ID:

dvi_19517

 Coordinate:

scaffold_13049:11467241-11467534 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-81.7 -81.5 -81.3

Flybase annnotation

intron [Dvir\GJ11959-in]; exon [dvir_GLEANR_11964:7]; CDS [Dvir\GJ11959-cds]; exon [dvir_GLEANR_11964:6]; CDS [Dvir\GJ11959-cds]; intron [Dvir\GJ11959-in]

No Repeatable elements found

mature
star
  1. dvi_19517  scaffold_13049:11467382-11467400 -
  2. dvi_19517  scaffold_13049:11467424-11467442 -
  3. dvi_19517  scaffold_13049:11467508-11467526 -

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##########################################--------
TCGCCCTGGCAATGGTGGCAACATCGATGACGGTGATGCCAACCATCCAGGTGCCGGTGATGGCAACCGTCCAGGCACCGGTTACAATACAGGTGCCGGTGATGGCAACCGTCCAGGCGCCGGTTACAATACAGGTGCCGGTGATGGCAACCGTCCAGGCACCGGTTACAATACAGGTGCCGGTGATGGCAACCGTCCAGGCACCGGTTACAATACAGGTGCCGGTGATGGTAACCGTCCAGGCGCCAGTTACAATACTGGCAGCGGCGTCGGTGGCCGCCCGGGCAGCGGTAATGGCGGCTATAACGGCAACCAGAACGGCAATAATGGTGCCTACACTCCAGACACAAATACCGGTTTTCCTGGGGCCATCAAATACACTTCAGGTTAGATC
**********************************************************************************************************************************************........((((((.((((((.((......)).)))))))).(((((..((((((..((((((.((......)).))))))...))))))..)))))...((((((((......)))))).))((.(((((((((((((...((....))...)))))))))..))))..))...))))..........*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 V053
head
 M047
female body
 M027
male body		 GSM1528803
follicle cells		 SRR060684
140x9_0-2h_embryos_total
 V116
male body		 M028
head
 V047
embryo
 SRR060662
9x160_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR1106729
mixed whole adult body
.........................................................................................................................................................................................................................................................................................................................CGGAACGTCAATAATGATGCCT........................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................AACCAGAACGGCAATAATGGT............................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CAGGTCCCGGTGATGGTACC............................................................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................GCAATAATGGTGCCTACACTCCAGACAC.............................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................AATAATGGTGCCGACACTC..................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................GTCGGTCGCCGCCAGGTC............................................................................................................ 18 3 20 0.75 15 2 0 3 10 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................GCGGTAATGGGAGCTGTAACG...................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................GATGGCAACCGTCCAGGCA......................................................................................................................................................................................................................................... 19 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GATGGCAACCGTCCAGGCA............................................................................................................................................................................................... 19 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........GCCATGGTGGCAACTTCGA............................................................................................................................................................................................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................GATGGCAACCGTCCAGGCA............................................................................................................................................................................................................................................................................................................................. 19 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................TGGCTGCGGCGTCGGTGGCT.................................................................................................................... 20 2 10 0.30 3 0 0 0 0 3 0 0 0 0 0 0 0 0
........................................................................................................................................GCCGGTGATGGCAACCGTCCAGGC.......................................................................................................................................................................................................................................... 24 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................CCGGGCACCGCTAATGGCGCC............................................................................................. 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................CTGTGATGGCAACCGTCCAGGC.............................................................................................................................................................................................................................................................................................................................. 22 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GCCGGTGATGGCAACCGTCCAGGC.................................................................................................................................................................................................................................................................................... 24 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................CTGTGATGGCAACCGTCCAGGC.................................................................................................................................................................................................................................................................................... 22 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CTGTGATGGCAACCGTCCAGGC.......................................................................................................................................................................................................................................... 22 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GCCGGTGATGGCAACCGTCCAGGC.............................................................................................................................................................................................................................................................................................................................. 24 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................GCCGGTGATGGCAACCGTCCAGGC................................................................................................................................................................................................ 24 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................CTGTGATGGCAACCGTCCAGGC................................................................................................................................................................................................ 22 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................CAGCACAGCCATAATGGTGC............................................................. 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................ATTGGGGCTATAACGGCACC................................................................................. 20 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................GTCGGTCGCCGCCAGGGCT........................................................................................................... 19 3 16 0.19 3 0 0 0 0 0 0 0 2 1 0 0 0 0
........................................................................................................................................................................................................................................................................................CGGGGCAGCGGTAATGGTGCC............................................................................................. 21 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................CGGGCATCGGTAATGGTGCC............................................................................................. 20 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................GTCGGTCGCCGCCCGGTCT........................................................................................................... 19 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................CGGGGCATCGGTAATGGCGC.............................................................................................. 20 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TAACCGACCCGGCACCGGTT......................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................TAACCGACCCGGCACCGGTT................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................CGGGTATCGGTAATGGTGG.............................................................................................. 19 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................TAACCGACCCGGCACCGGTT....................................................................................................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................GGTATTCCAGGGGCCAT...................... 17 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................CCGGGCATCGTTAATGGTG............................................................................................... 19 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................GTAAGGACGGCTAGAACG...................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.TGCCCAGGCAATGGTGGCA...................................................................................................................................................................................................................................................................................................................................................................................... 19 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................GGCAGCAGTAATGGC................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................................................................................................................CGCCCCCCGGGCCGCGGT...................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................................................................................TACACTCCAGACAAGAAGA......................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

AGCGGGACCGTTACCACCGTTGTAGCTACTGCCACTACGGTTGGTAGGTCCACGGCCACTACCGTTGGCAGGTCCGTGGCCAATGTTATGTCCACGGCCACTACCGTTGGCAGGTCCGCGGCCAATGTTATGTCCACGGCCACTACCGTTGGCAGGTCCGTGGCCAATGTTATGTCCACGGCCACTACCGTTGGCAGGTCCGTGGCCAATGTTATGTCCACGGCCACTACCATTGGCAGGTCCGCGGTCAATGTTATGACCGTCGCCGCAGCCACCGGCGGGCCCGTCGCCATTACCGCCGATATTGCCGTTGGTCTTGCCGTTATTACCACGGATGTGAGGTCTGTGTTTATGGCCAAAAGGACCCCGGTAGTTTATGTGAAGTCCAATCTAG
***************************************************************........((((((.((((((.((......)).)))))))).(((((..((((((..((((((.((......)).))))))...))))))..)))))...((((((((......)))))).))((.(((((((((((((...((....))...)))))))))..))))..))...))))..........********************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V047
embryo
 SRR060689
160x9_testes_total
 V116
male body		 V053
head
 M028
head
 SRR060679
140x9_testes_total
 SRR060672
9x160_females_carcasses_total
 M061
embryo
..................................................................................................................................................................................................................................................................................................................................TTATTACCACGGCTGTGAG..................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................ATTATTACCACGGCTGTGAG..................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0
................ACGTTGTAGCCACTGGCACTAC.................................................................................................................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0
.................CGTTCTAGATTCTGCCACTAC.................................................................................................................................................................................................................................................................................................................................................................... 21 3 3 0.67 2 0 1 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................CGGTCAACGTTATTACCATCGC................................................................................................................................ 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................TATTATTACCACGGCTGTGAG..................................................... 21 3 3 0.33 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................CAATATTATGTCCACGACCA.................................................................................................................................................................................................................. 20 2 4 0.25 1 0 0 0 1 0 0 0 0 0
................................................................................CAATATTATGTCCACGACCA...................................................................................................................................................................................................................................................................................................... 20 2 4 0.25 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................CAATATTATGTCCACGACCA........................................................................................................................................................................ 20 2 4 0.25 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................CAATATTATGTCCACGACCA............................................................................................................................................................................................................................................................ 20 2 4 0.25 1 0 0 0 1 0 0 0 0 0
............ACCACGGTTGTAGCTCCAGC.......................................................................................................................................................................................................................................................................................................................................................................... 20 3 11 0.18 2 0 0 0 0 0 0 2 0 0
.................CGTTGTTGCGACTGACACTAC.................................................................................................................................................................................................................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 1 0
.................CGTTCTTGCTTCTGCCACTAC.................................................................................................................................................................................................................................................................................................................................................................... 21 3 8 0.13 1 0 0 0 0 1 0 0 0 0
................CCGTTGTAGCTGCTGCCAGG...................................................................................................................................................................................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................CCACTACCAAGGGCAGTTC........................................................................................................................................................ 19 3 12 0.08 1 0 0 0 0 0 0 0 0 1
..................GTTCTAGCTTTTGCCACTAC.................................................................................................................................................................................................................................................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................CTATTACCTCCCATATTGC...................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:11467191-11467584 - dvi_19517 TCGCCCTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATGGTGGCAACATC---GATGA------------------------------CGGTGATGCCAACCATCCAGGTGCCGGTGATGGCAACCGTCCAGGCACCGGTTACAATACAGGTGCCGGTGATGGCAACCGTCCAGGCGCCGGTTACAATACAGGT------------------------------------------GCCGGTGATGGCAACCGTCCAGGCACCGGTTACAATACAGGTGCCGGTG------------------------------------ATGGCAACCGTCCAGGCACCGGTTACAATACAGGTGC-------------------------------CGGTGATGGTAACCGTCCAGGCGCCA---------------GTTACAATACTGGCAGCGGCGTCGGTGGCCGCCCGGGCAGCGGTAATGGCGGCTATAACGGCAACCAGAA------CGGCAATAATGGTGCCTACAC---------TCCAGACACAAATACCGGTTTTCCTGGGGCCATCAAATACACTTCAGGTTAGATC
droMoj3 scaffold_6680:9362505-9362796 + CCGTCCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAAGGTTCCGGTGTT---GGTGA------------------------------CGGTGATACTACCGGACCCGGACCT---------------------------------------------------------------CTGGGCGGAGGCGATAGAATCCGTCCTGGTGG------------------TGGTGGCAATATCATTGATGGTAATGTCTATCGACCAGGTGACGGTGGTGCCTATCGCC------------------------------------CAGGTGGTGACCTGAATATCGGGGC-------------------------------------------CGGCTCTGGCGGCCGTCCGGGCGGGG---------------------------------------------------------------------GTAC---TGGTGGCTACCAACCCGACAACAGTGGCGCCTATACTGGAG---------ACACCAATACCGGTTTTCCTGGGGCAATCAAATACACATCAGGTTAGATC
droGri2 scaffold_14624:2767066-2767384 + CGGCGGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTACGGCGGCGGCGGCTATGGCGGTGGCGGCTACTCTGGTGGTGGCTACTCCGGCGGTGGTTACTCCGGTGGTGGC------------------------------------------------------------------------TACTCCGGC------GGCGGTGGCTATGGCGGCGGCGGCGGTTATGGCGGCGGCGGCGGTTATGGCGGCGGCCATGGCGGTCATGTCCAGGT---------------------CTACAAGGTCTACACAACCACTGTCCACACTGGCGGCGGCGGCGGTGGATACGGCGGCGGTGGCTACGGC-------------------------------------------------------------------------------------------------------------------------GGCGGTGGCTACGGCGGCGGTGGCTATGGTGGCGGCGGTCACGGTGGCTACAGCGGCGGTTACAGCAGCG---GCAGCAG------------------------------------T
droWil2 scf2_1100000004511:4061814-4062237 + CCATCCGGATAATAATCCGTATAAACATGTTGTCGGCCCCAATGGCGGCAATGGAGGAAATGGCGATGGCGGCGGTAAAGGCGGCAATGGAGGCAATGGCGGTTTCGGTCCAAATGGCGGACCCGGCGGATTTGGCCCTAATGGACCACCTGGACCGCCCGGACCACCAGGACCATTAGGACCAAACGGCGCGGGAGGAGGAGGCCCAGGAAAACCGGTATATAGGGATG------------------------------------------GCGATCGCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTAGTGGGGCGGGTC------------------------------------------------------ATTACCATGGC------------------CT-------------------------------GGGTGATGCCAATGGCAAGGGTCAGGGTAATG---------CC------------------------------------AATGGCAATGGTAATGG---CGCCGGACCCTATCGTCCTGGCAATGAGGGAACCTACACAGAGACCTACACACAGACAGATACCGGTTTTCCTGGGGCCATTGTCTACGTACCAGGTTAGACC
dp5 XR_group6:8110546-8110872 + GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAGATCGCACAGGCCTGGGATCGGGTCAATATAATGCCAATGGCGATGCTACTGGTCCCGGCAGCGGCTCCGGTTTC---GGCTC------------------------------TGGCGATCGCTATAGCACTGGCAATGGC------------------------------------------------------------------------------------------------------------------AACGGCGTCGGTGCTGGCGATCGCTATAGCACTGGCAACGGCAACGGCGTCGGTG------------------------------------CTGGCGATCGCTATAGCACGGGAAGTGGTGCTGGAGT-------------------------------CGGTG---------------------------------------------------------------------------------CTGGAGTCGGTGCTGGCAGTGGCTATCGTCCTGGCGATGAGGGTACCTACACGAGCACCTACACGCACACCGATACCGGTTTTCCTGGGGCCATTGGATACGTATCAGGTTAGCCC
droPer2 scaffold_9612:607-953 - TCCCCCTG---------------------------------------------------------------------------------------------------------------------------------------------------------GACCCCCAGGACCCTTGGGCCCTGTCGGCGCGGGAGGCGGAGCCTCAGGAAAACCGGTATACAAGGATGGAGATCGCACAGGCCTGGGATCGGGTCAATATAATGCTAATGGCGACGCTACTGGTCCCGGCAGCGGCTCCGGTTTC---GGCTC------------------------------TGGCGATCGCTATAGCCCTGGCAATGGCAACGGC------------------------------------------------------------------------------------------------------------------GT-----------------------------------------TCGGTG------------------------------------CTGGCGATCGCTATAGCACGGGCAGTGGTGCT----------------------------------------------------------------------------------------------------------------------------GGAGTCGGTGCTGGCAGTGGCTATCGTCCTGGCGATGAGGGTACCTACACGAGCACCTACACGCACACCGATACCGGTTTTCCTGGGGCCATTGGATACGTATCAGGTTAGCCC
droAna3 scaffold_13337:13016950-13017351 + G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCGGTTCCGGAATC---GGCGG------------------------------CGGTGATCGTTATACCACCGGAAACGGTGGCGGAGCTGGTTC------------------------------CGGCGATCGTTATTCCACCGGAAACGGTGGCGGACCTGGTTCCGGCGGTCGTTATACCACCGGAAACGGTGGCGGACCTGGTTCCGGCGGTCGTTATACCACCGGAAACGGTGGCGGAGTTGGCT------------------------------------CCGGCGATCGTTATACCACCGGAAACGGTGGCGGAGT-------------------------------CGGTACCGGCGATCGTATTTCCGTCGG---------------------------CTCCGGCGATCGTGTTTCAGTCGGCAGCGGTTCCGCAATCGCAGCCGGCGGTCAATACCGCCCCGGCAATGAGGGAACCTACACGAGCACCTACACGTACACCGAGACCGGTTTTCCTGGGGCCATCGCCTATCAAGCAGGTTAGCCC
droBip1 scf7180000396589:1015589-1015943 - CG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGATCGTATTTCCGTCGGCAGCGGTTCCGGAATC---GGTGG------------------------------CGGTGATCGTTATAGCACCGGAAACGGTGGCGGAAATGGCTC------------------------------CGGCGGTCGTTATACCACC------------------------------------------GGAAACGGTGGCGGAGTTGGTTCCGGCGACCGTTATACCACCGGAAACGGTGGTGGAATCGGCT------------------------------------CCGGCGATCGTTATACCACCGGAAATGGTGGCGGAGT-------------------------------CGGCTCCGGCGATCGGGTTTCCGTCG---------------GA------------------------------------AGCGGTTCCGCAATCGCCGCCGGCGGTCAGTACCGCCCCGGCAATGAGGGAACCTACACGAGCACCTACACGTACACCGAGACCGGTTTTCCTGGGGCCATCGCCTATCAAGCAGGTTAGCCC
droKik1 scf7180000302266:194847-195123 - CAGGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG------------------------------------------GCGATCGTACAGGCACCGGCAGCGGTTCCGGAATC---GGTTC------------------------------CGGCGATCGC------------------------------------------------------------------------------------------------------------------------------------------------------------TACACCACCGGAAAAGGCGGTGCAGCCGGCT------------------------------------CCGGTGATCGCTATACCACCGGAAACGGTGGCGGCAT-------------------------------TGGCGGTGGCGATCGCACGGGAACGG---------------GT------------------------------------AGCGGTTCCGGAATCGGCGCCGGCGGCCAGTATCGGCCGGGCAATGAGGGAACCTACACGAGCACCTACACGCACACAGAGACCGGTTTTCCTGGGGCCATCGCATATCAAGCAGGTTAGCCC
droFic1 scf7180000454107:136429-136807 - CGGTTCCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGATCGCATCACCACCGGAAATGGTGGTGCTTACGGATC------------------------------CGGTGATCGCATTTCCACCGGAAACGGTGGCGGAGTCGGTTCCGGCGATCGCATTGGCACCGGAAACGGCGGTGCCTACGGTTCCGGCGATCGCATCTCCACCGGAAACGGTGGTGCGTACGGCT------------------------------------CCGGCGATCGCATTACCACCGGAAACGGTGGT-----CGCTACAAGCCCGGAAA--------------CGGTGGTGCCGATGGCACCGGAACCGGAATCG---------GA------------------------------------AGCGGTTACGGAATCGATGCCAGTGGCCAGTTCCGCCCGGACAACACGGGAACCTACACGAGCACCTACACGCACACAGAGACCGGTTTTCCTGGGGCCATTCAGTATCATCCAGGTTAGCCC
droEle1 scf7180000491268:1011892-1012300 - TGGACC------------------------------------------------------------------------------------------------------------------------------------AAATGGACCAAACGGACCACCGGGACCACCTGGCGGCTTGGGTCCGGTCGGCGCGGGAGGAGGAGCCTCAGGAAAACCGGTCTACAAGGATG------------------------------------------GCGATCGCACTGGCCTGGGCAGCGGTTCCGGAATC---GGTTC------------------------------CGGTGATCGCATTAGCACCGGAAACGGTGGCGCT------------------------------------------------------------------------------------------------------------------GTCGGTTCCGGCGATCGTTACACCACCGGCAACGGTGGTGGCAGTGGCG------------------------------------CCGGCGGTCGCTATACCACCGGAAACGGTGGCGGCGT-------------------------------CGGCGGTGGCGATCGCACGGGAACGG---------------GC------------------------------------AGTGGCTTCGGAATCGCTTCCGGCGGCCAGTACCGCCCGGAGAATGAGGGAACCTACACCAGCACCTACACGCACACCGAGACCGGTTTTCCTGGGGCCATTCCATACACTCCAGGTTAGCCC
droRho1 scf7180000779528:137326-137637 - G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGATCGCACTGGCCTCGGCAGCGGTTCCGGAATC---GGGTC------------------------------CGGTGATCGCATTTCCACCGGAAACGGTGGCGCT------------------------------------------------------------------------------------------------------------------GTCGGTTCCGGCGATCGTTACATCACCGGAAACGGTGGTGGAAGTGGCG------------------------------------CCGGCGGTCGCTATACCACCGGAAACGGTGGCGGCGT-------------------------------CGGCGGTGGCGATCGCACGGGAACTG---------------GC------------------------------------AGCGGTTTCGGAATCGCGGCCGGTGGTCAGTACCGCCCGGGAAATGAGGGAACCTACACCAGCACCTACACGCACACAGAGACCGGTTTTCCTGGGGCCATTGCATATCATCCAGGTTAGCCC
droBia1 scf7180000302428:1427310-1427586 + CTCCACCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAACGGTGGCGGCGTC---GGTGC------------------------------AGGCGACCGTTACT------------------------------------------------------------------------CCACC------------------------------------------GGAAACGGTGGCGGCGTCGGTGCCGGCGATCGTATCACCACCGGAAACGGTG------------------------------------------------------GTCGCTATACCACAGGAAACGGTGGCGGCGT-------------------------------CGGTGGTGGCGATCGCACCG---------------------GA------------------------------------AGCGGTTTCGGAATCAATGCCGGTGCCCAGTATCGCCCGGACAATGAGGGAACCTACACGAGCACCTACACGCAGACCCAGACCGGTTTTCCTGGGGCCGTTCCATATCATCCAGGTTAGCCC
droTak1 scf7180000415839:3965-4039 - GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG---------------------------GTGTT---GGCGG------------------------------TGGTGTTGGCGGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCCGGTG------------------------------------GTGGT---------------------GGTGGCGGGGT-------------------------------T---------------------------ACTGCCGGTGGTGGC------------------------------------GGCGGT---------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409466:3299404-3299761 - CGGTTCTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGATCGCATTAGCACCGGTAACGGTGGCGGTGTTGGTTC------------------------------CGGCGATCGTTACATCACCGGAAACGGTGGTGGAGTTGGCGCCGGTGATCGTTACACCACCGGAAACGGTGGTGGAGTCGGCGCTGGCGATCGTTACACCACCGGAAACGGCGGTGGAGTTGGCG------------------------------------CCGGCGGTCGTTATACCACCGGAAACGGTGGAGC----------------------------------CGTCGGTGGCGATCGTACGGGAGCCG---------------GC------------------------------------AGCGGTTACGGAATCGATGCCAGTGGCCAGTATCGCCCGGACAATGAGGGAACCTACACGAGCACCTACACGCAGACTGAGACCGGTTTTCCTGGGGCCATTCCATATCATCCAGGTTAGCCC
dm3 chr3L:5535583-5536005 - G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGATCGCACTGGCCTGGGCGACGGTTCCGGAAAC---GGTTC------------------------------CGGTGATCGCATCAGCACCGGAAACGGTGGCGGTGCCGGTGC------------------------------CGGCGATCGTTATATCAGCGGAAACGGAGGCGGCGTCGGTGCCGGCGACCGTTATGTCACCGGAAACGGTGGCGGCGTCGGTGCTGGCGACCGTTACACCACCGGAAACGGTGGTGCCGCCGGCT------------------------------------CTGGCGATCGTTATACCGCCGGAAACGGCGGT-----CGCTATAACACCGGAAACGGTGGCGCTGTTG-----GTGGCGATCGTACGGGCACGGGTGCCG---------CC------------------------------------AGCGGTTTCGGAATCGAAGCCAGTGGCCAGTATCGCCCGGATAATGAGGGAACCTACACGAGCACCTACACGCACACAGAGACCGGTTTTCCTGGGGCCATTCCATACACTCCAGGTTAGCCC
droSim2 3l:5448562-5448987 - GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG------------------------------------------GCGACCGTACTGGCCTGGGCGGCGGTTCCGGAATC---GGTTC------------------------------CGGTGATCGCATCAGCACCGGAAACGGTGGCGGTGCCGGTGC------------------------------CGGCGATCGTTATATCAGCGGAAACGGAGGCGGCGTCGGTGCCGGCGACCGTTATGTCACCGGAAACGGTGGCGGCGTCGGTGCTGGCGACCGTTACACCACCGGAAACGGTGGTGCCGCCGGCT------------------------------------CTGGCGATCGTTATACCGCCGGAAACGGTGGT-----CGCTATACCACCGGAAACGGTGGCGCTGTTG-----GTGGCGATCGCACGGGCGCGGGTGCCG---------CC------------------------------------AGCGGTTTCGGAATCGAAGCCAGTGGCCAGTATCGCCCGGATAATGAGGGAACCTACACGAGCACCTACACGCACACAGAGACCGGTTTTCCTGGGGCCATTCCATACACTCCAGGTTAGCCC
droSec2 scaffold_691:667-991 + GCGCGTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGTGGTGGCGTCGGCAGCGGCGCCGGCGTC---GGCCG------------------------------CGGCGGTGTCGGC---------------AGTGGCGCCTGCGCTGGCGTCATCCGTGGT---GGTGTCGGTGGCGGTGAC---TGCGTCGCC------------------------------------------GTCATCCGTGGTGGTGTCGGTGGCGGTGACCGCGTCGCCGTC---ATCCGTGGTGGTGTCGGTG------------------------------------GCGGTGACCGCGTCGCCGT---CATCCGTGGTGGTGT-------------------------------CGGTGGCGGTGACTGCGTCGGCGGCG---------------GCGGCTGTCGTGGC------------------------------GGCGGCGTCAACGGCAACGGCGG---CTGCGGCGGCGGTGGTCGAGTCGGCGGCGGCGTCAACGGCAAT---------------------------------------GGTGGCTGC
droYak3 3L:6098943-6099278 - G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGATCGCACTGGCCTGGGCGCCGGTTCCGGAATC---GGTTC------------------------------TGGTGATCGCATTAGCACCGGAAACGGCGGCGGTGTCGGTGC------------------------------TGGCGACCGTTACACCACC------------------------------------------GGAAACGGTGGCGGTGTCGGTGCTGGTGACCGTTACACCACCGGAAACGGTGGTGCTGCCGGTT------------------------------------CCGGCGATCGCTATACCACCGGAAACGGTGGCGCCGT-------------------------------TGGCACT------------------G---------------GC------------------------------------AGCGGTTTCGGAATCGGAGCCGGTGGCCAGTATCGCCCGGATAATGAGGGAACCTACACGAGCACCTACACGCACACAGAGACCGGTTTTCCTGGGGCCATTCCATACACTCCAGGTTAGCCC
droEre2 scaffold_4784:8222209-8222511 - G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGATCGCACTGGCCTGGGCGGCGGTTCCGGAATC---GGTTC------------------------------CGGTGATCGCATCACCACCGGAATCGGCGGCGGT------------------------------------------------------------------------------------------------------------------GTCGGTGCTGGCGACCGTTACACCACCGGAAGCGGTGGTGCCGCCGGCT------------------------------------CCGGCGACCGTTATACCACCGGAAGCGGTGGCGCCAT-------------------------------TG---GTGGCGATCGCACGG---------------------GC------------------------------------AGCGGTTTCGGAATCGAAGCCAGTGGCCAGTATCGCCCGGATAATGAGGGAACCTACACGAGCACCTACACGCACACAGAGACCGGTTTTCCTGGGGCCATTCCATACACTCCAGGTTAGCCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TCGCCCTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATGGTGGCAACATC---GATGA------------------------------CGGTGATGCCAACCATCCAGGTGCCGGTGATGGCAACCGTCCAGGCACCGGTTACAATACAGGTGCCGGTGATGGCAACCGTCCAGGCGCCGGTTACAATACAGGT------------------------------------------GCCGGTGATGGCAACCGTCCAGGCACCGGTTACAATACAGGTGCCGGTG------------------------------------ATGGCAACCGTCCAGGCACCGGTTACAATACAGGTGC-------------------------------CGGTGATGGTAACCGTCCAGGCGCCA---------------GTTACAATACTGGCAGCGGCGTCGGTGGCCGCCCGGGCAGCGGTAATGGCGGCTATAACGGCAACCAGAA------CGGCAATAATGGTGCCTACAC---------TCCAGACACAAATACCGGTTTTCCTGGGGCCATCAAATACACTTCAGGTTAGATCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAGAA------CGGCAATAATGGT........................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATAATGGTGCCTACAC---------TCCAGACAC..............................................2811.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCAACCGTCCAGGCA..........................................................................................................................................................................................................................................................................................................................................1930.331000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------------ATGGCAACCGTCCAGGCA............................................................................................................................................................................................................................................................1930.331000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GATGGCAACCGTCCAGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.331000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGTGATGGCAACCGTCCAGGC...........................................................................................................................................................................................................................................................................................................................................2440.251000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGTGATGGCAACCGTCCAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................2440.251000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GCCGGTGATGGCAACCGTCCAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.251000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGTG------------------------------------ATGGCAACCGTCCAGGC.............................................................................................................................................................................................................................................................2440.251000100000000000000000000000000000000000000000000000000000000000
droMoj3
CCGTCCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAAGGTTCCGGTGTT---GGTGA------------------------------CGGTGATACTACCGGACCCGGACCT---------------------------------------------------------------CTGGGCGGAGGCGATAGAATCCGTCCTGGTGG------------------TGGTGGCAATATCATTGATGGTAATGTCTATCGACCAGGTGACGGTGGTGCCTATCGCC------------------------------------CAGGTGGTGACCTGAATATCGGGGC-------------------------------------------CGGCTCTGGCGGCCGTCCGGGCGGGG---------------------------------------------------------------------GTAC---TGGTGGCTACCAACCCGACAACAGTGGCGCCTATACTGGAG---------ACACCAATACCGGTTTTCCTGGGGCAATCAAATACACATCAGGTTAGATCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CGGCGGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTACGGCGGCGGCGGCTATGGCGGTGGCGGCTACTCTGGTGGTGGCTACTCCGGCGGTGGTTACTCCGGTGGTGGC------------------------------------------------------------------------TACTCCGGC------GGCGGTGGCTATGGCGGCGGCGGCGGTTATGGCGGCGGCGGCGGTTATGGCGGCGGCCATGGCGGTCATGTCCAGGT---------------------CTACAAGGTCTACACAACCACTGTCCACACTGGCGGCGGCGGCGGTGGATACGGCGGCGGTGGCTACGGC-------------------------------------------------------------------------------------------------------------------------GGCGGTGGCTACGGCGGCGGTGGCTATGGTGGCGGCGGTCACGGTGGCTACAGCGGCGGTTACAGCAGCG---GCAGCAG------------------------------------TSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................................................................................................................................................................................................................TACGGCGGCGGCGGCTATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50110
droWil2
CCATCCGGATAATAATCCGTATAAACATGTTGTCGGCCCCAATGGCGGCAATGGAGGAAATGGCGATGGCGGCGGTAAAGGCGGCAATGGAGGCAATGGCGGTTTCGGTCCAAATGGCGGACCCGGCGGATTTGGCCCTAATGGACCACCTGGACCGCCCGGACCACCAGGACCATTAGGACCAAACGGCGCGGGAGGAGGAGGCCCAGGAAAACCGGTATATAGGGATG------------------------------------------GCGATCGCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTAGTGGGGCGGGTC------------------------------------------------------ATTACCATGGC------------------CT-------------------------------GGGTGATGCCAATGGCAAGGGTCAGGGTAATG---------CC------------------------------------AATGGCAATGGTAATGG---CGCCGGACCCTATCGTCCTGGCAATGAGGGAACCTACACAGAGACCTACACACAGACAGATACCGGTTTTCCTGGGGCCATTGTCTACGTACCAGGTTAGACCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................GGCAATGGAGGCAATGGCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
..................................................................................................................................................................................................................................................................................GATCGCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTAGTGGGGC...................................................................................................................................................................................................................................................................................................................................2011.00100010
...............................................................................GGCGGCAATGGAGGCAATGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
dp5
GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAGATCGCACAGGCCTGGGATCGGGTCAATATAATGCCAATGGCGATGCTACTGGTCCCGGCAGCGGCTCCGGTTTC---GGCTC------------------------------TGGCGATCGCTATAGCACTGGCAATGGC------------------------------------------------------------------------------------------------------------------AACGGCGTCGGTGCTGGCGATCGCTATAGCACTGGCAACGGCAACGGCGTCGGTG------------------------------------CTGGCGATCGCTATAGCACGGGAAGTGGTGCTGGAGT-------------------------------CGGTG---------------------------------------------------------------------------------CTGGAGTCGGTGCTGGCAGTGGCTATCGTCCTGGCGATGAGGGTACCTACACGAGCACCTACACGCACACCGATACCGGTTTTCCTGGGGCCATTGGATACGTATCAGGTTAGCCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATAGCACTGGCAACGGCAACGGCGTC......................................................................................................................................................................................................................................................................................................................2816.0060000000006
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGCACTGGCAACGGCAACGGCGTC......................................................................................................................................................................................................................................................................................................................2714.0040000000004
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTATAGCACTGGCAACGGCAACGGC.........................................................................................................................................................................................................................................................................................................................2713.0030000000003
.........................................................................................................................................................................................................................................................................................................................................................................ACTGGCAATGGC------------------------------------------------------------------------------------------------------------------AACGGCGTC................................................................................................................................................................................................................................................................................................................................................................2112.0020110000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGGAGT-------------------------------CGGTG---------------------------------------------------------------------------------CTGGAGTCGGT.........................................................................................................2711.0010000000001
...................................................................................................................................................................................................................................................................................................................................................................TATAGCACTGGCAATGGC------------------------------------------------------------------------------------------------------------------AACGGC...................................................................................................................................................................................................................................................................................................................................................................2411.0010000000001
..................................................................................................................................................................................................................................................................................................................................................................CTATAGCACTGGCAATGGC------------------------------------------------------------------------------------------------------------------AACGGC...................................................................................................................................................................................................................................................................................................................................................................2511.0010000000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCATTGGATACGTATCAGGTTAGC..2611.0010010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGCAACGGCAACGGCGTCG.....................................................................................................................................................................................................................................................................................................................2211.0010010000000
..................................................................................................................................................................................................................................................................................................................................................................CTATAGCACTGGCAATGGC------------------------------------------------------------------------------------------------------------------AACGGCGTC................................................................................................................................................................................................................................................................................................................................................................2811.0010000000001
droPer2
TCCCCCTG---------------------------------------------------------------------------------------------------------------------------------------------------------GACCCCCAGGACCCTTGGGCCCTGTCGGCGCGGGAGGCGGAGCCTCAGGAAAACCGGTATACAAGGATGGAGATCGCACAGGCCTGGGATCGGGTCAATATAATGCTAATGGCGACGCTACTGGTCCCGGCAGCGGCTCCGGTTTC---GGCTC------------------------------TGGCGATCGCTATAGCCCTGGCAATGGCAACGGC------------------------------------------------------------------------------------------------------------------GT-----------------------------------------TCGGTG------------------------------------CTGGCGATCGCTATAGCACGGGCAGTGGTGCT----------------------------------------------------------------------------------------------------------------------------GGAGTCGGTGCTGGCAGTGGCTATCGTCCTGGCGATGAGGGTACCTACACGAGCACCTACACGCACACCGATACCGGTTTTCCTGGGGCCATTGGATACGTATCAGGTTAGCCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGGCTATCGTCCTGGC.................................................................................2020.501100000
.......................................................................................................................................................................................................................................................................................................GGCTCCGGTTTC---GGCTC------------------------------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18130.081100000
droAna3
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCGGTTCCGGAATC---GGCGG------------------------------CGGTGATCGTTATACCACCGGAAACGGTGGCGGAGCTGGTTC------------------------------CGGCGATCGTTATTCCACCGGAAACGGTGGCGGACCTGGTTCCGGCGGTCGTTATACCACCGGAAACGGTGGCGGACCTGGTTCCGGCGGTCGTTATACCACCGGAAACGGTGGCGGAGTTGGCT------------------------------------CCGGCGATCGTTATACCACCGGAAACGGTGGCGGAGT-------------------------------CGGTACCGGCGATCGTATTTCCGTCGG---------------------------CTCCGGCGATCGTGTTTCAGTCGGCAGCGGTTCCGCAATCGCAGCCGGCGGTCAATACCGCCCCGGCAATGAGGGAACCTACACGAGCACCTACACGTACACCGAGACCGGTTTTCCTGGGGCCATCGCCTATCAAGCAGGTTAGCCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCCGCAATCGCAGCCGGCGGTC...............................................................................................2511.001010000
...............................................................................................................................................................................................................................................................................................................................................................................AACGGTGGCGGAGCTGGTTC------------------------------CGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTGTTTCAGTCGGCA..........................................................................................................................1811.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGGTTCCGGCGGTCGTTATAC............................................................................................................................................................................................................................................................................................................................................2620.501010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGGTTCCGGCGGTCGTTATAC......................................................................................................................................................................................................................................................................................................................................................................................2620.501010000
droBip1
CG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGATCGTATTTCCGTCGGCAGCGGTTCCGGAATC---GGTGG------------------------------CGGTGATCGTTATAGCACCGGAAACGGTGGCGGAAATGGCTC------------------------------CGGCGGTCGTTATACCACC------------------------------------------GGAAACGGTGGCGGAGTTGGTTCCGGCGACCGTTATACCACCGGAAACGGTGGTGGAATCGGCT------------------------------------CCGGCGATCGTTATACCACCGGAAATGGTGGCGGAGT-------------------------------CGGCTCCGGCGATCGGGTTTCCGTCG---------------GA------------------------------------AGCGGTTCCGCAATCGCCGCCGGCGGTCAGTACCGCCCCGGCAATGAGGGAACCTACACGAGCACCTACACGTACACCGAGACCGGTTTTCCTGGGGCCATCGCCTATCAAGCAGGTTAGCCCSizeHit CountTotal NormTotal
No Reads
droKik1
CAGGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG------------------------------------------GCGATCGTACAGGCACCGGCAGCGGTTCCGGAATC---GGTTC------------------------------CGGCGATCGC------------------------------------------------------------------------------------------------------------------------------------------------------------TACACCACCGGAAAAGGCGGTGCAGCCGGCT------------------------------------CCGGTGATCGCTATACCACCGGAAACGGTGGCGGCAT-------------------------------TGGCGGTGGCGATCGCACGGGAACGG---------------GT------------------------------------AGCGGTTCCGGAATCGGCGCCGGCGGCCAGTATCGGCCGGGCAATGAGGGAACCTACACGAGCACCTACACGCACACAGAGACCGGTTTTCCTGGGGCCATCGCATATCAAGCAGGTTAGCCCSizeHit CountTotal NormTotal
No Reads
droFic1
CGGTTCCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGATCGCATCACCACCGGAAATGGTGGTGCTTACGGATC------------------------------CGGTGATCGCATTTCCACCGGAAACGGTGGCGGAGTCGGTTCCGGCGATCGCATTGGCACCGGAAACGGCGGTGCCTACGGTTCCGGCGATCGCATCTCCACCGGAAACGGTGGTGCGTACGGCT------------------------------------CCGGCGATCGCATTACCACCGGAAACGGTGGT-----CGCTACAAGCCCGGAAA--------------CGGTGGTGCCGATGGCACCGGAACCGGAATCG---------GA------------------------------------AGCGGTTACGGAATCGATGCCAGTGGCCAGTTCCGCCCGGACAACACGGGAACCTACACGAGCACCTACACGCACACAGAGACCGGTTTTCCTGGGGCCATTCAGTATCATCCAGGTTAGCCCSizeHit CountTotal NormTotal
No Reads
droEle1
TGGACC------------------------------------------------------------------------------------------------------------------------------------AAATGGACCAAACGGACCACCGGGACCACCTGGCGGCTTGGGTCCGGTCGGCGCGGGAGGAGGAGCCTCAGGAAAACCGGTCTACAAGGATG------------------------------------------GCGATCGCACTGGCCTGGGCAGCGGTTCCGGAATC---GGTTC------------------------------CGGTGATCGCATTAGCACCGGAAACGGTGGCGCT------------------------------------------------------------------------------------------------------------------GTCGGTTCCGGCGATCGTTACACCACCGGCAACGGTGGTGGCAGTGGCG------------------------------------CCGGCGGTCGCTATACCACCGGAAACGGTGGCGGCGT-------------------------------CGGCGGTGGCGATCGCACGGGAACGG---------------GC------------------------------------AGTGGCTTCGGAATCGCTTCCGGCGGCCAGTACCGCCCGGAGAATGAGGGAACCTACACCAGCACCTACACGCACACCGAGACCGGTTTTCCTGGGGCCATTCCATACACTCCAGGTTAGCCCSizeHit CountTotal NormTotal
No Reads
droRho1
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGATCGCACTGGCCTCGGCAGCGGTTCCGGAATC---GGGTC------------------------------CGGTGATCGCATTTCCACCGGAAACGGTGGCGCT------------------------------------------------------------------------------------------------------------------GTCGGTTCCGGCGATCGTTACATCACCGGAAACGGTGGTGGAAGTGGCG------------------------------------CCGGCGGTCGCTATACCACCGGAAACGGTGGCGGCGT-------------------------------CGGCGGTGGCGATCGCACGGGAACTG---------------GC------------------------------------AGCGGTTTCGGAATCGCGGCCGGTGGTCAGTACCGCCCGGGAAATGAGGGAACCTACACCAGCACCTACACGCACACAGAGACCGGTTTTCCTGGGGCCATTGCATATCATCCAGGTTAGCCCSizeHit CountTotal NormTotal
No Reads
droBia1
CTCCACCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAACGGTGGCGGCGTC---GGTGC------------------------------AGGCGACCGTTACT------------------------------------------------------------------------CCACC------------------------------------------GGAAACGGTGGCGGCGTCGGTGCCGGCGATCGTATCACCACCGGAAACGGTG------------------------------------------------------GTCGCTATACCACAGGAAACGGTGGCGGCGT-------------------------------CGGTGGTGGCGATCGCACCG---------------------GA------------------------------------AGCGGTTTCGGAATCAATGCCGGTGCCCAGTATCGCCCGGACAATGAGGGAACCTACACGAGCACCTACACGCAGACCCAGACCGGTTTTCCTGGGGCCGTTCCATATCATCCAGGTTAGCCCSizeHit CountTotal NormTotal
No Reads
droTak1
GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG---------------------------GTGTT---GGCGG------------------------------TGGTGTTGGCGGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCCGGTG------------------------------------GTGGT---------------------GGTGGCGGGGT-------------------------------T---------------------------ACTGCCGGTGGTGGC------------------------------------GGCGGT---------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CGGTTCTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGATCGCATTAGCACCGGTAACGGTGGCGGTGTTGGTTC------------------------------CGGCGATCGTTACATCACCGGAAACGGTGGTGGAGTTGGCGCCGGTGATCGTTACACCACCGGAAACGGTGGTGGAGTCGGCGCTGGCGATCGTTACACCACCGGAAACGGCGGTGGAGTTGGCG------------------------------------CCGGCGGTCGTTATACCACCGGAAACGGTGGAGC----------------------------------CGTCGGTGGCGATCGTACGGGAGCCG---------------GC------------------------------------AGCGGTTACGGAATCGATGCCAGTGGCCAGTATCGCCCGGACAATGAGGGAACCTACACGAGCACCTACACGCAGACTGAGACCGGTTTTCCTGGGGCCATTCCATATCATCCAGGTTAGCCCSizeHit CountTotal NormTotal
No Reads
dm3
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGATCGCACTGGCCTGGGCGACGGTTCCGGAAAC---GGTTC------------------------------CGGTGATCGCATCAGCACCGGAAACGGTGGCGGTGCCGGTGC------------------------------CGGCGATCGTTATATCAGCGGAAACGGAGGCGGCGTCGGTGCCGGCGACCGTTATGTCACCGGAAACGGTGGCGGCGTCGGTGCTGGCGACCGTTACACCACCGGAAACGGTGGTGCCGCCGGCT------------------------------------CTGGCGATCGTTATACCGCCGGAAACGGCGGT-----CGCTATAACACCGGAAACGGTGGCGCTGTTG-----GTGGCGATCGTACGGGCACGGGTGCCG---------CC------------------------------------AGCGGTTTCGGAATCGAAGCCAGTGGCCAGTATCGCCCGGATAATGAGGGAACCTACACGAGCACCTACACGCACACAGAGACCGGTTTTCCTGGGGCCATTCCATACACTCCAGGTTAGCCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACGCACACAGAGACCGG.....................................2015.0050000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACGCACACAGAGACCG......................................1914.0040000000000000000000000000000000000000000000000000000000003100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CGGTGCCGGTGC------------------------------CGGCGATCGTTATAT................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTG-----GTGGCGATCGTACGGGG....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACGCACACAGAGACCGG.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TGGCGGTGCCGGTGC------------------------------CGGCGATCGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................CATCAGCACCGGAAACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GGCGGTGCCGGTGC------------------------------CGGCGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGTCACCGGAAACGGTGGCGGCGT.................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAGACCGGTTTTCCTGGGGCCA.......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGTTTCGGAATCGAAGCCAGT...................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCTGTTG-----GTGGCGATCGTACGG......................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG------------------------------------------GCGACCGTACTGGCCTGGGCGGCGGTTCCGGAATC---GGTTC------------------------------CGGTGATCGCATCAGCACCGGAAACGGTGGCGGTGCCGGTGC------------------------------CGGCGATCGTTATATCAGCGGAAACGGAGGCGGCGTCGGTGCCGGCGACCGTTATGTCACCGGAAACGGTGGCGGCGTCGGTGCTGGCGACCGTTACACCACCGGAAACGGTGGTGCCGCCGGCT------------------------------------CTGGCGATCGTTATACCGCCGGAAACGGTGGT-----CGCTATACCACCGGAAACGGTGGCGCTGTTG-----GTGGCGATCGCACGGGCGCGGGTGCCG---------CC------------------------------------AGCGGTTTCGGAATCGAAGCCAGTGGCCAGTATCGCCCGGATAATGAGGGAACCTACACGAGCACCTACACGCACACAGAGACCGGTTTTCCTGGGGCCATTCCATACACTCCAGGTTAGCCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGCGTCGGTGCTGGC.......................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT------------------------------------CTGGCGATCGTTATACCGCC..........................................................................................................................................................................................................................................................2311.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGCGCGGGTGCCG---------CC------------------------------------A..........................................................................................................................1811.00100000100000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------CTGGCGATCGTTATACC.............................................................................................................................................................................................................................................................1811.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCGATCGTTATACCGC...........................................................................................................................................................................................................................................................1911.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTACACGAGCACCTACACG...................................................2211.00100000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCGGTTTTCCTGGGGCC........................2011.00100000100000000000
droSec2
GCGCGTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGTGGTGGCGTCGGCAGCGGCGCCGGCGTC---GGCCG------------------------------CGGCGGTGTCGGC---------------AGTGGCGCCTGCGCTGGCGTCATCCGTGGT---GGTGTCGGTGGCGGTGAC---TGCGTCGCC------------------------------------------GTCATCCGTGGTGGTGTCGGTGGCGGTGACCGCGTCGCCGTC---ATCCGTGGTGGTGTCGGTG------------------------------------GCGGTGACCGCGTCGCCGT---CATCCGTGGTGGTGT-------------------------------CGGTGGCGGTGACTGCGTCGGCGGCG---------------GCGGCTGTCGTGGC------------------------------GGCGGCGTCAACGGCAACGGCGG---CTGCGGCGGCGGTGGTCGAGTCGGCGGCGGCGTCAACGGCAAT---------------------------------------GGTGGCTGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------CGGTGGCGGTGACTGCGTCGGCGG..................................................................................................................................................................................2560.1711000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTCGGTGGCGGTGACC...................................................................................................................................................................................................................................................................................................................................................1980.1311000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTCGGTG------------------------------------GCGGTGACC.....................................................................................................................................................................................................................................................................1980.1311000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGGCAACGGCGG---CTGCGGCGGC.................................................................................26140.0711000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGGCAACGGCGG---CTGCGGCGG..................................................................................25140.0710010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCAACGGCGG---CTGCGGCG...................................................................................21160.0611000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGGCAACGGCGG---CTGCGG.....................................................................................22170.0611000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCGTCAACGGCAACGGCGG---CT.........................................................................................24170.0611000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT-------------------------------CGGTGGCGGTGACTGCG.........................................................................................................................................................................................21200.0511000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCGGTGGCGGTGAC---TGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0511000
droYak3
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGATCGCACTGGCCTGGGCGCCGGTTCCGGAATC---GGTTC------------------------------TGGTGATCGCATTAGCACCGGAAACGGCGGCGGTGTCGGTGC------------------------------TGGCGACCGTTACACCACC------------------------------------------GGAAACGGTGGCGGTGTCGGTGCTGGTGACCGTTACACCACCGGAAACGGTGGTGCTGCCGGTT------------------------------------CCGGCGATCGCTATACCACCGGAAACGGTGGCGCCGT-------------------------------TGGCACT------------------G---------------GC------------------------------------AGCGGTTTCGGAATCGGAGCCGGTGGCCAGTATCGCCCGGATAATGAGGGAACCTACACGAGCACCTACACGCACACAGAGACCGGTTTTCCTGGGGCCATTCCATACACTCCAGGTTAGCCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................CACC------------------------------------------GGAAACGGTGGCGGTGTC................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGGTTTTCCTGGGGCC........................1911.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGTGGCGCCGT-------------------------------TGGCACT------------------G---------------.................................................................................................................................................................2311.00100100000000
...........................................................................................................................................................................................................................................................................................GGCCTGGGCGCCGGTTCCGGAATC---GGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
droEre2
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGATCGCACTGGCCTGGGCGGCGGTTCCGGAATC---GGTTC------------------------------CGGTGATCGCATCACCACCGGAATCGGCGGCGGT------------------------------------------------------------------------------------------------------------------GTCGGTGCTGGCGACCGTTACACCACCGGAAGCGGTGGTGCCGCCGGCT------------------------------------CCGGCGACCGTTATACCACCGGAAGCGGTGGCGCCAT-------------------------------TG---GTGGCGATCGCACGG---------------------GC------------------------------------AGCGGTTTCGGAATCGAAGCCAGTGGCCAGTATCGCCCGGATAATGAGGGAACCTACACGAGCACCTACACGCACACAGAGACCGGTTTTCCTGGGGCCATTCCATACACTCCAGGTTAGCCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGAAGCGGTGGTGCCGC.......................................................................................................................................................................................................................................................................................................................2011.0010100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGATCGCACGG---------------------GC------------------------------------AGCGGTT....................................................................................................................2211.0010100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACGG---------------------GC------------------------------------AGCGGTTTCGGAATCGAAGC.......................................................................................................2911.0010100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCGTTATACCACCGGAAGCGGT.................................................................................................................................................................................................................................................2511.0010001000

Generated: 05/19/2015 at 09:45 PM