ID:

dvi_19314

 Coordinate:

scaffold_13049:10208505-10208655 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.3 -1.5 -1.4

Flybase annnotation

CDS [Dvir\GJ12039-cds]; exon [dvir_GLEANR_12038:5]; intron [Dvir\GJ12039-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTATATACGAGACAGATCAGCACGCATCTGTACTCATATTTATATAGTGCACAATTTACAGACCACAATCATTACACTCCGAATTTCAAATCGCTTACAAAAACTAATCAGCATCATTTAAAGAAAACCACATACCAAGCACAAATACTAATAGTTTCCTTTACAAAAAAAAAAAACACACACCCAAATCCGAAATAACAGGCGAGCAGGACATGGAGCGTCAGTTCAAGCTGCCCAGCACCACATTCATT
**************************************************....................................................................(((((.((((.........................)))).)))))......................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060667
160_females_carcasses_total
 V116
male body		 SRR060672
9x160_females_carcasses_total
 SRR060679
140x9_testes_total
 M061
embryo
 M027
male body		 SRR060669
160x9_females_carcasses_total
 V047
embryo
 SRR060664
9_males_carcasses_total
 M028
head
 SRR060657
140_testes_total
 SRR060668
160x9_males_carcasses_total
 SRR1106729
mixed whole adult body
 SRR060659
Argentina_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 V053
head
 SRR060685
9xArg_0-2h_embryos_total
...........................................................................................................................................................................................................GAGCAGGACATGGAGCGTCA............................ 20 0 1 6.00 6 0 0 1 0 2 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0
................................................................................................................................................................................................................GGACATGGAGCGTCAGTTCA....................... 20 0 1 4.00 4 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TGGCGAGCAGGACATGGA.................................. 18 1 1 3.00 3 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GAGCAGGACATGGAGCGTC............................. 19 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GGCGAGCAGGACATGGAGCGTCA............................ 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TGGCGAGCAGGACATGGAGCGTCAGT.......................... 26 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGGAGCGTCAGTTCAAGCT................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCAGGACATGGAGCGTCA............................ 18 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GACATGGAGCGTCAGTTCA....................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GAGCAGGACATGGAGCGT.............................. 18 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................GGCGAGCAGGACATGGAGCGTC............................. 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AGCTGCCCAGCACCACATTCATT 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CTATATACGAGACAGATC......................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACCACATTCA.. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TCAGTTCAAGCTGCCCAGCACC......... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GGACATGGAGCGTCAGTTCAAGC.................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GGACATGGAGCGTCAGTTCAAGCTGC................. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AGCAGGACATGGAGCGTCA............................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GGCGAGCAGGACATGGAGCGTCAG........................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTGGCGAGCAGGACATGGAGCGTCA............................ 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AGCTGCCCAGCACCACATTCA.. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACCACA...... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGGAGCGTCAGTTCACGCTTCCCAGCACC......... 29 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TTCAAGCTGCCCAGCACCACATT.... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GAGCAGGACATGGAGCGTCAGTTCA....................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GGACATGGAGCGTCAGTTC........................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GGCGAGCAGGACATGGAGC................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGGAGCGTCAGTTCAAGCTGCCCAGCA........... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGGCGAGCAGGACATGGA.................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................ACCCAAATCCGAAATAACAG.................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GCGAGCAGGACATGGAGCGTCA............................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGGAGCGTCAGTTCAAGCTGCC................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GAGCAGGACATGGAGCGTCAGTT......................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....ATACGAGACAGATCAGCACGCATCT.............................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GGTTAAGCTGCCCAGCACCAC....... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCAGGACATGGAGCGTCAGTT......................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ACATGGAGCGTCAGTTCA....................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CATGGAGCGTCAGTTCAAGCT................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CATGGAGCGTCAGTTCAAGCTGCCCA.............. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GACATGGAGCGTCAGGTCA....................... 19 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................TGGAGCGTCAGTTCAAGC.................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGGACATGGAGCGTCAGTTCA....................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TCAGTTCAAGCTGCCCAGCACCACATT.... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GTGGAGCGTCAGTTCAAGCTGC................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AGTTCAAGCTGCCCAGCACCACATT.... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................GGACATGGAGCGTCAGTT......................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................TCAGTTCAAGCTGCCCAGCAC.......... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ATGGAGCGTCAGTTCAAGCTGCCCAGCA........... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GAGCGTCAGTTCAAGCTGCC................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGGACATGGAGCGTCAGTTCAA...................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................ACACCCAAATCCGAAATAACAG.................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CAAGCTGCCCAGCACCACATTCA.. 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACAGGCGAGCAGGACATGGAG................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTTGGCGAGCAGGACATGGAGCGTCA............................ 26 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GGCGAGCAGGACATGGGGCGT.............................. 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TGGCGAGCAGGACATGGAGCGTCA............................ 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACCACATT.... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GGACATGGAGCGTCAGTTCAAGCT................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AAGCTGCCCAGCACCACATTCA.. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CTGCCCAGCACCACATTCA.. 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTTGGCGAGCAGGACATGGAGC................................ 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTGGCGAGCAGGACATGGA.................................. 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................AAAAAAAAACACCCACCCA................................................................. 19 1 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CACAAATACTGATAGATTGCT........................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................TGCGCGAGCAGGACATGGAGC................................ 21 3 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTTGGCGAGCAGGACATGGA.................................. 20 3 18 0.11 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................TGTCCAGCTCCACACTCATT 20 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TTTCCTTTTCAAAAAAAAA.............................................................................. 19 1 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................AAAAGACACCCACCCAAACCC............................................................ 21 3 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GATATATGCTCTGTCTAGTCGTGCGTAGACATGAGTATAAATATATCACGTGTTAAATGTCTGGTGTTAGTAATGTGAGGCTTAAAGTTTAGCGAATGTTTTTGATTAGTCGTAGTAAATTTCTTTTGGTGTATGGTTCGTGTTTATGATTATCAAAGGAAATGTTTTTTTTTTTTGTGTGTGGGTTTAGGCTTTATTGTCCGCTCGTCCTGTACCTCGCAGTCAAGTTCGACGGGTCGTGGTGTAAGTAA
**************************************************....................................................................(((((.((((.........................)))).)))))......................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060682
9x140_0-2h_embryos_total
 V047
embryo
 SRR060673
9_ovaries_total
 V053
head
 M028
head
 SRR060663
160_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060689
160x9_testes_total
...........................................................................TGAGGTTTAAAGTTTAGC.............................................................................................................................................................. 18 1 2 0.50 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TCCGCTCGTCCTTTACCTCAAA.............................. 22 3 3 0.33 1 0 1 0 0 0 0 0 0
.........................................................TTTCTGGTTGTAGTAATGTGA............................................................................................................................................................................. 21 3 5 0.20 1 0 0 1 0 0 0 0 0
.....................................................................................................................................TGGTTCGTGTTTTTGATTAA.................................................................................................. 20 2 7 0.14 1 1 0 0 0 0 0 0 0
..............................................................................................................................TGGTGTGTAGTTCGTGTTTAG........................................................................................................ 21 3 7 0.14 1 0 1 0 0 0 0 0 0
...........................................................................................................AGTCGTAGTAAGGTTCTT.............................................................................................................................. 18 2 11 0.09 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCAAGGTCGACGGGTCAT........... 18 2 11 0.09 1 0 0 0 0 1 0 0 0
...AATTGCTCTGTCTAGTAG...................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0
.........GCAGTCTAGTCGTGGGTA................................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 1 0 0
........................................................ATGTCTGGTGTTGGTAT.................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 1 0 0 0 0
.................................................................................................GTTTTTGATGTTTCGTAGTAA..................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 1
........................................................................................................................................................ACAAAGGAACTGTTTTTT................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:10208455-10208705 - dvi_19314 CTATATACGAGACAG--------ATCAGCACG--CATCTGTACTCATA-----------------------TTTA-----------------------TATAGT-GCACAA--TTTACAGAC---------------CACAATCATTACACTCCGAATTTCAAA-T------------CGCTTACAAAAACTAATC-AGCATCATTTAAAGAAAAC---------------------------CAC-ATACCAAG--CAC-------------------------------------------AAATACTAA----------------TAGTTTCCTTTACAAAA-----------------------------------AAAAAAAACA---CAC-ACC---CAAAT-CC----------------GAAATAACAGGCGAGCAGGACATGGAGCGTCAGTTCAAGCTGCCCAGCACCACATTCATT
droMoj3 scaffold_6680:10588689-10588962 + TTACATATAGGACAG--------ATCAGCATG--TATCTGTACAT-----------------A-------ATATATATA--------------TATA-TGTAGAATCACAA--TTTACAGACAATACAAA-------TACAATCATTACACTCCGAATTTCAAA-AA----------ACGCCTACAAAAACTAATC-AGCATCATTTAAAGAA---------------------------------------------AC---------------------------GTATCAAATCAAGTTCAATTACTAA----------------T---------------AGTTTTATCCTC-TAT---A-------------AAAAC---AAATC---CCCAACC----CAAA-CC-A--------AA---AAAATAAACAGGTGAACAGGATATGGAACGTCAGTTCAAGCTGCCCAGCACCACCTTCATT
droGri2 scaffold_15110:9033879-9034142 + TA--------GACAG--------ATCTGCACG--CATCTGTATTTACATATACACC----------------------A--------------TATACTATAGA-GCACAA--TATACAGAC---------------AACAATCATTACACTCCGAATTTCAAA-C-------------GCCTACAAAAACTAATCAAGCATCATTTATAGAAATCAATTTACCCCTATGATTT---ACTAAT-----------------------------------------------------------------------------------------------------AGTTTTATTTAT---TTACAACAAACAACAACAAAAAC---AAAACAATCCACA-----------C----------------ATAAATAACAGGCGAGCAAGATATGGAGCGTCGTTTTAAGTTGCCCAGCACCACTTTCATT
droWil2 scf2_1100000004511:1294820-1295126 + CTGCATGTTAAACAAAAAAAACTATCTGCATG--TTTA--------------CACCATAAAAA-------CTATGTAAT--------------TCTA-TATAGA-GAAGAT--AAAACCAAC---------------CTTGATCATTACACTCCGAATTTCAAA-CTA-AACATTTAATGCCT--------------------------------------------AATTTTAAAAACTAATCCC-ACACAATA-ACTAA-AACCAAAAATACTTACAAAAAAAACATATTTTAT-ACGATCAA---------------------------CAATTTTGCTAATATCAACT----TTTT---------------------------------TCTAACA----AAAA--ACAAA-AACCACA---AAAAAAAACAGGCGAACAGGATATGGAACGTCAGTTCAAATTGCCAAGCACCACATTTATA
dp5 XR_group8:4777750-4778021 + ATACACC------------------------------------CC-----------------CACTACAA-TATATATTGTA--CATACATACTTTA-TCTAG---------------------------AAGCAA--CAAGTCATTACACTCCGAATTTCAAC-CCAAAACATTTGCCGCCT--------------------------------------------ACAAATT---ACTAACCCC-CCCAAATA-AACAACAAACAAAAATGT-C----AGACACCATACC------------------ACTCTCCTCCCACCCACAACGAGCACTTCACTAATATATGAATACCCAAT---------------------------------CCCCACC----C----------------AA---AAAAAAAACAGGCGAACAGGATATGGAGCGTCAGTTCAAGCTGCCCAGCACCACCTTCATT
droPer2 scaffold_29:397735-397761 + ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGCTGCCATCGTCCACGCTGATT
droAna3 scaffold_13337:13666819-13667013 - A---------------------------------------------------------------------------------------------------------------------------------------CAAAAGTCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGCCT--------------------------------------------ACAGTTTACTACTAACCCCCACACTTTA-GTCC-------------------------------------------------------------AATCTCAAGGAGCACCTTACTAATGTATTGCC------T---------------------------------TCCCTCC----CATAACC-AAAAA----AATATAAAAAACACAGGCGAGCAGGACATGGAGCGTCAGTTCAAACTGCCCAGCACCACTTTCATC
droBip1 scf7180000395832:608245-608440 - AA---------A----------------------------------------------------------------------------------------------------------------------------CAAAAGTCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGCCT--------------------------------------------ACAGTTAACTACTAACCTTCACACTTAA-ATCC-------------------------------------------------------------AATCTCGATGAGCTCCTTACTAATGTATTGCC------T---------------------------------TCCCTCC----CAAAACCCAAA-A----AATA-AACAAATACAGGCGAGCAGGACATGGAGCGTCAGTTCAAGCTACCCAGCACCACCTTCATC
droKik1 scf7180000302486:793124-793308 + --------------------------------------------------------------------------------------------------------------------------------------------AATCATTACACTCCGAATTTCAAAACCA--ACATTTGCCGCCT--------------------------------------------ACAGTTT---ACTAACCCT--CACTTGAACCCC-------------------------------------------------------------AACCTTACGGAACCCCTTACTAAAGTCTTAACCCATTCT---------------------------------TAC---CCCCTCAATTTGTT--------------ATGGAAACAGGCGAGCAGGATATGGAGCGTCAGTTCAAGCTGCCCAGCACCACCTTTATC
droFic1 scf7180000454113:3653537-3653719 - -----------------------------------------------------------------------------------------------------------------------------------------------CATTACACTCCGAATTTCAAA-CCA--ACATTCGCTGCCT--------------------------------------------TTGATTT---ACTAACCCA-TCACTCTG-TCAC-------------------------------------------------------------AACCATTA-AAACACCTTACTAAAGTCTTACCCACTTGT---------------------------------TACCACC----CATT--GTAAT-G----AT---AAAAAAAACAGGCGAGCAGGACATGGAGCGCCAGTTCAAGCTGCCCAGCACCACCTTCATT
droEle1 scf7180000491255:3390857-3391046 + A---------------------------------------------------------------------------------------------------------------------------------------CCAAAATCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGCCT--------------------------------------------ACAGTTT---ACTAACCTCAACACTTTG-ACCC-------------------------------------------------------------AACCACTCAGTATCCCTTACTAAAGTCTTAACCCATTGT---------------------------------TTCAAAC----CAAT-CGCAT------------AAAAAAAACAGGCGAGCAGGACATGGAGCGGCAGTTCAAGTTGCCCAGCACCACCTTCATT
droRho1 scf7180000779902:115932-116154 - TC------------------------------------TGTA------------------------------------------CGAACACT-CC---TGAATC-CCGAAATG-----------------AAGCAACAAAAATCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGCCT--------------------------------------------ACAGTTT---ACTAACCCCAACACTTTG-ACAA-------------------------------------------------------------AACCATTTTGAACCCCTTACTAAAGTCTTAACCCATTGT---------------------------------TCCAAAC----CATT--GCA-------------ACAAAAAACAGGCGAGCAGGACATGGAACGCCAGTTCAAGTTGCCCAGCACCACCTTCATT
droBia1 scf7180000302428:3156904-3157090 - C-----------------------------------------------------------------------------------------------------------------------------------------AAAGTCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGCCT--------------------------------------------ACACTTT---ACTAACCCC-CCATAATG-ACAC-------------------------------------------------------------AACCATTAAGAGCCCCTTACTAAAGTCTTGACCCATTGT---------------------------------TCCCACC----CAATGCACA-------------AAAAAAAACAGGCGAGCAGGACATGGAGCGCCAGTTCAAGCTGCCGAGCACCACCTTCATC
droTak1 scf7180000415352:406628-406817 - AA---------A----------------------------------------------------------------------------------------------------------------------------CAAAAATCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGCCT--------------------------------------------ACAGTTT---ACTAACTCC-CCATTATA-CCAC-------------------------------------------------------------CGCCATTAAGAACCCCTTACTAAAGTCTTGAC------T---------------------------------TCCCACC----CTCTCTGCACA-A----TA---AATAAATACAGGCGAGCAGGACATGGAGCGCCAGTTCAAGCTTCCCAGCACCACCTTCATC
droEug1 scf7180000409711:383329-383518 - A---------------------------------------------------------------------------------------------------------------------------------------CAAAAATCATTACACTCCGAATTTCAAA-ACA--ACATTTGCCGCCT--------------------------------------------ACAATTT---ACTAACCGC-CCACCATG-ACAC-------------------------------------------------------------CACCATTCAGAACCCCTTACTAAAGTCTTAACCCATTTT---------------------------------TCCAACC----CTAT--GCAAT-------A---AAATAAAACAGGTGAGCAGGACATGGAGCGTCAGTTCAAACTGCCCAGCACCACCTTCATC
dm3 chr3L:16955299-16955484 + A---------------------------------------------------------------------------------------------------------------------------------------CAAAAATCATTACACTCCGAATTTCAAA-CCA--ACATCTGCCGCCT--------------------------------------------ACAATTT---ACTAATCCC-ACACCATG-ACAC-------------------------------------------------------------AATCACTCAAAACCCCTTACTAAAGTCTTAACCCATTGT---------------------------------TCCAACC----CACTGCGCA----------------AAAAACAGGCGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCACTACCTTCATC
droSim2 3l:16537806-16538079 + dsi_18184 CCGTGAACAAACCAG--------CTGAGCATGAGCATCCGATCCC-----------------AATTTCAACTCTGTACTGCGTACAAACACC-TCCG-AATAG---------------------------AAGCAAC-AAAATCATTACACTCCGAATTTCAAA-CCA--ACATCTGCCGCCT--------------------------------------------ACAATTT---ACTAATCCC-ACACCATG-ACAC-------------------------------------------------------------AATCACTCAGAACCCCTTACTAAAGTCTTAACCCATTTT---------------------------------TCCAACC----CACTGCGCAAA-A----AA---AAAAAAAACAGGCGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCACTACCTTCATC
droSec2 scaffold_0:9016726-9016917 + A---------------------------------------------------------------------------------------------------------------------------------------CAAAAACCATTACACTCCGAATTTCAAA-CCA--ACATCTGCCGCCT--------------------------------------------ACAATTT---ACTAATCCC-ACACCATG-ACAC-------------------------------------------------------------AATCACTCAGAACCCCTTACTAAAGTCTTAACCCATTGT---------------------------------TCCAACC----CACTGCGCAAA-------A---AAAAAAAACAGGCGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCACTACCTTCATC
droYak3 3L:17119893-17120082 - A---------------------------------------------------------------------------------------------------------------------------------------CAAAAATCATTACACTCCGAATTTCAAA-CCA--ACATCCGCCGCCT--------------------------------------------ACAATTT---ACTAATCCC-ACACCATG-ACAC-------------------------------------------------------------AATCACCCAGAACCCCTTACTAAAGATTAAACCCATTGT---------------------------------TCC---C----CA-TGCGCAAA-A----AA---AATATAAACAGGTGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCACTACCTTCATC
droEre2 scaffold_4784:16887395-16887587 - A---------------------------------------------------------------------------------------------------------------------------------------CAATAATCATTACACTCCGAATTTCAAA-CCA--ACATCTGCCGCCT--------------------------------------------ACAATTT---ACTAATCCC-AAACCATG-ACAC-------------------------------------------------------------AACCATTCA-AACCCCTTACTAAAGTTTTAACCCATTGT---------------------------------TCAAACC----CACTGCGCAAA-A----AA---AAAATAAACAGGTGAGCAGGACATGGACCGCCAGTTCAAGCTGCCCAGCACTACCTTCATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CTATATACGAGACAG--------ATCAGCACG--CATCTGTACTCATA-----------------------TTTA-----------------------TATAGT-GCACAA--TTTACAGAC---------------CACAATCATTACACTCCGAATTTCAAA-T------------CGCTTACAAAAACTAATC-AGCATCATTTAAAGAAAAC---------------------------CAC-ATACCAAG--CAC-------------------------------------------AAATACTAA----------------TAGTTTCCTTTACAAAA-----------------------------------AAAAAAAACA---CAC-ACC---CAAAT-CC----------------GAAATAACAGGCGAGCAGGACATGGAGCGTCAGTTCAAGCTGCCCAGCACCACATTCATTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGAGCGTCA............................2016.006000000000000000100010100000002000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGAGCGTCAGTTCA.......................2014.004003000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGAGCGTC.............................1912.002000000020000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCAGGACATGGAGCGTCA............................2312.002000000000000000002000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCGTCAGTTCAAGCT...................1912.002002000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGAGCGTCA............................1812.002001000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGAGCGTCAGTTCA.......................1912.002002000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGAGCGT..............................1812.002001000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCAGGACATGGAGCGTC.............................2211.001100000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCCCAGCACCACATTCATT2311.001001000000000000000000000000000000000000000000000000000000000000
CTATATACGAGACAG--------ATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACCACATTCA..2611.001000000000000000000100000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTTCAAGCTGCCCAGCACC.........2211.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGAGCGTCAGTTCAAGC....................2311.001000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGAGCGTCAGTTCAAGCTGC.................2611.001100000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGACATGGAGCGTCA............................1911.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCAGGACATGGAGCGTCAG...........................2411.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCCCAGCACCACATTCA..2111.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACCACA......2211.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGCTGCCCAGCACCACATT....2311.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGAGCGTCAGTTCA.......................2511.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGAGCGTCAGTTC........................1911.001000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCAGGACATGGAGC................................1911.001010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCGTCAGTTCAAGCTGCCCAGCA...........2711.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGAGCAGGACATGGA..................................1811.001000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................ACC---CAAAT-CC----------------GAAATAACAG..................................................2011.001000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGCAGGACATGGAGCGTCA............................2211.001000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCGTCAGTTCAAGCTGCC................2211.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGAGCGTCAGTT.........................2311.001000000000000000000000000000000000000000000000000000000000000010
....ATACGAGACAG--------ATCAGCACG--CATCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGAGCGTCAGTT.........................2111.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGAGCGTCAGTTCA.......................1811.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGCGTCAGTTCAAGCT...................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGCGTCAGTTCAAGCTGCCCA..............2611.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCGTCAGTTCAAGC....................1811.001000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACATGGAGCGTCAGTTCA.......................2111.001010000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTTCAAGCTGCCCAGCACCACATT....2711.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCAAGCTGCCCAGCACCACATT....2511.001000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGAGCGTCAGTT.........................1811.001000000000100000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTTCAAGCTGCCCAGCAC..........2111.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCGTCAGTTCAAGCTGCCCAGCA...........2811.001000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGTCAGTTCAAGCTGCC................2011.001000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACATGGAGCGTCAGTTCAA......................2211.001100000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AC-ACC---CAAAT-CC----------------GAAATAACAG..................................................2211.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCTGCCCAGCACCACATTCA..2311.001000000000000000000010000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCGAGCAGGACATGGAG.................................2111.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACCACATT....2411.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGAGCGTCAGTTCAAGCT...................2411.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGCCCAGCACCACATTCA..2211.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCCAGCACCACATTCA..1911.001000000000000000000010000000000000000000000000000000000000000000
droMoj3
TTACATATAGGACAG--------ATCAGCATG--TATCTGTACAT-----------------A-------ATATATATA--------------TATA-TGTAGAATCACAA--TTTACAGACAATACAAA-------TACAATCATTACACTCCGAATTTCAAA-AA----------ACGCCTACAAAAACTAATC-AGCATCATTTAAAGAA---------------------------------------------AC---------------------------GTATCAAATCAAGTTCAATTACTAA----------------T---------------AGTTTTATCCTC-TAT---A-------------AAAAC---AAATC---CCCAACC----CAAA-CC-A--------AA---AAAATAAACAGGTGAACAGGATATGGAACGTCAGTTCAAGCTGCCCAGCACCACCTTCATTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTCAAGCTGCCCAGCAC..........2013.003300000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAACAGGATATGGAA.................................1811.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGGATATGGAACGTCA............................2011.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATGGAACGTCAGTTCAAGCT...................2411.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGATATGGAACGTCAGT..........................2011.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAACGTCAGTTCAAGCTG..................2111.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAACAGGATATGGAACGTCAGT..........................2511.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGATATGGAACGTCAGT..........................2111.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACAGGATATGGAACGT..............................1911.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAACAGGATATGGAACGT..............................2111.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATATGGAACGTCAGTT.........................2011.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAACGTCAGTTCAAGCTGCCC...............2411.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATGGAACGTCAGTTCA.......................2011.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAACGTCAGTTCAAGCTGCCC...............2511.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAACGTCAGTTCAAGC....................2011.001100000
droGri2
TA--------GACAG--------ATCTGCACG--CATCTGTATTTACATATACACC----------------------A--------------TATACTATAGA-GCACAA--TATACAGAC---------------AACAATCATTACACTCCGAATTTCAAA-C-------------GCCTACAAAAACTAATCAAGCATCATTTATAGAAATCAATTTACCCCTATGATTT---ACTAAT-----------------------------------------------------------------------------------------------------AGTTTTATTTAT---TTACAACAAACAACAACAAAAAC---AAAACAATCCACA-----------C----------------ATAAATAACAGGCGAGCAAGATATGGAGCGTCGTTTTAAGTTGCCCAGCACCACTTTCATTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGATATGGAGCGTCGTTTTA.......................2311.00101
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCGTCGTTTTAAGTTGCCCAGCACC.........2811.00101
droWil2
CTGCATGTTAAACAAAAAAAACTATCTGCATG--TTTA--------------CACCATAAAAA-------CTATGTAAT--------------TCTA-TATAGA-GAAGAT--AAAACCAAC---------------CTTGATCATTACACTCCGAATTTCAAA-CTA-AACATTTAATGCCT--------------------------------------------AATTTTAAAAACTAATCCC-ACACAATA-ACTAA-AACCAAAAATACTTACAAAAAAAACATATTTTAT-ACGATCAA---------------------------CAATTTTGCTAATATCAACT----TTTT---------------------------------TCTAACA----AAAA--ACAAA-AACCACA---AAAAAAAACAGGCGAACAGGATATGGAACGTCAGTTCAAATTGCCAAGCACCACATTTATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGGATATGGAACGTCAGTT.........................23116.0016005110
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGGATATGGAACGTCA............................20111.001100920
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGGATATGGAACGTCAGT..........................2218.00800350
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGATATGGAACGTCAGTTCA.......................2414.00430100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATATGGAACGTCAGTT.........................2013.00300120
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATATGGAACGTCAGTT.........................1913.00300120
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAACAGGATATGGAAC................................1913.00330000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGATATGGAACGTCA............................1912.00200200
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTGCCAAGCACCAC.......1812.00200020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGGATATGGAACGT..............................1812.00200020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGGATATGGAACGTC.............................1912.00200110
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAACAGGATATGGAACGT..............................2012.00200200
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATATGGAACGTCAGT..........................1911.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATATGGAACGTCAGTTCAAATTGCC................2911.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGATATGGAACGTCAGTTC........................2311.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATATGGAACGTCAGTTCA.......................2111.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCAAGCACCACATTTATA2111.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTCAAATTGCCAAGCACCAC.......2311.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGATATGGAACGTCAGTTCA.......................2311.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATATGGAACGTCAGTTCAAATTGCC................2811.00110000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAACAGGATATGGAACG...............................1911.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGGATATGGAACGTCAGTTCA.......................2511.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATATGGAACGTCAGTTCAAA.....................2411.00110000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGATATGGAACGTCAGTTC........................2211.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAACAGGATATGGAAC................................1811.00101000
.......................................................................................................A-GAAGAT--AAAACCAAC---------------CTTGATCATT....................................................................................................................................................................................................................................................................................................................................................2611.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGGAACGTCAGTTCAAATT...................2311.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGATATGGAACGTCAGTT.........................2111.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGGAACGTCAGTTCAA......................2011.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGATATGGAACGTCAGTT.........................2211.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGATATGGAACGTCAGTTCAAAT....................2611.00100010
......................................................................................................................................................................................................................................................................................................AT-ACGATCAA---------------------------CAATTTTGCTAAT..............................................................................................................................................2311.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATATGGAACGTCAGTTCA.......................2211.00110000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGGAACGTCAGTTCAAAT....................2211.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAACAGGATATGGAACGTC.............................2211.00110000
dp5
ATACACC------------------------------------CC-----------------CACTACAA-TATATATTGTA--CATACATACTTTA-TCTAG---------------------------AAGCAA--CAAGTCATTACACTCCGAATTTCAAC-CCAAAACATTTGCCGCCT--------------------------------------------ACAAATT---ACTAACCCC-CCCAAATA-AACAACAAACAAAAATGT-C----AGACACCATACC------------------ACTCTCCTCCCACCCACAACGAGCACTTCACTAATATATGAATACCCAAT---------------------------------CCCCACC----C----------------AA---AAAAAAAACAGGCGAACAGGATATGGAGCGTCAGTTCAAGCTGCCCAGCACCACCTTCATTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGGATATGGAGCGTCA............................2013.0030200001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATATGGAGCGTCAGTTCA.......................2113.0030100000020
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGATATGGAGCGTCAGTT.........................2212.0020100001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCAAGCTGCCCAGCAC..........1911.0010010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCGTCAGTTCAAGC....................1811.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGGAGCGTCAGTTCAA......................2011.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAACAGGATATGGAGC................................1911.0010000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATGGAGCGTCAGTTCAAGCTGC.................2611.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGATATGGAGCGTCAGTTC........................2311.0010000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACCA........2011.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGGATATGGAGCGT..............................1811.0010000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATGGAGCGTCAGTTC........................1911.0011000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCGTCAGTTCAAGCTGCCCAGCAC..........2911.0010000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGATATGGAGCGTCA............................1911.0010000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGGAGCGTCAGTTC........................1811.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATATGGAGCGTCAGTTCAAGC....................2411.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATGGAGCGTCAGTTCA.......................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCGTCAGTTCAAGCT...................1811.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACCAC.......2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATATGGAGCGTCAGTTCAAGCT...................2511.0010000000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAACAGGATATGGAGCGTC.............................2211.0010000001000
droPer2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGCTGCCATCGTCCACGCTGATTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
A---------------------------------------------------------------------------------------------------------------------------------------CAAAAGTCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGCCT--------------------------------------------ACAGTTTACTACTAACCCCCACACTTTA-GTCC-------------------------------------------------------------AATCTCAAGGAGCACCTTACTAATGTATTGCC------T---------------------------------TCCCTCC----CATAACC-AAAAA----AATATAAAAAACACAGGCGAGCAGGACATGGAGCGTCAGTTCAAACTGCCCAGCACCACTTTCATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGAGCGTCA............................2016.006100050
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCAGGACATGGAGC................................1915.005310001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCGTCAGTTCAAACTGCCCAGCACC.........2814.004000004
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCAGGACATGGAGCGTCA............................2313.003200010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGTCAGTTCAAACTGCCCAGCACC.........2713.003300000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGAGCGTC.............................1913.003100020
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCGTCAGTTCAAACTGCCCAGC............2613.003000012
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAACTGCCCAGCACCA........2013.003030000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCGTCAGTTCAAACTGCCC...............2312.002100001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACATGGAGCGTCAGTTCA.......................2212.002000002
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGACATGGAGCGTCA............................1912.002100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGAGCGTCAGTTCAAA.....................2012.002100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTCAGTTCAAACTGCCC...............2011.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCGTCAGTTCAAACTGCCCAGCAC..........2811.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGAGCGTCAGTTCAAA.....................2511.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACATGGAGCGTCAGTTCAAAC....................2411.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGCCCAGCACCACTTC....2011.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTCAGTTCAAACTGCCCAGCACCAC.......2811.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGAGCGTCA............................1811.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGAGCGTCAGTTCAAACTGCC................2711.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCAGGACATGGAG.................................1811.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGCAGGACATGGAGCGT..............................2011.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGAGCGTCAGTTCA.......................1811.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACATGGAGCGTCAGT..........................1911.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCCCAGCACCACTTTCAT.2211.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCGTCAGTTCAAAC....................1911.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGAGCGTCAGTTCAA......................2111.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGAGCGTCAGTT.........................2311.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGAGCGTCAGTTCAAAC....................2111.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGAGCGTCAGTTCAAAC....................2611.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCGTCAGTTCAAACTGCCCAGC............2511.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCAGGACATGGAGCGT..............................2111.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGAGCGTCAGTTCAAACTGCCC...............2811.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCGTCAGTTCAAACTGCCCA..............2511.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCAGGACATGGAGCGTCA............................2111.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGAGCGTCAGTTCAAACTGCCC...............2711.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGAGCGTCAGTTC........................2211.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAACTGCCCAGCACCAC.......2011.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGAGCGTCAGT..........................2011.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCAGGACATGGAGCGTC.............................2211.001100000
droBip1
AA---------A----------------------------------------------------------------------------------------------------------------------------CAAAAGTCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGCCT--------------------------------------------ACAGTTAACTACTAACCTTCACACTTAA-ATCC-------------------------------------------------------------AATCTCGATGAGCTCCTTACTAATGTATTGCC------T---------------------------------TCCCTCC----CAAAACCCAAA-A----AATA-AACAAATACAGGCGAGCAGGACATGGAGCGTCAGTTCAAGCTACCCAGCACCACCTTCATCSizeHit CountTotal NormTotal
No Reads
droKik1
--------------------------------------------------------------------------------------------------------------------------------------------AATCATTACACTCCGAATTTCAAAACCA--ACATTTGCCGCCT--------------------------------------------ACAGTTT---ACTAACCCT--CACTTGAACCCC-------------------------------------------------------------AACCTTACGGAACCCCTTACTAAAGTCTTAACCCATTCT---------------------------------TAC---CCCCTCAATTTGTT--------------ATGGAAACAGGCGAGCAGGATATGGAGCGTCAGTTCAAGCTGCCCAGCACCACCTTTATCSizeHit CountTotal NormTotal
No Reads
droFic1
-----------------------------------------------------------------------------------------------------------------------------------------------CATTACACTCCGAATTTCAAA-CCA--ACATTCGCTGCCT--------------------------------------------TTGATTT---ACTAACCCA-TCACTCTG-TCAC-------------------------------------------------------------AACCATTA-AAACACCTTACTAAAGTCTTACCCACTTGT---------------------------------TACCACC----CATT--GTAAT-G----AT---AAAAAAAACAGGCGAGCAGGACATGGAGCGCCAGTTCAAGCTGCCCAGCACCACCTTCATTSizeHit CountTotal NormTotal
No Reads
droEle1
A---------------------------------------------------------------------------------------------------------------------------------------CCAAAATCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGCCT--------------------------------------------ACAGTTT---ACTAACCTCAACACTTTG-ACCC-------------------------------------------------------------AACCACTCAGTATCCCTTACTAAAGTCTTAACCCATTGT---------------------------------TTCAAAC----CAAT-CGCAT------------AAAAAAAACAGGCGAGCAGGACATGGAGCGGCAGTTCAAGTTGCCCAGCACCACCTTCATTSizeHit CountTotal NormTotal
No Reads
droRho1
TC------------------------------------TGTA------------------------------------------CGAACACT-CC---TGAATC-CCGAAATG-----------------AAGCAACAAAAATCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGCCT--------------------------------------------ACAGTTT---ACTAACCCCAACACTTTG-ACAA-------------------------------------------------------------AACCATTTTGAACCCCTTACTAAAGTCTTAACCCATTGT---------------------------------TCCAAAC----CATT--GCA-------------ACAAAAAACAGGCGAGCAGGACATGGAACGCCAGTTCAAGTTGCCCAGCACCACCTTCATTSizeHit CountTotal NormTotal
No Reads
droBia1
C-----------------------------------------------------------------------------------------------------------------------------------------AAAGTCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGCCT--------------------------------------------ACACTTT---ACTAACCCC-CCATAATG-ACAC-------------------------------------------------------------AACCATTAAGAGCCCCTTACTAAAGTCTTGACCCATTGT---------------------------------TCCCACC----CAATGCACA-------------AAAAAAAACAGGCGAGCAGGACATGGAGCGCCAGTTCAAGCTGCCGAGCACCACCTTCATCSizeHit CountTotal NormTotal
No Reads
droTak1
AA---------A----------------------------------------------------------------------------------------------------------------------------CAAAAATCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGCCT--------------------------------------------ACAGTTT---ACTAACTCC-CCATTATA-CCAC-------------------------------------------------------------CGCCATTAAGAACCCCTTACTAAAGTCTTGAC------T---------------------------------TCCCACC----CTCTCTGCACA-A----TA---AATAAATACAGGCGAGCAGGACATGGAGCGCCAGTTCAAGCTTCCCAGCACCACCTTCATCSizeHit CountTotal NormTotal
No Reads
droEug1
A---------------------------------------------------------------------------------------------------------------------------------------CAAAAATCATTACACTCCGAATTTCAAA-ACA--ACATTTGCCGCCT--------------------------------------------ACAATTT---ACTAACCGC-CCACCATG-ACAC-------------------------------------------------------------CACCATTCAGAACCCCTTACTAAAGTCTTAACCCATTTT---------------------------------TCCAACC----CTAT--GCAAT-------A---AAATAAAACAGGTGAGCAGGACATGGAGCGTCAGTTCAAACTGCCCAGCACCACCTTCATCSizeHit CountTotal NormTotal
No Reads
dm3
A---------------------------------------------------------------------------------------------------------------------------------------CAAAAATCATTACACTCCGAATTTCAAA-CCA--ACATCTGCCGCCT--------------------------------------------ACAATTT---ACTAATCCC-ACACCATG-ACAC-------------------------------------------------------------AATCACTCAAAACCCCTTACTAAAGTCTTAACCCATTGT---------------------------------TCCAACC----CACTGCGCA----------------AAAAACAGGCGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCACTACCTTCATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................ACC----CACTGCGCA----------------AAAAACAG..................................................20141.00410000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000020000000001712000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010102100001100000000100000000000000000000020100010000000000000000200001210000001100023000
..............................................................................................................................................................................................................................................................................................................................................................................................................CC----CACTGCGCA----------------AAAAACAG..................................................19122.00220000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000100000100000000120000001000000000000000000000000000000001000000000001000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000101000101000000000000000000000121000000000000000000001000001000000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGATCGCCAGTTCAAGCTGC.................2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGATCGCCAGTTCA.......................2016.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000001000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCAGTTCAAGCTGCCC...............1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000200001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACATGGATCGCCAGTTCA.......................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGATCGCCAGTTC........................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................C----CACTGCGCA----------------AAAAACAG..................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000000000000000000000000000000100000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................AACC----CACTGCGCA----------------AAAAACAG..................................................2114.0040000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGACATGGATCGCCA............................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGATCGCCA............................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGATCGC..............................1813.0030000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGATCGCCAGTTCAAGC....................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGTTCAAGCTGCCCAGC............2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGATCGCCAGTTCAAGCT...................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCGCCAGTTCAAGCTGCCCAGCA...........2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGATCGCCAGTTCAAGCT...................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGATCGCCAGTTCAAGCTGCA................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCGCCAGTTCAAGCTGCCC...............2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACTACC......2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCAGTTCAAGCTGCCCA..............2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGCCAGTTCAAGCTGCCCA..............2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTTCAAGCTGCCCA..............1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................ACC----CACTGCGCA----------------AAAAACA...................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCGCCAGTTCAAG.....................1812.0020000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TCTTAACCCATTGT---------------------------------TCCAACC----CACTGCG............................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCGCCAGTTCAAGCTGCC................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................CAACC----CACTGCGCA----------------AAAAACAG..................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCGCCAGTTCAAGC....................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCGCCAGTTCAAGCTGCCC...............2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCCCAGCACTACCTTCATC2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................AA-CCA--ACATCTGCCGCCT--------------------------------------------ACA.................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGTTCAAGCTGCCCA..............1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGTTCAAGCTGCCC...............1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCAAGCTGCCCAGCA...........1812.0020000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................CATG-ACAC-------------------------------------------------------------AATCACTCAAAACCCCTT....................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGATCGCCA............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTCAAGCTGCCCAGCA...........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGATCGCCAGTTCA.......................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCGCCAGTTCAAGCTGCCCAG.............2611.0010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACT.........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCAAGCTGCCCAGCACT.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGCCAGTTCAAGCTGCCCAGCATC.........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGACATGGATCGCC.............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CCAACC----CACTGCGCA----------------AAA.......................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGCCAGTTCAAGCT...................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGCCAGTTCAAGCTGCC................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGCAGGACATGGATCGCCA............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCAGGACATGGAT.................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGCTGCCCAGCACTAC.......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGCTGCCCAGCACTACCTTCG..2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACATGGATCGCCAGTTCC.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCCAGCACTACCTTCA..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCGCCAGTTCAAGCTGC.................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGACATGGATCGCCAGTTCA.......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................GT---------------------------------TCCAACC----CACTGCGCA----------------A.........................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGCCAGTTCAAGCTGCCC...............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGATCGCCAGTTCA.......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCGCCAGTTCAAGCT...................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGATCGCCAGT..........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CCAACC----CACTGCGCA----------------AAAAACAG..................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTTCAAGCTGCCCAGCACT.........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGATCGCCAGTT.........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACATGGATCGCCAGTTC........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCAGTTCAAGCTGCCCAGC............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGACATGGATCGCCAGT..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGCCAGTTCAAGCTG..................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGATCGCCAGTTCAAGC....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACTAC.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGTTCAAGCTGCCCAGCA...........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGATCGCCAGTTCAA......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACATGGATCGCCAGTTC........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGATCGCCAGTTCAA......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCAGTTCAAGCTGCCCAGCACT.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGATCGCC.............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................AACC----CACTGCGCA----------------AAAAACA...................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCAGCACTACCTTCA..1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTCAAGCTGCCCAGCAC..........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACATGGATCGCCAGTTCAAGC....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCAAGCTGCCCAGCACTACC......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACATGGATCGCCAGTT.........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACATGGATCGCCAGT..........................1811.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CCAACC----CACTGCGCA----------------AAAAACA...................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGATCGCCAGT..........................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACATGGATCGCCAGTTCAAGCT...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGATCGCCAGTTC........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CCGTGAACAAACCAG--------CTGAGCATGAGCATCCGATCCC-----------------AATTTCAACTCTGTACTGCGTACAAACACC-TCCG-AATAG---------------------------AAGCAAC-AAAATCATTACACTCCGAATTTCAAA-CCA--ACATCTGCCGCCT--------------------------------------------ACAATTT---ACTAATCCC-ACACCATG-ACAC-------------------------------------------------------------AATCACTCAGAACCCCTTACTAAAGTCTTAACCCATTTT---------------------------------TCCAACC----CACTGCGCAAA-A----AA---AAAAAAAACAGGCGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCACTACCTTCATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCGCCAGTTCAAGC....................1911.00100000000000100000
...................................ATCCGATCCC-----------------AATTTCAACTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGATCGCCAGTT.........................2311.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCCAGTTCAAGCTGCCCAGC............2311.00100010000000000000
...........................................................................................................................................................................................................................................................CATG-ACAC-------------------------------------------------------------AATCACTCAGAACCCC......................................................................................................................................................2411.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACATGGATCGCCAGTTCAAGCTGCC................2911.00101000000000000000
droSec2
A---------------------------------------------------------------------------------------------------------------------------------------CAAAAACCATTACACTCCGAATTTCAAA-CCA--ACATCTGCCGCCT--------------------------------------------ACAATTT---ACTAATCCC-ACACCATG-ACAC-------------------------------------------------------------AATCACTCAGAACCCCTTACTAAAGTCTTAACCCATTGT---------------------------------TCCAACC----CACTGCGCAAA-------A---AAAAAAAACAGGCGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCACTACCTTCATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGATCGCCAGTTCAAG.....................2511.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGATCGCCAGTTCAAGC....................2111.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACTA........2011.0011000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGATCGCCAGTT.........................2311.0011000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGATCGCCAGTTCAAGCTGCC................2711.0011000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCGCCAGTTCAAGCTGCCCA..............2511.0010100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGATCGCCAGTTCAAGCT...................2111.0010100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGATCGCCAGTTCAAG.....................2111.0010010
droYak3
A---------------------------------------------------------------------------------------------------------------------------------------CAAAAATCATTACACTCCGAATTTCAAA-CCA--ACATCCGCCGCCT--------------------------------------------ACAATTT---ACTAATCCC-ACACCATG-ACAC-------------------------------------------------------------AATCACCCAGAACCCCTTACTAAAGATTAAACCCATTGT---------------------------------TCC---C----CA-TGCGCAAA-A----AA---AATATAAACAGGTGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCACTACCTTCATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGATCGCCAGTTCAAGCTGCCC...............2617.00700000000007
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCGCCAGTTCAAGCTGCCC...............2412.00210100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGATCGC..............................1811.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGATCGCCAGTTCAAGCTGCC................2511.00110000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGCTGCCCAGCACTACCT.....2111.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGCAGGACATGGATCGCC.............................2211.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGATCGCCAGTTCAAGCT...................2311.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGACATGGATCGCC.............................1820.50100000010000
droEre2
A---------------------------------------------------------------------------------------------------------------------------------------CAATAATCATTACACTCCGAATTTCAAA-CCA--ACATCTGCCGCCT--------------------------------------------ACAATTT---ACTAATCCC-AAACCATG-ACAC-------------------------------------------------------------AACCATTCA-AACCCCTTACTAAAGTTTTAACCCATTGT---------------------------------TCAAACC----CACTGCGCAAA-A----AA---AAAATAAACAGGTGAGCAGGACATGGACCGCCAGTTCAAGCTGCCCAGCACTACCTTCATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGCTGCCCAGCACTACCTTC...2415.0050000005
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACCGCCAGTTCAAGC....................1911.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGTGAGCAGGACATGGACCGCCA............................2611.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGCAGGACATGGACC................................1911.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTGCCCAGCAC..........1811.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGACCGCCAGTTC........................2211.0010100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGACATGGACCGCCA............................1911.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGCAGGACATGGACCGCCAGT..........................2511.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGACCGCCAGT..........................2211.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGACCGCCA............................1811.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACCGCCAGTTCAAGCTGCCC...............2311.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAGGACATGGACCGCCA............................2211.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCAGGACATGGACCGCCA............................2111.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACT.........1911.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTTCAAGCTGCCCAGC............1911.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTTCAAGCTGCCCA..............1811.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACTACCTTCATC2811.0010100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGCCAGTTCAAGCTGCCCA..............2211.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGCAGGACATGGACCGCCA............................2311.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGACCGCCAGTTCAAGCT...................2311.0011000000

Generated: 05/16/2015 at 11:40 PM