ID:

dvi_1944

 Coordinate:

scaffold_12726:1689957-1690107 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.8 -18.7 -18.7

Flybase annnotation

exon [dvir_GLEANR_15542:3]; CDS [Dvir\GJ15219-cds]; intron [Dvir\GJ15219-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTCAAGAATATTTATTCTACGATCTTTAATGTGCATTCCTTTTGTGTGCCGTGCGGCATTTGTTGCTGTTGTTTTTTGTACTAAAGTCGCGCCGTTTGTCTTGTTCTCTTATTTTTGCCAACACTACATACGCACATACTTTCACACACCCACACACACACACTCACACGCACACGCACACGCACATATATAAACGTACAGAGGAGGATCTGAAGCGTCTGCAACAGGAGACATCCGGTGGCAACTATAGC
**************************************************(((((.....((((((((((((....(((...(((((.....(((.(((..((((..............))))..))).))).....)))))...)))...)))...........))).))).)))....)))))................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 GSM1528803
follicle cells		 SRR060663
160_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060678
9x140_testes_total
 SRR060687
9_0-2h_embryos_total
 M061
embryo
 V047
embryo
 SRR060667
160_females_carcasses_total
...................................................................................................................................................................................................................GAAGCGTCTGCAACAGGAGACATCCGGT............ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GTCTGCAACAGGAGACCTCCGGTG........... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CTGCAACAGGAGACATCCGGT............ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................GTCTGCAACAGGAGACATCCGGTG........... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................CTTATTTTTGCCAACACTAC............................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GGAGGATCTGAAGCGTCTGCAA........................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ATCTGAAGCGTCTGCAACAGGA...................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................CTGAAGCGTCTGCAACAGGA...................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................CTACATACGCACATACTTT............................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
........TATTTATTCTACGATCTTT................................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GGAGGGTCTGACGCGTCTGGAA........................... 22 3 2 0.50 1 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................ATGAGGATCGGAAGCGTCTAC............................. 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0
...................................................TGCGGCATTTGTTGGTGTTC.................................................................................................................................................................................... 20 2 4 0.25 1 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................CTCACACGCACGCGCACGCGC.................................................................... 21 2 20 0.05 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CAGTTCTTATAAATAAGATGCTAGAAATTACACGTAAGGAAAACACACGGCACGCCGTAAACAACGACAACAAAAAACATGATTTCAGCGCGGCAAACAGAACAAGAGAATAAAAACGGTTGTGATGTATGCGTGTATGAAAGTGTGTGGGTGTGTGTGTGTGAGTGTGCGTGTGCGTGTGCGTGTATATATTTGCATGTCTCCTCCTAGACTTCGCAGACGTTGTCCTCTGTAGGCCACCGTTGATATCG
**************************************************(((((.....((((((((((((....(((...(((((.....(((.(((..((((..............))))..))).))).....)))))...)))...)))...........))).))).)))....)))))................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 V053
head
 SRR060682
9x140_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060673
9_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060657
140_testes_total
 SRR060662
9x160_0-2h_embryos_total
 V047
embryo
 V116
male body
...............................................................................................................................TAGGGGTGTAGGAAAGTGTG........................................................................................................ 20 3 19 0.26 5 5 0 0 0 0 0 0 0 0 0
...............................................................................................................................TATGGGTGTAGGAAAGGGTG........................................................................................................ 20 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................AGGCGTGTAGGAAAGGGTG........................................................................................................ 19 3 20 0.10 2 0 0 1 0 0 0 0 1 0 0
..............................................................................................................................TTATGGGTGTAGGAAAGTG.......................................................................................................... 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................TAGGGGTGTATGAAAGGGTG........................................................................................................ 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................GCGGGAAACAGAACAATA................................................................................................................................................ 18 2 12 0.08 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................GTCTGTAGGCTACCGTTGAA.... 20 3 13 0.08 1 0 0 0 0 1 0 0 0 0 0
.........TAAAGAAGAGGCTAGACATT.............................................................................................................................................................................................................................. 20 3 18 0.06 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................GGTGTGTGTGTGTGAGTG.................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................GTATGCGTGTATGGTAGAGT......................................................................................................... 20 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................GTGTGAGTGTGCGTGTGCGT......................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1
....TCTTATAAATAAGTGGCTC.................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................TGTGTGTGTGTGAGTGTGCGT............................................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12726:1689907-1690157 - dvi_1944 GTCAAG---AATATTTATTCTACGATCTTTAAT------------GTGCATT-------------------------------------------------CCTTTTG-----TGT--------------------------------------------------------------------------------------------------------------------------------GCCGTGCGGCA---------------------------TTTGTTGCTGTTGTTTTTTGTACTAAAGTCGCGCCGTTTGT---CT--T--------------------------------------------------------------------------------------------------------------------------------GTTCTCTTATTT------------------TT--------------------------------------------------------GCCAACACTA-------------------------------------------------------------------------------CA--------TA---------------------------------C----------GCACATAC---------------------------------TTTCACA----C--------------ACCCACACACACACACTCA--------CACG--C--AC------------------------AC------------GCACACGCAC--AT------------------AT--------ATA--A--------------ACGT--AC--AGAGGAGGAT-------------CTGAAGC--GTCTGCAACAGGAGACATCCGGTGGCAACTATAGC-
droMoj3 scaffold_6473:6831645-6831940 + AAACT--------------------------------------------------------------------------------------------------------------------------TAATCTATGAATTTC-----------ATGCGTTTT----------TGAATCAGAGTATTCCGTTATCTCTGC-CCTAGTGGCTCGC-------------------------------GCTGT---------------------------TTGATATTCGCTGGTATTGT----TGTACTAAAGTCGCTACGTTT---GTCTTGT--------------------------------------------------------------------------------------------------------------------------------GTTTTCTTATTT------------------TT--------------------------------------------------------GCCAACACT--------------------------------------------------------------------------------CA--------TA---------------------------------T----------GCACATAT---------------------------------TGCCACACTGAC------AC--ACA--------------------------C----C--G--ACACAC------ACT--C--ACGCAACCGCAACCGCAATTC----------------AACTCGCAC----------------TCCATCATCGACATACACTCACCT--AC--AGAGGAGGAT-------------CTGAAGC--GCCTGCAGCAGGAGACGTCGGGCGGCAACTATAGC-
droGri2 scaffold_15203:7988753-7988994 - GTCAAA---AA-GCTTAT----------------------------------------------------------------------------------------------------------------TCTATGAA--------------TATTTCTGTAATTCATTTCT--------------------CACGTCTGGCTAAATAT--T-AATGTTTTTTGCTT-------------------------------------------------------------------------TGTACTAAAGTCTCG-CGTTT---GTGTTGT--------------------------------------------------------------------------------------------------------------------------------GTTTTCTTATTT------------------TT--------------------------------------------------------GCCAACACTC-------------------------------------------------------------------------------CA--------TA---------------------------------C----------TCG---------------------------------C--ACACTCACA----C----------TGACAT------------TCG------------CA--C--ACATAC------ACACAC--AC----------------------A--------CACAC------------------ACACACACA------------------TGT--AC--AGAGGAGGAT-------------CTGAAGC--GTCTGCAGCAAGAAACATCGGGCGGCAACTATAGT-
droWil2 scf2_1100000004590:1181828-1182108 + GTCGCG---CACTCT----------------------------CTCTCTCTATCTCTCTCGCTCACTCGCTCGTTCCCTTTCTCACTTTTTCTCTTTTTCTAATTTTG-----TGTGCATTTTGTCA---------------------------------------------------------------------------------------------------------------------------------------TAGATTTTTG----------------------------TATACTAAAGTCAATTTTTGT---CTCTTAT--------------------------------------------------------------------------------------------------------------------------------GTTCTCTTATTT------------------TT--------------------------------------------------------GCCCACAAACCACGATATCGAT--ATCATATTCGAAATCTTGTCACAAAAAAAAAAAAAAAACCCAAAACG---------------------------------A----------------AAA-------------AATTACA---------------------------------------------------------------CACA-------------------------------------------------------------------------------------------------------------------------------------------------CC--AGAGGAGGAT-------------CTCAAGC--GTTTGCAACAGGAGACATCTGGCGGAAGCTATTCC-
dp5 XR_group6:6328500-6328711 - TGTGG-------------CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTTGTTGTTGTTG---------------------------------------TTGTAATTTCATTTAATAAATGTTTTCGCCT-------------------------------------------TTTC----TTGTTGTTGTTTTTGCTGCTG--------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTGGAAACATTTGCCGACGGCTGT--------CG-------------------------------------CTTCATTTCA---------------------------------C--ACACCCAAA----C----------ACAC------------GCGCACACACACAC----------ACACACACAC--A----C--AC----------------------AC------AC--AC------------------ACGCACACA------------------------T--GCCGGAAGTT-------------GAGCAGC--GCGTGAGGCAGAAGGCA-------------------
droPer2 scaffold_13:833644-833825 + ACTGTG---TG-------------GCCTTCGAT------------GC------------------------------------------------------------------------------------------------------------------------------------------------------GCTGCTGCTGCTGCTGTTTGTTGTTTGCCTTGGAT-------------------------------------------------------TGCAATTGT--------------------CGTTT---GTGTTGT--------------------------------------------------------------------------------------------------------------------------------TTTTGTTGTCGTTTGTCGCTTTTCCT-TCTTC--------------------------------------------------------C--ACTTCTT-------------------------------------------------------------------------------CA----CA--C-T-------------------------------------------ACGTT-----------------------------AAT----TTCCACA------CACACACA----------------------------CACACACA--C--ACAC--------A----C--AC----TC------------GCGC--------GC--GC--------------AC--ACACACATA----------------------------------------------------------------------------------------------A
droAna3 scaffold_12613:196852-197027 + ATGAA-------------CTGCTCTTTTTTGGTGCT------------TTTT-------------------------------------------------TTTTTGAGAGGGGGTATTTTTTGTTA--------AAAAGTTAAATTATGAAAATGTCAAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC----AATATACATGTGTCATATATG-----------------------------------------------------------------T----------------------------------------------GA---------------------------------GG--CACTCCCA----CACACACACATACACA----------------------C------------AC--ACAT-C--A----CACAT----AT-----------TACACACATACATAT------------------ATAAA--------------------------TGA----ATAA-----------------------------------------------------------------A
droBip1 scf7180000396733:558527-558717 - ATCAAG---AGTGAATA--------------------------------------------------------------------------------------------------------------AAACCCGCTAATCAC-----------TCACGCACA----------CTAGAAAGTGAA----------------------------------CTTTTCCGC---------------------GAACTG----------------------------------------------------------GT--AACTTGAC--------------------------------------------------------AATTTTTTACCA-------------------------------------------TTTA----TT--------------------------------------------------------------------------------------------------------------------------------------------------GTAAAAAAAAAAGCTGCATTGCGAAGG---------------------------------A----------------AAA-------------ACTTTTTCGCA---------------------------------C--TTACTCCAA----C----------TCAC------------ACACACA----------CA--CACAAACAT------ATAT--------------------------------GTATAT------------------ATATATATATATA-----------------------------------------------------------------------------------------------
droKik1 scf7180000302388:1945972-1946104 + ATTTG-------------CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGGTT--------------------------------------------------------------------------------------------------------------------------------TTGTTTGAACTG------------------GGGGCTTTTTTTGTGGTTCTGTGGTTCGA-----------------------------GGAAATAAG-----------------------------------------------------------------------------------------------A----------------AAA-------------ACGATTTTTCA---------------------------------CACACACACACA----C----------ACACAC------------ACA------------CA--C--ACACAC------ACACAC--AC------------------------------ACACAC------------------ACACACACA-----------------------------------------------------------------------------------------------
droFic1 scf7180000454066:2612365-2612600 - GTCACG---CATATTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTTGTATGTGATCCCCACTTTTGTTCGCTGCGAAACTTGCTGCAGCATTTCGCTGGCAGACAATGGCTTGAACTTT----TGCACCCAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTT------------------TT--------------------------------------------------------GCCGACAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACACTCTCA----C------------TCTC----------ACACACA----------AA--C--AC--ACA--CACA----C--AC----AC------------A------------C--TC----AT--------AC--ACATAGATA--A--------------ACCGCCAT--AGGGAAGGCA-------------GTGACTTTTGTCTGCAGCTGA--TCCTTCGGCGGCAA---TTGT-
droEle1 scf7180000491013:603078-603283 - GTTAAGGGGAGTCCCCATTCTCCAATCTCCAAT------------CTCCATT---------------------------------------------------------------------------------------------------------------------TCC--------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------------------------------------------------------------------------------------------ATTCCCTCATTC------------------TAGT--GTTTGT------------TTGGACAAAGCCAGAGGAGCTGGCATATTTCTTGGCCCACACA--------------------------------------------------------------------------------CA--------CA---------------------------------C----------ACACACACACACACATGTCTAGAACAGAATGGCCAACACACACACAC----------------ACACA----------------------CACACACA--C--ACAC------------------------------------ACACACACACACAC------------------ACACA--------------------------CAC----ACAG-----------------------------------------------------------------A
droRho1 scf7180000779468:105951-106110 + TCCTT--------------------------------------------------------------------------------------------------------------------------TTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGTGGCACGGGGT----------------------------CCAAATGTAT---------------------TTTGCATCATTTGTCTTAGCCAGGCCAA------------------------------------------------------------GGATCTCTTTCCCTATCTTT--------------------------------------------------------A--ACTCCCA-------------------------------------------------------------------------------CA--------------------------------------------------------------------------------------------CACACACACA----C----------ACAC------------ACACACACA--CAC----A------CACACACAC--A----C--AC------------------ACACACACA--------C------------------ACACACACA------------------GAT----ACAG-----------------------------------------------------------------A
droBia1 scf7180000302428:10392982-10393128 - GTGTT--------------------------------------------------------------------------------------------------------------------------TTTGTTGTTG-----------------------------------------------------------------------------------------------------------GGCGCG------------------------------------------------------------------------------------------------------TGAAACTCGTCGTACGCTGTTTTTTTAATGCTCTTCTCCG-------------------------------------------TTTC----TCTTCT----------TCTT------TT------------------TT--------------------------------------------------------GCATACACTT-------------------------------------------------------------------------------T-------------------------------------------------------GCG-----------------------------------CACACACAC------------ACGCACACAC------------TGA------------CA--G--AGACAC------ACTCGC--AC------------------------------ACACAG------------------GCACAGACA-----------------------------------------------------------------------------------------------
droTak1 scf7180000415704:532445-532562 - TGTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGTCGCACCATTCGATGTGTTCT--------------------------------------------------------------------------------------------------------------------------------CTGCTCTTATTT------------------TGGCCCGATTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT--------CCT--GC--AGAGGAGGAC-------------CTCAAGC--GGCTGCAGCAGGAGACCTCCGGCGGCAACTACAGC-
droEug1 scf7180000409095:169797-170002 + ATATC--------------------------------------------------------------------------------------------------------------------------TTTTTTATGAAATTTAAAACGTAAGCATACTTCTA----------GCAACCACTGTGTCGCATTTTCTGTTCGGTTAGAGACGTCAGTTGTTTTTCCCGC---------------------TGCCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----TTGTTGCTGCTTTTGTTGTTGTTTATGT------------------TG--------------------------------------------------------CTCA-CGGTT-------------------------------------------------------------------------------TT--------TG---------------------------------T----------GCA---------------------------------C--ACACTCAAA----C----------ACAC------------ACACGCA----------CACCG--ACACAC------ACAC--------------------------------ACACAC------------------ATATACACCCACA-----------------------------------------------------------------------------------------------
dm3 chrX:13826422-13826601 - ATTCG--------------------------------------------------------------------------------------------------------------------------GTTTTTGTGCAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATCTTTGCCAGAGCGGTGTTATATTTGTGTTCTATTTGCCGCTGCCTGCT--------------------------------------------------------------------------------------------------------------------------------------------------GCATAAGCAAA--------------------------------------------C-AGGGTGAGTCAAGTCGCGTGAAATCGCATATAGTGCACGA----TCA---------------------------------C--ACACACACA----C----------ACACAC------------ACA------------CA--C--ACACAC------ACGCAC--GC------------------------------ACACAA------------------GCGCACACA----------------------------------------------------------------------------------------------T
droSim2 2l:12113858-12114009 - CC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCACCA-------------------------------------------------------------------------------CA------------------------------------------------------------------------------------------C--ACACGCAAA----C----------ACAC------------ACACACGCAAACAC----------ACACACACTC--A----TACGC----A----------TTTA----------------CACACACAC----------------ATCCATA-CGAAA--------CAC--AC--ACAGATAGACTGCACGCTAACAGCGGCTGC--GGCTGGCGCTGTTAACGTCCGCTGTTAACTCGAAG-
droSec2 scaffold_37:292356-292501 - TGCATG--------------GCGCAGTGCAGGGGTTGTGATCGTTTTAGGGGGTGAATGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATTTTT---CA--T----------------------------------------------------------------------------------------------------------------------------------------AATC------------------TC--------------------------------------------------------GTAAGCACT------------------------------------------------------------------------------------------C----------------------------------------------CA---------------------------------CGCACACTCACA----C----------ACAC------------ACACACA----------CA--C--AC--AC------ACACAC--AC----AC------------A------------C--AC----AC------------ACACACAAAAGG--------------ACGA--AAAGGA-----------------------------------------------------------------G
droYak3 3R:21478314-21478489 - TTTTT-------------TTTGCTGTTTTCATC------------TTGTTTT-------------------------------------------------TTGTTTGTGTTTGGCAC--------------------------------------------------------------------------------------------------------------------------------TTT---------------------------TTGG---------CATTCGTTTTTTATTCTTGTTGCACGCTGTTCGG---TT--C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCATCA-------------------------------------------------------------------------------CATTCACACAC---------------------------------------------TTA---------------------------------C----------A----C----------ACAC------------TTACTCATT--CAC----------TCACACACAC--A----TACAC----------------------AC------GC--ACACTCTCACGCGCGTAA----------------------------------------------------------------------------AGAAATATAC--------------------
droEre2 scaffold_4690:6377349-6377486 - TCGTCG---CCATCG----------------------------TCTCATTTATTGCTTGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTTGG---CA--CGTTCCCTTGTGGTTTGCAGCGTGAAA------------------------------------------------------------------------------------------------------------TAAGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCAA----CACACACACACACACA----------------------CACACAGG--C--AC------------------------CC------------GCACACACAC--AC------------------------AGATACA------------------GAT--ACAGCG-----------------------------------------------------------------G

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GTCAAG---AATATTTATTCTACGATCTTTAAT------------GTGCATT-------------------------------------------------CCTTTTG-----TGT--------------------------------------------------------------------------------------------------------------------------------GCCGTGCGGCA---------------------------TTTGTTGCTGTTGTTTTTTGTACTAAAGTCGCGCCGTTTGT---CT--T--------------------------------------------------------------------------------------------------------------------------------GTTCTCTTATTT------------------TT--------------------------------------------------------GCCAACACTA-------------------------------------------------------------------------------CA--------TA---------------------------------C----------GCACATAC---------------------------------TTTCACA----C--------------ACCCACACACACACACTCA--------CACG--C--AC------------------------AC------------GCACACGCAC--AT------------------AT--------ATA--A--------------ACGT--AC--AGAGGAGGAT-------------CTGAAGC--GTCTGCAACAGGAGACATCCGGTGGCAACTATAGC-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGC--GTCTGCAACAGGAGACATCCGGT.............2811.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAACAGGAGACATCCGGT.............2111.001000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCAACAGGAGACATCCGGTG............2411.001000000000000000000000000000000000000000000000000000000000000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATTT------------------TT--------------------------------------------------------GCCAACACTA-------------------------------------------------------------------------------C..................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAT-------------CTGAAGC--GTCTGCAA............................2211.001000000000000000000000000000000000000000000000000000000000000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-------------CTGAAGC--GTCTGCAACAGGA.......................2211.001000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGC--GTCTGCAACAGGA.......................2011.001000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTA-------------------------------------------------------------------------------CA--------TA---------------------------------C----------GCACATAC---------------------------------TTT...............................................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
...........TATTTATTCTACGATCTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
AAACT--------------------------------------------------------------------------------------------------------------------------TAATCTATGAATTTC-----------ATGCGTTTT----------TGAATCAGAGTATTCCGTTATCTCTGC-CCTAGTGGCTCGC-------------------------------GCTGT---------------------------TTGATATTCGCTGGTATTGT----TGTACTAAAGTCGCTACGTTT---GTCTTGT--------------------------------------------------------------------------------------------------------------------------------GTTTTCTTATTT------------------TT--------------------------------------------------------GCCAACACT--------------------------------------------------------------------------------CA--------TA---------------------------------T----------GCACATAT---------------------------------TGCCACACTGAC------AC--ACA--------------------------C----C--G--ACACAC------ACT--C--ACGCAACCGCAACCGCAATTC----------------AACTCGCAC----------------TCCATCATCGACATACACTCACCT--AC--AGAGGAGGAT-------------CTGAAGC--GCCTGCAGCAGGAGACGTCGGGCGGCAACTATAGC-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT--C--ACGCAACCGCAACCGCAATT............................................................................................................................................2411.001100000
droGri2
GTCAAA---AA-GCTTAT----------------------------------------------------------------------------------------------------------------TCTATGAA--------------TATTTCTGTAATTCATTTCT--------------------CACGTCTGGCTAAATAT--T-AATGTTTTTTGCTT-------------------------------------------------------------------------TGTACTAAAGTCTCG-CGTTT---GTGTTGT--------------------------------------------------------------------------------------------------------------------------------GTTTTCTTATTT------------------TT--------------------------------------------------------GCCAACACTC-------------------------------------------------------------------------------CA--------TA---------------------------------C----------TCG---------------------------------C--ACACTCACA----C----------TGACAT------------TCG------------CA--C--ACATAC------ACACAC--AC----------------------A--------CACAC------------------ACACACACA------------------TGT--AC--AGAGGAGGAT-------------CTGAAGC--GTCTGCAGCAAGAAACATCGGGCGGCAACTATAGT-SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAGGAT-------------CTGAAGC--G...................................1811.00110
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAACATCGGGCGGCAACTAT....2311.00110
droWil2
GTCGCG---CACTCT----------------------------CTCTCTCTATCTCTCTCGCTCACTCGCTCGTTCCCTTTCTCACTTTTTCTCTTTTTCTAATTTTG-----TGTGCATTTTGTCA---------------------------------------------------------------------------------------------------------------------------------------TAGATTTTTG----------------------------TATACTAAAGTCAATTTTTGT---CTCTTAT--------------------------------------------------------------------------------------------------------------------------------GTTCTCTTATTT------------------TT--------------------------------------------------------GCCCACAAACCACGATATCGAT--ATCATATTCGAAATCTTGTCACAAAAAAAAAAAAAAAACCCAAAACG---------------------------------A----------------AAA-------------AATTACA---------------------------------------------------------------CACA-------------------------------------------------------------------------------------------------------------------------------------------------CC--AGAGGAGGAT-------------CTCAAGC--GTTTGCAACAGGAGACATCTGGCGGAAGCTATTCC-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGAGACATCTGGCGGAA.........2111.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGGAGACATCTGGCGGAAGC.......2511.00100100
dp5
TGTGG-------------CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTTGTTGTTGTTG---------------------------------------TTGTAATTTCATTTAATAAATGTTTTCGCCT-------------------------------------------TTTC----TTGTTGTTGTTTTTGCTGCTG--------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTGGAAACATTTGCCGACGGCTGT--------CG-------------------------------------CTTCATTTCA---------------------------------C--ACACCCAAA----C----------ACAC------------GCGCACACACACAC----------ACACACACAC--A----C--AC----------------------AC------AC--AC------------------ACGCACACA------------------------T--GCCGGAAGTT-------------GAGCAGC--GCGTGAGGCAGAAGGCA-------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAACATTTGCCGACGGC....................................................................................................................................................................................................................................................................................................................................................2211.0010000000010
droPer2
ACTGTG---TG-------------GCCTTCGAT------------GC------------------------------------------------------------------------------------------------------------------------------------------------------GCTGCTGCTGCTGCTGTTTGTTGTTTGCCTTGGAT-------------------------------------------------------TGCAATTGT--------------------CGTTT---GTGTTGT--------------------------------------------------------------------------------------------------------------------------------TTTTGTTGTCGTTTGTCGCTTTTCCT-TCTTC--------------------------------------------------------C--ACTTCTT-------------------------------------------------------------------------------CA----CA--C-T-------------------------------------------ACGTT-----------------------------AAT----TTCCACA------CACACACA----------------------------CACACACA--C--ACAC--------A----C--AC----TC------------GCGC--------GC--GC--------------AC--ACACACATA----------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
ATGAA-------------CTGCTCTTTTTTGGTGCT------------TTTT-------------------------------------------------TTTTTGAGAGGGGGTATTTTTTGTTA--------AAAAGTTAAATTATGAAAATGTCAAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC----AATATACATGTGTCATATATG-----------------------------------------------------------------T----------------------------------------------GA---------------------------------GG--CACTCCCA----CACACACACATACACA----------------------C------------AC--ACAT-C--A----CACAT----AT-----------TACACACATACATAT------------------ATAAA--------------------------TGA----ATAA-----------------------------------------------------------------ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ATCAAG---AGTGAATA--------------------------------------------------------------------------------------------------------------AAACCCGCTAATCAC-----------TCACGCACA----------CTAGAAAGTGAA----------------------------------CTTTTCCGC---------------------GAACTG----------------------------------------------------------GT--AACTTGAC--------------------------------------------------------AATTTTTTACCA-------------------------------------------TTTA----TT--------------------------------------------------------------------------------------------------------------------------------------------------GTAAAAAAAAAAGCTGCATTGCGAAGG---------------------------------A----------------AAA-------------ACTTTTTCGCA---------------------------------C--TTACTCCAA----C----------TCAC------------ACACACA----------CA--CACAAACAT------ATAT--------------------------------GTATAT------------------ATATATATATATA-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ATTTG-------------CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGGTT--------------------------------------------------------------------------------------------------------------------------------TTGTTTGAACTG------------------GGGGCTTTTTTTGTGGTTCTGTGGTTCGA-----------------------------GGAAATAAG-----------------------------------------------------------------------------------------------A----------------AAA-------------ACGATTTTTCA---------------------------------CACACACACACA----C----------ACACAC------------ACA------------CA--C--ACACAC------ACACAC--AC------------------------------ACACAC------------------ACACACACA-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GTCACG---CATATTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTTGTATGTGATCCCCACTTTTGTTCGCTGCGAAACTTGCTGCAGCATTTCGCTGGCAGACAATGGCTTGAACTTT----TGCACCCAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTT------------------TT--------------------------------------------------------GCCGACAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACACTCTCA----C------------TCTC----------ACACACA----------AA--C--AC--ACA--CACA----C--AC----AC------------A------------C--TC----AT--------AC--ACATAGATA--A--------------ACCGCCAT--AGGGAAGGCA-------------GTGACTTTTGTCTGCAGCTGA--TCCTTCGGCGGCAA---TTGT-SizeHit CountTotal NormTotal
No Reads
droEle1
GTTAAGGGGAGTCCCCATTCTCCAATCTCCAAT------------CTCCATT---------------------------------------------------------------------------------------------------------------------TCC--------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------------------------------------------------------------------------------------------ATTCCCTCATTC------------------TAGT--GTTTGT------------TTGGACAAAGCCAGAGGAGCTGGCATATTTCTTGGCCCACACA--------------------------------------------------------------------------------CA--------CA---------------------------------C----------ACACACACACACACATGTCTAGAACAGAATGGCCAACACACACACAC----------------ACACA----------------------CACACACA--C--ACAC------------------------------------ACACACACACACAC------------------ACACA--------------------------CAC----ACAG-----------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droRho1
TCCTT--------------------------------------------------------------------------------------------------------------------------TTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGTGGCACGGGGT----------------------------CCAAATGTAT---------------------TTTGCATCATTTGTCTTAGCCAGGCCAA------------------------------------------------------------GGATCTCTTTCCCTATCTTT--------------------------------------------------------A--ACTCCCA-------------------------------------------------------------------------------CA--------------------------------------------------------------------------------------------CACACACACA----C----------ACAC------------ACACACACA--CAC----A------CACACACAC--A----C--AC------------------ACACACACA--------C------------------ACACACACA------------------GAT----ACAG-----------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droBia1
GTGTT--------------------------------------------------------------------------------------------------------------------------TTTGTTGTTG-----------------------------------------------------------------------------------------------------------GGCGCG------------------------------------------------------------------------------------------------------TGAAACTCGTCGTACGCTGTTTTTTTAATGCTCTTCTCCG-------------------------------------------TTTC----TCTTCT----------TCTT------TT------------------TT--------------------------------------------------------GCATACACTT-------------------------------------------------------------------------------T-------------------------------------------------------GCG-----------------------------------CACACACAC------------ACGCACACAC------------TGA------------CA--G--AGACAC------ACTCGC--AC------------------------------ACACAG------------------GCACAGACA-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TGTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGTCGCACCATTCGATGTGTTCT--------------------------------------------------------------------------------------------------------------------------------CTGCTCTTATTT------------------TGGCCCGATTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT--------CCT--GC--AGAGGAGGAC-------------CTCAAGC--GGCTGCAGCAGGAGACCTCCGGCGGCAACTACAGC-SizeHit CountTotal NormTotal
No Reads
droEug1
ATATC--------------------------------------------------------------------------------------------------------------------------TTTTTTATGAAATTTAAAACGTAAGCATACTTCTA----------GCAACCACTGTGTCGCATTTTCTGTTCGGTTAGAGACGTCAGTTGTTTTTCCCGC---------------------TGCCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----TTGTTGCTGCTTTTGTTGTTGTTTATGT------------------TG--------------------------------------------------------CTCA-CGGTT-------------------------------------------------------------------------------TT--------TG---------------------------------T----------GCA---------------------------------C--ACACTCAAA----C----------ACAC------------ACACGCA----------CACCG--ACACAC------ACAC--------------------------------ACACAC------------------ATATACACCCACA-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
ATTCG--------------------------------------------------------------------------------------------------------------------------GTTTTTGTGCAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATCTTTGCCAGAGCGGTGTTATATTTGTGTTCTATTTGCCGCTGCCTGCT--------------------------------------------------------------------------------------------------------------------------------------------------GCATAAGCAAA--------------------------------------------C-AGGGTGAGTCAAGTCGCGTGAAATCGCATATAGTGCACGA----TCA---------------------------------C--ACACACACA----C----------ACACAC------------ACA------------CA--C--ACACAC------ACGCAC--GC------------------------------ACACAA------------------GCGCACACA----------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCAAA--------------------------------------------C-AGGGTGAGTCAAGTCGCG.....................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTCAAGTCGCGTGAAATCG.............................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TTTGCCAGAGCGGTGTTATATTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TTTGCCAGAGCGGTGTTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCGTGAAATCGCATATAGTGCACG................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................TGTGCAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATCTTTGCCAGAGCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTCAAGTCGCGTGAAATCGCA...........................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAA--------------------------------------------C-AGGGTGAGTCAAGTCGCG.....................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------------------------------------C-AGGGTGAGTCAAGTCGCGTGAAATC..............................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGCCAGAGCGGTGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
ATTCG--------------------------------------------------------------------------------------------------------------------------GTTTTTGTGCAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACA----C----------ACACAC------------ACA------------CA--C--ACACAC------ACGC....................................................................................................................................................................29200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--C--ACACAC------ACGCAC--GC------------------------------ACAC............................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------CA--C--ACACAC------ACGCAC--GC------------------------------ACA.............................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
droSim2
CC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCACCA-------------------------------------------------------------------------------CA------------------------------------------------------------------------------------------C--ACACGCAAA----C----------ACAC------------ACACACGCAAACAC----------ACACACACTC--A----TACGC----A----------TTTA----------------CACACACAC----------------ATCCATA-CGAAA--------CAC--AC--ACAGATAGACTGCACGCTAACAGCGGCTGC--GGCTGGCGCTGTTAACGTCCGCTGTTAACTCGAAG-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------CAC--AC--ACAGATAGACTG........................................................1816.00651000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGTCCGCTGTTAACT......1814.00400400000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATAGACTGCACGCTAACAGC............................................2313.00300300000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGACTGCACGCTAACAGC............................................2112.00200200000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--ACAGATAGACTGCACGCTAACAGCGGC.........................................2811.00100000000010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTGTTAACGTCCGCTGTTAACTC.....2611.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACAC----------------ATCCATA-CGAAA--------CAC--AC--ACAG................................................................2811.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGTCCGCTGTTAACC......1811.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CGAAA--------CAC--AC--ACAGATAGACTGCA......................................................2511.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACTC--A----TACGC----A----------TTTA----------------CACA.......................................................................................................................2211.00100000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCACGCTAACAGCGGCTGC--GGC.................................2411.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGACTGCACGCTAACAGCGGCTGC--GGCT................................2911.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCTGC--GGCTGGCGCT..........................1811.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGTCCGCTGTTAACG......1811.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATAGACTGCACGCT..................................................1811.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CGAAA--------CAC--AC--ACAGATAGAC..........................................................2111.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCTGTTAACGTCC................1611.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGACTGCACGCTAACAGCG...........................................2111.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGC----A----------TTTA----------------CACACACAC----------------A.................................................................................................2011.00100000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CGAAA--------CAC--AC--ACAGATAGACTGC.......................................................2411.00100000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC--AC--ACAGATAGACTGC.......................................................1811.00110000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------CAC--AC--ACAGATAGACTGCA......................................................2011.00100000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------------------------------------------------------------------------------CA------------------------------------------------------------------------------------------C--ACACGCAAA----C----------ACAC------------ACACAC......................................................................................................................................................................................................2531.00300003000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGCTGTTAACGTCCGCTGTTAACTC.....2811.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------CAC--AC--ACAGATAGACTGCACGCTAAC...............................................2711.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC------------ACACACGCAAACAC----------ACACACAC............................................................................................................................................................................2531.00300003000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTGTTAACGTCC................1511.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATA-CGAAA--------CAC--AC--ACA.................................................................1911.00100000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AC--ACAGATAGACTGCAC.....................................................1811.00110000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC--GGCTGGCGCTGTTAACGTCCGCT.............2611.00100000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGTCCGCTGTTAACTCGAAG-2311.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATAGACTGCACGCTAACAGCGGCTGC--....................................2811.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATA-CGAAA--------CAC--AC--ACAGATAGAC..........................................................2511.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--GGCTGGCGCTGTTAACGT..................1911.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGACTGCACGCTAAC...............................................1811.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGTCCGCTGTTAACTCGAA..2211.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--------CAC--AC--ACAGATAGACTGCA......................................................2211.00100000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATA-CGAAA--------CAC--AC--ACAG................................................................2011.00100001000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGTTAACGTCCGCTGTTAA........2211.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATAGACTGCACGCTAACA..............................................2111.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--ACAGATAGACTGCACGCTAACA..............................................2311.00100100000000000000
droSec2
TGCATG--------------GCGCAGTGCAGGGGTTGTGATCGTTTTAGGGGGTGAATGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATTTTT---CA--T----------------------------------------------------------------------------------------------------------------------------------------AATC------------------TC--------------------------------------------------------GTAAGCACT------------------------------------------------------------------------------------------C----------------------------------------------CA---------------------------------CGCACACTCACA----C----------ACAC------------ACACACA----------CA--C--AC--AC------ACACAC--AC----AC------------A------------C--AC----AC------------ACACACAAAAGG--------------ACGA--AAAGGA-----------------------------------------------------------------GSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AC--AC------ACACAC--AC----AC------------A------------C--AC----......................................................................................................................19200.0511000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AC------ACACAC--AC----AC------------A------------C--AC----AC------------........................................................................................................19200.0511000
droYak3
TTTTT-------------TTTGCTGTTTTCATC------------TTGTTTT-------------------------------------------------TTGTTTGTGTTTGGCAC--------------------------------------------------------------------------------------------------------------------------------TTT---------------------------TTGG---------CATTCGTTTTTTATTCTTGTTGCACGCTGTTCGG---TT--C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCATCA-------------------------------------------------------------------------------CATTCACACAC---------------------------------------------TTA---------------------------------C----------A----C----------ACAC------------TTACTCATT--CAC----------TCACACACAC--A----TACAC----------------------AC------GC--ACACTCTCACGCGCGTAA----------------------------------------------------------------------------AGAAATATAC--------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAC--A----TACAC----------------------AC------GC--ACA.........................................................................................................................19180.06100000010000
droEre2
TCGTCG---CCATCG----------------------------TCTCATTTATTGCTTGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTTGG---CA--CGTTCCCTTGTGGTTTGCAGCGTGAAA------------------------------------------------------------------------------------------------------------TAAGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCAA----CACACACACACACACA----------------------CACACAGG--C--AC------------------------CC------------GCACACACAC--AC------------------------AGATACA------------------GAT--ACAGCG-----------------------------------------------------------------GSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 04:19 AM