGCGAAC.................................................................................................................................................................................. 19 3 16 0.06 1 0 0 0 1 0 0 0 0
.............................................................................................CTCTCTCTCTCTCTCTCGCGC......................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0
...................................................................................................................................................................ATCGCACTTCTTAGGTATA..................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:11501013-11501263 - dvi_19524 CGGTGCTGGAAAAGGAGCTGATGCTGGAAACGCTGCAGCAGGTGAACAAGGTAAGTGGA----C-------------------------------------TCTTA-----AACGCCTGAATGCACAG---------------------AGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCGATACATAAAC--------------GTC---------------------------C-----ATTTCGTATCGGTCGGTGTC-----AGTATT--CGAG-------TCGTATATCGTGAAAAATTCATATGGT---------------------------------------------------TACCTAATCTTTATAATGT-TATATGGCTATTATTGCCTTT-TGCATCGTTC-GTTGCGCACGTCACGA-
droMoj3 scaffold_6680:9327913-9328225 + CGGTGCTGGAGAAGGAGCTAATGCTGGAAACGCTGCAGCAGGTGAGCAAGGTAAGTGAC------------------------------------------TGTTG-----AACGCCTCAATGCGCAGCT-AAACAAGATTT---GATGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGCAATAGA-------------------GAGAGAGAAG----CAGATTGGGGGAACAAC-----ATTTCGTATCAGTCGGTGTC-----AGCTTTTGCGCGTCGCTTATCG-CA---TATACATA---TATACGTACAT-----------ATG-------TC-------TAA--AATTTATATGATTACCTAATGTTCATAATATTTTTATGGCCGTTATTGCTTTT-TGCATCGTTC-GTTGCGCACGCCAAAGC
droGri2 scaffold_15110:7851850-7852077 + CGGTACTGGAGAAGGAGCTAATGCTAGAAACGCTGCAGCAGGTGAACAAGGTAAGTCTG----G--C---G-----------------A---------T--TGTTG-----CACGCCTCAATGCACACCTTAGATAAGAAATAGAGATAAGAGAGA---AGGGAAAGGGGGAAAGGGAGCTATAGA-------------------GTCAAAG--------------------------------------------------------------------------------------------------------------------------------------TAC--AACTTATAAAGTTAGGTAATGCCTACAATTT-GATATGGTCATTATTGCTTTT-TGCATCGTTC-GTTGCGCATGCCACA--
droWil2 scf2_1100000004511:3771600-3771822 + CGGTGCTAGAGAAGGAGCTAATGCTGGAGACTCTGCAGCAGGTGAATAAGGTAAGTTCC----A--A---A-----------------G---------T--TCCAAATCGATAGGCCTCAATGATCATCATAATC----------------------------------------------------------------------ATCAGACAACGCCC----------------CATTAGGTTTCGTATCATTTGGTACC-----TGAAAC--------------CATATTTTGT------TTT-TTTCGT--TTATTTTTC----GTGT---------------------------TTTGTTAGGTAA--------------------------TTGCCTCTGCGTTTCATTC-GTTGCACACGCCAACA-
dp5 XR_group6:8074728-8074783 + CGGTGCTGGAGAAGGAGCTGATGCTCGAGACCCTGCAACAGGTGGGAAAGGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_27:381050-381105 - CGGTGCTGGAGAAGGAGCTGATGCTCGAGACCCTGCAACAGGTGGGAAAGGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13337:12984167-12984394 + CTGTGTTGGAGAAGGAGCTGATGCTCGAGACTCTGCAGCAGGTGGGCAAGGTAAGTTGA----ACCCATTT-AG--TTATATACACAC----AA-------------------------------------------------------------------------------------------AT----ACATATATCCTAT------------------------------------------------ACCTATACTAT---ATCCGTTGCGCTTCAATGATCCGCTTCCATGCCAGATTAGTATCGCGTTT-----------GGACTGTGAGTT-------GAA--AAATTATATTGTTGGCTAATA------------------------ATGG--TT-CGCATCGTTTGGCTGAACATGCCACAG-
droBip1 scf7180000396589:1047244-1047467 - CTGTGTTGGAGAAGGAGCTGATGCTCGAGACTCTGCAGCAGGTGGGCAAGGTAAGTTGA----ACCCATTA-AG--TTATATACATAC----AA------------------------------------------------------------------------------------------ATA----AA-----ACATATA--------------------------------------------GC----TATAATAT---AACCGTTGCGCTTCAATGATCCGCTTCCAAGCCAGATTAGTATCGCGTTC-----------GGACTCTGAGTT-------GAA--AAATTATATTGTTGGCTAATA------------------------ATGG--TT-CGCATCGTTTGGCTGAACATGCCACAG-
droKik1 scf7180000302266:229629-229852 - CGGTCCTAGAGAAGGAGCTGATGCTCGAAACTCTGCAGCAGGTGGGCAAGGTAAGTCGACAA----T---ATAT--ATATCTATATAC----CA------------------------------------------------------------------------------------------TAT----AA-----ACATACC--------------------------------------------CCAATCAGTACA-----ATCCGTTGGGCTTCAATGATCCGCAGCTATGGCAGATTAGTATCGTGTTC-----------GGACTCTGGGCC-------TTA--AAATTATATAGTTGGGTAATA------------------------ATGG--CT-CGCATCGTATGGCTGCACACGCCACAG-
droFic1 scf7180000454107:168811-169025 - CGGTGCTGGAAAAGGAGCTAATGCTCGAGACTCTGCAGCAGGTGGGCAAGGTAAGTCCA----A--T---A-----------------ACCCAAAAAAA----AAAA-CTATATA--------------------------------------------------------------------------------------------------------------------------------------CCAATCTGTACA-----ATCCGTCGTGCCTCAATGAGCCGCTGCTATGAGAGATTAGTATCGTGTTC-----------GGACTCTGGGCT-------TCA--AAATTACATAGTTGGGTAATA------------------------ATGG--CT-CGCATCGTTTGGCTGCACACGCCACAG-
droEle1 scf7180000491268:1045252-1045463 - CGGTGCTGGAAAAGGAGCTTATGCTCGAGACTCTGCAGCAGGTGGGCAAGGTGAGTCCA----A--T---ATAC----------------------ATTTA---CCTCTAATATA--------------------------------------------------------------------------------------------------------------------------------------CCAATCCGCACA-----ATCCGTCGTGCTTCAATGATCCGCTGCTATGGCAGATTTGTATCGTGTTC-----------GGACTCTGGCTT-------TTA--AAATTACATAGTTGGGTAATA------------------------ATGG--CT-CGCATCGTTTGGCTGCACACGCCACAG-
droRho1 scf7180000779528:172271-172482 - CGGTGCTGGAGAAGGAGCTAATGCTCGAGACTCTGCAGCAGGTGGGCAAGGTAAGTCCA----A--T---ATGC----------------------ATACA---CAACTTATATA--------------------------------------------------------------------------------------------------------------------------------------CCAATCTGTACA-----ATCCGTCGTGCTTCAATGATCCGTTGCCATGGCAGATTAGTATCGTGTTC-----------GGACTCTGGGTT-------TTA--AAATTACATAGTTGGGTAATA------------------------ATGG--CT-CGCATCGTTTGGCTGCACACGCCACTG-
droBia1 scf7180000302193:5765056-5765264 + CGGTGCTGGAGAAGGAGCTGATGCTCGAGACCCTGCAGCAGGTGGGCAAGGTAGGTTAC-------C---ATAC----------------------ACT--TGGAAACTGATATG--------------------------------------------------------------------------------------------------------------------------------------CCAATCTATACAATACGATCGGTTGCGCCTCAACGACCGCCTGCTATGGCAGTTTAGTATCGTGCCT-----------GGGCCCC-----------------AAATTATATAGTTGGGTAATA------------------------ATGG--CC-CGCATCGTTTGGCTGCACACGCCACTG-
droTak1 scf7180000415741:125468-125683 + CGGTGCTGGAAAAGGAGCTGATGCTCGAAACCCTGCAGCAGGTGGGCAAGGTGAGTCAA----A--T---A-----------------AAACGCATATT----GAAACCGATATA--------------------------------------------------------------------------------------------------------------------------------------CCAATCTGTACA-----ATCCGTTGTGCTTCAATGATCCGCTGCTATGGCAGATCGGTATCGTGTTC-----------GGGCTCTGGGCC-------TTA--AAATTATATAGTTGGGTAATA------------------------ATGG--TT-CGCATCGTTTGGCTGCACACGCCACGG-
droEug1 scf7180000409466:3331488-3331709 - CGGTGCTGGAAAAGGAGCTGATGCTCGAAACTCTGCAGCAGGTGGGCAAGGTAAGTCCAAAA----TATTATACATATA----------------TATA----TATACCGATATG--------------------------------------------------------------------------------------------------------------------------------------CCAATCTCAACG-----ATCCGTTGTGCTTCAATGATCCGCTGCTATGGCAGATTGGTATCGTGCTC-----------GGGCTCTGGGCT-------TCA--AAATTATATAGTTGGGTAATA------------------------ATGG--CC-CGCATCGTTTGGCTGCACACGCCACAG-
dm3 chr3L:5566561-5566781 - CGGTGCTGGAAAAGGAGCTAATGCTTGAGACTTTGCAGCAGGTGGGCAAGGTGAGTTCGCGAAA--T---ATGT----------------------ATT----CCAACCGATATG--------------------------------------------------------------------------------------------------------------------------------------CCAATCCGTACA-----ATCCGTTGTGCTTCAATGATCCGTTGCCATGGCAGATTAGTATCGTGCTC-------TATGGGGCACTGAATT-------TTAAAAAATTATAGAGTTGGCTAATA------------------------ATGG--CT-CGCATCGTTCGACTGCACACGCTACGG-
droSim2 3l:5479590-5479645 - CGGTGCTGGAGAAGGAGCTAATGCTCGAGACTCTGCAGCAGGTGGGCAAGGTGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_2:5503142-5503197 - CGGTGCTGGAGAAGGAGCTAATGCTCGAGACTCTGCAGCAGGTGGGCAAGGTGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3L:6130340-6130398 - CGGTGCTGGAAAAGGAGCTGATGCTCGAAACTCTGCAGCAGGTGGGCAAGGTAAGTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4784:8253063-8253293 - CTGTGCTGGAAAAGGAGCTAATGCTGGAAACTCTGCAGCAGGTGGGCAAGGTAAGTCGCAAG----T---ATAC--ATATG--------------TACT----CAACCTGATATGCCTGGA---------------------------------------------------------------------------------------------------------------------------------CAATCTGTACA-----ATCCGTTGCGCTTCAATGGTCCGTTGCTATGGCAGATTAGTATCGTGCTC-----------GGGCTCTGAATTTATGGAGTTC--AAATTATAGAGTTGGCTAATA------------------------ATGG--CT-CGCATCGTTCGACTGCACACGCCACGG-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CGGTGCTGGAAAAGGAGCTGATGCTGGAAACGCTGCAGCAGGTGAACAAGGTAAGTGGA----C-------------------------------------TCTTA-----AACGCCTGAATGCACAG---------------------AGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCGATACATAAAC--------------GTC---------------------------C-----ATTTCGTATCGGTCGGTGTC-----AGTATT--CGAG-------TCGTATATCGTGAAAAATTCATATGGT---------------------------------------------------TACCTAATCTTTATAATGT-TATATGGCTATTATTGCCTTT-TGCATCGTTC-GTTGCGCACGTCACGA-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................GCTGATGCTGGAAACGCT...............................................................................................................................................................................................................................................................................................................................................................................................................1816.006000000000500000000000000000000000100000000000000000000000000000
................GCTGATGCTGGAAACGCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................2014.004000000000100000000000000000002010000000000000000000000000000000
...............AGCTGATGCTGGAAACGCT...............................................................................................................................................................................................................................................................................................................................................................................................................1913.003000000010200000000000000000000000000000000000000000000000000000
...............AGCTGATGCTGGAAACGCTGCA............................................................................................................................................................................................................................................................................................................................................................................................................2212.002000002000000000000000000000000000000000000000000000000000000000
..................TGATGCTGGAAACGCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000100000000000000000000000100000000000000000000000000000
...............AGCTGATGCTGGAAACGCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................2112.002000100000100000000000000000000000000000000000000000000000000000
..............GAGCTGATGCTGGAAACGCT...............................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000100000000000000000001000000000000000000000000000000000
..................TGATGCTGGAAACGCTGCAGCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................2512.002000000000000001100000000000000000000000000000000000000000000000
...........................AAACGCTGCAGCAGGTGA....................................................................................................................................................................................................................................................................................................................................................................................................1812.002000002000000000000000000000000000000000000000000000000000000000
................GCTGATGCTGGAAACGCTGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................2212.002000000000000000000200000000000000000000000000000000000000000000
..................TGATGCTGGAAACGCTGCA............................................................................................................................................................................................................................................................................................................................................................................................................1912.002000001000000000000000000000001000000000000000000000000000000000
...........AAGGAGCTGATGCTGGAAACGCT...............................................................................................................................................................................................................................................................................................................................................................................................................2312.002000000010000000010000000000000000000000000000000000000000000000
.................CTGATGCTGGAAACGCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000100000000000000000000000100000000000000000000000000000
..............GAGCTGATGCTGGAAACGCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................ATCGGTCGGTGTC-----AGTATT--CGA............................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
....................ATGCTGGAAACGCTGCAGCAGGTGA....................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000001000000000000000000000000000000000
............................AACGCTGCAGCAGGTGAACAAGG..............................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
.......................CTGGAAACGCTGCAGCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001000000000000000000000000000000000000000000000000000000000
........................TGGAAACGCTGCAGCAGGTGAA...................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
.............GGAGCTGATGCTGGAAACGC................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001000000000000000000000000000000000000000000000000000000000
...............AGCTGATGCTGGAAACGCTGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
............AGGAGCTGATGCTGGAAACG.................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000010000000000000000000000000000000000000000000000000000000
......................GCTGGAAACGCTGCAGCAGGTGAA...................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001000000000000000000000000000000000000000000000000000000000
............AGGAGCTGATGCTGGAAACGC................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
.............GGAGCTGATGCTGGAAACGCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000010000000000000000000000000000000000000000000000000000
..............GAGCTGATGCTGGAAACGC................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000100000000000000000000000000000000000000000000000000000
.............GGAGCTGATGCTGGAAACGCTGCA............................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
............................AACGCTGCAGCAGGTGAACAAGGA.............................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000001000000000000000000000000000000000000000000000000
........GAAAAGGAGCTGATGCTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.............GGAGCTGATGCTGGAAACGCTGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001000000000000000000000000000000000000000000000000000000000
......................GCTGGAAACGCTGCAGCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
....................ATGCTGGAAACGCTGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
...........AAGGAGCTGATGCTGGAAACGCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000100000000000000000000000000000000000000000000000000000
..GTGCTGGAAAAGGAGCTGATGCC........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000000000000000000000000000000000000000000000000000000000000
................GCTGATGCTGGAAACGCTGCA............................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001000000000000000000000000000000000000000000000000000000000
.......................CTGGAAACGCTGCAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................1820.501000000000000000000000000000000000100000000000000000000000000000
............................................................................................................................................................GAGAGAGAGAGAGAGAGAGAGCGCG............................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
CGGTGCTGGAGAAGGAGCTAATGCTGGAAACGCTGCAGCAGGTGAGCAAGGTAAGTGAC------------------------------------------TGTTG-----AACGCCTCAATGCGCAGCT-AAACAAGATTT---GATGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGCAATAGA-------------------GAGAGAGAAG----CAGATTGGGGGAACAAC-----ATTTCGTATCAGTCGGTGTC-----AGCTTTTGCGCGTCGCTTATCG-CA---TATACATA---TATACGTACAT-----------ATG-------TC-------TAA--AATTTATATGATTACCTAATGTTCATAATATTTTTATGGCCGTTATTGCTTTT-TGCATCGTTC-GTTGCGCACGCCAAAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........GAAGGAGCTAATGCTGGAAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.........AGAAGGAGCTAATGCTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.......................CTGGAAACGCTGCAGCAGGTGAGCA.................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000
..............................................................................................................................................................................GGGAGCAATAGA-------------------GAGAGA..............................................................................................................................................................................................................................1820.501000100
droGri2
CGGTACTGGAGAAGGAGCTAATGCTAGAAACGCTGCAGCAGGTGAACAAGGTAAGTCTG----G--C---G-----------------A---------T--TGTTG-----CACGCCTCAATGCACACCTTAGATAAGAAATAGAGATAAGAGAGA---AGGGAAAGGGGGAAAGGGAGCTATAGA-------------------GTCAAAG--------------------------------------------------------------------------------------------------------------------------------------TAC--AACTTATAAAGTTAGGTAATGCCTACAATTT-GATATGGTCATTATTGCTTTT-TGCATCGTTC-GTTGCGCATGCCACA--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..GTACTGGAGAAGGAGCTAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................2112.00211
...........................AAACGCTGCAGCAGGTGAACA.................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
...............AGCTAATGCTAGAAACGCTGCA............................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
.GGTACTGGAGAAGGAGCTA.............................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
....ACTGGAGAAGGAGCTAATGC.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
....................ATGCTAGAAACGCTGCAGCAGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................2411.00110
..GTACTGGAGAAGGAGCTAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101
..GTACTGGAGAAGGAGCTAATGCT........................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101
....ACTGGAGAAGGAGCTAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101
.....CTGGAGAAGGAGCTAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
............................AACGCTGCAGCAGGTGAACAAGGA.............................................................................................................................................................................................................................................................................................................................................................................................2411.00101
..........................GAAACGCTGCAGCAGGTGAACA.................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
droWil2
CGGTGCTAGAGAAGGAGCTAATGCTGGAGACTCTGCAGCAGGTGAATAAGGTAAGTTCC----A--A---A-----------------G---------T--TCCAAATCGATAGGCCTCAATGATCATCATAATC----------------------------------------------------------------------ATCAGACAACGCCC----------------CATTAGGTTTCGTATCATTTGGTACC-----TGAAAC--------------CATATTTTGT------TTT-TTTCGT--TTATTTTTC----GTGT---------------------------TTTGTTAGGTAA--------------------------TTGCCTCTGCGTTTCATTC-GTTGCACACGCCAACA-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................AATGCTGGAGACTCTGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................2115.00550000
............AGGAGCTAATGCTGGAGACTCT...............................................................................................................................................................................................................................................................................................................................................................................................................2213.00330000
............AGGAGCTAATGCTGGAGACTCTGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................2711.00110000
........GAGAAGGAGCTAATGCTGGAGACT.................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
...............................................................................................................................................................................................................................................................................................................................TTTC----GTGT---------------------------TTTGTTAGGTAA--------------------------TTGC.................................2411.00100001
............AGGAGCTAATGCTGGAGACTCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
.GGTGCTAGAGAAGGAGCTAATGCT........................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100001
.....CTAGAGAAGGAGCTAATGCTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
...............AGCTAATGCTGGAGACTCTGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
...............................TCTGCAGCAGGTGAATAAGGA.............................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
..................TAATGCTGGAGACTCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
.GGTGCTAGAGAAGGAGCTAATGCTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
...................AATGCTGGAGACTCTGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
.....................TGCTGGAGACTCTGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
dp5
CGGTGCTGGAGAAGGAGCTGATGCTCGAGACCCTGCAACAGGTGGGAAAGGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................CGAGACCCTGCAACAGGTGGGA..................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000001
...........AAGGAGCTGATGCTCGAGAC..................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000000
droPer2
CGGTGCTGGAGAAGGAGCTGATGCTCGAGACCCTGCAACAGGTGGGAAAGGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................CGAGACCCTGCAACAGGTGGGAAAGGA.............................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
..GTGCTGGAGAAGGAGCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.GGTGCTGGAGAAGGAGCTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
droAna3
CTGTGTTGGAGAAGGAGCTGATGCTCGAGACTCTGCAGCAGGTGGGCAAGGTAAGTTGA----ACCCATTT-AG--TTATATACACAC----AA-------------------------------------------------------------------------------------------AT----ACATATATCCTAT------------------------------------------------ACCTATACTAT---ATCCGTTGCGCTTCAATGATCCGCTTCCATGCCAGATTAGTATCGCGTTT-----------GGACTGTGAGTT-------GAA--AAATTATATTGTTGGCTAATA------------------------ATGG--TT-CGCATCGTTTGGCTGAACATGCCACAG-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..GTGTTGGAGAAGGAGCTGATGCT........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.............................ACTCTGCAGCAGGTGGGCA.................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.........................CGAGACTCTGCAGCAGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.................CTGATGCTCGAGACTCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
...TGTTGGAGAAGGAGCTGATGCT........................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.TGTGTTGGAGAAGGAGCTGATGCTCGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................2911.001010000
............AGGAGCTGATGCTCGAGACTCTGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
.......................CTCGAGACTCTGCAGCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.......GGAGAAGGAGCTGATGCT........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100
.........................CGAGACTCTGCAGCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
...............AGCTGATGCTCGAGACTCT...............................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
........................TCGAGACTCTGCAGCAGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
................GCTGATGCTCGAGACTCTGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.........................CGAGACTCTGCAGCAGGTGGGC..................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
droBip1
CTGTGTTGGAGAAGGAGCTGATGCTCGAGACTCTGCAGCAGGTGGGCAAGGTAAGTTGA----ACCCATTA-AG--TTATATACATAC----AA------------------------------------------------------------------------------------------ATA----AA-----ACATATA--------------------------------------------GC----TATAATAT---AACCGTTGCGCTTCAATGATCCGCTTCCAAGCCAGATTAGTATCGCGTTC-----------GGACTCTGAGTT-------GAA--AAATTATATTGTTGGCTAATA------------------------ATGG--TT-CGCATCGTTTGGCTGAACATGCCACAG-SizeHit CountTotal NormTotal
No Reads
droKik1
CGGTCCTAGAGAAGGAGCTGATGCTCGAAACTCTGCAGCAGGTGGGCAAGGTAAGTCGACAA----T---ATAT--ATATCTATATAC----CA------------------------------------------------------------------------------------------TAT----AA-----ACATACC--------------------------------------------CCAATCAGTACA-----ATCCGTTGGGCTTCAATGATCCGCAGCTATGGCAGATTAGTATCGTGTTC-----------GGACTCTGGGCC-------TTA--AAATTATATAGTTGGGTAATA------------------------ATGG--CT-CGCATCGTATGGCTGCACACGCCACAG-SizeHit CountTotal NormTotal
No Reads
droFic1
CGGTGCTGGAAAAGGAGCTAATGCTCGAGACTCTGCAGCAGGTGGGCAAGGTAAGTCCA----A--T---A-----------------ACCCAAAAAAA----AAAA-CTATATA--------------------------------------------------------------------------------------------------------------------------------------CCAATCTGTACA-----ATCCGTCGTGCCTCAATGAGCCGCTGCTATGAGAGATTAGTATCGTGTTC-----------GGACTCTGGGCT-------TCA--AAATTACATAGTTGGGTAATA------------------------ATGG--CT-CGCATCGTTTGGCTGCACACGCCACAG-SizeHit CountTotal NormTotal
No Reads
droEle1
CGGTGCTGGAAAAGGAGCTTATGCTCGAGACTCTGCAGCAGGTGGGCAAGGTGAGTCCA----A--T---ATAC----------------------ATTTA---CCTCTAATATA--------------------------------------------------------------------------------------------------------------------------------------CCAATCCGCACA-----ATCCGTCGTGCTTCAATGATCCGCTGCTATGGCAGATTTGTATCGTGTTC-----------GGACTCTGGCTT-------TTA--AAATTACATAGTTGGGTAATA------------------------ATGG--CT-CGCATCGTTTGGCTGCACACGCCACAG-SizeHit CountTotal NormTotal
No Reads
droRho1
CGGTGCTGGAGAAGGAGCTAATGCTCGAGACTCTGCAGCAGGTGGGCAAGGTAAGTCCA----A--T---ATGC----------------------ATACA---CAACTTATATA--------------------------------------------------------------------------------------------------------------------------------------CCAATCTGTACA-----ATCCGTCGTGCTTCAATGATCCGTTGCCATGGCAGATTAGTATCGTGTTC-----------GGACTCTGGGTT-------TTA--AAATTACATAGTTGGGTAATA------------------------ATGG--CT-CGCATCGTTTGGCTGCACACGCCACTG-SizeHit CountTotal NormTotal
No Reads
droBia1
CGGTGCTGGAGAAGGAGCTGATGCTCGAGACCCTGCAGCAGGTGGGCAAGGTAGGTTAC-------C---ATAC----------------------ACT--TGGAAACTGATATG--------------------------------------------------------------------------------------------------------------------------------------CCAATCTATACAATACGATCGGTTGCGCCTCAACGACCGCCTGCTATGGCAGTTTAGTATCGTGCCT-----------GGGCCCC-----------------AAATTATATAGTTGGGTAATA------------------------ATGG--CC-CGCATCGTTTGGCTGCACACGCCACTG-SizeHit CountTotal NormTotal
No Reads
droTak1
CGGTGCTGGAAAAGGAGCTGATGCTCGAAACCCTGCAGCAGGTGGGCAAGGTGAGTCAA----A--T---A-----------------AAACGCATATT----GAAACCGATATA--------------------------------------------------------------------------------------------------------------------------------------CCAATCTGTACA-----ATCCGTTGTGCTTCAATGATCCGCTGCTATGGCAGATCGGTATCGTGTTC-----------GGGCTCTGGGCC-------TTA--AAATTATATAGTTGGGTAATA------------------------ATGG--TT-CGCATCGTTTGGCTGCACACGCCACGG-SizeHit CountTotal NormTotal
No Reads
droEug1
CGGTGCTGGAAAAGGAGCTGATGCTCGAAACTCTGCAGCAGGTGGGCAAGGTAAGTCCAAAA----TATTATACATATA----------------TATA----TATACCGATATG--------------------------------------------------------------------------------------------------------------------------------------CCAATCTCAACG-----ATCCGTTGTGCTTCAATGATCCGCTGCTATGGCAGATTGGTATCGTGCTC-----------GGGCTCTGGGCT-------TCA--AAATTATATAGTTGGGTAATA------------------------ATGG--CC-CGCATCGTTTGGCTGCACACGCCACAG-SizeHit CountTotal NormTotal
No Reads
dm3
CGGTGCTGGAAAAGGAGCTAATGCTTGAGACTTTGCAGCAGGTGGGCAAGGTGAGTTCGCGAAA--T---ATGT----------------------ATT----CCAACCGATATG--------------------------------------------------------------------------------------------------------------------------------------CCAATCCGTACA-----ATCCGTTGTGCTTCAATGATCCGTTGCCATGGCAGATTAGTATCGTGCTC-------TATGGGGCACTGAATT-------TTAAAAAATTATAGAGTTGGCTAATA------------------------ATGG--CT-CGCATCGTTCGACTGCACACGCTACGG-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................TGAGACTTTGCAGCAGGTGGG...................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................TTGAGACTTTGCAGCAGGTGGG...................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000
.......................CTTGAGACTTTGCAGCAGGTGGG...................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000
...............................TTTGCAGCAGGTGGGCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010000000000
CGGTGCTGGAAAAGGAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
.........................TGAGACTTTGCAGCAGGTGGGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
............AGGAGCTAATGCTTGAGACTTTGC.............................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AAGGAGCTAATGCTTGAGAC..................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CTGGAAAAGGAGCTAATGCTTGAGAC..................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................AGACTTTGCAGCAGGTGGGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000
.................................TGCAGCAGGTGGGCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
......................GCTTGAGACTTTGCAGCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GGTGCTGGAAAAGGAGCTAA............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................GCTTGAGACTTTGCAGCAGGTGGGC..................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CTTTGCAGCAGGTGGGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..GTGCTGGAAAAGGAGCTAATGCTTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAGACTTTGCAGCAGGTGGGCAG................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......TGGAAAAGGAGCTAATGCTTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TGAGACTTTGCAGCAGGTGG....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CTTTGCAGCAGGTGGGCAAGGA.............................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GGAAAAGGAGCTAATGCTTGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TTTGCAGCAGGTGGGCAAGGAAC...........................................................................................................................................................................................................................................................................................................................................................................................2321.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGGAGCTAATGCTTGAGACTTTGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TAATGCTTGAGACTTTGCAGCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CTTGAGACTTTGCAGCAGGTGG....................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAGACTTTGCAGCAGGTGGGG..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GGTGCTGGAAAAGGAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CGGTGCTGGAAAAGGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...TGCTGGAAAAGGAGCTAATGCT........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...TGCTGGAAAAGGAGCTAATGCTTGAGAC..................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAGACTTTGCAGCAGGTGGGC..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CTTGAGACTTTGCAGCAGGTGGGC..................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TTGAGACTTTGCAGCAGGTGG....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CTTTGCAGCAGGTGGGCAA................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
...................AATGCTTGAGACTTTGCAGCAGGTGGG...................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GAAAAGGAGCTAATGCTTG......................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................TGCTTGAGACTTTGCAGCAGGTGG....................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................ATGCTTGAGACTTTGCAGCAGGTGGG...................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TTGAGACTTTGCAGCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTCGACTGCACAC........1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TGCTTGAGACTTTGCAGCAGGTGGG...................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TGAGACTTTGCAGCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
............................GACTTTGCAGCAGGTGGGC..................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................CCGTTGCCATGGCAGATTAGTA.............................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGACTGCACACGCTACGG-2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GCTTGAGACTTTGCAGCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TGCTTGAGACTTTGCAGCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TGAGACTTTGCAGCAGGTGGGCA.................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................AGAGTTGGCTAATA------------------------ATGG--...............................1820.5010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CGGTGCTGGAGAAGGAGCTAATGCTCGAGACTCTGCAGCAGGTGGGCAAGGTGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................TCGAGACTCTGCAGCAGGTGGGC..................................................................................................................................................................................................................................................................................................................................................................................................2313.00330000000000000000
..................TAATGCTCGAGACTCTGCAGCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................2412.00220000000000000000
.........................CGAGACTCTGCAGCAGGTGG....................................................................................................................................................................................................................................................................................................................................................................................................2012.00201100000000000000
.........................CGAGACTCTGCAGCAGGTGGG...................................................................................................................................................................................................................................................................................................................................................................................................2112.00211000000000000000
.........................CGAGACTCTGCAGCAGGTGGGCA.................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
................GCTAATGCTCGAGACTCTGCA............................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.................CTAATGCTCGAGACTCTGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
......................GCTCGAGACTCTGCAGCAGGTGGG...................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000001000
...................AATGCTCGAGACTCTGCAGCAGGTGGG...................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
........................TCGAGACTCTGCAGCAGGTGGG...................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.........................CGAGACTCTGCAGCAGGTGGGCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
........................TCGAGACTCTGCAGCAGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
...............AGCTAATGCTCGAGACTCTGCAGCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
................GCTAATGCTCGAGACTCTGCG............................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
............AGGAGCTAATGCTCGAGACTCTGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
.........................CGAGACTCTGCAGCAGGTGGGC..................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.......................CTCGAGACTCTGCAGCAGGTGGG...................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
.........................CGAGACTCTGCAGCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
..................TAATGCTCGAGACTCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.............................ACTCTGCAGCAGGTGGGCA.................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
.........................CGAGACTCTGCAGCAGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
...............AGCTAATGCTCGAGACTC................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
...................AATGCTCGAGACTCTGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
...............AGCTAATGCTCGAGACTCT...............................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
.....................TGCTCGAGACTCTGCAGCAGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000001000
..........GAAGGAGCTAATGCTCGAGACTCTGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100000000000000
......................GCTCGAGACTCTGCAGCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
CGGTGCTGGAGAAGGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
...........................AGACTCTGCAGCAGGTGGGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
........................TCGAGACTCTGCAGCAGGC......................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
droSec2
CGGTGCTGGAGAAGGAGCTAATGCTCGAGACTCTGCAGCAGGTGGGCAAGGTGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....GCTGGAGAAGGAGCTAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
..........................GAGACTCTGCAGCAGGTGGGC..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
CGGTGCTGGAGAAGGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
CGGTGCTGGAGAAGGAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
...........................AGACTCTGCAGCAGGTGGGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
................GCTAATGCTCGAGACTCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
droYak3
CGGTGCTGGAAAAGGAGCTGATGCTCGAAACTCTGCAGCAGGTGGGCAAGGTAAGTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................CGAAACTCTGCAGCAGGTGGGC..................................................................................................................................................................................................................................................................................................................................................................................................2212.00220000000000
.........................CGAAACTCTGCAGCAGGTGGGCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................2612.00210000010000
............AGGAGCTGATGCTCGAAACTCTGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.........................CGAAACTCTGCAGCAGGTGGGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................2511.00100000100000
.....................TGCTCGAAACTCTGCAGCAGGTGGG...................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000
...TGCTGGAAAAGGAGCTGATGCT........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000
................................CTGCAGCAGGTGGGCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
CGGTGCTGGAAAAGGAGCTGATGCTC.......................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
................GCTGATGCTCGAAACTCTGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
............................AACTCTGCAGCAGGTGGGC..................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000
.........................CGAAACTCTGCAGCAGGTGGGCAAGGA.............................................................................................................................................................................................................................................................................................................................................................................................2711.00100000100000
...TGCTGGAAAAGGAGCTGATGCTCGAAACT.................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
droEre2
CTGTGCTGGAAAAGGAGCTAATGCTGGAAACTCTGCAGCAGGTGGGCAAGGTAAGTCGCAAG----T---ATAC--ATATG--------------TACT----CAACCTGATATGCCTGGA---------------------------------------------------------------------------------------------------------------------------------CAATCTGTACA-----ATCCGTTGCGCTTCAATGGTCCGTTGCTATGGCAGATTAGTATCGTGCTC-----------GGGCTCTGAATTTATGGAGTTC--AAATTATAGAGTTGGCTAATA------------------------ATGG--CT-CGCATCGTTCGACTGCACACGCCACGG-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................TGCTGGAAACTCTGCAGCAGGTGGGC..................................................................................................................................................................................................................................................................................................................................................................................................26140.004000000040
.........................GGAAACTCTGCAGCAGGTGGGC..................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.........AAAAGGAGCTAATGCTGGAAACT.................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000
.....................TGCTGGAAACTCTGCAGCAGGTGGG...................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
................GCTAATGCTGGAAACTCTGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
......................GCTGGAAACTCTGCAGCAGGTGGGCA.................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
...............AGCTAATGCTGGAAACTCTGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
................GCTAATGCTGGAAACTCTGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000
................................CTGCAGCAGGTGGGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.............................ACTCTGCAGCAGGTGGGC..................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.............GGAGCTAATGCTGGAAACTCT...............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
................GCTAATGCTGGAAACTCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
........................TGGAAACTCTGCAGCAGGTGGGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
..GTGCTGGAAAAGGAGCTAATGCTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
....GCTGGAAAAGGAGCTAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
..........................GAAACTCTGCAGCAGGTGGGC..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
...............AGCTAATGCTGGAAACTCTGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
..GTGCTGGAAAAGGAGCTAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000

Generated: 05/19/2015 at 09:44 PM