ID:

dvi_19439

 Coordinate:

scaffold_13049:10969732-10969920 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-0.8 -0.8 -0.74

Flybase annnotation

CDS [Dvir\GJ13379-cds]; exon [dvir_GLEANR_13274:2]; exon [dvir_GLEANR_13274:3]; CDS [Dvir\GJ13379-cds]; intron [Dvir\GJ13379-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCGGAGGAAGTAGCTGACCCAGTGCCACGGCAGCCAGCGCAGCCGGAACAGTCTGTGCAGCCAGAGCAGCCAGAAGAGCCAGAACAGCCCAACAAAAACAACAATAACAACATAAACAACACCACCAACAGCAACAACACCAGAAACGAGGACAACAACAACAACCAAAACAACAACAACAACGAGCCCACAAACGTCAACTGCAGCTGCTTGGAGTCCCAAGCAAATACAAACTGTAGCATGGTCTTGCCTTTCAATCTTGGCCCCGATGGCCACAACGTGGATGCCA
******************************************************************************************************************************************..(((.......(((..........................................)))........)))...***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR1106730
embryo_16-30h
 M027
male body		 SRR060670
9_testes_total
 SRR060679
140x9_testes_total
 V047
embryo
 SRR060671
9x160_males_carcasses_total
 SRR060655
9x160_testes_total
 SRR060665
9_females_carcasses_total
 GSM1528803
follicle cells		 SRR1106718
embryo_6-8h
 SRR1106720
embryo_8-10h
 SRR060668
160x9_males_carcasses_total
 V116
male body		 SRR060672
9x160_females_carcasses_total
 SRR060687
9_0-2h_embryos_total
 SRR1106729
mixed whole adult body
.........................................................................................................................................................................................GCCCACAAACGTCAACTGCAGCTGCTT............................................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TGCCACGGCAACCAGCGCA........................................................................................................................................................................................................................................................ 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ACCAGAAACGAGGACAACAA................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CAGAAGAGCCAGAACAGC......................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................GCAACCAGAAGAGCCACAACAGCC........................................................................................................................................................................................................ 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GAAACTGTAGCATGGTCTTGCCTTTCAATCTTGGCCCC...................... 38 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...GAGGAAGTAGCTGACCCAGTGCCACGGC.................................................................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................GAAGGGCCAGAAAAGCCAAACAA.................................................................................................................................................................................................. 23 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................ACAGCCCATCGAGAACAACAAT........................................................................................................................................................................................ 22 3 5 0.40 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGCTTGGACTCCCAA................................................................... 15 1 6 0.33 2 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0
............................................................................................................................................................................................CACAAACGGCAACTGCACCTG................................................................................ 21 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CAAATACACACTGTAG.................................................. 16 1 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................AGAAACGAGGACAAGTAC.................................................................................................................................. 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................CCACAAACGGCTACTGCACCT................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....AGGACGTCGCTGCCCCAGT.......................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................CACAAACGGCAACTGCACCT................................................................................. 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................CCACAAACGGCAACTGCACC.................................................................................. 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................CCACAAACGGCAACTGCACCT................................................................................. 21 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCTGCTGGGACTCCCAA................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GGCCTCCTTCATCGACTGGGTCACGGTGCCGTCGGTCGCGTCGGCCTTGTCAGACACGTCGGTCTCGTCGGTCTTCTCGGTCTTGTCGGGTTGTTTTTGTTGTTATTGTTGTATTTGTTGTGGTGGTTGTCGTTGTTGTGGTCTTTGCTCCTGTTGTTGTTGTTGGTTTTGTTGTTGTTGTTGCTCGGGTGTTTGCAGTTGACGTCGACGAACCTCAGGGTTCGTTTATGTTTGACATCGTACCAGAACGGAAAGTTAGAACCGGGGCTACCGGTGTTGCACCTACGGT
*****************************************************************************..(((.......(((..........................................)))........)))...****************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060656
9x160_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR1106724
embryo_12-14h
 V116
male body		 SRR060675
140x9_ovaries_total
 SRR060673
9_ovaries_total
 V053
head
 SRR060683
160_testes_total
 V047
embryo
 SRR060676
9xArg_ovaries_total
 M028
head
 M061
embryo
 SRR060654
160x9_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060658
140_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060689
160x9_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060670
9_testes_total
 SRR060674
9x140_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
.............................................................................................................................GTTGTCGTTGTTGTGGTC.................................................................................................................................................. 18 0 17 1.59 27 0 12 0 0 0 1 5 0 0 0 3 0 0 2 2 0 0 0 0 1 1 0 0 0
...............................................................................................................................................TTTGCCCCTGTTGTTGTTGT.............................................................................................................................. 20 1 4 0.75 3 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................AACAGGGGCTATCGTTGTTGC......... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AACCTCAGGGTTCGT................................................................ 15 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TGTTGTTATTGTTGTATTT............................................................................................................................................................................. 19 0 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TGCCCCTGTTGTTGTTGTT............................................................................................................................. 19 1 20 0.20 4 3 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CTGGCTCACGGTGCGGTCT............................................................................................................................................................................................................................................................... 19 3 12 0.17 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GCCCCTGTTGTTGTTGTT............................................................................................................................. 18 1 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CTTTGCCCCTATTGTTGTT................................................................................................................................ 19 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................CCGTCGGTCGCTTCGGCCGT................................................................................................................................................................................................................................................. 20 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GAGTTTGCAGGTGCCGTCGA................................................................................. 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................TCGGTCGCGGCGGCCTTGA............................................................................................................................................................................................................................................... 19 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TTTGCCCCTGTTGTTGTTGTTC............................................................................................................................ 22 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCTTCTCTGTTTTGTAGGGT...................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TGCAGTTGAAGTCGCCGA.............................................................................. 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................TTTTTTGTGGTGGCTGCCGTT........................................................................................................................................................... 21 3 20 0.10 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................GCCCCTGTTGTTGTTGTTCG........................................................................................................................... 20 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TTGCCCCTGTTGTTGTTGTT............................................................................................................................. 20 1 20 0.10 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................ATCCTCAGGGTTGGTATAT............................................................ 19 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................TTTCAGAACGGAAAGTTA............................... 18 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................GTTCTTGCTCGGGTATTTG.............................................................................................. 19 2 18 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................AGACCCGGGGCTACCGAG.............. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................GTTGTTGTTGTTGGTTTT....................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................CTGTTGTTGAAGTAGGTTTTG...................................................................................................................... 21 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................CAGGGGCTATCGTTGTTGC......... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................GTATTTGGTGTGCTGGTTA................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:10969682-10969970 + dvi_19439 CCGGA------------------GGAAGTAGCTGACC----------------------------------------CAGTGCC---A------------------------------------------------------------------------------------------------------CGGC-------------AGC-----------------------CAG--------------------------------------------------------CGCAGCCGGAACAGTCT------------------------------------------------GTGCAGCCAGAGCAGCCAGAAGAGCCA------------------------------------------------------------GA----------------------AC------AGCC------------------------------------------------------------------------------CAACAAAAACAACAATAACAACATAA------ACAACACCACCAACA---------------GCAACAACACCAGAAACGAGGACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------CAACAA---------------------CAACC------------------------------AAAACAA----CA---ACAA---------------------------------CAACGAG----CCCACAAACGTCAACTGC---------AGC------TGCTTGGAGTCCCAAGCAAATACAAACTGTAGCATGGTCTTG-----------C--CTTTCAATC-------TT----GGCCCCGATGGCCACAACGTGG-----------------------------------------------------------------------------------------------ATGCCA
droMoj3 scaffold_6680:9853704-9854007 - CCGTA------------------CGAAGCAGCTGAGC----------------------------------------CGG------------------CAGAGCAGCAGC-------------------------------------------------------------------------------------------------AGCAGCA---------------------------------------------------GCAGCAGCCAGAGCG----------------GACAGAGCAGTCACAACAAAGCGAGCACGCCGAGCAGCCGAAACAGCCAGAGACAAATCCAGAGCAGTCAGCACAGCAAGAAAACGTA------------------------------------------------------------GA----------------------GC------TCTCCAACAACAACAAC---------------------------------------------------------A---------------------A------CAA------------------------------------------------CAACACTAGTAACAATAACAACAACA---------------------------------------------ATA---------------------------GCAACAG--------------------------TAAC---AACGAGTGCAGTAAAG-------------------------------------------------------------------------------------------TC----------------------------------------------------------------------------------------GAGAACGAAGCAAAATCAAGCTGCAGCATGGTCTTG-----------C--CTGTCGGCC-------TT----GGCCCCGACGGCTACAACGCCG-----------------------------------------------------------------------------------------------ACGCCA
droGri2 scaffold_4786:677-919 + ACGGC------------------AGCAC---------------------------------------------------------------CA----------------------------------------------------------------------------------------------------------------------AC-----------AGCAGCAG----CAGCAGCAGCAGCAGCA------GCA---GC----------------------------------------GTCAA---------------------------------------------------------------------------------------------------------------------------CATCAGCAGCAGCAG-----CAGCAGCAGTTAA-AA------------------------------CA---------ACAGCAGCAT---CA---------------------------------------------------GCAGCA------GCAA------------AA------------------------------------------------------ACAGCAGCAGCAACAGCAGCA------GCAGCTAAAACAGCA------AC------------------AGC-----------------------------ATCAGC---A------------GCAGCAG---------CAT---CAGCAGCAGCAGCAGCAGCAGCAGCT------------------------------AAAACAA----CA---ACAA---------------------------------CAGCAGG----------------ACCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------AGCAAACTTCGCCA----------------------------------------CGGCTTCAATGTGG
droWil2 scf2_1100000008330:202-451 - CTGGC------------------GATGGCAATGCTG----------------------------------------CAAC---A---ACAACAG----------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAATTGCAGCATCAGCAACAGCA-------------ACAGCAGCAACGAATGCAACAG---------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAA-----CAGC-------------------------------------AGCAACAATTGCAGCAACAG---------------------------------------------------------------CAGCA------ACAA------------TT------------------------------------------------------GCAGCAACAGCAACAGCAACA------GCAGCAACAATTGCA------AC------------------AAC-----------------------------AGCAGC---A------------ACAACTG---------CAG---CAACAGCA---------------ACAG------------------------CA----------------ACAGCAGCAACAAATGCAACTGCAAC-------------------------------------------------------------------------------------------------------------------------------------------AACAACAGCAGCCACAATGGCA-----------------------------------------------------------------------------------------GC-----AAC--
dp5 XR_group8:5334597-5334796 - GGAGG------------------A--------------------------------------------------------------TACCGCATCCGAA-----------CAGG----------------AACCACAGCCGGTCGACAG--------CAACAACAACGATCCACAGATACCACAAGTGGGCGACAGC---------A-----------------------------------------------------------------------------------------GTGA------G---------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------CAACAACAACAACAAAAACAAAAACA---------------------------------------------AAA---------------------------CCAACAG--------------------------CAAC-------------------------------------------------------------------------------------------------------------------------------------------------------GA-------CGCAACAGAGAAG-----------------------------------------TACAAA-------ATGGTACTG-----------C--CGTTCGGTC-------TC----GGCCCCGACGGGCACCACGTGG-----------------------------------------------------------------------------------------------ACGCCA
droPer2 scaffold_38:358092-358291 + GGAGG------------------A--------------------------------------------------------------TACCGCATCCGAA-----------CAGG----------------AACCACAGCCGGTCGACAG--------CAACAACAACGATCCACAGATACCACAAGTGGGCGACAGC---------A-----------------------------------------------------------------------------------------GTGA------G---------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------CAACAACAACAACAAAAACAAAAACA---------------------------------------------AAA---------------------------CCAACAG--------------------------CAAC-------------------------------------------------------------------------------------------------------------------------------------------------------GA-------CGCAACAGAGAAG-----------------------------------------TACAAA-------ATGGTACTG-----------C--CGTTCGGTC-------TC----GGCCCCGACGGGCACCACGTGG-----------------------------------------------------------------------------------------------ACGCCA
droAna3 scaffold_13340:17495046-17495262 + GAAGC------------------A---------------------------------------------------------------GCAGCA------------------------------------------------------------------------------------------------------------------------------------------C---A--------------------------------------------------------C------------------------------------------------------------------------------------TCAGCAACAGCAGCAATATCAGGAGCAATATCAGCAGCAGCAATATCAGTTGGAATTGGAA------AA------------------------------------------------------------------------------GCAG---CAACAGCAAAAGCAGAAACAC---CCC---------------------T---ATCAGCAACAA------------CTCGAA---------------------------------AA------------------------------------------------------GCA------AC------------------AAC-----AGCAGCAGCATTTGATGGAGCAACAGCAACTAC---------------AACAT------CAGCAACAG------TA---------------TTTG------------------------CAACAG----------CAACACCAA------------------------------------CAG----------------CAACTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAT
droBip1 scf7180000396696:780091-780362 + CCGCC------------------ACGAGGAGCTGTGC----------------------------------------GAGCAGT---A------------------------------------------------------------------------------------------------------CAAG-------------CG---------------------------GGAGAACACCTGGAGCACGCTGGCCAGTG-------------CGGGCATGAACCGGCGCAAC--------------------CAGCAGAACCAGCAGCCGGA---------------------------------------TCAGCCACACCAGCCCAATCAGATCCCA------------------------------------------------------------------------CACCAGCAA---------------------------------------------------------------------------------------------CAGCA------ACAACAACAGCAGCAGCAACAACAACAGCAG------------------CAG---CA-----------------------------------------------------------------------------------------------------------------------ACAAC---------------AACAACAGCAGCAGCAGCAG---------------------CAACC------------------------------ACAACAA----CA---ACAG---------------------------------CAA-----------------------------------------------------------GCGGATGCTGGTGGCAACATACCTTCG-----------C--TCCTG--------------------------------GACATGG-----------------------------------------------------------------------------------------------TCATAA
droKik1 scf7180000302656:7269-7468 + CCGGA------------------GAAACCAGTAACCCCAGCTCCGGACAGTCCTTGTCAGCCTGATGAAGACACTAC------AACAACGACAACCACCTGTTCAACAAC-------------------------------------------------------------------------------------------------AACTACA---------------------------------------------------AC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGACTACAACAACAACTACAACAA------------C---------------A---------------------------ACAACG------ACTA------------CAACAACAACAACTA---CAACAA---------CGA---CT------------------------------------------------------------------------------------AC-----------------------------AACAACAAC---------------GACTA------CAACAACAA------CG---------------ACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACCAC-------------------------------------------------------------------------------------------------------TAC--
droFic1 scf7180000453833:618420-618675 - CCATC------------------GCC-C------------------------------------------------CAGC---A---GCAGCA------------------------------------------------------------------------------------------------------------------------------------------G----CATCAACAGCAGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------GAGCATGCATCACCATCAGCAGCAGCAACAACATATGCAACAGCAG------CA------------------------------------------------------------------------------GCAA---CAACACCAGCAACAGCAACAA---------------------------C---ATCAGCAACAG------------CAACAA---------------------------------CATCAACAACA---------------------------------------------GCA---------------------------GCAGCAG--------------------------CATC---AGCAACAGCAGCAACATCAA---------CAACAG---------------------CAGCA---------------ACAT----------------------CAACAGCAG------------------------------------CA-------------------GCAGC---------AAC------AACA--------------------------------TCCCAG----------CA--TTGGCATGT-------TT----GATGCCAACGAGGTCAAC---G-----------------------------------------------------------------------------------------------ATGTCA
droEle1 scf7180000491023:1064456-1064685 - GACGC------------------A---------------------------------------------------------------GCT--------------------------------------------------G-------ACCTTTATGACG------------------------------CGCC-------------AGCCGGAGCAGCCGCCGACCAAAAGGACG--------------------------------------------------------CGCACGAG---------------------------------------------------------------------------------------------------------------------------------------------CTAGGAATTAAGCTGGGGAGCACAACA-TTTGCCACCATTAACAACAACAAT---AACGACCACAACAACAACAACAACAG---------C------------------AACA------------------------------------------------------------------GCA------------------------------------------------------------------------------------------------------------ACAGCAG--------------------------TTGC---AGCAGCCACA---ATAACAA---------C------------C---------------ACACCGACAACACCA---CCATTAAGCACAACAG----------CA------------------------------------------------------------------------------------------------------GCAACAACAAGC------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------ACAGCA
droRho1 scf7180000766547:686-944 + GCAAC------------------A---------------------------------------------------------------GCAGCAACAACCAAAACAGCAGC-------------------------------------------------------------------------------------------------AACAACA---------------------------------------------------GC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAACGGCAGCAACAGCAGCAA------------C------------------------------A------------ACAGCA------GCAA------CAACAGCAGCAACAACAGCAG------------------CAG---CA------------------------------------------------------------------------------------AC-----------------------------AGCAACAAT---------------ACCAG------CAGCAACAC------CA---------------ACCA------------------------AAACAG----------CA---GCAA---------------------------------CAACAGGCC-----ACAAA--TCAACCGCAACAACAGGAACAAGACTTTTT--------------------------------GTTTATGAAAACGGAGCGGGTCAACAACCTCAAATATTGGCCGGGTTCAATGGCGTCAATGTGC-----------------------------------------------------------------------------------------------AACCTG
droBia1 scf7180000302126:3414146-3414411 - TGC--------------------------------------------------------------------------------AACGGCAGCAACAACC-----------AAGC----------------GGCGACAGGCGGTAAACAG--------CAGCAGCAGCAGC------------------GGCAGCAGC---------G-----------------------------------------------------------------------------------------GCGG------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAACAACAA------------C------------------------------AACAACAATAGCAACAGCG------GCAG------------GC------------------------------------------------------ACAGCAACAGCAACAGCAACAAGCGCTGCAGTCGCAGTCGCA------GC------------------AGC-----------------------------AGCTGC---A------------GTAGCAG---------CAG---CAGCAGCA---------------GCAG------------------------CA----------------GCAGCAGCAACGCTAGCGTCGGCAGCGACGCCAGCAGCATGTCCAAG---ACCAGCAGCGG------------------------------------TAT--------------------------------------------TC--------------------------------CAAATGCAG-----------------------------------------------------------------------------------------------CAGCAA
droTak1 scf7180000415376:50372-50635 - GCTCAGCCTGAGCGCTGCGCAGGAGTAC------------------------------------------------------------CAGCA---------------------------------------------------------------------------------------------------------------GC-ACCAAC-----------AGCATCAG--------------------------------------------------------------CAGCAT---------------------------------------------------------------------------------------------------------------------------------------------CAACAACAC---------------------------------------------CAGC---------------------AGCAGCAA---C------------------ATCACCAACAGCAGCAGCAGCAGCACCA------------ACAG------------CATCAACATCAGCAA------------------CA------------------------------------------------------------CCA---------------------------AC-----------------------------AGCATCAGCA------------ACATCAG---------CAACAC---------------------------CA---------GCA---------------GC-----ATCA--ACATCAG---------------------------------CAGCAGGGCG-------------------------------------------GCGGTGG--------------------------------------------TC--------------------------------CC------------------------------GGCTCCCAGCAGCAAATGGTGCCGGTCAGCGTGGCCGCTGCCCTGCAGGTGGCTGCGGCCAATGCGGC-----TGC--
droEug1 scf7180000409061:49464-49649 - CCGGC------------------GGCA-----------------------------------------------------------TACAC------------------------------------------------------------------CAGCAGCATCAGC------------------AACAGCAGCACCAGCAGC-AACAAC-----------A----------------------------------------GC----------------------------------------AACAA---------------------------------------------------------------------------------------------------------------------------CATCAGCAACAACAG---------------------------------------------CATC---------------------AG---------------------CAGCAACAACACCACCA---------G---------CAGCA------GCAACACCACCAACAGCAGCAACACCACCAA------------------CA--------------------------------------------------------------------------------------------------------------------------GCAAC---A------------ACATCTACAACAGCAGCAGCAG-------------------------------------------------------------------CAACACCAG------------------------------------CAG----------------CAGCAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC--
dm3 chr3R:13838971-13839230 + AGC--------------------------------------------------------------------------------AGCAGCAGCAGCACCACC---------ACACAGCAGCGCAGCACTACCACCACAGCCACCAGACAGCGCACCACCAGC------------------------------AG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA------------------------------------------GCAACAGCAGCACCACCAGCAGCAACAACAGCAA---------------------------------------------------------------------CAG------------CA------------GCA------------------G---CAACAGCAACAGCAGGCAC------------AGCAGCA------GCACCT------GAGCCACCACCACCACCACCATCATCACCATC-----AGCAGCAGTTCTTGATGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGACAGC---------AA---------------------------------------CCTGACCTTA-----------T--GCGA---CA-------AC----GACGACGACGACTACGACGCCG-----------------------------------------------------------------------------------------------CCGCAC
droSim2 3r:15759555-15759758 - CGCTG------------------G---C---------------------------------------------------------------------------------------------------------------------------------CAGC------------------------------GGC-------------GGCGGC-----------AGCAGCAG--------------------------------------------------------------TAGCAG---------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAG---------------------------------------------CAGC---------------------AGCAGCGACAGC------------------AGCAGCAGCAACATAAGCAACATCAGCAACATAA------GCAACATCAGCAACA---------------TCAGCAACA--------------------------------------------------------------------------------------------------------------------------------------TAAG---CA------------ACATCGG---------CAA---CAT------------------------CA---------GCA---------------AC-----AGCA--ATCATAG---------------------------------CAAC----------------------------------------------------------------------------------------------------------------------------------------------GCTGCATACTCATTAGCCGTTCATAGCTATCAAAAGCAAA--------------------------------------------------------TAGAAA
droSec2 scaffold_21:363278-363520 - AGC--------------------------------------------------------------------------------AGCTGCCGCAGTATGCGAAG--------------------------------CAGGTG-------GCTCATATGCAGC------------------------------AGC-------------AGCAGCAGC--------AGCAGCA-----------------------------------------------------------------GCAG------CAGCAACAGGACCAACGCACC-------------------------------------------------------------AGC----------------------------------------------------------------CTGCATCCGCAAA-TCCATCACCACCACCAACAGCAGC---------------------------------------------------------A------------------A---------CAG------------------------------------------------CAGCAGCAGCAACAGCAGCAGCAACA---------------------------------------------GAA---------------------------ACAGCAG--------------------------CAAC---ATCATATGCA---GCAGCAG---------C------------A---------------GCAGCA----------------------------------------GCAGCAA------------------------------------------------------------------------------------------------------CAACCTTTGTCACCACCTCA-----------C--CCA----------------------CCCGGCAGC---------A-----------------------------------------------------------------------------------------------GCAACA
droYak3 3L:14107798-14108033 - GCAGC------------------GA--------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------CTCAGA-----------AGCAGCAGGCCA--------------------------------------------------------CGCAGCAG---------------------------------------------------------------------------------------------------------------------------------------------CAACAAATT---------------------------------------------CAGC---------------------AGCAGCAATTGC------------------AGCACCAACAACAGATGCAACAACAACAACAGCA------GCAG------------CAACAACAACA---A---------------CAGCAG---CA--------------------------------------------------------------------------------------------------------------------GCAA---CA------------ACAACAG---------CAG---CAG------------------------CA---------GCA---------------AC-----AACA--ACAGCAG---------------------------------CAGCAGATCATCCAGCAACAGGCAACTGC---------TAC------TTCT--------------------------------GCCCTT-----------T--CTGACATCC-------TT----GGCTTTGGCGAGGACAGCGTGG-----------------------------------------------------------------------------------------------CTGCCA
droEre2 scaffold_4784:14011289-14011527 - GCAGC------------------GA--------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------CACAGA-----------AGCAGCAGGCCA--------------------------------------------------------CGCAGCAG---------------------------------------------------------------------------------------------------------------------------------------------CAACAAATT---------------------------------------------CAGC---------------------AGCAGCAATTGC------------------AGCACCAACAACAGATGCAACAACAGCAGCAGCA------ACAACAACAGCAGCA---------------GCAACAACAG---------CAG---CA------------------------------------------------------------------------------------GC-----------------------------AGCAACAAC---------------AACAG------CAGCAACAA------CA---------------G-------------------------------------------CA---GCAT---------------------------------CAGCAGATCATCCAACAACAGGCAACTGC---------TAC------TTCT--------------------------------GCCCTT-----------T--CTGACATCC-------TT----GGCTTTGGCGAGGACAGCGTGG-----------------------------------------------------------------------------------------------CTGCCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CCGGA------------------GGAAGTAGCTGACC----------------------------------------CAGTGCC---A------------------------------------------------------------------------------------------------------CGGC-------------AGC-----------------------CAG--------------------------------------------------------CGCAGCCGGAACAGTCT------------------------------------------------GTGCAGCCAGAGCAGCCAGAAGAGCCA------------------------------------------------------------GA----------------------AC------AGCC------------------------------------------------------------------------------CAACAAAAACAACAATAACAACATAA------ACAACACCACCAACA---------------GCAACAACACCAGAAACGAGGACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------CAACAA---------------------CAACC------------------------------AAAACAA----CA---ACAA---------------------------------CAACGAG----CCCACAAACGTCAACTGC---------AGC------TGCTTGGAGTCCCAAGCAAATACAAACTGTAGCATGGTCTTG-----------C--CTTTCAATC-------TT----GGCCCCGATGGCCACAACGTGG-----------------------------------------------------------------------------------------------ATGCCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----CCCACAAACGTCAACTGC---------AGC------TGCTT....................................................................................................................................................................................................2712.002002000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGAAACGAGGACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------CAA........................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CAGAAGAGCCA------------------------------------------------------------GA----------------------AC------AGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000010000
...GA------------------GGAAGTAGCTGACC----------------------------------------CAGTGCC---A------------------------------------------------------------------------------------------------------CGGC-------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000000000000000000000000000000000000000000000000000000000000
droMoj3
CCGTA------------------CGAAGCAGCTGAGC----------------------------------------CGG------------------CAGAGCAGCAGC-------------------------------------------------------------------------------------------------AGCAGCA---------------------------------------------------GCAGCAGCCAGAGCG----------------GACAGAGCAGTCACAACAAAGCGAGCACGCCGAGCAGCCGAAACAGCCAGAGACAAATCCAGAGCAGTCAGCACAGCAAGAAAACGTA------------------------------------------------------------GA----------------------GC------TCTCCAACAACAACAAC---------------------------------------------------------A---------------------A------CAA------------------------------------------------CAACACTAGTAACAATAACAACAACA---------------------------------------------ATA---------------------------GCAACAG--------------------------TAAC---AACGAGTGCAGTAAAG-------------------------------------------------------------------------------------------TC----------------------------------------------------------------------------------------GAGAACGAAGCAAAATCAAGCTGCAGCATGGTCTTG-----------C--CTGTCGGCC-------TT----GGCCCCGACGGCTACAACGCCG-----------------------------------------------------------------------------------------------ACGCCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................AGCAGCCAGAGCG----------------GACAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
..GTA------------------CGAAGCAGCTGAGC----------------------------------------CGG------------------CAGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
..............................................................................................................................................................................................................................................................................................................................................................................GCACAGCAAGAAAACGTA------------------------------------------------------------GA----------------------GC------T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
....................................................................................................................................................................................................................................................................................................................................................AGCCAGAGACAAATCCAGAGCAGTCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
..........................................................................................................................................................................................................................................................................................................................................................AGACAAATCCAGAGCAGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.......................CGAAGCAGCTGAGC----------------------------------------CGG------------------CAGAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCTGCAGCATGGTCTT................................................................................................................................................................1911.001100000
............................................................................................................................................................................................................................................................................................................................................................................CAGCACAGCAAGAAAACGTA------------------------------------------------------------GA----------------------GC------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
........................................................................................................................................................................................................................................................................................................................................AGCAGCCGAAACAGCCAGAGACAAATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
..................................................................................................................................................................................................................AGCA---------------------------------------------------GCAGCAGCCAGAGCG----------------GA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCAGTAAAG-------------------------------------------------------------------------------------------TC----------------------------------------------------------------------------------------GAGAAC.............................................................................................................................................................................................2011.001000001
...........................................................................................................AGC-------------------------------------------------------------------------------------------------AGCAGCA---------------------------------------------------GCAGCAGCCAGAGCG----------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.501100000
droGri2
ACGGC------------------AGCAC---------------------------------------------------------------CA----------------------------------------------------------------------------------------------------------------------AC-----------AGCAGCAG----CAGCAGCAGCAGCAGCA------GCA---GC----------------------------------------GTCAA---------------------------------------------------------------------------------------------------------------------------CATCAGCAGCAGCAG-----CAGCAGCAGTTAA-AA------------------------------CA---------ACAGCAGCAT---CA---------------------------------------------------GCAGCA------GCAA------------AA------------------------------------------------------ACAGCAGCAGCAACAGCAGCA------GCAGCTAAAACAGCA------AC------------------AGC-----------------------------ATCAGC---A------------GCAGCAG---------CAT---CAGCAGCAGCAGCAGCAGCAGCAGCT------------------------------AAAACAA----CA---ACAA---------------------------------CAGCAGG----------------ACCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------AGCAAACTTCGCCA----------------------------------------CGGCTTCAATGTGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................................................................................................................................................................................AC-----------AGCAGCAG----CAGCAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.20440
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------AC------------------AGC-----------------------------ATCAGC---A------------GCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................19200.05110
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---------CAT---CAGCAGCAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................21200.05110
droWil2
CTGGC------------------GATGGCAATGCTG----------------------------------------CAAC---A---ACAACAG----------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAATTGCAGCATCAGCAACAGCA-------------ACAGCAGCAACGAATGCAACAG---------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAA-----CAGC-------------------------------------AGCAACAATTGCAGCAACAG---------------------------------------------------------------CAGCA------ACAA------------TT------------------------------------------------------GCAGCAACAGCAACAGCAACA------GCAGCAACAATTGCA------AC------------------AAC-----------------------------AGCAGC---A------------ACAACTG---------CAG---CAACAGCA---------------ACAG------------------------CA----------------ACAGCAGCAACAAATGCAACTGCAAC-------------------------------------------------------------------------------------------------------------------------------------------AACAACAGCAGCCACAATGGCA-----------------------------------------------------------------------------------------GC-----AAC--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................TGCAGCATCAGCAACAGCA-------------ACAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.25100010
......................................................................................................................................................................................................................................................TGCAGCATCAGCAACAGCA-------------ACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.25101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------ACAG------------------------CA----------------ACAGCAGCAACA....................................................................................................................................................................................................................................................................................19200.15300030
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAA-----CAGC-------------------------------------AGCAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.15300030
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAATGCAACTGCAAC-------------------------------------------------------------------------------------------------------------------------------------------AACAAC.....................................................................................................................24200.15303000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACA------GCAGCAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.15300030
.............................................................................................................................................................................................................................................................................................CAACGAATGCAACAG---------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAA-----C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2580.13101000
.......................................................................................ACAACAG----------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAATTGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2280.13101000
..................................TG----------------------------------------CAAC---A---ACAACAG----------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAATTGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2890.11100010
.............................................................................................................................................................................................................................................................TCAGCAACAGCA-------------ACAGCAGCAACGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2690.11100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACTGCAAC-------------------------------------------------------------------------------------------------------------------------------------------AACAACAGC..................................................................................................................21200.10202000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAATTGCA------AC------------------AAC-----------------------------AGC..............................................................................................................................................................................................................................................................................................................................................................................................................19100.10100010
...............................................................................................................................................................................................................................................................AGCAACAGCA-------------ACAGCAGCAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.09100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC-------------------------------------------------------------------------------------------------------------------------------------------AACAACAGCAGCCACAATG........................................................................................................23140.07101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------CA----------------ACAGCAGCAACAAATGCAACTGC.........................................................................................................................................................................................................................................................................27150.07101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACA------GCAGCAACAATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................25160.06100010
..........................................................................................................................................................................................................................................................................................................AG---------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAA-----CAGC-------------------------------------AGCAACAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25160.06100010
...................................................................................A---ACAACAG----------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.06101000
.........................................................................................................................................................................................................................................................AGCATCAGCAACAGCA-------------ACAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23170.06101000
....................................................................................................................................................................................................................................................................................................TGCAACAG---------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAA-----CAGC-------------------------------------AGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24170.06101000
............................................................................................................................................................................................................................................................ATCAGCAACAGCA-------------ACAGCAGCAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24190.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACTGCAAC-------------------------------------------------------------------------------------------------------------------------------------------AACAACAGCAGC...............................................................................................................24200.05101000
.......................................................................................................................................................................................................................................................................................................AACAG---------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAA-----CAGC-------------------------------------AGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAATGCAACTGCAAC-------------------------------------------------------------------------------------------------------------------------------------------AACAACAGCA.................................................................................................................28200.05101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAACA------GCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA---------------ACAG------------------------CA----------------ACAGCAG.........................................................................................................................................................................................................................................................................................21200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAATGCAACTGCAAC-------------------------------------------------------------------------------------------------------------------------------------------AACAA......................................................................................................................23200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAATGCAACTGCAAC-------------------------------------------------------------------------------------------------------------------------------------------AACAACAGC..................................................................................................................27200.05101000
......................................................................................................................................................................................................................................................................................................CAACAG---------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAA-----CAGC-------------------------------------AG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAACA------GCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA-----CAGC-------------------------------------AGCAACAATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACA------GCAGCAACAATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000
...............................................................................................................................................................................................................................................................AGCAACAGCA-------------ACAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAATGCAACTGCAAC-------------------------------------------------------------------------------------------------------------------------------------------AACAACA....................................................................................................................25200.05101000
dp5
GGAGG------------------A--------------------------------------------------------------TACCGCATCCGAA-----------CAGG----------------AACCACAGCCGGTCGACAG--------CAACAACAACGATCCACAGATACCACAAGTGGGCGACAGC---------A-----------------------------------------------------------------------------------------GTGA------G---------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------CAACAACAACAACAAAAACAAAAACA---------------------------------------------AAA---------------------------CCAACAG--------------------------CAAC-------------------------------------------------------------------------------------------------------------------------------------------------------GA-------CGCAACAGAGAAG-----------------------------------------TACAAA-------ATGGTACTG-----------C--CGTTCGGTC-------TC----GGCCCCGACGGGCACCACGTGG-----------------------------------------------------------------------------------------------ACGCCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTC-------TC----GGCCCCGACGGG...............................................................................................................2011.0010100000000
...................................................................................................................................................................................CCACAAGTGGGCGACAGC---------A-----------------------------------------------------------------------------------------GTGA------G---------------------------------------------------------------------------------------------------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGGTC-------TC----GGCCCCGACGGG...............................................................................................................2211.0010100000000
........................................................................................................................................AGCCGGTCGACAG--------CAACAACAACGATCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010000000
................................................................................................................GG----------------AACCACAGCCGGTCGACAG--------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
droPer2
GGAGG------------------A--------------------------------------------------------------TACCGCATCCGAA-----------CAGG----------------AACCACAGCCGGTCGACAG--------CAACAACAACGATCCACAGATACCACAAGTGGGCGACAGC---------A-----------------------------------------------------------------------------------------GTGA------G---------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------CAACAACAACAACAAAAACAAAAACA---------------------------------------------AAA---------------------------CCAACAG--------------------------CAAC-------------------------------------------------------------------------------------------------------------------------------------------------------GA-------CGCAACAGAGAAG-----------------------------------------TACAAA-------ATGGTACTG-----------C--CGTTCGGTC-------TC----GGCCCCGACGGGCACCACGTGG-----------------------------------------------------------------------------------------------ACGCCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTG-----------C--CGTTCGGTC-------TC----GGC........................................................................................................................1913.003210000
....................................................................................................................................................................................CACAAGTGGGCGACAGC---------A-----------------------------------------------------------------------------------------GT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..................................................................................................A-----------CAGG----------------AACCACAGCCGGTCGACAG--------CA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------------------------------------------------------------------------------------------------------------------------------------GA-------CGCAACAGAGAAG-----------------------------------------TACAAA-------ATGGT...................................................................................................................................................................2711.001000001
................................................................................................GAA-----------CAGG----------------AACCACAGCCGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..................................................................................................................................................................................ACCACAAGTGGGCGACAGC---------A-----------------------------------------------------------------------------------------GTGA------G---------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
......................................................................................................................................................................................CAAGTGGGCGACAGC---------A-----------------------------------------------------------------------------------------GTGA------G---------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
droAna3
GAAGC------------------A---------------------------------------------------------------GCAGCA------------------------------------------------------------------------------------------------------------------------------------------C---A--------------------------------------------------------C------------------------------------------------------------------------------------TCAGCAACAGCAGCAATATCAGGAGCAATATCAGCAGCAGCAATATCAGTTGGAATTGGAA------AA------------------------------------------------------------------------------GCAG---CAACAGCAAAAGCAGAAACAC---CCC---------------------T---ATCAGCAACAA------------CTCGAA---------------------------------AA------------------------------------------------------GCA------AC------------------AAC-----AGCAGCAGCATTTGATGGAGCAACAGCAACTAC---------------AACAT------CAGCAACAG------TA---------------TTTG------------------------CAACAG----------CAACACCAA------------------------------------CAG----------------CAACTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------GCA------AC------------------AAC-----AGCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
droBip1
CCGCC------------------ACGAGGAGCTGTGC----------------------------------------GAGCAGT---A------------------------------------------------------------------------------------------------------CAAG-------------CG---------------------------GGAGAACACCTGGAGCACGCTGGCCAGTG-------------CGGGCATGAACCGGCGCAAC--------------------CAGCAGAACCAGCAGCCGGA---------------------------------------TCAGCCACACCAGCCCAATCAGATCCCA------------------------------------------------------------------------CACCAGCAA---------------------------------------------------------------------------------------------CAGCA------ACAACAACAGCAGCAGCAACAACAACAGCAG------------------CAG---CA-----------------------------------------------------------------------------------------------------------------------ACAAC---------------AACAACAGCAGCAGCAGCAG---------------------CAACC------------------------------ACAACAA----CA---ACAG---------------------------------CAA-----------------------------------------------------------GCGGATGCTGGTGGCAACATACCTTCG-----------C--TCCTG--------------------------------GACATGG-----------------------------------------------------------------------------------------------TCATAASizeHit CountTotal NormTotal
No Reads
droKik1
CCGGA------------------GAAACCAGTAACCCCAGCTCCGGACAGTCCTTGTCAGCCTGATGAAGACACTAC------AACAACGACAACCACCTGTTCAACAAC-------------------------------------------------------------------------------------------------AACTACA---------------------------------------------------AC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGACTACAACAACAACTACAACAA------------C---------------A---------------------------ACAACG------ACTA------------CAACAACAACAACTA---CAACAA---------CGA---CT------------------------------------------------------------------------------------AC-----------------------------AACAACAAC---------------GACTA------CAACAACAA------CG---------------ACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACCAC-------------------------------------------------------------------------------------------------------TAC--SizeHit CountTotal NormTotal
No Reads
droFic1
CCATC------------------GCC-C------------------------------------------------CAGC---A---GCAGCA------------------------------------------------------------------------------------------------------------------------------------------G----CATCAACAGCAGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------GAGCATGCATCACCATCAGCAGCAGCAACAACATATGCAACAGCAG------CA------------------------------------------------------------------------------GCAA---CAACACCAGCAACAGCAACAA---------------------------C---ATCAGCAACAG------------CAACAA---------------------------------CATCAACAACA---------------------------------------------GCA---------------------------GCAGCAG--------------------------CATC---AGCAACAGCAGCAACATCAA---------CAACAG---------------------CAGCA---------------ACAT----------------------CAACAGCAG------------------------------------CA-------------------GCAGC---------AAC------AACA--------------------------------TCCCAG----------CA--TTGGCATGT-------TT----GATGCCAACGAGGTCAAC---G-----------------------------------------------------------------------------------------------ATGTCASizeHit CountTotal NormTotal
No Reads
droEle1
GACGC------------------A---------------------------------------------------------------GCT--------------------------------------------------G-------ACCTTTATGACG------------------------------CGCC-------------AGCCGGAGCAGCCGCCGACCAAAAGGACG--------------------------------------------------------CGCACGAG---------------------------------------------------------------------------------------------------------------------------------------------CTAGGAATTAAGCTGGGGAGCACAACA-TTTGCCACCATTAACAACAACAAT---AACGACCACAACAACAACAACAACAG---------C------------------AACA------------------------------------------------------------------GCA------------------------------------------------------------------------------------------------------------ACAGCAG--------------------------TTGC---AGCAGCCACA---ATAACAA---------C------------C---------------ACACCGACAACACCA---CCATTAAGCACAACAG----------CA------------------------------------------------------------------------------------------------------GCAACAACAAGC------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------ACAGCASizeHit CountTotal NormTotal
No Reads
droRho1
GCAAC------------------A---------------------------------------------------------------GCAGCAACAACCAAAACAGCAGC-------------------------------------------------------------------------------------------------AACAACA---------------------------------------------------GC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAACGGCAGCAACAGCAGCAA------------C------------------------------A------------ACAGCA------GCAA------CAACAGCAGCAACAACAGCAG------------------CAG---CA------------------------------------------------------------------------------------AC-----------------------------AGCAACAAT---------------ACCAG------CAGCAACAC------CA---------------ACCA------------------------AAACAG----------CA---GCAA---------------------------------CAACAGGCC-----ACAAA--TCAACCGCAACAACAGGAACAAGACTTTTT--------------------------------GTTTATGAAAACGGAGCGGGTCAACAACCTCAAATATTGGCCGGGTTCAATGGCGTCAATGTGC-----------------------------------------------------------------------------------------------AACCTGSizeHit CountTotal NormTotal
No Reads
droBia1
TGC--------------------------------------------------------------------------------AACGGCAGCAACAACC-----------AAGC----------------GGCGACAGGCGGTAAACAG--------CAGCAGCAGCAGC------------------GGCAGCAGC---------G-----------------------------------------------------------------------------------------GCGG------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAACAACAA------------C------------------------------AACAACAATAGCAACAGCG------GCAG------------GC------------------------------------------------------ACAGCAACAGCAACAGCAACAAGCGCTGCAGTCGCAGTCGCA------GC------------------AGC-----------------------------AGCTGC---A------------GTAGCAG---------CAG---CAGCAGCA---------------GCAG------------------------CA----------------GCAGCAGCAACGCTAGCGTCGGCAGCGACGCCAGCAGCATGTCCAAG---ACCAGCAGCGG------------------------------------TAT--------------------------------------------TC--------------------------------CAAATGCAG-----------------------------------------------------------------------------------------------CAGCAASizeHit CountTotal NormTotal
No Reads
droTak1
GCTCAGCCTGAGCGCTGCGCAGGAGTAC------------------------------------------------------------CAGCA---------------------------------------------------------------------------------------------------------------GC-ACCAAC-----------AGCATCAG--------------------------------------------------------------CAGCAT---------------------------------------------------------------------------------------------------------------------------------------------CAACAACAC---------------------------------------------CAGC---------------------AGCAGCAA---C------------------ATCACCAACAGCAGCAGCAGCAGCACCA------------ACAG------------CATCAACATCAGCAA------------------CA------------------------------------------------------------CCA---------------------------AC-----------------------------AGCATCAGCA------------ACATCAG---------CAACAC---------------------------CA---------GCA---------------GC-----ATCA--ACATCAG---------------------------------CAGCAGGGCG-------------------------------------------GCGGTGG--------------------------------------------TC--------------------------------CC------------------------------GGCTCCCAGCAGCAAATGGTGCCGGTCAGCGTGGCCGCTGCCCTGCAGGTGGCTGCGGCCAATGCGGC-----TGC--SizeHit CountTotal NormTotal
No Reads
droEug1
CCGGC------------------GGCA-----------------------------------------------------------TACAC------------------------------------------------------------------CAGCAGCATCAGC------------------AACAGCAGCACCAGCAGC-AACAAC-----------A----------------------------------------GC----------------------------------------AACAA---------------------------------------------------------------------------------------------------------------------------CATCAGCAACAACAG---------------------------------------------CATC---------------------AG---------------------CAGCAACAACACCACCA---------G---------CAGCA------GCAACACCACCAACAGCAGCAACACCACCAA------------------CA--------------------------------------------------------------------------------------------------------------------------GCAAC---A------------ACATCTACAACAGCAGCAGCAG-------------------------------------------------------------------CAACACCAG------------------------------------CAG----------------CAGCAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC--SizeHit CountTotal NormTotal
No Reads
dm3
AGC--------------------------------------------------------------------------------AGCAGCAGCAGCACCACC---------ACACAGCAGCGCAGCACTACCACCACAGCCACCAGACAGCGCACCACCAGC------------------------------AG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA------------------------------------------GCAACAGCAGCACCACCAGCAGCAACAACAGCAA---------------------------------------------------------------------CAG------------CA------------GCA------------------G---CAACAGCAACAGCAGGCAC------------AGCAGCA------GCACCT------GAGCCACCACCACCACCACCATCATCACCATC-----AGCAGCAGTTCTTGATGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGACAGC---------AA---------------------------------------CCTGACCTTA-----------T--GCGA---CA-------AC----GACGACGACGACTACGACGCCG-----------------------------------------------------------------------------------------------CCGCACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------GCA------------------G---CAACAGCAACAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAGCAA---------------------------------------------------------------------CAG------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAA---------------------------------------------------------------------CAG------------CA------------GCA------------------G---CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAA---------------------------------------------------------------------CAG------------CA------------GCA------------------G---CAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CGCTG------------------G---C---------------------------------------------------------------------------------------------------------------------------------CAGC------------------------------GGC-------------GGCGGC-----------AGCAGCAG--------------------------------------------------------------TAGCAG---------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAG---------------------------------------------CAGC---------------------AGCAGCGACAGC------------------AGCAGCAGCAACATAAGCAACATCAGCAACATAA------GCAACATCAGCAACA---------------TCAGCAACA--------------------------------------------------------------------------------------------------------------------------------------TAAG---CA------------ACATCGG---------CAA---CAT------------------------CA---------GCA---------------AC-----AGCA--ATCATAG---------------------------------CAAC----------------------------------------------------------------------------------------------------------------------------------------------GCTGCATACTCATTAGCCGTTCATAGCTATCAAAAGCAAA--------------------------------------------------------TAGAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................GCGGC-----------AGCAGCAG--------------------------------------------------------------TAGCAG---------------------------------------------------------------------------------------------------------------------------------------------CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................212163.003260000322400000000000
................................................................................................................................................................................................................GCGGC-----------AGCAGCAG--------------------------------------------------------------TAGCAG---------------------------------------------------------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................192114.002280000224400000000000
................................................................................................................................................................................................................GCGGC-----------AGCAGCAG--------------------------------------------------------------TAGCAG---------------------------------------------------------------------------------------------------------------------------------------------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20241.0082000082000000000000
................................................................................................................................................................................................................GCGGC-----------AGCAGCAG--------------------------------------------------------------TAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1838.0024000024000000000000
................................................................................................................................................................................................................GCGGC-----------AGCAGCAG--------------------------------------------------------------TAGCAG---------------------------------------------------------------------------------------------------------------------------------------------CAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2215.00500005000000000000
................................................................................................................................................................................................................GCGGC-----------AGCAGCAG--------------------------------------------------------------TAGCAG---------------------------------------------------------------------------------------------------------------------------------------------CAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200002000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA--------------------------------------------------------------------------------------------------------------------------------------TAAG---CA------------ACATCGG---------C..........................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG---CA------------ACATCGG---------CAA---CAT------------------------CA---------GC.............................................................................................................................................................................................................................................................................................................................2211.00100000000000100000
........................................................................................................................................................................................................................................................................................................GCAG---------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAG---------------------------------------------CAGC---------------------AGCAGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2451.00500000500000000000
..................................................................................................................................................................................................................GGC-----------AGCAGCAG--------------------------------------------------------------TAGCAG---------------------------------------------------------------------------------------------------------------------------------------------CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1971.00700007000000000000
..................................................................................................................................................................................................................GGC-----------AGCAGCAG--------------------------------------------------------------TAGCAG---------------------------------------------------------------------------------------------------------------------------------------------CAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2061.00600006000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGG---------CAA---CAT------------------------CA---------GCA---------------A............................................................................................................................................................................................................................................................................................................1840.25100010000000000000
droSec2
AGC--------------------------------------------------------------------------------AGCTGCCGCAGTATGCGAAG--------------------------------CAGGTG-------GCTCATATGCAGC------------------------------AGC-------------AGCAGCAGC--------AGCAGCA-----------------------------------------------------------------GCAG------CAGCAACAGGACCAACGCACC-------------------------------------------------------------AGC----------------------------------------------------------------CTGCATCCGCAAA-TCCATCACCACCACCAACAGCAGC---------------------------------------------------------A------------------A---------CAG------------------------------------------------CAGCAGCAGCAACAGCAGCAGCAACA---------------------------------------------GAA---------------------------ACAGCAG--------------------------CAAC---ATCATATGCA---GCAGCAG---------C------------A---------------GCAGCA----------------------------------------GCAGCAA------------------------------------------------------------------------------------------------------CAACCTTTGTCACCACCTCA-----------C--CCA----------------------CCCGGCAGC---------A-----------------------------------------------------------------------------------------------GCAACASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................G------CAGCAACAGGACCAACGCACC-------------------------------------------------------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
..................................................................................................................................................................................................................................................................................................................CAGCAACAGGACCAACGCACC-------------------------------------------------------------AGC----------------------------------------------------------------CT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
..........................................................................................GCAGTATGCGAAG--------------------------------CAGGTG-------GCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
..........................................................................................................................................................................................................................................................................................................AG------CAGCAACAGGACCAACGCACC-------------------------------------------------------------AG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
................................................................................................................................................................................................................................AGCAGCA-----------------------------------------------------------------GCAG------CAGCAACAGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAACA---------------------------------------------GAA---------------------------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------A---------CAG------------------------------------------------CAGCAGCAGCAACAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27160.0610100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---------------------------------------------------------A------------------A---------CAG------------------------------------------------CAGCAGCAGCAACAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26180.0610010
..............................................................................................................................................................AGC------------------------------AGC-------------AGCAGCAGC--------AGCAGCA-----------------------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------A---------CAG------------------------------------------------CAGCAGCAGCAACAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GCAGCAG---------C------------A---------------GCAGCA----------------------------------------GCAGCA..........................................................................................................................................................................................................................................................................................22200.0510010
droYak3
GCAGC------------------GA--------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------CTCAGA-----------AGCAGCAGGCCA--------------------------------------------------------CGCAGCAG---------------------------------------------------------------------------------------------------------------------------------------------CAACAAATT---------------------------------------------CAGC---------------------AGCAGCAATTGC------------------AGCACCAACAACAGATGCAACAACAACAACAGCA------GCAG------------CAACAACAACA---A---------------CAGCAG---CA--------------------------------------------------------------------------------------------------------------------GCAA---CA------------ACAACAG---------CAG---CAG------------------------CA---------GCA---------------AC-----AACA--ACAGCAG---------------------------------CAGCAGATCATCCAGCAACAGGCAACTGC---------TAC------TTCT--------------------------------GCCCTT-----------T--CTGACATCC-------TT----GGCTTTGGCGAGGACAGCGTGG-----------------------------------------------------------------------------------------------CTGCCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAACTGC---------TAC------TTCT--------------------------------GCCCT................................................................................................................................................................2511.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA--ACAGCAG---------------------------------CAGCAGATCATCCA..........................................................................................................................................................................................................................................2511.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---------CAG---CAG------------------------CA---------GCA---------------AC-----AACA--AC..............................................................................................................................................................................................................................................................................................21200.10202000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG------------CAACAACAACA---A---------------CAGCAG---CA--------------------------------------------------------------------------------------------------------------------GCA.............................................................................................................................................................................................................................................................................................................................................................................................................27120.08101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---A---------------CAGCAG---CA--------------------------------------------------------------------------------------------------------------------GCAA---CA------------ACAACAG---------...........................................................................................................................................................................................................................................................................................................................................................................25130.08101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---A---------------CAGCAG---CA--------------------------------------------------------------------------------------------------------------------GCAA---CA------------ACAACAG---------C..........................................................................................................................................................................................................................................................................................................................................................................26130.08100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---A---------------CAGCAG---CA--------------------------------------------------------------------------------------------------------------------GCAA---CA------------ACAACAG---------...........................................................................................................................................................................................................................................................................................................................................................................26130.08101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CA--------------------------------------------------------------------------------------------------------------------GCAA---CA------------ACAACAG---------CAG---CAG------------------------CA---------GC.............................................................................................................................................................................................................................................................................................................................26170.06101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------GCAG------------CAACAACAACA---A---------------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---A---------------CAGCAG---CA--------------------------------------------------------------------------------------------------------------------GCAA---CA------------ACAACAG---------CA.........................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---A---------------CAGCAG---CA--------------------------------------------------------------------------------------------------------------------GCAA---CA------------ACAACAG---------CA.........................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
droEre2
GCAGC------------------GA--------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------CACAGA-----------AGCAGCAGGCCA--------------------------------------------------------CGCAGCAG---------------------------------------------------------------------------------------------------------------------------------------------CAACAAATT---------------------------------------------CAGC---------------------AGCAGCAATTGC------------------AGCACCAACAACAGATGCAACAACAGCAGCAGCA------ACAACAACAGCAGCA---------------GCAACAACAG---------CAG---CA------------------------------------------------------------------------------------GC-----------------------------AGCAACAAC---------------AACAG------CAGCAACAA------CA---------------G-------------------------------------------CA---GCAT---------------------------------CAGCAGATCATCCAACAACAGGCAACTGC---------TAC------TTCT--------------------------------GCCCTT-----------T--CTGACATCC-------TT----GGCTTTGGCGAGGACAGCGTGG-----------------------------------------------------------------------------------------------CTGCCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT--------------------------------GCCCTT-----------T--CTGACATCC-------TT----GGCT.......................................................................................................................2511.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------TT----GGCTTTGGCGAGGACA...........................................................................................................1911.0010010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAAC---------------AACAG------CAGCAACAA------CA---------------G-------------------------------------------C.................................................................................................................................................................................................................................................................................................2740.2511000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAG---------CAG---CA------------------------------------------------------------------------------------GC-----------------------------AGCAACAAC---------------A........................................................................................................................................................................................................................................................................................................................................................................................24140.0710000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---------------AACAG------CAGCAACAA------CA---------------G-------------------------------------------C.................................................................................................................................................................................................................................................................................................22190.0510000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------ACAACAACAGCAGCA---------------GCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA------ACAACAACAGCAGCA---------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0511000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------ACAACAACAGCAGCA---------------GCAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------GCAACAACAG---------CAG---CA------------------------------------------------------------------------------------GC-----------------------------AGCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CA------------------------------------------------------------------------------------GC-----------------------------AGCAACAAC---------------AACAG------CAGCA.........................................................................................................................................................................................................................................................................................................................................................................24200.0511000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---------------AACAG------CAGCAACAA------CA---------------..............................................................................................................................................................................................................................................................................................................................................20200.0510000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAC---------------AACAG------CAGCAACAA------C..............................................................................................................................................................................................................................................................................................................................................................20200.0510000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------ACAACAACAGCAGCA---------------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000

Generated: 05/17/2015 at 04:57 AM