ID:

dvi_1932

 Coordinate:

scaffold_12726:1391208-1391358 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.6 -9.2 -8.9

Flybase annnotation

CDS [Dvir\GJ15339-cds]; exon [dvir_GLEANR_15654:8]; intron [Dvir\GJ15339-in]

Repeatable elements

NameClassFamilyStrand
DMR_DVUnknownUnknown-
mature
  1. dvi_23733  scaffold_270:226-245 +
  2. scaffold_1047:624-643 +
  3. scaffold_9658:124-143 +
  4. dvi_23801  scaffold_10617:574-593 +
  5. scaffold_11162:391-410 +
  6. scaffold_12341:515-534 +
  7. scaffold_12341:947-966 +
  8. dvi_1932  scaffold_12726:1391262-1391281 +
  9. scaffold_12822:727189-727208 +
  10. scaffold_12822:1384461-1384480 +
  11. scaffold_12822:4006306-4006325 +
  12. scaffold_12875:14117020-14117039 +
  13. dvi_22758  scaffold_12875:14527327-14527346 +
  14. scaffold_12928:3137588-3137607 +
  15. scaffold_12928:3137768-3137787 +
  16. scaffold_12928:3141481-3141500 +
  17. scaffold_12928:3141589-3141608 +
  18. scaffold_12928:3145014-3145033 +
  19. scaffold_12970:8312843-8312862 +
  20. dvi_24047  scaffold_12970:8455519-8455538 +
  21. scaffold_418:1048-1067 +
  22. dvi_22863  scaffold_1047:446-465 +
  23. dvi_22863  scaffold_1047:518-537 +
  24. scaffold_1054:1253-1272 +
  25. scaffold_9589:3390-3409 +
  26. scaffold_12822:1383381-1383400 +
  27. scaffold_12822:1863520-1863539 +
  28. scaffold_12822:3777300-3777319 +
  29. dvi_23424  scaffold_12875:10934899-10934918 +
  30. scaffold_12875:10989287-10989306 +
  31. scaffold_12875:10990543-10990562 +
  32. scaffold_12875:13238889-13238908 +
  33. dvi_22653  scaffold_12875:14093064-14093083 +
  34. scaffold_12928:3121449-3121468 +
  35. scaffold_12928:3142948-3142967 +
  36. scaffold_12928:3143020-3143039 +
  37. scaffold_12928:3145281-3145300 +
  38. scaffold_12928:3147201-3147220 +
  39. scaffold_12932:1098364-1098383 +
  40. scaffold_12970:8470760-8470779 +
star
  1. scaffold_305:198-218 +
  2. scaffold_305:1536-1556 +
  3. scaffold_1054:320-340 +
  4. scaffold_2034:1446-1466 +
  5. dvi_23915  scaffold_11871:687-707 +
  6. dvi_1932  scaffold_12726:1391224-1391244 +
  7. scaffold_12855:3764090-3764110 +
  8. scaffold_12855:3764342-3764362 +
  9. scaffold_12855:3764414-3764434 +
  10. scaffold_12855:3764522-3764542 +
  11. scaffold_12855:3765170-3765190 +
  12. scaffold_12855:3765422-3765442 +
  13. scaffold_12855:3765854-3765874 +
  14. scaffold_12875:11365464-11365484 +
  15. scaffold_12875:13211846-13211866 +
  16. scaffold_12875:13212205-13212225 +
  17. scaffold_12963:9463633-9463653 +
  18. scaffold_12970:7772583-7772603 +
  19. scaffold_12970:8313021-8313041 +
  20. scaffold_13047:1752516-1752536 +
  21. scaffold_4885:888-908 +
  22. dvi_23915  scaffold_11871:810-830 +
  23. scaffold_12726:1395031-1395051 +
  24. scaffold_12855:3765674-3765694 +
  25. scaffold_12875:8290631-8290651 +
  26. scaffold_12875:10990433-10990453 +
  27. scaffold_12875:10990711-10990731 +
  28. scaffold_12875:13211270-13211290 +
  29. scaffold_12875:13212997-13213017 +
  30. scaffold_12875:13213357-13213377 +
  31. scaffold_12928:3850673-3850693 +
  32. scaffold_12970:5319913-5319933 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------###############-----------------------------------
GACATAACTCCTCGCGGAGATATGACGTTCCAAAACGACATAACTCCGCGCGGAAATATGACGTTCCAAAACGACATAACTCCTCGCGCAGATATGACGTTCCAAAACGACATAACTCCCCGCGGAGATATGACCTTTCAAATCACCACGTTTTTTTGCGAAAATCGAATCTTTTTCGATGATTTTTTTTTAATATCTCAGGTACATAATGTCTGATTTTAAAATGTTATACCTTTTTGAATGCGTATGGA
******************************************************************..................((((.((.((((.((((....)))).)))).))...))))******************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060688
160_ovaries_total
 M047
female body
 SRR060676
9xArg_ovaries_total
 SRR060674
9x140_ovaries_total
 GSM1528803
follicle cells		 M027
male body		 SRR060677
Argx9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060654
160x9_ovaries_total
 SRR060658
140_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060683
160_testes_total
 V116
male body
...............................AAAACGACATAACTCCGCGCG....................................................................................................................................................................................................... 21 0 20 2.15 43 43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................AAACGACATAACTCCCCGCG............................................................................................................................... 20 0 20 0.25 5 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TGTTATACCTTTTTGAATGCGTATGGA 27 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................ATAACTCCCCGCGGAGATATG....................................................................................................................... 21 0 20 0.25 5 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................AAACGACATAACTCCCCGCGGA............................................................................................................................. 22 0 20 0.20 4 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATGACGTTCCAAAACGACATAACTCCC................................................................................................................................... 27 0 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................AACGACATAACTCCGCGCGGAAA................................................................................................................................................................................................... 23 0 20 0.15 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0
..................................................................CAAAACGACATAACTCCTCGC.................................................................................................................................................................... 21 0 20 0.15 3 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................TTATACCTTTTTGAATGCGTA.... 21 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TAATGTCTGATTTTAAAAT.......................... 19 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TTATACCTTTTTGAATGCGTATGGG 25 1 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTTAAAATGTTATACCTTTTTGAATGC....... 27 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATAATGTCTGATTTTAAAATGT........................ 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................AAACGACATAACTCCGCGCGGAA.................................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................ACGTTCCAAAACGACATAACTCCCCGC................................................................................................................................ 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AAAATGTTATACCTTTTTGAATGCG...... 25 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................AACGACATAACTCCCCGCGGA............................................................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................ACGACATAACTCCCCGCGGAGATAT........................................................................................................................ 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................TTTTCGATGATTTTTTTTTAATAT....................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................AACGACATAACTCCGCGCGGAA.................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CGTTTTTTTGCGAAAATCGAA.................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................GCAGATATGACGTTCCAAAACGACA........................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TAAAATGGTATACCTTTTTGAATGCG...... 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TAACTCCCCGCGGAGATATGACC.................................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
....TAACTCCTCGCGGAGATATGA.................................................................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................GACGTTCCAAAACGACATAACTCCC................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................CGACATAACTCCGCGCGGA..................................................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................CAAAACGACATAACTCCCCGCG............................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................TAAAATGTTATACCTTTTTGAATGCG...... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TCCAAAACGACATAACTCCTCGC.................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................GCAGATATGACGTTCCAGAACGAC............................................................................................................................................ 24 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...ATAACTCCTCGCGGAGATATG................................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTGTATTGAGGAGCGCCTCTATACTGCAAGGTTTTGCTGTATTGAGGCGCGCCTTTATACTGCAAGGTTTTGCTGTATTGAGGAGCGCGTCTATACTGCAAGGTTTTGCTGTATTGAGGGGCGCCTCTATACTGGAAAGTTTAGTGGTGCAAAAAAACGCTTTTAGCTTAGAAAAAGCTACTAAAAAAAAATTATAGAGTCCATGTATTACAGACTAAAATTTTACAATATGGAAAAACTTACGCATACCT
*******************************************************************************************************************************..................((((.((.((((.((((....)))).)))).))...))))****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060682
9x140_0-2h_embryos_total
 SRR060654
160x9_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060657
140_testes_total
 SRR060674
9x140_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR1106729
mixed whole adult body
 M061
embryo
 SRR060675
140x9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060680
 9xArg_testes_total
 SRR060681
Argx9_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR060689
160x9_testes_total
 V047
embryo
 V116
male body
..............................................................................................................................................................................................ATTAAAGAGTCCTTGCATTAC........................................ 21 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AAAAAACTTTTTGAGTCCATGT............................................. 22 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GTATTGAGGGGCGCCTCTAT......................................................................................................................... 20 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GTATTGAGGGGCGCCTCTATACT...................................................................................................................... 23 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AAAAAAGCAAAGAGTCCATGT............................................. 21 3 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AGAGTCCAAGTAGTAC........................................ 16 2 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
...................................GCTGTATTGAGGCGCGCCTTTAT................................................................................................................................................................................................. 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................CCTCTATACTGGAAAGTTTAG........................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
CTGTATTGAGGAGCGCCTCTATACT.................................................................................................................................................................................................................................. 25 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TGAGGCGCGCCTTTATACTGC............................................................................................................................................................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................TTAGTGGTGCAAAAAAACGCTTTTAG..................................................................................... 26 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TGGTGCAAAAAAACGCTTTTAGCTT.................................................................................. 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....ATTGAGGAGCGCCTCTATACT.................................................................................................................................................................................................................................. 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CCTCTATACTGGGAAGTTTAG........................................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................CGCGCCTTTATACTGCAAGGT....................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTTAGTGGTGCAAAAAAAC............................................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................GCTGTATTGAGGCGCGCCTTT................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................GTTTAGTGGTGCAAAAAAACGCTTTT....................................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................GCTGTATTGAGGCGCGCCTTTA.................................................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................GCGCCTTTATACTGCAAGGTT...................................................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CTGGTGCAAAAAAACGCTTTTA...................................................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................GCGCCTTTATACTGCAAGGTTT..................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................CGCGCCTTTATGCTGCAAGGT....................................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGCTGTATTGAGGCGCGCCTTT................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................GCCTCTATACTGGAAAGTTTCG........................................................................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TCTATACTGCAAGGTTTTGC.............................................................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.....TTGAGGAGCGCCTCTATACTGCAAGG............................................................................................................................................................................................................................ 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12726:1391158-1391408 + dvi_1932 GACATAACTCCTCGCGGAGATA-------------------------------------------------------------------TGACGTTCCAAAACGACATAACTCCGCGCGGAAATATGACGTTCCAAAACGACATAACTCCTCGCGCAGAT--------------------------------------------ATGACGTTCCAAAACGACATAAC-------TCCCCGCGGAGAT----ATGACCTTT----------CAAATCACC----------ACGTTTTTTTGCGAAAATCGAATCTTTTT---CGATGATTTTTTTTTAATATCTCAGGT---------------------------------------------------------------------------ACATAAT----------------------GTCTGATTTTAAA-----------ATGT---TATACCTTTTT-GAATGCGTATGGA
droWil2 scf2_1100000006560:792-1006 - GACATATCTCCGCC-G-AC---------------------ATATCTCCGCCGTTAGAAAAACGACATATCTCCGC-----GCGGAGATATGTCGTTCTGAAACGACATAATTTCGGGCGGAGATATGTCGTTCTGAAACGACATAATTTCGCGCGGAGATATGTCGTTTTTTTAACGGCGGAGAT-------------------ATGACGTTTTGAAACGACATATC-------TCCGCGCAAA------------------------------TCACCGGCGAT----------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------A------------TATAATAATA---AA-----------------------
dp5 Unknown_group_26:24122-24298 - ATCATAGCTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGACACGGGGGAAATATGT-----CGTCGGAGATATGACGCTATGCCAAAACGCTTC-------CTTCTGGA------CGTTACACA---------CATCCA---------------------TTTTCAGCAAAAATCTAATATACTACTATACTAATTTTTA----GTATC-------------------------------------------------------------------------------------------G-----------------------ATTATAAAAACTTTATAATATTA---TA-----------------------
droPer2 scaffold_11:782858-783053 + GACATACCTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTCTC------------------------------------AAAACGTCATAACTCCGCGCGGAGATATGTCGTTTGTGACATGGCGGAGAT-------------------ATGTCGTTTCGAAACGACTTAAG-------TCCGCCAGAAAAT----A-----ATTAACTAAT---------------------------TTC----------------------------------------G---------------------------CATGTAAAATACACTTATATTT-TTTTGACAGCATTTCATTTTATA----------------------------------------------------A-----------------CATGATTTTAT----------TGAAAT
droKik1 scf7180000302795:4101-4329 + GAAATATCTCCGCGCGGAGTTA-------------------------------------------------------------------TGTCGTTTTCAAGCGACATATCTTCGCGCGGAGTTATGTCACTTTAAAACGACATAGCTCCGCGCCGAGATATGTCGTTTCTAGTTCGGCGGAGAT-------------------ATGTCGCTTTAAAGCGACATAAC-------TCCGCGCGAAAAT----AC--------------------------AGTGAC-------------------------------------------------------------GT---------------------------------------------------------------------------ACTTAAT----TTGTGGCACAGTTAGCATGTCTGACTTTGGA-----------ACCC---TTTTTCTCCATTA--AACATAGCAA
droEle1 scf7180000489519:6948-7101 - GCCATAAGTCCGCC-GTAGAAA------------------------------------AAACGACATAATTTCGGTAGCCGCAGAATAAA----CTGCTAAGCGACATAAGTTCGCGCGAAATTATGTCGTTTTAAAACTATT-----T-------------------------GTGCCGGACTT-------------------ATGTCGTTTTAAAGTGACCTAAT-------TTCGCGGGGAAAA----AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------A--------------------------------------------------
droRho1 scf7180000759646:342-551 - GACATATCTCCGCGGGGAGATA-------------------------------------------------------------------TGACGTTTAAAAACGACATATCTCCGCTCGAAAATATTTCGTT-TTAAACGACATATCTCCGCGCGGAGATATGTCGTTTGTAGAAGGGCGGAGTT-------------------ATGTCGCTTTAAAACGACATATC-------TCCGCGCGAAGT-----------TTT----------CATAGC--T----------AC----------------------------AAAGTTGATTTTTTTTAAATATTCA-----------TATATACTCA---------------------------------------------------------------------------------------------TTTTCAA-----------ATGT----------------------------
droBia1 scf7180000301585:66902-67099 - GACATATCTCCGCT-GAAC------------------------------------AAAAAGCGAAATATTTCCGC-----GCGGAGATATGACATTTC------------------------------------AAGACGACATATCTCCGCGCGGAGTT--------------------------------------------ATGTCGCTATGAAAAAATACATC-------TCCGCCGATTTAT----A-----AGCAACTCAT---------------------------CTT--------------------------------------------------------------------CAAATAGAATAAATTTAATGTTTTTTT-----------------TAAATTAATTTCATACAGAAAGTTG-----------------------AATAGAAA-----------ATCT---TA-----------------------
droTak1 scf7180000413258:159-400 + GACATATCTCCGCGCGGAGATG-------------------------------------------------------------------TGACGTTTAAAAACCAAATATTTTCGCGCGGAGATATGTCGTTTTTAAACGACTTATCTCCGCGCGGAGATAAGGCGTTTGTAGAAGGGCGGAGCT-------------------CTGTCGTTTCAAAACGACATATC-------TCCCCGCAAATT-----------TTT----------AATAAC--T----------AC----------------------------AAAGTTGTTTTTTT----ATATGT-AGATACATATTTATATACTCA---------------------------------------------------------------------------------------------TTTTAAT-----------ATGTACATATTCTTATTC-G--TGCATGTAAA
droYak3 v2_chrUn_1994:6650-6779 - CTC----CTCCTAGCGGAGATATGTCGTTTTCAAAACGACATATCTCATCCGAAAT-----------------------------------------------------------------------------TAAAACGACATACCTCCTAGCGGAGATATGTCGTTTTCAAAACTC--AAAAA----ACTTCGGGAGGAGATATGTCGTTTTGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4690:18024751-18024944 - GACATTATTCCGCGCAGAGATA-------------------------------------------------------------------TGACGTTTC-------------------------------------ATAGGACATAACTCCGTGAGGAGATATATCGTTTTTAGATCGACGGAGAT-------------------ATGTCGCGTGGA-----CTTATGTCGTTACCCCCGGCAACAACAGGTACCACC---------CGTCCAAATTAACAACGAGCAAAATATTTTTTGGCCA----------------AACGAAAATTTTTAGTTAACAGCCCTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GACATAACTCCTCGCGGAGATA-------------------------------------------------------------------TGACGTTCCAAAACGACATAACTCCGCGCGGAAATATGACGTTCCAAAACGACATAACTCCTCGCGCAGAT--------------------------------------------ATGACGTTCCAAAACGACATAAC-------TCCCCGCGGAGAT----ATGACCTTT----------CAAATCACC----------ACGTTTTTTTGCGAAAATCGAATCTTTTT---CGATGATTTTTTTTTAATATCTCAGGT---------------------------------------------------------------------------ACATAAT----------------------GTCTGATTTTAAA-----------ATGT---TATACCTTTTT-GAATGCGTATGGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................AAAACGACATAACTCCGCGCG.....................................................................................................................................................................................................................................................................................................................................................................................................21202.15430000000000000000000000000000000000000043000000000000000000000000
.......................................................................................................................................................................................................................AAACGACATAAC-------TCCCCGCG..........................................................................................................................................................................................................................................................................20200.255005000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT---TATACCTTTTT-GAATGCGTATGGA2740.251000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................ATAAC-------TCCCCGCGGAGAT----ATG..............................................................................................................................................................................................................................................................21200.255005000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................AAACGACATAAC-------TCCCCGCGGA........................................................................................................................................................................................................................................................................22200.204400000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................ATGACGTTCCAAAACGACATAAC-------TCCC..............................................................................................................................................................................................................................................................................27200.153000000000000000000000000000000000000000000000000000000000000003
....................................................................................................AACGACATAACTCCGCGCGGAAA.................................................................................................................................................................................................................................................................................................................................................................................................23200.153000000000000000000010000011000000000000000000000000000000000000
.....................................................................................................................................CAAAACGACATAACTCCTCGC..................................................................................................................................................................................................................................................................................................................................................................21200.153002000000000000000100000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TATACCTTTTT-GAATGCGTA....21200.102000000000000000000000000200000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TAAT----------------------GTCTGATTTTAAA-----------AT..............................19200.102000000000000000000000000000000000020000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TATACCTTTTT-GAATGCGTATGGG25130.081000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAA-----------ATGT---TATACCTTTTT-GAATGC.......27200.051000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAT----------------------GTCTGATTTTAAA-----------ATGT---.........................22200.051000000001000000000000000000000000000000000000000000000000000000
...................................................................................................AAACGACATAACTCCGCGCGGAA..................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................ACGTTCCAAAACGACATAAC-------TCCCCGC...........................................................................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-----------ATGT---TATACCTTTTT-GAATGCG......25200.051000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................AACGACATAAC-------TCCCCGCGGA........................................................................................................................................................................................................................................................................21200.051000000000000000010000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................ACGACATAAC-------TCCCCGCGGAGAT----AT...............................................................................................................................................................................................................................................................25200.051000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TTTT---CGATGATTTTTTTTTAATAT.......................................................................................................................................................................24200.051000010000000000000000000000000000000000000000000000000000000000
....................................................................................................AACGACATAACTCCGCGCGGAA..................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CGTTTTTTTGCGAAAATCGAA.....................................................................................................................................................................................................21200.051000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................GCAGAT--------------------------------------------ATGACGTTCCAAAACGACA.............................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................TAAC-------TCCCCGCGGAGAT----ATGACC...........................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000000000000000000000000010
....TAACTCCTCGCGGAGATA-------------------------------------------------------------------TGA................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000001000000000000000000000000
..............................................................................................................................................................................................................GACGTTCCAAAACGACATAAC-------TCCC..............................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000000000000000000000000000001
......................................................................................................CGACATAACTCCGCGCGGA...................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................CAAAACGACATAAC-------TCCCCGCG..........................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA-----------ATGT---TATACCTTTTT-GAATGCG......26200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TCCAAAACGACATAACTCCTCGC..................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000100000000000000000000000000000000000000
...ATAACTCCTCGCGGAGATA-------------------------------------------------------------------TG.................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000100000000000000000000000000000000000
droWil2
GACATATCTCCGCC-G-AC---------------------ATATCTCCGCCGTTAGAAAAACGACATATCTCCGC-----GCGGAGATATGTCGTTCTGAAACGACATAATTTCGGGCGGAGATATGTCGTTCTGAAACGACATAATTTCGCGCGGAGATATGTCGTTTTTTTAACGGCGGAGAT-------------------ATGACGTTTTGAAACGACATATC-------TCCGCGCAAA------------------------------TCACCGGCGAT----------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------A------------TATAATAATA---AA-----------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................TGAAACGACATAATTTCGCGCGGAGA.............................................................................................................................................................................................................................................................................................................................................................26200.10202000
.........................................................................................................................................................................................................................ACGACATATC-------TCCGCGCAAA------------------------------..........................................................................................................................................................................................................................................20110.09101000
....................................................................................................................................................................CGTTTTTTTAACGGCGGAG.....................................................................................................................................................................................................................................................................................................................................19160.06100010
.....................................................................................................................................................................GTTTTTTTAACGGCGGAG.....................................................................................................................................................................................................................................................................................................................................18160.06100010
...........GCC-G-AC---------------------ATATCTCCGCCGTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................21180.06100010
....TATCTCCGCC-G-AC---------------------ATATCTCCGCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................25190.05100010
......................................................................TCCGC-----GCGGAGATATGTCGTT............................................................................................................................................................................................................................................................................................................................................................................................................................21200.05110000
...............................................................................................................................................................................................................ACGTTTTGAAACGACATATC-------TCCGCGC...........................................................................................................................................................................................................................................................................27200.05101000
...............................................................................................................................................TAATTTCGCGCGGAGATATGTCGT.....................................................................................................................................................................................................................................................................................................................................................24200.05101000
.....................................................................................................................................TGAAACGACATAATTTCGCG...................................................................................................................................................................................................................................................................................................................................................................20200.05101000
...............................................................................................................................................TAATTTCGCGCGGAGATATGTCGTTT...................................................................................................................................................................................................................................................................................................................................................26200.05100010
.....................................................................................................................................TGAAACGACATAATTTCGCGCG.................................................................................................................................................................................................................................................................................................................................................................22200.05100100
.......................................................................................................................................AAACGACATAATTTCGCGCGG................................................................................................................................................................................................................................................................................................................................................................21200.05100010
...............................................................................................................................................................................CGGCGGAGAT-------------------ATGACGTTTTGAAACGAC..............................................................................................................................................................................................................................................................................................28200.05110000
...................................................................................................................................TCTGAAACGACATAATTTCGCT...................................................................................................................................................................................................................................................................................................................................................................22200.05110000
.........................................................................................................................................ACGACATAATTTCGCGCGGAGATATGT........................................................................................................................................................................................................................................................................................................................................................27200.05100010
.......................................................................................................................GAGATATGTCGTTCTGAAACGA...............................................................................................................................................................................................................................................................................................................................................................................22200.05100010
...............G-AC---------------------ATATCTCCGCCGTTAGAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
...................................................................................GAGATATGTCGTTCTGAAACGA...................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
..........................................................AAACGACATATCTCCGC-----GCGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
...............................................................................................................................................TAATTTCGCGCGGAGATATGTCGTTTA..................................................................................................................................................................................................................................................................................................................................................27200.05100100
...........................................................................................................................................GACATAATTTCGCGCGGAGATATGT........................................................................................................................................................................................................................................................................................................................................................25200.05100010
...............................................................................................................................................TAATTTCGCGCGGAGATATGTCGTT....................................................................................................................................................................................................................................................................................................................................................25200.05101000
.......................................................................................................................................AAACGACATAATTTCGCGCGGAGAT............................................................................................................................................................................................................................................................................................................................................................25200.05101000
.............................................................................................................................................................................................................TGACGTTTTGAAACGACATATC-------TCCG..............................................................................................................................................................................................................................................................................26200.05100010
.....................................................................................GATATGTCGTTCTGAAACGACAT................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100001
.....................................................TAGAAAAACGACATATCTCCGC-----GCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
dp5
ATCATAGCTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGACACGGGGGAAATATGT-----CGTCGGAGATATGACGCTATGCCAAAACGCTTC-------CTTCTGGA------CGTTACACA---------CATCCA---------------------TTTTCAGCAAAAATCTAATATACTACTATACTAATTTTTA----GTATC-------------------------------------------------------------------------------------------G-----------------------ATTATAAAAACTTTATAATATTA---TA-----------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................A-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGACACGGGGG.......................................................................................................................................................................................................................................................................................................................................2113.0030200100000
............................................................................................................................................................................................T-----CGTCGGAGATATGACGCTATGCC...................................................................................................................................................................................................................................................................................................2472.711901720000000
...................................................................................................................................................................................................GTCGGAGATATGACGCTATGCC...................................................................................................................................................................................................................................................................................................2272.141511400000000
........................................................................................................................................................................................................................CAAAACGCTTC-------CTTCTGGA------CG..................................................................................................................................................................................................................................................................2112.0021100000000
..........................................................................................GTCGTTTG------------------------------------------------------------------------TGACACGGGGGAA.....................................................................................................................................................................................................................................................................................................................................2112.0020200000000
.........CCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................21142.002802600002000
....TAGCTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTT............................................................................................................................................................................................................................................................................................................................................................................................................................2581.631301300000000
....TAGCTCCGCGCGGAGATA-------------------------------------------------------------------TGTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................2381.1390700000020
............CGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TG................................................................................................................................................................................................................................................................................................................................................21131.08140400001900
.........................................................................................................................................................................................................GATATGACGCTATGCCAAAACGCT...........................................................................................................................................................................................................................................................................................2411.0010100000000
....................................................................................................................................................................................................................................................................................................................................TAATTTTTA----GTATC-------------------------------------------------------------------------------------------G-----------------------ATTATA.............................................2111.0010000000010
.........................................................................................TGTCGTTTG------------------------------------------------------------------------TGACACGGGGT.......................................................................................................................................................................................................................................................................................................................................2011.0010000010000
.............................................................................................................................................................................................................TGACGCTATGCCAAAACGCTT..........................................................................................................................................................................................................................................................................................2111.0010100000000
.....................A-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGACACGGGGT.......................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.................................................................................................................................................................................................................................................................................................................ATCTAATATACTACTATACTA......................................................................................................................................................................................2111.0010100000000
...............................................................................................TTG------------------------------------------------------------------------TGACACGGGGGAAATATG................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................ATATGACGCTATGCCAAAACG.............................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................TGCCAAAACGCTTC-------CTTCTGG...........................................................................................................................................................................................................................................................................2111.0010100000000
.....................A-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGACACGGGG........................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................ACACGGGGGAAATATGT-----CGT.......................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................................ATATGACGCTATGCCAAAACGT............................................................................................................................................................................................................................................................................................2211.0010100000000
.........................................................................................TGTCGTTTG------------------------------------------------------------------------TGACACGGGGG.......................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................TTTG------------------------------------------------------------------------TGACACGGGGGAAATATG................................................................................................................................................................................................................................................................................................................................2211.0010100000000
....................................................................................................................................................................................GAAATATGT-----CGTCGGAGATAT..............................................................................................................................................................................................................................................................................................................2111.0010000000010
............................................................................................CGTTTG------------------------------------------------------------------------TGACACGGGGGAA.....................................................................................................................................................................................................................................................................................................................................1911.0010000010000
..................................................................................................................................................................................GGGAAATATGT-----CGTCGGAGA.................................................................................................................................................................................................................................................................................................................2011.0010000000010
..........................................................................................................................................................................................................................................................................................................................................TTA----GTATC-------------------------------------------------------------------------------------------G-----------------------ATTATAAAAACTTTATAA.................................2711.0010000000010
....................................................................................................................................................................................GAAATATGT-----CGTCGGAGATA...............................................................................................................................................................................................................................................................................................................2011.0010000000010
..........................................................................................................................................................................................................................................................................................................................................TTA----GTATC-------------------------------------------------------------------------------------------G-----------------------ATTATAAAAACT.......................................2111.0010010000000
...................ATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGACACGGG.........................................................................................................................................................................................................................................................................................................................................2111.0010000000010
............................................................................................................................................................................................................................................................................................................................TACTATACTAATTTTTA----GTAT.......................................................................................................................................................................2111.0010100000000
....................TA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGACACGGG.........................................................................................................................................................................................................................................................................................................................................2011.0010000001000
.......................................................................................................................................................................................................................CCAAAACGCTTC-------CTTCTGGA------C...................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................CACGGGGGAAATATGT-----CGTCGT....................................................................................................................................................................................................................................................................................................................2211.0010100000000
................................................................................................................................................................................GGGGGAAATATGT-----CGTCGGAG..................................................................................................................................................................................................................................................................................................................2111.0010000001000
........TCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTT............................................................................................................................................................................................................................................................................................................................................................................................................................21141.001401200001100
............................................................................................................................................................................................................................................................................................................CAAAAATCTAATATACTACTA...........................................................................................................................................................................................2111.0010000000010
........TCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGAC..............................................................................................................................................................................................................................................................................................................................................2770.8660600000000
............................................................................................................................................................................................T-----CGTCGGAGATATGACGCTATG.....................................................................................................................................................................................................................................................................................................2270.7150400000100
............................................................................................................................................................................................T-----CGTCGGAGATATGACGCTATGC....................................................................................................................................................................................................................................................................................................2370.7150500000000
....TAGCTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................2780.6350500000000
.........................................................................................................................................................................................................................AAAACGCTTC-------CTTCTGGA------CG..................................................................................................................................................................................................................................................................2050.6030300000000
........TCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGA...............................................................................................................................................................................................................................................................................................................................................2670.5740400000000
.............GCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TG................................................................................................................................................................................................................................................................................................................................................20130.5470400000210
.......CTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................21160.5080700000100
......................................................................................................................................................................................................GGAGATATGACGCTATGCCA..................................................................................................................................................................................................................................................................................................2020.5010100000000
........................................................................................................................................................................................TATGT-----CGTCGGAGATATGACG..........................................................................................................................................................................................................................................................................................................2160.5030300000000
........TCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TG................................................................................................................................................................................................................................................................................................................................................2590.4440400000000
...............GGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TG................................................................................................................................................................................................................................................................................................................................................18140.4360000000330
..........................................................................................................................................................................................TGT-----CGTCGGAGATATGACGCTATGCCC..................................................................................................................................................................................................................................................................................................2770.4330210000000
....................................................................................................................................................................................................TCGGAGATATGACGCTATGCC...................................................................................................................................................................................................................................................................................................2170.4330300000000
........TCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGACAC............................................................................................................................................................................................................................................................................................................................................2970.4330300000000
..................................................................................................................................................................................................CGTCGGAGATATGACGCTATGCC...................................................................................................................................................................................................................................................................................................2370.4330300000000
....TAGCTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................2680.3830300000000
............CGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGACACG...........................................................................................................................................................................................................................................................................................................................................2680.3830200100000
....................TA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGACACGG..........................................................................................................................................................................................................................................................................................................................................1990.3330300000000
.................AGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGACACGG..........................................................................................................................................................................................................................................................................................................................................2290.3330000000300
.......CTCCGCGCGGAGATA-------------------------------------------------------------------TGTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................20160.3150500000000
.................................................................................................................................................................................................................................TC-------CTTCTGGA------CGTTACACA---------CATCCA---------------------TTT....................................................................................................................................................................................................................28200.3060600000000
........TCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................23140.2940310000000
.......CTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTT............................................................................................................................................................................................................................................................................................................................................................................................................................22140.2940300000100
..........................................................................................................................................................................................................................................................TTACACA---------CATCCA---------------------TTTTCAGC...............................................................................................................................................................................................................2140.2510100000000
............CGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGA...............................................................................................................................................................................................................................................................................................................................................2280.2520100000100
...ATAGCTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTT............................................................................................................................................................................................................................................................................................................................................................................................................................2680.2520200000000
....TAGCTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................2680.2520200000000
....TAGCTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................2480.2520110000000
...ATAGCTCCGCGCGGAGATA-------------------------------------------------------------------TG.................................................................................................................................................................................................................................................................................................................................................................................................................................2190.2220200000000
...................ATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGACACGG..........................................................................................................................................................................................................................................................................................................................................2090.2220100000100
.......CTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................24140.2130300000000
........................................................................................................................................................................................TATGT-----CGTCGGAGATATGACGCTA.......................................................................................................................................................................................................................................................................................................2460.1710100000000
........................................................................................................................................................................................TATGT-----CGTCGGAGATATGACGCTATGC....................................................................................................................................................................................................................................................................................................2760.1710100000000
.......................................................................................................................................................................................ATATGT-----CGTCGGAGATATGA............................................................................................................................................................................................................................................................................................................2060.1710000000010
........................................................................................................................................................................................TATGT-----CGTCGGAGATATGACGCT........................................................................................................................................................................................................................................................................................................2360.1710100000000
.......................................................................................................................................................................................ATATGT-----CGTCGGAGATATGAC...........................................................................................................................................................................................................................................................................................................2160.1710000010000
........................................................................................................................................................................................TATGT-----CGTCGGAGATATGACGCTATG.....................................................................................................................................................................................................................................................................................................2660.1710100000000
............CGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------T.................................................................................................................................................................................................................................................................................................................................................20190.1630100000200
..........................................................................................................................................................................................................................AAACGCTTC-------CTTCTGGA------CG..................................................................................................................................................................................................................................................................19200.1530300000000
...................................................................................................................................................................................................GTCGGAGATATGACGCTATGC....................................................................................................................................................................................................................................................................................................2170.1410100000000
.........CCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGA...............................................................................................................................................................................................................................................................................................................................................2570.1410100000000
..........................................................................................................................................................................................TGT-----CGTCGGAGATATGACG..........................................................................................................................................................................................................................................................................................................1970.1410100000000
....................................................................................................................................................................................................TCGGAGATATGACGCTATGC....................................................................................................................................................................................................................................................................................................2070.1410100000000
............................................................................................................................................................................................T-----CGTCGGAGATATGACGCTATGCCC..................................................................................................................................................................................................................................................................................................2570.1410010000000
............................................................................................................................................................................................T-----CGTCGGAGATATGACGCTATGCA...................................................................................................................................................................................................................................................................................................2470.1410100000000
.....................................................................................................................................................................................................CGGAGATATGACGCTATGCC...................................................................................................................................................................................................................................................................................................2070.1410100000000
..................................................................................................................................................................................................CGTCGGAGATATGACGCTATGCA...................................................................................................................................................................................................................................................................................................2370.1410100000000
...........................................................................................................................................................................................GT-----CGTCGGAGATATGACGCTATG.....................................................................................................................................................................................................................................................................................................2370.1410100000000
......................................................................................................................................................................................................GGAGATATGACGCTATGCC...................................................................................................................................................................................................................................................................................................1970.1410100000000
..........................................................................................................................................................................................TGT-----CGTCGGAGATATGACGCTATG.....................................................................................................................................................................................................................................................................................................2470.1410100000000
.........CCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................22140.1420100000100
.........CCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGAC..............................................................................................................................................................................................................................................................................................................................................2670.1410100000000
.........CCGCGCGGAGATA-------------------------------------------------------------------TGTCGTT............................................................................................................................................................................................................................................................................................................................................................................................................................20140.1420200000000
...................................................................................................................................................................................................GTCGGAGATATGACGCTATGA....................................................................................................................................................................................................................................................................................................2170.1410100000000
........TCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................22140.1420200000000
............................................................................................................................................................................................T-----CGTCGGAGATATGACGCTATGCCT..................................................................................................................................................................................................................................................................................................2570.1410100000000
..................................................................................................................................................................................................CGTCGGAGATATGACGCTATGC....................................................................................................................................................................................................................................................................................................2270.1410100000000
....TAGCTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTA............................................................................................................................................................................................................................................................................................................................................................................................................................2580.1310100000000
....TAGCTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTAA------------------------------------------------------------------------A.................................................................................................................................................................................................................................................................................................................................................2880.1310100000000
.....AGCTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTT............................................................................................................................................................................................................................................................................................................................................................................................................................2480.1310100000000
............CGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGACA.............................................................................................................................................................................................................................................................................................................................................2480.1310100000000
......GCTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................2480.1310100000000
..........CGCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGACAC............................................................................................................................................................................................................................................................................................................................................2780.1310100000000
..............CGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGAC..............................................................................................................................................................................................................................................................................................................................................2180.1310000000100
....TAGCTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGAA............................................................................................................................................................................................................................................................................................................................................................................................................................2580.1310100000000
..............CGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGACACG...........................................................................................................................................................................................................................................................................................................................................2480.1310100000000
...............GGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGACACGG..........................................................................................................................................................................................................................................................................................................................................2480.1310100000000
............CGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGACACGG..........................................................................................................................................................................................................................................................................................................................................2780.1310100000000
.............GCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGAC..............................................................................................................................................................................................................................................................................................................................................2280.1310100000000
.....AGCTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................2680.1310100000000
......GCTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................2580.1310100000000
.......CTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TG................................................................................................................................................................................................................................................................................................................................................2690.1110100000000
.........CCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TG................................................................................................................................................................................................................................................................................................................................................2490.1110100000000
....TAGCTCCGCGCGGAGATA-------------------------------------------------------------------TGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................2290.1110100000000
....TAGCTCCGCGCGGAGATA-------------------------------------------------------------------TG.................................................................................................................................................................................................................................................................................................................................................................................................................................2090.1110100000000
........TCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TGAA..............................................................................................................................................................................................................................................................................................................................................2790.1110100000000
..........CGCGCGGAGATA-------------------------------------------------------------------TGTCGTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................20180.1120200000000
....TAGCTCCGCGCGGAGATA-------------------------------------------------------------------TGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................2290.1110100000000
...........GCGCGGAGATA-------------------------------------------------------------------TGTCGTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................19190.1120200000000
...........GCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------T.................................................................................................................................................................................................................................................................................................................................................21190.1120200000000
.TCATAGCTCCGCGCGGAGATA-------------------------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................21100.1010100000000
........TCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------A.................................................................................................................................................................................................................................................................................................................................................24140.0710100000000
.........CCGCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------T.................................................................................................................................................................................................................................................................................................................................................23140.0710100000000
.........CCGCGCGGAGATA-------------------------------------------------------------------TGTCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................19160.0610000000100
.........CCGCGCGGAGATA-------------------------------------------------------------------TGTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................18160.0610000000100
.......CTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTA............................................................................................................................................................................................................................................................................................................................................................................................................................22160.0610100000000
...........GCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------TC................................................................................................................................................................................................................................................................................................................................................22190.0511000000000
............CGCGGAGATA-------------------------------------------------------------------TGTCGTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................18190.0510100000000
...........GCGCGGAGATA-------------------------------------------------------------------TGTCGTTTG------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................20190.0510100000000
...............................................................................................................................................................................................................................CTTC-------CTTCTGGA------CGTTACAC............................................................................................................................................................................................................................................................20200.0510100000000
...............................................................................................................................................................................................................................CTTC-------CTTCTGGA------CGTTACACA---------CATCCA---------------------.......................................................................................................................................................................................................................27200.0510100000000
droPer2
GACATACCTCCGCGCGGAGATA-------------------------------------------------------------------TGTCGTCTC------------------------------------AAAACGTCATAACTCCGCGCGGAGATATGTCGTTTGTGACATGGCGGAGAT-------------------ATGTCGTTTCGAAACGACTTAAG-------TCCGCCAGAAAAT----A-----ATTAACTAAT---------------------------TTC----------------------------------------G---------------------------CATGTAAAATACACTTATATTT-TTTTGACAGCATTTCATTTTATA----------------------------------------------------A-----------------CATGATTTTAT----------TGAAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................TAACTAAT---------------------------TTC----------------------------------------G---------------------------CATGTAAAATACACT................................................................................................................................27216.50330330000
...................................................................................................................................................................................................................................................................TAACTAAT---------------------------TTC----------------------------------------G---------------------------CATGTAAAATACAC.................................................................................................................................2623.006060000
..................................................................................................................................................................................................................................................................TTAACTAAT---------------------------TTC----------------------------------------G---------------------------CATGTAAAATAC...................................................................................................................................2521.002020000
....................................................................................................................................................................................................................................................................AACTAAT---------------------------TTC----------------------------------------G---------------------------CATGTAAAATACACT................................................................................................................................2621.002020000
...................................................................................................................................................................................................................................................................TAACTAAT---------------------------TTC----------------------------------------G---------------------------CATGTAAAATACACTTA..............................................................................................................................2921.002010001
........................................................................................................................................................................TGTGACATGGCGGAGAT-------------------ATG.............................................................................................................................................................................................................................................................................................................2011.001000001
..................................................................................................................................................................................................................................................................TTAACTAAT---------------------------TTC----------------------------------------G---------------------------CATGTAAAATACACT................................................................................................................................2821.002020000
...................................................................................................................................................................................................................................................................TAACTAAT---------------------------TTC----------------------------------------G---------------------------CATGTAAAATACA..................................................................................................................................2520.501010000
...................................................................................................................................................................................................................................................................TAACTAAT---------------------------TTC----------------------------------------G---------------------------CATGTAAAATACACTT...............................................................................................................................2820.501010000
...................................................................................................................................................................................................................................................................TAACTAAT---------------------------TTC----------------------------------------G---------------------------CATGTAAAATAC...................................................................................................................................2420.501010000
...................................................................................................................................................TCCGCGCGGAGATATGTCGTTTGTGA...............................................................................................................................................................................................................................................................................................................................................2640.502200000
...................................................................................................................................................................................................................................................................TAACTAAT---------------------------TTC----------------------------------------G---------------------------CATGTAAAATA....................................................................................................................................2320.501010000
........................................................................................................................................................................................................................................................................AAT---------------------------TTC----------------------------------------G---------------------------CATGTAAAATACAC.................................................................................................................................2130.331010000
...................................................................................................................................................TCCGCGCGGAGATATGTCGTTTGTGACA.............................................................................................................................................................................................................................................................................................................................................2840.251010000
....................................................................................................................................................CCGCGCGGAGATATGTCGTTTG..................................................................................................................................................................................................................................................................................................................................................2270.141000001
.......................................................................................................................................................CGCGGAGATATGTCGTTTGTG................................................................................................................................................................................................................................................................................................................................................2180.131000001
........................................................................................................................................................GCGGAGATATGTCGTTTGT.................................................................................................................................................................................................................................................................................................................................................19120.081000001
droKik1
GAAATATCTCCGCGCGGAGTTA-------------------------------------------------------------------TGTCGTTTTCAAGCGACATATCTTCGCGCGGAGTTATGTCACTTTAAAACGACATAGCTCCGCGCCGAGATATGTCGTTTCTAGTTCGGCGGAGAT-------------------ATGTCGCTTTAAAGCGACATAAC-------TCCGCGCGAAAAT----AC--------------------------AGTGAC-------------------------------------------------------------GT---------------------------------------------------------------------------ACTTAAT----TTGTGGCACAGTTAGCATGTCTGACTTTGGA-----------ACCC---TTTTTCTCCATTA--AACATAGCAASizeHit CountTotal NormTotal
No Reads
droEle1
GCCATAAGTCCGCC-GTAGAAA------------------------------------AAACGACATAATTTCGGTAGCCGCAGAATAAA----CTGCTAAGCGACATAAGTTCGCGCGAAATTATGTCGTTTTAAAACTATT-----T-------------------------GTGCCGGACTT-------------------ATGTCGTTTTAAAGTGACCTAAT-------TTCGCGGGGAAAA----AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------A--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GACATATCTCCGCGGGGAGATA-------------------------------------------------------------------TGACGTTTAAAAACGACATATCTCCGCTCGAAAATATTTCGTT-TTAAACGACATATCTCCGCGCGGAGATATGTCGTTTGTAGAAGGGCGGAGTT-------------------ATGTCGCTTTAAAACGACATATC-------TCCGCGCGAAGT-----------TTT----------CATAGC--T----------AC----------------------------AAAGTTGATTTTTTTTAAATATTCA-----------TATATACTCA---------------------------------------------------------------------------------------------TTTTCAA-----------ATGT----------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GACATATCTCCGCT-GAAC------------------------------------AAAAAGCGAAATATTTCCGC-----GCGGAGATATGACATTTC------------------------------------AAGACGACATATCTCCGCGCGGAGTT--------------------------------------------ATGTCGCTATGAAAAAATACATC-------TCCGCCGATTTAT----A-----AGCAACTCAT---------------------------CTT--------------------------------------------------------------------CAAATAGAATAAATTTAATGTTTTTTT-----------------TAAATTAATTTCATACAGAAAGTTG-----------------------AATAGAAA-----------ATCT---TA-----------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GACATATCTCCGCGCGGAGATG-------------------------------------------------------------------TGACGTTTAAAAACCAAATATTTTCGCGCGGAGATATGTCGTTTTTAAACGACTTATCTCCGCGCGGAGATAAGGCGTTTGTAGAAGGGCGGAGCT-------------------CTGTCGTTTCAAAACGACATATC-------TCCCCGCAAATT-----------TTT----------AATAAC--T----------AC----------------------------AAAGTTGTTTTTTT----ATATGT-AGATACATATTTATATACTCA---------------------------------------------------------------------------------------------TTTTAAT-----------ATGTACATATTCTTATTC-G--TGCATGTAAASizeHit CountTotal NormTotal
No Reads
droYak3
CTC----CTCCTAGCGGAGATATGTCGTTTTCAAAACGACATATCTCATCCGAAAT-----------------------------------------------------------------------------TAAAACGACATACCTCCTAGCGGAGATATGTCGTTTTCAAAACTC--AAAAA----ACTTCGGGAGGAGATATGTCGTTTTGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................TTCAAAACTC--AAAAA----ACTTCGGGAGG....................................................................................................................................................................................................................................................................................................................2611.00101000000000
.............................................TCATCCGAAAT-----------------------------------------------------------------------------TAAAACGACATACCTCC......................................................................................................................................................................................................................................................................................................................................................................2830.33100100000000
................................................TCCGAAAT-----------------------------------------------------------------------------TAAAACGACATACCTCC......................................................................................................................................................................................................................................................................................................................................................................2530.33100100000000
.........................................TATCTCATCCGAAAT-----------------------------------------------------------------------------TAAAACGACATAC..........................................................................................................................................................................................................................................................................................................................................................................2830.33101000000000
droEre2
GACATTATTCCGCGCAGAGATA-------------------------------------------------------------------TGACGTTTC-------------------------------------ATAGGACATAACTCCGTGAGGAGATATATCGTTTTTAGATCGACGGAGAT-------------------ATGTCGCGTGGA-----CTTATGTCGTTACCCCCGGCAACAACAGGTACCACC---------CGTCCAAATTAACAACGAGCAAAATATTTTTTGGCCA----------------AACGAAAATTTTTAGTTAACAGCCCTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................T-------------------ATGTCGCGTGGA-----CTTATGTCGTT....................................................................................................................................................................................................................................................................................2411.0011000000
.................................................................................................................................................................................................................................................................................ATTAACAACGAGCAAAATATTTTT...................................................................................................................................................................................................................2411.0011000000

Generated: 05/17/2015 at 04:23 AM