ID:

dvi_19316

 Coordinate:

scaffold_13049:10211633-10211783 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.8 -18.7 -18.7

Flybase annnotation

CDS [Dvir\GJ12039-cds]; exon [dvir_GLEANR_12038:3]; intron [Dvir\GJ12039-in]

Repeatable elements

NameClassFamilyStrand
(CATATA)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTAAGTCGTTTTTGGTTTATGTAGGTCAGAAAACTTATTGAAGTCAAATAATTCTTAGAAACTCGTTGCCAAAAAAGAAAAAACAAGTTTAACTCTATATATGGCCAGGTTGTTGAACTCCCCAATGCATGCATATCTATATATGTATATATATATGAATATTTAATTCCTATTGAATTGATATATGTGATTATTTACAGTCCTGGGATGCATACTTCCGCAGCAACTCGTACGTGAGCCCGCCCAATTT
**************************************************.........(((((.(((..............))).)))))...........(((...((((....))))..))).....(((((((....)))))))(((((((((....(((((((....)))))))..)))))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060667
160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060664
9_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 V053
head
 M027
male body		 M061
embryo
 SRR060669
160x9_females_carcasses_total
 M028
head
 SRR060665
9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060683
160_testes_total
 V047
embryo
 SRR060682
9x140_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060685
9xArg_0-2h_embryos_total
............................................................................................................................................................................................................TGGGATGCATACTTCCGCAGCA......................... 22 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TACTTCCGCAGCAACTCGTACG................ 22 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGCAGCAACTCGTACGTGAGCCCGCCC..... 27 0 1 3.00 3 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GCAACTCGTACGTGAGCCC......... 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CATACTTCCGCAGCAACTCGTACGTGA............. 27 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................AACTCGTACGTGAGCCCGCCCA.... 22 0 1 2.00 2 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ACTCGTACGTGAGCCCGCCC..... 20 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ACTCGTACGTGAGCCCGCC...... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CTCCTGGGATGCATACTTCCGCA............................ 23 1 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................CAGCAACTCGTACGTGAGCCC......... 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGCAGCAACTCGTACGTGAGCCC......... 23 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTCCGCAGCAACTCGTACG................ 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CCGCAGCAACTCGTACGTGAGCCCGCC...... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGCAGCAACTCGTACGTGAGCCCGCC...... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TACTTCCGCAGCAACTCGTAC................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGCAGCAACTCGTACGTGAGCC.......... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ATACTTCCGCAGCAACTCGTA.................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AGCAACTCGTACGTGAGCCCGCCCA.... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AGCAACTCGTACGTGAGCCCGCC...... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GCAACTCGTACGTGAGCCCGCCC..... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GCATACTTCCGCAGCAACTCGTAC................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CGTACGTGAGCCCGCCCAATT. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTCCGCAGCAACTCGTACGTGAGCC.......... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CCTGGGATGCATACTTCCGCAGCA......................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CTTCCGCAGCAACTCGTAC................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................ACCTCCTGGGATGCATACTTC................................ 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................GCATACTTCCGCAGCAACTCGTACGT............... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGCAGCAACTCGTACGTGAGCCCGCCCA.... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CCTCCTGGGATGCATACTTCCGCAGCA......................... 27 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGCAGCAACCCGTACGTG.............. 18 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................ACGTGAGCCCGCCCAATTT 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GCAGCAACTCGTACGTGAGC........... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GCATCTCGTACGTGAGCCCGC....... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CCGCAGCAACTCGTACGTG.............. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TCCTGGGATGCATACTTCCGCAG........................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ATACTTCCGCAGCAACTCGTACG................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GCAGCAACTCGTACGTGAGCCC......... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CCGCAGCAACTCGTACGTGAGCCC......... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TCCGCAGCAACTCGTACGTGAGCCC......... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ACTTCCGCAGCAACTCGTAC................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTCCGCAGCAAATCGTACG................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGCAGCAACTCGTACGTGAG............ 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GCATACTTCCGCAGCAACT...................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGGGATGCATACTTCCGCAGCAAC....................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CTTCCGCAGCAACTCGTACGTGAGCCC......... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ACTCGTACGTGAGCCCGCCCAAT.. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GCAGCAACTCGTACGTGAGCCCGCCCAA... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GTACGTGAGCCCGCCCAATTT 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................CTTAGAAACTCGTTGCCAAAA................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CTCCTGGGATGCATACTTCCGCAGCA......................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGGGATGCATACTTCCGCAGCAACT...................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ACTCGTACGTGAGCCCGCCCA.... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AACTCGTACGTGAGCCCGCC...... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GCAGCAACTCGTACGTGAGCCCGCCC..... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGATGCATACTTCCGCAGCAACTC..................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CTGGGATGCATACTTCCGCA............................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TCTATCCATGGCCAGGTTG.......................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................TATATGAATATTTGATCCC................................................................................ 19 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................TGAATTGATATGTGTGTGTATTT...................................................... 23 3 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TTGATAGGTGTGATTATGTA..................................................... 20 3 19 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TCTATCCATGGCCAGGATG.......................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AAATTCAGCAAAAACCAAATACATCCAGTCTTTTGAATAACTTCAGTTTATTAAGAATCTTTGAGCAACGGTTTTTTCTTTTTTGTTCAAATTGAGATATATACCGGTCCAACAACTTGAGGGGTTACGTACGTATAGATATATACATATATATATACTTATAAATTAAGGATAACTTAACTATATACACTAATAAATGTCAGGACCCTACGTATGAAGGCGTCGTTGAGCATGCACTCGGGCGGGTTAAA
**************************************************.........(((((.(((..............))).)))))...........(((...((((....))))..))).....(((((((....)))))))(((((((((....(((((((....)))))))..)))))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060668
160x9_males_carcasses_total
 SRR060675
140x9_ovaries_total
 M027
male body		 V053
head
..............................................TTTAATAAGACCCTTTGAGCA........................................................................................................................................................................................ 21 3 2 1.00 2 1 1 0 0
...................................................................................................TATAGCGGTACAAGAACTTG.................................................................................................................................... 20 3 8 0.13 1 0 0 1 0
...............CAATTACAGCCAGTCTTT.......................................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:10211583-10211833 - dvi_19316 TTT-AAGTC------GTTTTTGGTTTATGTAGGT----------------CAGAAAACTTA-----------------------TTGAAGTCAAATAATTCTTAGAA----------------------------------------------------ACTCGTTGCCAAAAAAGAAA------------------------------------------------------------------------------------------------------------AAACAAGTTTAACTCT-ATA-TA-TGGCCAGGTTGTTGAACTCCCCAAT------------------------GCATGCATATCTATATATGT----ATATATATATGAATATTTAATTCCTATTGAATTG-----------------------------ATATATGTGATTATTTACAGTCCTGGGATGCATACTTCCGCAGCAACTCGTACGTGAGCCCGCCCAATTT
droMoj3 scaffold_6680:10585672-10585912 + GTG-AAATA------ATTAATGATTT-------------AC-----------------------------------------------------------TTATATAAGTAAGGATAAGTGATCCGAGCTTAAACTCATAAAATG--------------------------------------------------------------------------------------------------------TGAAT-------------------------TTAAAGAGAAACATGTTTATTTTT-ATAACTCGGTTCAGGTTATTGAACACTTTTAC---GAC------------TA-CCTGTATGCATTTCTATATATACTTTGATTACAACATTTGTATTTGTTTCCC---------------------------------------------------GTTGCAGTCCTGGGATGCCTACTTCCGTAGCAACTCGTATGTGAGCCCGCCCAATTT
droGri2 scaffold_15110:9030824-9031069 + TTG-TGGAAATTCTCGTTAGCGGACACTGTAAACGATAGCCTCAAATATACATAAAACTCG-----------------------CTGAAGCCC--------------------------------------------AATAAATGTAGCTTATTTAAAAATACGT---------AGAAA------------------------------------------------------------------------------------------------------------GAACAAGTTTATTTATTATT-TT-CGACCAGGTTTATGACCT-------------------------------------------------------------------GGT-----------------TTCAACCGAAACACTTGCTAATTATTTATTTGATCGTGTATATTTGTATAGTCCTGGGATGCCTACTTTCGGAGCAACTCGTACATGAGCCCGCCCAATTT
droWil2 scf2_1100000004590:4744444-4744655 - AAC-CTA-----------------------------------------------------------------------------TTGAAGAAAAACAATCTTTAAAAAGTTATTAATACAAATCGATACTTAGCCAGATTAAGTA--------------------------------------------------------------------------------------------------------AAAATCACATTGTTGTTGCCTGCTGTTGTTAT------ATATATGTATATGTAT-ATG------------------TAT------AT------------------------GTATATGTATATGTATATGT----ATATGTATATGTATATGTATATGTATATGTATAT-----------------------------GTATATGTATATGTATATGTATATGACATG-----------------------------------CATAC
dp5 Unknown_group_24:71124-71235 + AAA-TTA-----------------------------------------------------------------------------TTTGAGTTGCAAAAATCGGAAAT----------------------------------------------------ATTCAGTATTAAAAAGTATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAACCTAA-------------------------------------------------------------------------------------------------------CATACAGAACATATGTACATACATATGTATGTAT----ATGTACATACATATCTGGT
droPer2 scaffold_3218:2549-2621 - ATG-TATAT----------------------------------------------------AT---ATGTATATATATGTATAT-----------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTATATATATGTATATATATGTATATATATATAATTGTATA
droAna3 scaffold_13337:13669645-13669700 - TTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCCTGGGATGCCTATTTCCGCAGCAACAGCTACACCAGCCCGCCCAACCT
droBip1 scf7180000396431:793605-793694 - TATATACAG----------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTTGTTGTTATTGTAAAT------------------------GTATAAATATATATATATAT----ATATAGGTATTTA------------------------------------------------------------------------------TATATATTTTCGCTAGAAATCCTAT----------------A
droKik1 scf7180000302486:790332-790390 + TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCAGTCCTGGGATGCGTACTTCCGCAGCAACAGCTATGTCAGCCCCCCCAACTT
droFic1 scf7180000454113:3656310-3656398 - ATT-TCTAT----------------------------------------------------CG---AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGATTG------------------------------------------------------------------------------------------ATTGATTTT----TC-------------------------------------------------------------------------------------------------------CTTGCAGTCTTGGGATGCGTACTTCCGCAGCAACAGCTACGTGAGCCCGCCCAACTT
droEle1 scf7180000491255:3388214-3388270 + TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGTCCTGGGATGCGTACTTCCGCAGCAACAGCTACGTCAGCCCGCCGAACTT
droRho1 scf7180000779902:118647-118703 - TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGTCCTGGGATGCATACTTCCGCAGCAACAGCTACGTCAGCCCGCCCAACTT
droBia1 scf7180000301737:13891-13971 - ATA-TATGT----------------------------------------------------AT---ATATATAAATATACAAAT-----------------------A----TATA---------------------------------------------------------------------------------------------------------------------------------------GG-----------------------------------------------------------------------------------TATATA------------TA-----------------------------------------------CCAAAAAGTAATTCA----------------------------------------------------------------------------ATACATGTAATATTTCAGAGTTC
droTak1 scf7180000415352:409296-409399 - CTA-TATAT----------------------------------------------------TAATTATATATAATGATATTAAA-----------------------A----T-----------------------------------------------------------------T----------------------------------------------------------------------AAAA-----------------------------------------------------------------------------------TCCCTC------------TTC-------------------------------------------------------------------------------------------------------TTTTCAGTCCTGGGATGCGTACTTCCGCAGCAACAGCTACGTCAGCCCGCCGAATTT
droEug1 scf7180000409711:386100-386230 - ATA-TCGAA----------------------------------------------------AA---GAATATTAAATCCCTTAA-----------------------A----TTTATATATATCTTTATTTTG--AGATTATACT---------------------------------A----------------------------------------------------------------------AAAT-----------------------------------------------------------------------------------TCTCTT------------TAA-------------------------------------------------------------------------------------------------------TTTGCAGTCCTGGGATGCGTACTTCCGCAGCAATAGCTACGTCAGCCCCCCCAACTT
dm3 chr3L:16952671-16952854 + GCT-TATAC----------------------------------------------------------------------------TAAAGGGA------ACCAAACT----------------------------------------------------TCTCTGCAATAAAAAATATAATAAAAGCCTAATAAAACGGTGATCCTGGAATAATGCATTCACAATAAATGACATGACAATAAATCCTTATTG------------------------------------------------------------------------------------------ATTCATTC-----TT-------------------------------------------------------------------------------------------------------CTTTTAGTCCTGGGACGCGTACTTCCGCAGCAACAGCTACGTTAGCCCGCCCAACTT
droSim2 node_65696:674-738 - ATA-CATGT----------------------------------------------------AT---ATATATATATATATATCT-----------------------A----TATA---------------------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATCTAT----ATATATATATCTATATATA
droSec2 scaffold_4:2196077-2196180 - CATATCTCT----------------------------------------------------TT---ATATATATATATATATAT-----------------------A----TATG---------------------------------------------------------------------------------------------------------------------------------------CT-----------------------------------------------------------------------------------TTCTAA------------TA------------------------------TATAACATTTGTT-----------------TTTTATACATAAACTTG------------------------TTATTTCCTATTCTTGGACCGATTTTTCCG------------------------------
droYak3 3L:17122531-17122586 - TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTCCTGGGATGCGTACTTCCGCAGCAACAGCTACGTTAGCCCGCCCAACTT
droEre2 scaffold_4784:16890042-16890131 - ATA-TATAA----------------------------------------------------AC---ACA---------------------------------------------------------------------ATAAAT--------------------------------------------------------------------------------------------------------ACTA------------------------------------------------------------------------------------------ATTCAATA-----TG-------------------------------------------------------------------------------------------------------CTTTTAGTCCTGGGATGCGTACTTCCGCAGCAACAGCTACGTTAGCCCGCCCAACTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTT-AAGTC------GTTTTTGGTTTATGTAGGT----------------CAGAAAACTTA-----------------------TTGAAGTCAAATAATTCTTAGAA----------------------------------------------------ACTCGTTGCCAAAAAAGAAA------------------------------------------------------------------------------------------------------------AAACAAGTTTAACTCT-ATA-TA-TGGCCAGGTTGTTGAACTCCCCAAT------------------------GCATGCATATCTATATATGT----ATATATATATGAATATTTAATTCCTATTGAATTG-----------------------------ATATATGTGATTATTTACAGTCCTGGGATGCATACTTCCGCAGCAACTCGTACGTGAGCCCGCCCAATTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGATGCATACTTCCGCAGCA.........................2213.003002000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTCCGCAGCAACTCGTACG................2213.003001000000000000002000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCAACTCGTACGTGAGCCCGCCC.....2713.003000000000000001000100010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTCGTACGTGAGCCC.........1913.003003000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACTTCCGCAGCAACTCGTACGTGA.............2712.002000000000000000010100000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCGTACGTGAGCCCGCCCA....2212.002000000000000000001010000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGTACGTGAGCCCGCCC.....2012.002001000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGTACGTGAGCCCGCC......1912.002002000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACTCGTACGTGAGCCC.........2112.002011000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCAACTCGTACGTGAGCCC.........2312.002101000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAGCAACTCGTACG................1912.002002000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGCAACTCGTACGTGAGCCCGCC......2711.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCAACTCGTACGTGAGCCCGCC......2611.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTCCGCAGCAACTCGTAC.................2111.001000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCAACTCGTACGTGAGCC..........2211.001000000000000000000000000000000000000000000000000000000000000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCCGCAGCAACTCGTA..................2111.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACTCGTACGTGAGCCCGCCCA....2511.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACTCGTACGTGAGCCCGCC......2311.001000000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTCGTACGTGAGCCCGCCC.....2311.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTTCCGCAGCAACTCGTAC.................2411.001000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTACGTGAGCCCGCCCAATT.2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAGCAACTCGTACGTGAGCC..........2511.001000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGGATGCATACTTCCGCAGCA.........................2411.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCGCAGCAACTCGTAC.................1911.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTTCCGCAGCAACTCGTACGT...............2611.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCAACTCGTACGTGAGCCCGCCCA....2811.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTGAGCCCGCCCAATTT1911.001000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACTCGTACGTGAGC...........2011.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGCAACTCGTACGTG..............1911.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGGATGCATACTTCCGCAG...........................2311.001000000000000000000010000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCCGCAGCAACTCGTACG................2311.001000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACTCGTACGTGAGCCC.........2211.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGCAACTCGTACGTGAGCCC.........2411.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCAGCAACTCGTACGTGAGCCC.........2511.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCCGCAGCAACTCGTAC.................2011.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCAACTCGTACGTGAG............2011.001000000000000000000000000000000000000000000000000000000000000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTTCCGCAGCAACT......................1911.001000000000000000000100000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGATGCATACTTCCGCAGCAAC.......................2411.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCGCAGCAACTCGTACGTGAGCCC.........2711.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGTACGTGAGCCCGCCCAAT..2311.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACTCGTACGTGAGCCCGCCCAA...2811.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGAGCCCGCCCAATTT2111.001000000000000000100000000000000000000000000000000000000000000000
....................................................................................................CTTAGAA----------------------------------------------------ACTCGTTGCCAAAA........................................................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGATGCATACTTCCGCAGCAACT......................2511.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGTACGTGAGCCCGCCCA....2111.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCGTACGTGAGCCCGCC......2011.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACTCGTACGTGAGCCCGCCC.....2611.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGCATACTTCCGCAGCAACTC.....................2511.001100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGATGCATACTTCCGCA............................2011.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
GTG-AAATA------ATTAATGATTT-------------AC-----------------------------------------------------------TTATATAAGTAAGGATAAGTGATCCGAGCTTAAACTCATAAAATG--------------------------------------------------------------------------------------------------------TGAAT-------------------------TTAAAGAGAAACATGTTTATTTTT-ATAACTCGGTTCAGGTTATTGAACACTTTTAC---GAC------------TA-CCTGTATGCATTTCTATATATACTTTGATTACAACATTTGTATTTGTTTCCC---------------------------------------------------GTTGCAGTCCTGGGATGCCTACTTCCGTAGCAACTCGTATGTGAGCCCGCCCAATTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTATGTGAGCCCGCCCA....1912.002100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCGTATGTGAGCCCGCCCAATTT2611.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATGTGAGCCCGCCCA....1811.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTAGCAACTCGTATGTGAGC...........2411.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGGATGCCTACTTCCGT.............................2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGTATGTGAGCCCGCCCAAT..2311.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTAGCAACTCGTATGTGAGCCC.........2611.001100000
droGri2
TTG-TGGAAATTCTCGTTAGCGGACACTGTAAACGATAGCCTCAAATATACATAAAACTCG-----------------------CTGAAGCCC--------------------------------------------AATAAATGTAGCTTATTTAAAAATACGT---------AGAAA------------------------------------------------------------------------------------------------------------GAACAAGTTTATTTATTATT-TT-CGACCAGGTTTATGACCT-------------------------------------------------------------------GGT-----------------TTCAACCGAAACACTTGCTAATTATTTATTTGATCGTGTATATTTGTATAGTCCTGGGATGCCTACTTTCGGAGCAACTCGTACATGAGCCCGCCCAATTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................................................................................................................................................................................................................................................................T-------------------------------------------------------------------GGT-----------------TTCAACCGAAACACTT.....................................................................................2011.00110
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGAGCAACTCGTACATG..............2011.00110
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGAGCAACTCGTACATGAGCC..........2411.00110
droWil2
AAC-CTA-----------------------------------------------------------------------------TTGAAGAAAAACAATCTTTAAAAAGTTATTAATACAAATCGATACTTAGCCAGATTAAGTA--------------------------------------------------------------------------------------------------------AAAATCACATTGTTGTTGCCTGCTGTTGTTAT------ATATATGTATATGTAT-ATG------------------TAT------AT------------------------GTATATGTATATGTATATGT----ATATGTATATGTATATGTATATGTATATGTATAT-----------------------------GTATATGTATATGTATATGTATATGACATG-----------------------------------CATACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
AAA-TTA-----------------------------------------------------------------------------TTTGAGTTGCAAAAATCGGAAAT----------------------------------------------------ATTCAGTATTAAAAAGTATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAACCTAA-------------------------------------------------------------------------------------------------------CATACAGAACATATGTACATACATATGTATGTAT----ATGTACATACATATCTGGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ATG-TATAT----------------------------------------------------AT---ATGTATATATATGTATAT-----------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTATATATATGTATATATATGTATATATATATAATTGTATASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCCTGGGATGCCTATTTCCGCAGCAACAGCTACACCAGCCCGCCCAACCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATTTCCGCAGCAACAGCTACACCA.............2811.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACCAGCCCGCCCAAC..1911.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGCAACAGCTACACCA.............2011.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCCGCAGCAACAGCTACACCAGCC..........2811.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTATTTCCGCAGCAACAGCTACAC...............2711.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCTACACCAGCCCGCCCA....2411.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCTACACCAGCCCGCCCAACCT2811.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAGCAACAGCTACACC..............2111.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCTACACCAGCCC.........2011.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACACCAGCCCGCCCAACC.2111.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGATGCCTATTTCCGCAGC..........................2211.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCAGCAACAGCTACACCAGCCC.........2511.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCGCAGCAACAGCTACACCA.............2311.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCCGCAGCAACAGCTACACC..............2411.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGCCTATTTCCGCAGCAACA......................2411.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGGATGCCTATTTCCGCAGCAACAGC....................2911.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCGCAGCAACAGCTAC.................1911.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCTACACCAGCCCGCCC.....2411.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACACCAGCCCGCCCAAC..2011.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCAGCCCGCCCAACCT1911.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCTACACCAGCCCGCCCAA...2511.001100000
droBip1
TATATACAG----------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTTGTTGTTATTGTAAAT------------------------GTATAAATATATATATATAT----ATATAGGTATTTA------------------------------------------------------------------------------TATATATTTTCGCTAGAAATCCTAT----------------ASizeHit CountTotal NormTotal
No Reads
droKik1
TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCAGTCCTGGGATGCGTACTTCCGCAGCAACAGCTATGTCAGCCCCCCCAACTTSizeHit CountTotal NormTotal
No Reads
droFic1
ATT-TCTAT----------------------------------------------------CG---AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGATTG------------------------------------------------------------------------------------------ATTGATTTT----TC-------------------------------------------------------------------------------------------------------CTTGCAGTCTTGGGATGCGTACTTCCGCAGCAACAGCTACGTGAGCCCGCCCAACTTSizeHit CountTotal NormTotal
No Reads
droEle1
TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGTCCTGGGATGCGTACTTCCGCAGCAACAGCTACGTCAGCCCGCCGAACTTSizeHit CountTotal NormTotal
No Reads
droRho1
TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGTCCTGGGATGCATACTTCCGCAGCAACAGCTACGTCAGCCCGCCCAACTTSizeHit CountTotal NormTotal
No Reads
droBia1
ATA-TATGT----------------------------------------------------AT---ATATATAAATATACAAAT-----------------------A----TATA---------------------------------------------------------------------------------------------------------------------------------------GG-----------------------------------------------------------------------------------TATATA------------TA-----------------------------------------------CCAAAAAGTAATTCA----------------------------------------------------------------------------ATACATGTAATATTTCAGAGTTCSizeHit CountTotal NormTotal
No Reads
droTak1
CTA-TATAT----------------------------------------------------TAATTATATATAATGATATTAAA-----------------------A----T-----------------------------------------------------------------T----------------------------------------------------------------------AAAA-----------------------------------------------------------------------------------TCCCTC------------TTC-------------------------------------------------------------------------------------------------------TTTTCAGTCCTGGGATGCGTACTTCCGCAGCAACAGCTACGTCAGCCCGCCGAATTTSizeHit CountTotal NormTotal
No Reads
droEug1
ATA-TCGAA----------------------------------------------------AA---GAATATTAAATCCCTTAA-----------------------A----TTTATATATATCTTTATTTTG--AGATTATACT---------------------------------A----------------------------------------------------------------------AAAT-----------------------------------------------------------------------------------TCTCTT------------TAA-------------------------------------------------------------------------------------------------------TTTGCAGTCCTGGGATGCGTACTTCCGCAGCAATAGCTACGTCAGCCCCCCCAACTTSizeHit CountTotal NormTotal
No Reads
dm3
GCT-TATAC----------------------------------------------------------------------------TAAAGGGA------ACCAAACT----------------------------------------------------TCTCTGCAATAAAAAATATAATAAAAGCCTAATAAAACGGTGATCCTGGAATAATGCATTCACAATAAATGACATGACAATAAATCCTTATTG------------------------------------------------------------------------------------------ATTCATTC-----TT-------------------------------------------------------------------------------------------------------CTTTTAGTCCTGGGACGCGTACTTCCGCAGCAACAGCTACGTTAGCCCGCCCAACTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACGTTAGCCCGCCCA....18129.002900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001031700000500001010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGACGCGTACTTCCGCAGCAACA......................25121.002100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121000000200000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000020000000000000000000001000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGACGCGTACTTCCGC.............................18121.002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014000001000000002001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTACTTCCGCAGCAACA......................20111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000200000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCGTACTTCCGCAGCAACA......................2119.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTACTTCCGCAGCAACA......................1919.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000200000000000300000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTACTTCCGCAGCAACA......................1818.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACGTTAGCCCGCCCAACT.2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000600000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACGTTAGCCCGCCCAAC..2018.0080000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001400000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGACGCGTACTTCCGCAGCAACA......................2417.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000020000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACGTTAGCCCGCCCAA...1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000300000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCTACGTTAGCC..........1915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGACGCGTACTTCCGCAGCAACA......................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGGACGCGTACTTCCGC.............................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGACGCGTACTTCCGC.............................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCGTACTTCCGCAGCAACA......................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCTACGTTAGCCCGCC......2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGCGTACTTCCGCAGCAACA......................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGGACGCGTACTTCCGCA............................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGGACGCGTACTTCCGCAGC..........................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCTACGTTAGCCCGCC......2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCTACGTTAGCCCGCC......1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACGTTAGCCCGCCCAACTT2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGACGCGTACTTCCGCAGCAACAGC....................2712.0020000000000000000000000000000000000000000000000000000000001000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGGACGCGTACTTCCGCA............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGACGCGTACTTCCGCA............................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGGACGCGTACTTCCGCAGCAACA......................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCTACGTTAGCCC.........2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGGACGCGTACTTC................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCTACGTTAGCCCGCC......2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGGACGCGTACTTCCGC.............................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGGACGCGTACTTCC...............................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCTACGTTAGCCCGCCC.....2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCTACGTTAGCCC.........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTAGCCCGCCCAACTT1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCTACGTTAGCCCGCCC.....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTCCGCAGCAACAGCTACGTTAGCCC.........2911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCTACGTTAGCCCGCCCA....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TAATGCATTCACAATAAATC...............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCTACGTTAGCCCGCCC.....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCTACGTTAGCCCGCCC.....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGGACGCGTACTTCC...............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGGACGCGTACTTCCGCAGCAAC.......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCTACGTTAGCCCGC.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACGTTAGCCCGCCCAAA..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGGACGCGTACTTCCGCAGCAACA......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCTACGTTAGCCCGCCCT....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCGCAGCAACAGCTACGTTAGCCCG........2811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTACTTCCGCAGCAACAGC....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGCGTACTTCCGCAGCAACG......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCTACGTTAGCCCGCC......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTACGTTAGCCCGCC......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCTACGTTAGCCCGCCCA....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGACGCGTACTTCCGCAGC..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGACGCGTACTTCCGCAGCAACAGCTAC.................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGGACGCGTACTTCCG..............................2011.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATA-CATGT----------------------------------------------------AT---ATATATATATATATATCT-----------------------A----TATA---------------------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATCTAT----ATATATATATCTATATATASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
CATATCTCT----------------------------------------------------TT---ATATATATATATATATAT-----------------------A----TATG---------------------------------------------------------------------------------------------------------------------------------------CT-----------------------------------------------------------------------------------TTCTAA------------TA------------------------------TATAACATTTGTT-----------------TTTTATACATAAACTTG------------------------TTATTTCCTATTCTTGGACCGATTTTTCCG------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTCCTGGGATGCGTACTTCCGCAGCAACAGCTACGTTAGCCCGCCCAACTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCTACGTTAGCCCGCCC.....2111.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGGATGCGTACTTCCGCAGCA.........................2511.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGTACTTCCGCAGCAACAGCTACGT...............2811.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGGATGCGTACTTCC...............................1911.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCTACGTTAGCCCGCC......2511.00101000000000
droEre2
ATA-TATAA----------------------------------------------------AC---ACA---------------------------------------------------------------------ATAAAT--------------------------------------------------------------------------------------------------------ACTA------------------------------------------------------------------------------------------ATTCAATA-----TG-------------------------------------------------------------------------------------------------------CTTTTAGTCCTGGGATGCGTACTTCCGCAGCAACAGCTACGTTAGCCCGCCCAACTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGGATGCGTACTTCCGCAGCAACA......................2812.0021000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGATGCGTACTTCCGCAGCAACA......................2512.0021000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCTACGTTAGCCC.........2012.0021100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCTACGTTAGCCCGCCCAACT.2711.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGATGCGTACTTCCGCAGCAACA......................2611.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCTACGTTAGCCC.........2211.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACGTTAGCCCGCCCAAC..2011.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACGTTAGCCCGCCCAACT.2111.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCTACGTTAGCC..........1811.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCTACGTTAGCCCGCC......2111.0010100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGGATGCGTACTTCC...............................1811.0010000010

Generated: 05/16/2015 at 11:47 PM