dvi_19352

Name	Class	Family	Strand
Helitron-1N1_DVir	RC	Helitron	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GGTTTTCCTTGATCAAGACAACAAGCTAGGTCTACCTAGGCATGTTCGTCAGTCCGCTTGTCTGCTTCGATCTCAGCGACCACAAAAGCTAGGTGAAATGTAGAAAGAAGGTGGCTTTACGTTATGTAAAGGGTATCTCATAGTCGGCCACTTTCGATTAGAGCACTTGTAATTTGTTTAACTTTTGTCCTTTGTTCGCAGTACTTTCCGGATTCTGGCACACGCGGACGCCGCGAGGGCACCGGCTCAAC ************************************************...(((((..(((((((..((((.(((..........)))))))..)).))))).....)))))((((((.....))))))(((..(((.(((((((......)))))))))).)))..................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	V047 embryo	GSM1528803 follicle cells	SRR060675 140x9_ovaries_total	SRR060682 9x140_0-2h_embryos_total	SRR1106730 embryo_16-30h	V116 male body	M027 male body	V053 head
.......................AGCTAGGCCTACCTAGGG..................................................................................................................................................................................................................	18	2	1	1.00	1	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................GTACTTTCCGGATTCTGGCACACGCGGA.......................	28	0	1	1.00	1	0	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................................CTTTCCGGATTCTGGCACACGCGGACGCCGCGAGGGCACCGGCT....	44	0	1	1.00	1	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................GTACTTTCCGGATTCTGGCACACGCG.........................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................ACACGCGGACGCCGCGAGGGCACCGGCT....	28	0	1	1.00	1	0	0	1	0	0	0	0	0	0
...............................CTACCTAGGCATGTTCGTCAG.......................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TCGCAGTACTTTCCGGATTCTGGCAC..............................	26	0	1	1.00	1	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................CGGATTCTGGCACACGCGGACGCCG..................	25	0	1	1.00	1	0	0	0	0	1	0	0	0	0
.......................AGCTAGGACTACCTAGGG..................................................................................................................................................................................................................	18	2	2	0.50	1	0	1	0	0	0	0	0	0	0
...................................CTTGGCATGTTGGTCAGTCA....................................................................................................................................................................................................	20	3	9	0.11	1	0	0	0	0	0	0	0	0	1
....................................TACACATGTTCGGCAGTCCG...................................................................................................................................................................................................	20	3	9	0.11	1	0	0	0	0	0	0	0	1	0
.......................AGCTAGGACTACCAAGGG..................................................................................................................................................................................................................	18	3	20	0.05	1	0	1	0	0	0	0	0	0	0

CCAAAAGGAACTAGTTCTGTTGTTCGATCCAGATGGATCCGTACAAGCAGTCAGGCGAACAGACGAAGCTAGAGTCGCTGGTGTTTTCGATCCACTTTACATCTTTCTTCCACCGAAATGCAATACATTTCCCATAGAGTATCAGCCGGTGAAAGCTAATCTCGTGAACATTAAACAAATTGAAAACAGGAAACAAGCGTCATGAAAGGCCTAAGACCGTGTGCGCCTGCGGCGCTCCCGTGGCCGAGTTG ************************************************...(((((..(((((((..((((.(((..........)))))))..)).))))).....)))))((((((.....))))))(((..(((.(((((((......)))))))))).)))..................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	GSM1528803 follicle cells	M061 embryo	SRR060672 9x160_females_carcasses_total	SRR060687 9_0-2h_embryos_total	SRR060689 160x9_testes_total	M028 head	SRR060669 160x9_females_carcasses_total	SRR060659 Argentina_testes_total	V116 male body
.................................................................................................................................................................................................................................CCTGCAGCTCTCGCGTGGCC......	20	3	6	0.50	3	0	2	0	0	1	0	0	0	0	0
.....AGGAACTAGTTCCGTAGT....................................................................................................................................................................................................................................	18	2	3	0.33	1	0	0	0	1	0	0	0	0	0	0
.........................GATCAAGATCGATCCGTACAG.............................................................................................................................................................................................................	21	3	3	0.33	1	0	0	1	0	0	0	0	0	0	0
..............................................................................TGGGGTTTTCGATCCAGTT..........................................................................................................................................................	19	2	4	0.25	1	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AAGCTTCATGAAAGGCTT.......................................	18	2	6	0.17	1	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................TAAACAAGCGTCAAGAAAG...........................................	19	2	6	0.17	1	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CCGGCGGCCCCCCCGTGGC.......	19	3	15	0.07	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................TGGAAACAAGAAACAAGC.....................................................	18	2	18	0.06	1	0	0	0	0	0	0	0	1	0	0
...AAAGGAACTAGTTCAGGTTT....................................................................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................CTAATCTCGGGAACGTTAG.............................................................................	19	3	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................AGAAATTGAAAGCAGGAA...........................................................	18	2	20	0.05	1	0	0	0	0	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_13049:10331212-10331462 +	dvi_19352	GGTTTTCCTTGATCAAGACAACAAGCTAGGTCTACCTAGGCATGTTCGTCAG--TCCGCTT-----------------------------------------------------GTC---------------------------------------------------------TGCTTCGATCTC-AGCGACCACAAAAGCTAGG-------TGAAATGTAGAAAGAAGG------T----------------------------------------GGCTT-TA-----------------------------------------CG---------------------------------TT--ATGTAAAGGGTA-----TCTC-ATAGTCGGCCACTTTCGATTAGAGCACT--------------------------------------TGTAATTTGTTTAACTT------------------TTGTCCTTTGTTCGCAGTACTTTCCGGATTCTGGCACACGCGGACGCCGCGAGGGCACCGGCTCAAC
droMoj3	scaffold_6500:13422838-13423138 -		ATATATTCTTGATCAGCGCGACGAGCTGAGTCGATATAGCCCTGTCACTGCAGCGCAGCCTA-AGCGCAGTCGCTGCTTACTGCGCAGTTAATAGAGCGCAGGCTTATGCGTGTGTGTGGAAG--CAT----GTGTAT--GTATGTGTGCATAGA---------------------------------AGAAGT-------GCAGAATGA---TTAGAA---------------------------------------------------------------------------------------------------------------------------TAACAGCTTG------------GAGGGCTCAGGGTA-----TCTC-CTAGTCGAGCAATCTCGACTGGAGCCTTCT-TACTTGTTTCTTT-TTTTTTTTGTTTGCCTGGACTTTTCGAATGTTGGGGGC--GGGGCGGTGGCACTCACGCCC----------------------------------------------------------ACAT
droGri2	scaffold_15203:6413124-6413313 +		ATATATTCTTGATCACCATTGAAAGCCGAGACGATTTAGCCATGTTTGTCTG--TCTGTCC-----------------------------------------------------GCAAG--TCT--------GAATTTCTCT---------------------------AGGCTCACGCCGATCTC-AGAAGCTTTAAGTAGC----------AGAAATTTTGAATAAAAG------T----------------------------------------AACTTG--------------------------------------------------------------------------------GTTACAT-AATCTATCTAATCTA-ATAG-----CTCTCTTGACTAGAGATTTCT-TACTTG---------------------------------------------------------------------------------------------------------------------------------TT
droWil2	scf2_1100000004961:2380268-2380485 -		ATATATTCTTGATCAGCATGACGAGACGAGTTTAAATAGCCATGTCCGTCCG--TCCGTCT-----------------------------------------------------GTCCG--TCT----GTCTG--GA-------------------------TCAAC--G---------CAAACTC-CTAGACCGTTAGAGCTACAGAGAAATTGAAATTTTGCATGTAGGCTTGTATG-----------TACTGCAGGGGTTGTATATCTCGGATT---------TAGCCGGATCGGACCACTATTTTATATAG-----------------------------------------------------------------------------------------------TGACTTT----------------TCTCAATA--------------------------A----------------------CT----TTG-------------------------------------------------------TT
dp5	2:18196978-18197146 +		ATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGACTGTATG--TCTGTCC-----------------------------------------------------GTCCG--TC---------------------------------------------------CGCCTCTAGCTC-AGAGACTATAAGAGCTAGAGTTA---CGAAATTTTATATCTAGACTTCTGTG-----------ATATGTCA--------------------------------------------------------------------------------------------------------CT--GTTTCAAGTATA-----TTTC-ATAAC-------ATCC--------------------------------------------------------------------------------------CA----C-------------------------------------------------------TTTC
droPer2	scaffold_15:1105279-1105424 -		ATATATTCCTGATCAGCATCAATAGCCGAGTCGATATAGCCGTGTCTGTCTG--TCCGTCT-----------------------------------------------------G-----------------------------------------------------------------GTTCTC-ATAGACTATACAAGCTAAAGCAA---TGAAATTTTGGATCCAAACTCCTGTG-----------ATGTCACA--------------------------------------------------------------------------------------------------------TT--GAATCAATTGTA-----TTTC-AAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droAna3	scaffold_12913:19802-19970 -		ATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTG--TCTGTCT-----------------------------------------------------GTCTG--TT---------------------------------------TCTAC--GCAA-ACTAGTC--------------------------TTA---T-----GTACAAAAAA------------------------TTATG------------------------------TACAAATCGGCCGACTATATCCTATAGCTGTCAT-------AGAACTATCG----------------------------------------------------------G-AATTGG----------------------------------------------------------CATAACTTTG-----------------GT----G-------------------------------------------------------TTTT
droBip1	scf7180000391880:22795-22899 -		ATATTTTCTTGATCAGGATCACCTCCTGAGTTGATATAAGCAAGTCCGTCTG--TCCGTCT-----------------------------------------------------GTCTG--AC-------------------------------------------------------CGTCTGTC-TGTTTCTACGCAAACTAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAG-TA-----------------------------------------------------------------------------------------------TAT-------------------------------------------------------AA
droKik1	scf7180000302486:2043614-2043736 +		GTAAGTGATGCCTGAAAATCAGCTTCCGGATTGGAGA---CTCGTTTACGCT--TTCGTTA------------------------------------------------------TTTA--CT-------------------------------------------------------TTTTCCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGTACTTCCCGGACTCGGGTACAAGGGGAAGACGGGAGGGCACTGGATCCAC
droFic1	scf7180000453807:775540-775609 -		CCTTTTTCCACCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGCAGTATTTTCCGGATTCAGGGACGCGAGGACGACGCGAAGGAACCGGTTCGAC
droEle1	scf7180000490325:20930-21139 +		ATATATTCTTGATCAGCATCACTATGCGAGTCGATCTAGCCATGTCCGTCGG--TCCGTCC-----------------------------------------------------GTT---------------------------------------------------------TTTTTCTATTGC-AGGTAGTATATAAGTCGGAAC------------------------------------------------------------------------------AAGCCGGATCGGACGACTATAGCATATAGCTCCCAT-------GG---------------------------------------GAGCTTCA-----TGTT-ATAGTCGTCCGATTTTGATTAAATT------------------------------TAAACCGTAATTCTGAAATATTTAACCA------------------TTACTATATG-------------------------------------------------------TT
droRho1	scf7180000771332:13173-13333 -		ATATATTCTTGTTCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTGAT-CAAAGTTTCTATCTCC------AT-------------------------------------CTC---------------------------------------------------------------CCTCGC-ACT----------------------------------------------------------------------------------------CCCTT-T------------------------------------------AC---------------------------------CT--GAGTAACGGGTA-----TCTG-ATAGTCGGGG-CACCCGACTATAGCGTTCT-CTCTTGTT---TTGTTTTAGTT-------------------------------------------------------ACT-------------------------------------------------------TG
droBia1	scf7180000296986:30713-30919 -		ACATATTCTTGATCCGGATCACTAGCCGAGTCGATCTAGCCATGTTCGTCCA--TCTGTTT-----------------------------------------------------GTGTT--CT----------------------------TAATATCAATACCCG---ATGAAGGTGGCGCTAGCTAGGAAAAGTATGCGCTAGATGGC----GAGAG-----------------------------------------------------------CA----------------------------------------------CAG---------------------------------CT--GAGTAACGGGTA-----TCAT-TAGGTCGATT-GAATCGTCTGTAGCGTTGTTCTCTTGTTGTTTT-TTTAAAG--------------------------------------------------TG----TGT-------------------------------------------------------TC
droTak1	scf7180000414189:4050-4256 +		ATATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCGTCTG--TCCGTAT-----------------------------------------------------GAA---------------------------------------------------------CGCTGAGATCTC-GAAAACTACACACAAAAAAA------------TTTGCTT---------GGT----------------------------------------------------AAAATTGACCAACAA----AGATAG---TTAC-------GTAACTATTTAAATAGTAACGTGTATTTTGTTTTT--GCTTTGGGTTTG--------------------------------TGTCTT--------------------------------------TGCTAATTGTGTGTATT------------------TTG----TTG-------------------------------------------------------TT
droEug1	scf7180000409142:27276-27433 -		ATATATTCTTGATCAGGATCAAAAGCGAAGTCAATTGAGCCATGTCCGTCGG--TCCGTCC-----------------------------------------------------GACTG--TCCGACTGTGAA--TT-------------------------TCCACTAGCAA-AATAATA------------------TTT-----------TAAAATTTTGTAAAA------------------------------------------------------------------------------------------------------------------C------------------------AATAACGGGTA-----TCTT-ATAGTCGCGG-CACTCGACTATAGCGTT-------------------------------------------------------------------------------------------------------------------------------------------T
dm3	chr2R:1609735-1609934 -		ATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTAGCCAAGTCCGTCAG--TGCGTAT-----------------------------------------------------GAA---------------------------------------------------------CGTCGAGATCTC-AGGAACTATAAAAGCTAGAACGC---CCACACTTTTGAACC--------------------------------------------------AT--------------------------------------TTTTAGAAATT---------------------------------TT--GAGTAACGAGCA-----TCTG-ATAGTCGGAA-AACTTAACTATATCATTCT-CTCTTTTT---TTTATTTAATAA-------------------------T----------------------TT----TCC-------------------------------------------------------TT
droSim2	2r:7854647-7854876 -		ATATATCCTTGATCAGGATAGCTAGCCGAGTCGATCTGGCCACGTCTGCCTG--TCCGTTCTTCTCTCC---------------------------------------------GTTTG--CCC--------GCCCATCCGT---------------------------ATAAACACCTCGATCTC-AGAAACTACAAAATCTAGAATGC---TGAGAGTAAGCATGCAGATTCTAGAG-----------ACAT-----------------------TGACAC-AG-----------------------------------------CA---------------------------------CT--GAGTAATGGGTA-----TATATATAGCCGG-G-AACTCGACTATAGAGTTCT-CTCTTGAT---TTA----------------------------------T-----------------------C----TTC-------------------------------------------------------TG
droSec2	scaffold_15:1537061-1537239 +		ATATAATCTTGATAAGGATCAATAGACGAGTCGATCTGGCCATGTCCGTCTG--TCCGTAT-----------------------------------------------------GAA---------------------------------------------------------CGTCGAGATCTC-AGGAACTATAAAAGCTATAAGGT----------------------------------------ACAT-----------------------TCACTC-T------------------------------------------AG---------------------------------CT--GAGTAAAGGGTA-----TCTG-ATAGTCGGGG-AACTCGACTAAAGCATTCT-CTCTTGTT---TTG------CTA-------------------------T----------------------CC----TCT-------------------------------------------------------TT
droYak3	v2_chrUn_003:262767-262944 -		ATATATTCTTGATTAGGATCAATAGTCGAGTCGAACTGACCATGCCCGTCTG--TCCATAT-----------------------------------------------------TAA---------------------------------------------------------CGCATCGATCTC-AGGAACTATAAAAGCTCGTGTT-----TTAATTAAACATGCAGCTTTCAGAG-----------ATATGACG--------------------------------------------------------------------------------------------------------C---------------------TCA-CAAATCGCCCAATAC----TACGAAATT--------------------------------------TGAAATTTGTTTATGT--------------------------C-------------------------------------------------------TTGT
droEre2	scaffold_4929:19459026-19459251 +		ATATATTCTTGATCAGGATCAATAGCCGGGTCGATCTGGCCATGTCCGTATG--AACGTCC-----------------------------------------------------GTCTG--TCC----------------GT---------------------------ATGAACGCCTCGATCTC-AGGAACTGCAAAAGCTAGAATGG---TGAGATTAAGCATGCAGCTTCCAGAGTTTATTTTAAAATATT-------------------------------------------GCCACTAACTGCCACAG-------------------------------------------------------------------------------------------CCACACTTTTAA-AATATGTTATATT-TTTTTTTCCT-----------------------------------------------------TTATTTTAAGTTTTTCCCCAA-------------------------------------TT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

GGTTTTCCTTGATCAAGACAACAAGCTAGGTCTACCTAGGCATGTTCGTCAG--TCCGCTT-----------------------------------------------------GTC---------------------------------------------------------TGCTTCGATCTC-AGCGACCACAAAAGCTAGG-------TGAAATGTAGAAAGAAGG------T----------------------------------------GGCTT-TA-----------------------------------------CG---------------------------------TT--ATGTAAAGGGTA-----TCTC-ATAGTCGGCCACTTTCGATTAGAGCACT--------------------------------------TGTAATTTGTTTAACTT------------------TTGTCCTTTGTTCGCAGTACTTTCCGGATTCTGGCACACGCGGACGCCGCGAGGGCACCGGCTCAAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTCCGGATTCTGGCACACGCGGA.......................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCCGGATTCTGGCACACGCGGACGCCGCGAGGGCACCGGCT....	44	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTCCGGATTCTGGCACACGCG.........................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACGCGGACGCCGCGAGGGCACCGGCT....	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...............................CTACCTAGGCATGTTCGTCAG--......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCAGTACTTTCCGGATTCTGGCAC..............................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATTCTGGCACACGCGGACGCCG..................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATATATTCTTGATCAGCGCGACGAGCTGAGTCGATATAGCCCTGTCACTGCAGCGCAGCCTA-AGCGCAGTCGCTGCTTACTGCGCAGTTAATAGAGCGCAGGCTTATGCGTGTGTGTGGAAG--CAT----GTGTAT--GTATGTGTGCATAGA---------------------------------AGAAGT-------GCAGAATGA---TTAGAA---------------------------------------------------------------------------------------------------------------------------TAACAGCTTG------------GAGGGCTCAGGGTA-----TCTC-CTAGTCGAGCAATCTCGACTGGAGCCTTCT-TACTTGTTTCTTT-TTTTTTTTGTTTGCCTGGACTTTTCGAATGTTGGGGGC--GGGGCGGTGGCACTCACGCCC----------------------------------------------------------ACAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................................................................................TATGTGTGCATAGA---------------------------------AGAAGT-------GCA................................................................................................................................................................................................................................................................................................................................................................	23	20	0.70	14	0	14	0	0	0	0
.............................................................................................................................................TATGTGTGCATAGA---------------------------------AGAAGT-------G..................................................................................................................................................................................................................................................................................................................................................................	21	20	0.70	14	14	0	0	0	0	0
.............................................................................................................................................TATGTGTGCATAGA---------------------------------AGAAGT-------GC.................................................................................................................................................................................................................................................................................................................................................................	22	20	0.55	11	0	0	0	0	11	0
..............................................................................................................................................................................................AAGT-------GCAGAATGA---TTAGAA---------------------------------------------------------------------------------------------------------------------------TAACAGC...............................................................................................................................................................................................................	26	3	0.33	1	1	0	0	0	0	0
.........................CTGAGTCGATATAGCCCTGTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	1	0	0	0	0	0
..............................................................................................................................................ATGTGTGCATAGA---------------------------------AGAAGT-------GCAGA..............................................................................................................................................................................................................................................................................................................................................................	24	20	0.20	4	4	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................AGCAATCTCGACTGGAGCCTTC...........................................................................................................................................	22	15	0.07	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................CTTG------------GAGGGCTCAGGGTA-----TCT..........................................................................................................................................................................	21	17	0.06	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................CTTG------------GAGGGCTCAGGGTA-----TCTC-C.......................................................................................................................................................................	23	17	0.06	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGGTA-----TCTC-CTAGTCGAGC..............................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0
............................................................................................................................................GTATGTGTGCATAGA---------------------------------AGAAGT-------GC.................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
.......................................................................................................................................TAT--GTATGTGTGCATAGA---------------------------------AGAAGT-------GCA................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
........................................................................................................................................AT--GTATGTGTGCATAGA---------------------------------AGAAGT-------GCA................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0

droGri2

ATATATTCTTGATCACCATTGAAAGCCGAGACGATTTAGCCATGTTTGTCTG--TCTGTCC-----------------------------------------------------GCAAG--TCT--------GAATTTCTCT---------------------------AGGCTCACGCCGATCTC-AGAAGCTTTAAGTAGC----------AGAAATTTTGAATAAAAG------T----------------------------------------AACTTG--------------------------------------------------------------------------------GTTACAT-AATCTATCTAATCTA-ATAG-----CTCTCTTGACTAGAGATTTCT-TACTTG---------------------------------------------------------------------------------------------------------------------------------TT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

ATATATTCTTGATCAGCATGACGAGACGAGTTTAAATAGCCATGTCCGTCCG--TCCGTCT-----------------------------------------------------GTCCG--TCT----GTCTG--GA-------------------------TCAAC--G---------CAAACTC-CTAGACCGTTAGAGCTACAGAGAAATTGAAATTTTGCATGTAGGCTTGTATG-----------TACTGCAGGGGTTGTATATCTCGGATT---------TAGCCGGATCGGACCACTATTTTATATAG-----------------------------------------------------------------------------------------------TGACTTT----------------TCTCAATA--------------------------A----------------------CT----TTG-------------------------------------------------------TT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................ATAGCCATGTCCGTCCG--T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	3	0
......................................................TCCGTCT-----------------------------------------------------GTCCG--TCT----GTCTG--G....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	16	0.13	2	0	2	0	0	0
................................TAAATAGCCATGTCCGTCCG--TCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	1	0	1	0
...............................TTAAATAGCCATGTCCGTCCG--TCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	2	0
...............................TTAAATAGCCATGTCCGTCCG--TCCGTCT-----------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	10	0.10	1	0	0	0	1	0
................................TAAATAGCCATGTCCGTCCG--TCCGTCT-----------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	10	0.10	1	0	1	0	0	0
.........................................................................................................................................................................................................................................TGTATG-----------TACTGCAGGGGTTGTATAT...............................................................................................................................................................................................................................................................................................	25	11	0.09	1	0	0	0	1	0
...............................................................................................................................................................................................................................CATGTAGGCTTGTATG-----------TACTG.............................................................................................................................................................................................................................................................................................................	21	13	0.08	1	0	1	0	0	0
............................................................................................................................................................................................................................................ATG-----------TACTGCAGGGGTTGT...................................................................................................................................................................................................................................................................................................	18	15	0.07	1	0	0	1	0	0
................................................................................................................................................................................................................................ATGTAGGCTTGTATG-----------TACTGC............................................................................................................................................................................................................................................................................................................	21	17	0.06	1	0	1	0	0	0
.......CTTGATCAGCATGACGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0
......TCTTGATCAGCATGACGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
.............................GTTTAAATAGCCATGTCCGTCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
...........................GAGTTTAAATAGCCATGTCCGTCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................ACTGCAGGGGTTGTATATCTC............................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0

dp5

ATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGACTGTATG--TCTGTCC-----------------------------------------------------GTCCG--TC---------------------------------------------------CGCCTCTAGCTC-AGAGACTATAAGAGCTAGAGTTA---CGAAATTTTATATCTAGACTTCTGTG-----------ATATGTCA--------------------------------------------------------------------------------------------------------CT--GTTTCAAGTATA-----TTTC-ATAAC-------ATCC--------------------------------------------------------------------------------------CA----C-------------------------------------------------------TTTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............CAGCATCAATAGCCGAGTCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	1.85	37	0	37	0	0	0	0	0	0	0	0
.TATATTCTTGATCAGCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	1.55	31	0	31	0	0	0	0	0	0	0	0
........TTGATCAGCATCAATAGCCGAGTCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	1.45	29	0	0	0	0	0	0	0	0	29	0
...........................................................................................................................................................................................................................................................................................................................................................................T--GTTTCAAGTATA-----TTTC-ATAAC-------ATCC--------------------------------------------------------------------------------------..................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................CTATAAGAGCTAGAGTTA---C......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................TGAGCCATGACTGTATG--TCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
........TTGATCAGCATCAATAGCCGAGTCGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.55	11	0	0	0	0	0	0	0	0	11	0
ATATATTCTTGATCAGCATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.20	4	0	0	0	0	0	0	4	0	0	0
...........................GAGTCGATTGAGCCATGACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0	0	0	0	0	0
............................AGTCGATTGAGCCATGACTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.....................ATAGCCGAGTCGATTGAGCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	3	0	0	0
...............................................................................................................................................................................................................................TATCTAGACTTCTGTG-----------ATATGTCA--------------------------------------------------------------------------------------------------------CT--G.............................................................................................................................................................................................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GACTTCTGTG-----------ATATGTCA--------------------------------------------------------------------------------------------------------CT--GTT...........................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.................ATCAATAGCCGAGTCGATTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................ATCTAGACTTCTGTG-----------ATATGT............................................................................................................................................................................................................................................................................................................	21	14	0.07	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................AGACTATAAGAGCTAGAGT............................................................................................................................................................................................................................................................................................................................................................	19	14	0.07	1	1	0	0	0	0	0	0	0	0	0
..ATATTCTTGATCAGCATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0	0	0	0	0	0
........TTGATCAGCATCAATAGCCGAGTCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.................ATCAATAGCCGAGTCGATTGAGCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0
........TTGATCAGCATCAATAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0
...............GCATCAATAGCCGAGTCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........TTGATCAGCATCAATAGCCGAGTCGATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................CTTCTGTG-----------ATATGTCA--------------------------------------------------------------------------------------------------------CT--GTT...........................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0	0	0	0
........TTGATCAGCATCAATAGCCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................C-AGAGACTATAAGAGCTAGA..............................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TC-AGAGACTATAAGAGCTAGA..............................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................CTTCTGTG-----------ATATGTCA--------------------------------------------------------------------------------------------------------CT--GT............................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..ATATTCTTGATCAGCATCAATAGCCGAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	1	0	0	0

droPer2

ATATATTCCTGATCAGCATCAATAGCCGAGTCGATATAGCCGTGTCTGTCTG--TCCGTCT-----------------------------------------------------G-----------------------------------------------------------------GTTCTC-ATAGACTATACAAGCTAAAGCAA---TGAAATTTTGGATCCAAACTCCTGTG-----------ATGTCACA--------------------------------------------------------------------------------------------------------TT--GAATCAATTGTA-----TTTC-AAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................AGCCGTGTCTGTCTG--TCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	15	0.07	1	0	0	1	0	0	0

droAna3

ATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTG--TCTGTCT-----------------------------------------------------GTCTG--TT---------------------------------------TCTAC--GCAA-ACTAGTC--------------------------TTA---T-----GTACAAAAAA------------------------TTATG------------------------------TACAAATCGGCCGACTATATCCTATAGCTGTCAT-------AGAACTATCG----------------------------------------------------------G-AATTGG----------------------------------------------------------CATAACTTTG-----------------GT----G-------------------------------------------------------TTTT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................................................................................................................................................................................................................................................................................................CTATCG----------------------------------------------------------G-AATTGG----------------------------------------------------------CATAACTTTG-----------------GT----G-------------------------------------------------------....	26	6	0.67	4	0	4	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................CTATCG----------------------------------------------------------G-AATTGG----------------------------------------------------------CATAACTTTG-----------------GT----............................................................	25	7	0.57	4	0	4	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................CTATCG----------------------------------------------------------G-AATTGG----------------------------------------------------------CATAACTTTG-----------------GT----G-------------------------------------------------------T...	27	6	0.17	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................CTATCG----------------------------------------------------------G-AATTGG----------------------------------------------------------CATAACTT.....................................................................................	21	13	0.15	2	0	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................TCG----------------------------------------------------------G-AATTGG----------------------------------------------------------CATAACTTTG-----------------G.................................................................	21	20	0.15	3	3	0	0	0	0	0
........................CCTGAGTCGATATGAGCATGTCCGTCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	3
.........................................................................................................................................................................................................................................................................................................................AGCTGTCAT-------AGAACTATCG----------------------------------------------------------G-AATTGG----------------------------------------------------------.............................................................................................	26	8	0.13	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................TATATCCTATAGCTGTCAT-------AGAACTATC..........................................................................................................................................................................................................................	28	20	0.10	2	0	0	2	0	0	0
.............................................................................................................................................................................................................................................................................................................................................CTATCG----------------------------------------------------------G-AATTGG----------------------------------------------------------CATAACTTTG-----------------GC----............................................................	25	18	0.06	1	0	1	0	0	0	0
......................CTCCTGAGTCGATATGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
..............................TCGATATGAGCATGTCCGTCTG--TCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
....................................TGAGCATGTCCGTCTG--TCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0
....................................TGAGCATGTCCGTCTG--TCTGTCT-----------------------------------------------------GT........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.......................TCCTGAGTCGATATGAGCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0

droBip1

ATATTTTCTTGATCAGGATCACCTCCTGAGTTGATATAAGCAAGTCCGTCTG--TCCGTCT-----------------------------------------------------GTCTG--AC-------------------------------------------------------CGTCTGTC-TGTTTCTACGCAAACTAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAG-TA-----------------------------------------------------------------------------------------------TAT-------------------------------------------------------AA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GTAAGTGATGCCTGAAAATCAGCTTCCGGATTGGAGA---CTCGTTTACGCT--TTCGTTA------------------------------------------------------TTTA--CT-------------------------------------------------------TTTTCCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGTACTTCCCGGACTCGGGTACAAGGGGAAGACGGGAGGGCACTGGATCCAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCTTTTTCCACCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGCAGTATTTTCCGGATTCAGGGACGCGAGGACGACGCGAAGGAACCGGTTCGAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATATATTCTTGATCAGCATCACTATGCGAGTCGATCTAGCCATGTCCGTCGG--TCCGTCC-----------------------------------------------------GTT---------------------------------------------------------TTTTTCTATTGC-AGGTAGTATATAAGTCGGAAC------------------------------------------------------------------------------AAGCCGGATCGGACGACTATAGCATATAGCTCCCAT-------GG---------------------------------------GAGCTTCA-----TGTT-ATAGTCGTCCGATTTTGATTAAATT------------------------------TAAACCGTAATTCTGAAATATTTAACCA------------------TTACTATATG-------------------------------------------------------TT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATATATTCTTGTTCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTGAT-CAAAGTTTCTATCTCC------AT-------------------------------------CTC---------------------------------------------------------------CCTCGC-ACT----------------------------------------------------------------------------------------CCCTT-T------------------------------------------AC---------------------------------CT--GAGTAACGGGTA-----TCTG-ATAGTCGGGG-CACCCGACTATAGCGTTCT-CTCTTGTT---TTGTTTTAGTT-------------------------------------------------------ACT-------------------------------------------------------TG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACATATTCTTGATCCGGATCACTAGCCGAGTCGATCTAGCCATGTTCGTCCA--TCTGTTT-----------------------------------------------------GTGTT--CT----------------------------TAATATCAATACCCG---ATGAAGGTGGCGCTAGCTAGGAAAAGTATGCGCTAGATGGC----GAGAG-----------------------------------------------------------CA----------------------------------------------CAG---------------------------------CT--GAGTAACGGGTA-----TCAT-TAGGTCGATT-GAATCGTCTGTAGCGTTGTTCTCTTGTTGTTTT-TTTAAAG--------------------------------------------------TG----TGT-------------------------------------------------------TC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCGTCTG--TCCGTAT-----------------------------------------------------GAA---------------------------------------------------------CGCTGAGATCTC-GAAAACTACACACAAAAAAA------------TTTGCTT---------GGT----------------------------------------------------AAAATTGACCAACAA----AGATAG---TTAC-------GTAACTATTTAAATAGTAACGTGTATTTTGTTTTT--GCTTTGGGTTTG--------------------------------TGTCTT--------------------------------------TGCTAATTGTGTGTATT------------------TTG----TTG-------------------------------------------------------TT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ATATATTCTTGATCAGGATCAAAAGCGAAGTCAATTGAGCCATGTCCGTCGG--TCCGTCC-----------------------------------------------------GACTG--TCCGACTGTGAA--TT-------------------------TCCACTAGCAA-AATAATA------------------TTT-----------TAAAATTTTGTAAAA------------------------------------------------------------------------------------------------------------------C------------------------AATAACGGGTA-----TCTT-ATAGTCGCGG-CACTCGACTATAGCGTT-------------------------------------------------------------------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total
No Reads

dm3

ATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTAGCCAAGTCCGTCAG--TGCGTAT-----------------------------------------------------GAA---------------------------------------------------------CGTCGAGATCTC-AGGAACTATAAAAGCTAGAACGC---CCACACTTTTGAACC--------------------------------------------------AT--------------------------------------TTTTAGAAATT---------------------------------TT--GAGTAACGAGCA-----TCTG-ATAGTCGGAA-AACTTAACTATATCATTCT-CTCTTTTT---TTTATTTAATAA-------------------------T----------------------TT----TCC-------------------------------------------------------TT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................GTCAG--TGCGTAT-----------------------------------------------------GAA---------------------------------------------------------CGTCGA........................................................................................................................................................................................................................................................................................................................................................................................	21	1	132.00	132	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	93	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................TCAG--TGCGTAT-----------------------------------------------------GAA---------------------------------------------------------CGTCGAG.......................................................................................................................................................................................................................................................................................................................................................................................	21	1	129.00	129	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	23	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	61	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................................................................................................................................................................................................................................................................................................................................................G-ATAGTCGGAA-AACTTAACTAT..................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................AGTCGATCTAGCCAAGTCCGTCAG--TG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................TCAG--TGCGTAT-----------------------------------------------------GAA---------------------------------------------------------CGTCGAGATCTC-AGG..............................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................GTCAG--TGCGTAT-----------------------------------------------------GAA---------------------------------------------------------CGTC..........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................GTCAG--TGCGTAT-----------------------------------------------------GAA---------------------------------------------------------CGTCGAG.......................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................ATAGCCGAGTCGATCTAGCCAAGTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................AAGTCCGTCAG--TGCGTAT-----------------------------------------------------GAA---------------------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TCTAGCCAAGTCCGTCAG--TGCGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................G--TGCGTAT-----------------------------------------------------GAA---------------------------------------------------------CGTCGAGATCTC-AGGA.............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATATATCCTTGATCAGGATAGCTAGCCGAGTCGATCTGGCCACGTCTGCCTG--TCCGTTCTTCTCTCC---------------------------------------------GTTTG--CCC--------GCCCATCCGT---------------------------ATAAACACCTCGATCTC-AGAAACTACAAAATCTAGAATGC---TGAGAGTAAGCATGCAGATTCTAGAG-----------ACAT-----------------------TGACAC-AG-----------------------------------------CA---------------------------------CT--GAGTAATGGGTA-----TATATATAGCCGG-G-AACTCGACTATAGAGTTCT-CTCTTGAT---TTA----------------------------------T-----------------------C----TTC-------------------------------------------------------TG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................................................................................TCTC-AGAAACTACAAAATC..................................................................................................................................................................................................................................................................................................................................................................	19	2	1.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TC-AGAAACTACAAAATCT.................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CAGATTCTAGAG-----------ACA...............................................................................................................................................................................................................................................................................................................	15	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.....................CTAGCCGAGTCGATCTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TC-AGAAACTACAAAA....................................................................................................................................................................................................................................................................................................................................................................	15	12	0.17	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TCTC-AGAAACTACAAA.....................................................................................................................................................................................................................................................................................................................................................................	16	8	0.13	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................TAGCCGAGTCGATCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................................................................................................................CATGCAGATTCTAGAG-----------AC................................................................................................................................................................................................................................................................................................................	18	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TAGCCGAGTCGATCTGGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

ATATAATCTTGATAAGGATCAATAGACGAGTCGATCTGGCCATGTCCGTCTG--TCCGTAT-----------------------------------------------------GAA---------------------------------------------------------CGTCGAGATCTC-AGGAACTATAAAAGCTATAAGGT----------------------------------------ACAT-----------------------TCACTC-T------------------------------------------AG---------------------------------CT--GAGTAAAGGGTA-----TCTG-ATAGTCGGGG-AACTCGACTAAAGCATTCT-CTCTTGTT---TTG------CTA-------------------------T----------------------CC----TCT-------------------------------------------------------TT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................................................................................................................................................................................CGAGATCTC-AGGAACTATAAAAGC..................................................................................................................................................................................................................................................................................................................................................................	24	20	0.35	7	6	0	1	0
....................................TGGCCATGTCCGTCTG--TCCGTAT-----------------------------------------------------GAA---------------------------------------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................	27	10	0.10	1	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................AAGGGTA-----TCTG-ATAGTCGGGG-.............................................................................................................................................................	21	18	0.06	1	0	0	1	0
............................................TCCGTCTG--TCCGTAT-----------------------------------------------------GAA---------------------------------------------------------CGTCGAGA......................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
...........................GAGTCGATCTGGCCATGTCCGTCTG--TC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0
....................................................................................................................A---------------------------------------------------------CGTCGAGATCTC-AGGAACT..........................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0
................................................................................................................................................................................TCGAGATCTC-AGGAACTATAA......................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0
..................................................................................................................GAA---------------------------------------------------------CGTCGAGATCTC-AGGAACTATA.......................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TAAAGGGTA-----TCTG-ATAGTCGG................................................................................................................................................................	21	20	0.05	1	0	0	0	1
.......................................................CCGTAT-----------------------------------------------------GAA---------------------------------------------------------CGTCGAGATCTC-AGGA.............................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................GTA-----TCTG-ATAGTCGGGG-AACTCGA......................................................................................................................................................	24	20	0.05	1	0	0	1	0
.............................GTCGATCTGGCCATGTCCGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0
........................................CATGTCCGTCTG--TCCGTAT-----------------------------------------------------GAA---------------------------------------------------------CG............................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0

droYak3

ATATATTCTTGATTAGGATCAATAGTCGAGTCGAACTGACCATGCCCGTCTG--TCCATAT-----------------------------------------------------TAA---------------------------------------------------------CGCATCGATCTC-AGGAACTATAAAAGCTCGTGTT-----TTAATTAAACATGCAGCTTTCAGAG-----------ATATGACG--------------------------------------------------------------------------------------------------------C---------------------TCA-CAAATCGCCCAATAC----TACGAAATT--------------------------------------TGAAATTTGTTTATGT--------------------------C-------------------------------------------------------TTGT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................AA---------------------------------------------------------CGCATCGATCTC-AGGAACTATAAA.....................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........GATTAGGATCAATAGTCGAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TCTC-AGGAACTATAAAAGC..................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0

droEre2

ATATATTCTTGATCAGGATCAATAGCCGGGTCGATCTGGCCATGTCCGTATG--AACGTCC-----------------------------------------------------GTCTG--TCC----------------GT---------------------------ATGAACGCCTCGATCTC-AGGAACTGCAAAAGCTAGAATGG---TGAGATTAAGCATGCAGCTTCCAGAGTTTATTTTAAAATATT-------------------------------------------GCCACTAACTGCCACAG-------------------------------------------------------------------------------------------CCACACTTTTAA-AATATGTTATATT-TTTTTTTCCT-----------------------------------------------------TTATTTTAAGTTTTTCCCCAA-------------------------------------TT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_19352

scaffold_13049:10331262-10331412 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads