ID:

dvi_19246

 Coordinate:

scaffold_13049:9825511-9825601 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.9 -4.7 -4.2 -4.1

Flybase annnotation

exon [dvir_GLEANR_12057:1]; CDS [Dvir\GJ12060-cds]; CDS [Dvir\GJ12060-cds]; exon [dvir_GLEANR_12057:2]; intron [Dvir\GJ12060-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
mature
star
  1. scaffold_12970:8051836-8051854 +
  2. dvi_19246  scaffold_13049:9825577-9825595 -

Sense Strand Reads

-----------------------------------------#########-------------------------------------------------------------------------------------------##################################################
TGTTTTCGTTCGCCAAACATAACAAACCACCAAACACCAACATGTTGACCGTGAGTAGAAACAAAAAAAAAATATATATACATATATATTAAACTAGGATATCGCCGGAGACTAACTTTGCTCGTTTCTTGTACGCTGCAGTTTGAGGAAATCGTTGAGAAGGCAAAGGCATTCAGCAAGAACGTCACCAA
********************************************************.......................((............((.((......))..)).............))****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 V047
embryo
 M047
female body
 SRR060671
9x160_males_carcasses_total
 SRR1106727
larvae
 SRR1106728
larvae
 SRR060667
160_females_carcasses_total
 SRR1106729
mixed whole adult body
 SRR060659
Argentina_testes_total
 SRR060665
9_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060687
9_0-2h_embryos_total
 V116
male body		 SRR060682
9x140_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 M028
head
 GSM1528803
follicle cells		 SRR060666
160_males_carcasses_total
...............................................................................................................................................TGAGGAAATCGTTGAGAAGGC........................... 21 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TGAGGAAATCGTTGAGAAGGCAAAGGC..................... 27 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ATCGTTGAGAAGGCAAAGGC..................... 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GACCTTTGAGGAAATCGTTGAGAAGGC........................... 27 3 1 3.00 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TTTCGTTCGCCAAACATAACAAA..................................................................................................................................................................... 23 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TTGAGGAAATCGTTGAGAAGGC........................... 22 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TTGAGGAAATCGTTGAGAAGGCAAAGGC..................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TTTCGTTCGCCAAACATAACAAACCACC................................................................................................................................................................ 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AAACCACCAAACACCAACATGT.................................................................................................................................................. 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................AATCGTTGAGAAGGCAAAGGC..................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TTTCGTTCGCCAAACATAACA....................................................................................................................................................................... 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................ATAACAAACCACCAAACACC......................................................................................................................................................... 20 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................AACAAACCACCAAACACCAACA..................................................................................................................................................... 22 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GAAGGCAAAGGCATTCAGCAAGAAC........ 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CAAAGGCATTCAGCAAGAAC........ 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GAAATCGTTGAGAAGGCAAAGGC..................... 23 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TTGAGGAAATCGTTGAGAAGGCAAA........................ 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GTTGAGAAGGCAAAGGCATT.................. 20 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TTTCGTTCGCCAAACATAAC........................................................................................................................................................................ 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CGTTGAGAAGGCAAAGGCTTTCAGC.............. 25 1 1 2.00 2 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....TTCGTTCGCCAAACATAACA....................................................................................................................................................................... 20 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AAATCGTTGAGAAGGCAAAGGC..................... 22 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................CGTTGAGAAGGCAAAGGCATT.................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................CCACCAAACACCAACATGT.................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........TTGCCAAACATAACAAACCACC................................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TGAGAAGGCAAAGGCTTTCAGC.............. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ATCGTTGAGAAGGCAAAGGCATT.................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TTTTGTTCGCCAAACATAACAAACCACC................................................................................................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CACCAAACACCAACATGTTGACC............................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CTTTGAGGAAATCGTTGAGAAGGC........................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GAGGAAATCGTTGAGAAGGCAAAGGC..................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TTTCGTTCGCCAAACATAACAAACCACCA............................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GCCGGAGACTAACTTTGCTCGT.................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................AAACCACCAAACACCAACA..................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ATAGTTGAGAAGGCAAAGGC..................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................ACCACCAAACACCAACATGT.................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CCTTTGAGGAAATCGTTGAGAAGG............................ 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGACCTTTGAGGAAATCGTTGAGAAGGC........................... 28 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AAACTACCAAACACCAACATGTTGACC............................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GGTTTTCGTTCGCCAAACATAAC........................................................................................................................................................................ 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................AGGCATTCAGCAAGAACGT...... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GAGAAGGCAAAGGCATTCA................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
TGTTTTCGTTCGCCAAACATAAC........................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TGAGATGGCAAAGGCTTTCAGCAA............ 24 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ATCGTTTAGAAGGCAAAGGC..................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GACCTTTGAGGAAATCGTTGAGAA.............................. 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGACCTTTGAGGAAATCGTTGAGA............................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GAGGAAATCGTTGAGAAGGC........................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GTTCGCCAAACATAACAAACCACC................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GGAAATCGTTGAGAAGGCAAAGGCATTC................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GAGGAAATCGTTGAGAAGGCAAAGGCATT.................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................AACCACCAAACACCAACATGT.................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................ACCAACATGTTGACCGTGA......................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CACCAAACACCAACATGC.................................................................................................................................................. 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TGTCGTTCGCCAAACATAACAAAC.................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................ACAAACCACCAAACACCAACATGTTGAC.............................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ATCGTTGAGAAGGCAAAGGCA.................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........CGCCAAACATAACAAACCACCA............................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GACCTTTGAGGAAATCGTTGAGAAGG............................ 26 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GAGGAAATCGTTGAGAAGGCAAAGGCTTTCAGCAAGA.......... 37 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GAAATCTTTGAGAAGGCAAAGGC..................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ATCGTTGAGAAGGCAAAGGCATTC................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AGAGTTGAGAAGGCAAAGGCATTC................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGACCTTTGAGGAAATCGTTGAGAAGG............................ 27 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TGAGGAAATCGTTGAGAAGGCCAAGG...................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GGTGAGAAGGCAAAGGCATTC................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GAGAAGGCAAAGGCATTCAGCAA............ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................ACAAACCACCAAACACCAACATGTT................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GAGAAGGCAAAGGCATTC................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................AGAACAAACCACCAAACACCAACATGTT................................................................................................................................................. 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AAACATAACAAACCACCAAACACC......................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................ATAACAAACCACCAAACACCAA....................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ATCGTTGAGAAGGCAAATGC..................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................AATCGTTGAGAAGGCAAA........................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CCTTTGAGGAAATCGTTGAGAAGGCAAA........................ 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GGTTTCGTTCGCCAAACATAAC........................................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GAAATCGTTGAGAAGGCAAAGG...................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GTTTTCGTTCGCCAAACATA.......................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CTTTGAGGAAATCGTTGAGAAGG............................ 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ACTAGGACATCGCCGGACA................................................................................ 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................CGTTGAGAAGGCAAAGGC..................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................CAAACCACCAAACACCAACATGTTGACC............................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CGCTGAGAAGGCAAAGGC..................... 18 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CTTTGAGGAAATCGTTGAGAA.............................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................AGGAAATCGTTGAGAAGGCAAAGGC..................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GTAAATCGTTGAGAAGGC........................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............AGCATAACAAACCACCAAACACCAACAT.................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CAAAGGCATTCAGCAAGAACGT...... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GGAAATCGTTGAGAAGGCAAA........................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TGTCGTTCGCCAAACATAACAAACC................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AAACCACCAAACACCAACATGTTGACC............................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GGAAATCGTTGAGAAGGC........................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTTGGAGAAGGCAAAGGCAT................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CCTTTGAGGAAATCGTTGAGAAGGC........................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GAGAAGGCAAAGGCTTTCAGCAAG........... 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AAAACGTTGAGAAGGCAAAGGC..................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GTAAATCGTTGAGAAGGCAAAGGC..................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TTTGAGGAAATCGTTGAGAAGGCAAA........................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................AGGTAATCGTTGAGAAGGCAAAGGC..................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................AATCGTTGAGAAGGTAAAGGC..................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GGCATTCAGCAAGAACGT...... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TGAGGAAATCGTTGAGAAG............................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ACCTTTGAGGAAATCGTTGAGA............................... 22 3 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CGTTGAGGAAATCGTTGAGA............................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................AGAAACAAAAAAAAAATAT.................................................................................................................... 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GACCTTTGAGGAAATCGTTGAGA............................... 23 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CTTTGAGGAAATCGTTGGGA............................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TTGAGGACATCGTTGAGAGCGC........................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................ATGCAAAGGCATTCAGCA............. 18 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGAGTAGAAACAAAAAATACATAT.................................................................................................................... 25 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................GACTAGGACATCGCCGGACA................................................................................ 20 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................GAGACTAGGACATCGCCGGA.................................................................................. 20 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................GTTTGCGGAAATCGTGAAGAA.............................. 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................CTAATTTTGCTCGTTACT.............................................................. 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................GTTTCTTGTACCCTGGA................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................TTTGATCGGTTCTTGTACC........................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ACAAAAGCAAGCGGTTTGTATTGTTTGGTGGTTTGTGGTTGTACAACTGGCACTCATCTTTGTTTTTTTTTTATATATATGTATATATAATTTGATCCTATAGCGGCCTCTGATTGAAACGAGCAAAGAACATGCGACGTCAAACTCCTTTAGCAACTCTTCCGTTTCCGTAAGTCGTTCTTGCAGTGGTT
******************************************************************.......................((............((.((......))..)).............))******************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060681
Argx9_testes_total
 SRR060668
160x9_males_carcasses_total
 M047
female body
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
........................................GTACAACTGGCACTCATCTTT.................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
...............................................TGGCACTCATCGTTGTTGTAT........................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0
............GGTCTGAATTATTTGGTGG................................................................................................................................................................ 19 3 20 0.15 3 0 0 0 2 1 0
.................ATATTGTTTGGTGGTTGG............................................................................................................................................................ 18 2 13 0.08 1 1 0 0 0 0 0
.........................................TACAACTGCCAATCATCC.................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1
......................GTTTGGTGGTTTAGGGTTG...................................................................................................................................................... 19 2 20 0.05 1 0 0 1 0 0 0
....................................................................................AAAAAATTTGATCCTATAGT....................................................................................... 20 3 20 0.05 1 0 0 0 0 1 0
.....................TGTTTGGTGGTTTAGGGTT....................................................................................................................................................... 19 2 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:9825461-9825651 - dvi_19246 TGTTTTCGTTCGCCAAACATAACAAA-CCAC---CA----A----AC-A---CCAACATGTTGACCGTGAGTAGAAACAAAAAAAAAATATATATACATATATATTAAACTAGGATATC---GC-------------CGGAGA--------C--------------------------------------------TAACTTTGCTCGTTTCTTGTA--C--------GCTGCAGTTTGAGGAAATCGTTGAGAAGGCAAAGGCATTCAGCAAGAACGTCACCAA
droMoj3 scaffold_6680:10950718-10950884 + TGTTTTCGTTAACCAGACACAACAGACCAGC---TA----A----CA-G---CCAACATGGTGAACGTAAGTTAAAATATA------------------------------A---A-------------AAATACGACAA----------A--ATCAGGA---------GG------------------A-----ATAACTTT-CTC--CTATTTTG--C--------GCTGCAGTTTGAGGAAATCGTAGAGAAAGCAAGGAAGTTCAGGGACACTTTAACCAA
droGri2 scaffold_15110:20398247-20398423 - TGTGTTCGTTAGCCAGACATAATAAACCAAT---AA----A----AC-A---CAAACATGTTGACTGTAAGTAGAAATATT------------------------------A---A-------------TTA-ACGATAT----------AATTTGAATA---------TAACCGA-------------A-----ATAACTT-------T--TTTCGAATTCTAATTGTTTGCAGTTTGAGGAAATCGTTGAGAAGGCAAAGAACTTCACCAAGACTGTCAGCAA
droWil2 scf2_1100000004511:9435986-9436151 - T--------TAACCCA--------GCACAAC---AA----AAAACCAAC---CCAAAATGCTGACTGTAAGTTGAAAACTTT-----------------------------ACCAAATCTTTTTA--------GC--CAACGACTA----A----------------------------T-------TGGCTCCAT----TT-GTTTTTTTTTTTTT-----T-----TGCGCAGTTTGAAGAAATCGTTGAGAAGGCCAAGAACTTCAGCAAGGTTCCCAGCAA
dp5 XR_group6:2315244-2315398 - TGTTTTTGTTTCCCAC--------AACCA-C----AACAAT----TT-T---ACAACATGCTGACCGTAAATCT---T---------------------------------CCTACATTTCCATA-------------GAAAT---GCATTTT--------------------A-A---TTTATGCTTC-T------------------C-TCT--------T-----TGAATAGTTTGAGGAGATCGTTGAGAAGGCCAAGTCCCTGAAGAACCCCCCAACCAA
droPer2 scaffold_9:606187-606341 - TGTTTTTGTTTCCCAC--------AACCA-C----AACAAT----TT-T---ACAACATGCTGACCGTAAGTCT---T---------------------------------CCTACATTTCCATA-------------GAAAT---GCATTTT--------------------A-A---TTTATGCTTC-T------------------C-CCT--------T-----TGAATAGTTTGAGGAGATCGTTGAGAAGGCCAAGTCCCTGAAGAACCCCCCAACCAA
droAna3 scaffold_13337:1648689-1648842 + TGTTTGTGTTTGCC----------ACCCAAC---TG----CC-TACT-G---CCAACATGCCCACCGTAAGTTA---A---------------------------------CCGCCCTCGGGCTA--CC----------AA-----GCAGGAC--------------------A-A---TTCATGACCGAA------------------T-TCA--------T-----TACACAGTTTGAGGAGATCGTCGAGAAGGCCAAGAGCTTCAAGAACCTGCCCACCAA
droBip1 scf7180000396544:441551-441704 - TGTTTGTGTTTGCCA----------CTCAACTACCA----A----CT-G---CCAAAATGCCCACCGTAAGTTA---A---------------------------------CCGCCCTCGGGCTA--CC----------AA-----GCAGGAC--------------------A-A---TTACTGATCGAA------------------G-TCA--------T-----TCCACAGTTTGAGGAGATCGTCGAGAAGGCCAAGAGCTTCAAGAACCTGCCCACCAA
droKik1 scf7180000302391:120655-120814 - TGTTTTTGTTTGCCAA--------AACCAAC---TA----ACAAGCT-A---CCAACATGCCCACCGTGAGTTT---T---------------------------------ACACATCC-------------------------CT----TGCCTTTGTAAAATTTCTATAA-----AAT--------------------TT-------TTGTTT-G--TCA------ACTGCAGTTTGAGGAGATCGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCCAGCAA
droFic1 scf7180000453839:1102608-1102759 + TGTTTTTGTTTACCGA--------AACCAAC---TA----G----CC-A---CCAACATGCCCACCGTAAGTTT---T---------------------------------ACATCCCT---AAA-------------CAAAC-CA----ATCGGTTTTA----------------TTAT--------------------TT-------TTTCTGTA-----A-----TTATTAGTTTGAAGAGATCGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCCTCCAA
droEle1 scf7180000491255:317113-317270 - TGTTTTTGTTTACCGA--------AACCGAC---TA----G----CT-G---CCAACATGCCCACCGTAAGTTT---T---------------------------------AAGCTACT---GC-------------TAAAGC-CT----TTCAATTGTC---------TAA----CAAT--------------------TT-------CCCTTTTG--CAAA-----CCTTAAGTTTGAGGAGATCGTCGAGAAGGCCAAGAGCTTCAAGAACCTGCCCACCAA
droRho1 scf7180000779994:13467-13623 + TGTTTTTGTTTACCGA--------AACCAAC---TA----G----CC-A---CCAACATGCCCACCGTAAGTCT---T---------------------------------ACACCACC---AAA------------TG--GC-CT----TTCGATTGTG---------TAA----CAAT--------------------TT-------TCTTTTTG--CATA-----TCTTCAGTTTGAGGAGATCGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCCTCCAA
droBia1 scf7180000302193:6027124-6027280 + TGTTTTTGTTTACCGA--------AACCAAC---TA----G----CT-A---CCAACATGCCCACCGTAAGTTT---T---------------------------------CCAACCCC---AA-CAT----------AAAGC-CG----ATCGATTGTC---------TGA----CAAT--------------------TC-------CGCTTGGG--C--------CTTGCAGTTTGAGGAGATCGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCCAGCAA
droTak1 scf7180000415773:574268-574423 - TGTTTTTGTTTACCGA--------AACCAAC---TA----G----CC-G---CCAACATGCCCACCGTAAGTTT---T---------------------------------ACACCTCT---AAA-------------GGAGC-CG----TTCGATTGTG---------TAA----ATAT--------------------TT-------TTATATTT--C--A-----CCTTCAGTTTGAGGAGATCGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCCAGCAA
droEug1 scf7180000409466:5276638-5276792 + TGTTTTTGTTTACCGA--------AACCAAC---TA----G----CT-A---CCAACATGCCCACCGTAAGTTT---T---------------------------------ACACCATT---AAA----CCTTTCCTTG--------------AATTGTT---------TAA----AAAT--------------------TT-------GTATTTTA-----A-----AACATAGTTTGAGGAGATTGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCCAGCAA
dm3 chr3L:7122013-7122184 + TGTTTTTGTTTGTCGA--------AGCCAAC---TA----GCCAACTAA---CCAACATGCCCACCGTAAGTCT---T---------------------------------ACCCCGCC---AAATAA-TCATCCGATAA----------ATCGTTTGTG---------TAACCAACCAT--------------------TT-------C--TTGGG--CCAA-----CTTACAGTTTGAGGAGATCGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCTAGCAA
droSim2 3l:6988161-6988318 + TGTTTTTGTTTGTCGA--------AACCAAC---TA----G----CC-A---CCAACATGCCCACCGTAAGTTT---T---------------------------------TTTAA-------------TCATCCGATGG----------ATCGTTTGTG---------TAACCAACCAT--------------------TC-------C--CTTGG--CCAA-----CTTACAGTTTGAGGAGATCGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCCAGCAA
droSec2 scaffold_2:7048195-7048352 + TGTTTTTGTTTGTCGA--------AACCAAC---TA----G----CC-A---CCAACATGCCCACCGTAAGTTT---TTTT------------------------------A---A-------------TCATCCGATGG----------ATCGTTTGTG---------TAACCAACCAT--------------------TT-------C--TTTGG--CCAT-----CTTACAGTTTGAGGAGATCGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCCAGCAA
droYak3 3L:7718942-7719106 + TGTTTTTGTTTACCGA--------AACCAAC---TA----GC-AACT-ACCAGCAACATGCCCACCGTAAGTTT---T---------------------------------ACTTGGCC---AAACAA-TTATGCC--------------ATCGTTAGTG---------TAA----CCAT--------------------TT-------C-TTTGTGAAC--------CTTGCAGTTTGAGGAGATCGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCCACCAA
droEre2 scaffold_4784:4225785-4225951 - TGTTTTTGTTTACCGA--------AACCAAC---TA----G----CC-G---CCAACATGCTTACCGTAAGTTT---T---------------------------------ACGCCGCC---AAGCAA-AAATGCG--------------ATTGTTTGTG---------TAA----CCAT--------------------TT-------C-GTTTTGCACCATCCTCGTTTTCAGTTCGAGGAGATCGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCCAGCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGTTTTCGTTCGCCAAACATAACAAA-CCAC---CA----A----AC-A---CCAACATGTTGACCGTGAGTAGAAACAAAAAAAAAATATATATACATATATATTAAACTAGGATATC---GC-------------CGGAGA--------C--------------------------------------------TAACTTTGCTCGTTTCTTGTA--C--------GCTGCAGTTTGAGGAAATCGTTGAGAAGGCAAAGGCATTCAGCAAGAACGTCACCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................TGAGGAAATCGTTGAGAAGGC...........................2113.003000100000000000000000000000000000000000000000000000000000002000
.............................................................................................................................................................................................................................................TGAGGAAATCGTTGAGAAGGCAAAGGC.....................2713.003000300000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................ATCGTTGAGAAGGCAAAGGC.....................2013.003000300000000000000000000000000000000000000000000000000000000000
...TTTCGTTCGCCAAACATAACAAA-..................................................................................................................................................................................................................................................................2313.003000200000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................TTGAGGAAATCGTTGAGAAGGC...........................2212.002000100000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................TTGAGGAAATCGTTGAGAAGGCAAAGGC.....................2812.002000200000000000000000000000000000000000000000000000000000000000
...TTTCGTTCGCCAAACATAACAAA-CCAC---C..........................................................................................................................................................................................................................................................2812.002000200000000000000000000000000000000000000000000000000000000000
.......................AAA-CCAC---CA----A----AC-A---CCAACATGT................................................................................................................................................................................................................................2212.002000200000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................AATCGTTGAGAAGGCAAAGGC.....................2112.002000100000000000000000000000000000000000000000000000000000001000
...TTTCGTTCGCCAAACATAACA.....................................................................................................................................................................................................................................................................2112.002001000000000000000000000000000000000000000000000000000000001000
..................ATAACAAA-CCAC---CA----A----AC-A---CC.......................................................................................................................................................................................................................................2012.002000100000000000000000000000000000000000000000000000000001000000
....................AACAAA-CCAC---CA----A----AC-A---CCAACA...................................................................................................................................................................................................................................2212.002000100000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................GAAGGCAAAGGCATTCAGCAAGAAC........2512.002000200000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................CAAAGGCATTCAGCAAGAAC........2012.002000000000000000000000000000000000000000000000000000000000002000
.................................................................................................................................................................................................................................................GAAATCGTTGAGAAGGCAAAGGC.....................2312.002000100000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................TTGAGGAAATCGTTGAGAAGGCAAA........................2512.002000100000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................GTTGAGAAGGCAAAGGCATT..................2012.002001000000000000000000000000000000000000000000000000000000001000
...TTTCGTTCGCCAAACATAAC......................................................................................................................................................................................................................................................................2012.002000100000000000000000000000000000000000000000000000000000001000
....TTCGTTCGCCAAACATAACA.....................................................................................................................................................................................................................................................................2012.002001100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................AAATCGTTGAGAAGGCAAAGGC.....................2212.002000100000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................CGTTGAGAAGGCAAAGGCATT..................2111.001000100000000000000000000000000000000000000000000000000000000000
...........................CCAC---CA----A----AC-A---CCAACATGT................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................ATCGTTGAGAAGGCAAAGGCATT..................2311.001000100000000000000000000000000000000000000000000000000000000000
............................CAC---CA----A----AC-A---CCAACATGTTGACC...........................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................GAGGAAATCGTTGAGAAGGCAAAGGC.....................2611.001000100000000000000000000000000000000000000000000000000000000000
...TTTCGTTCGCCAAACATAACAAA-CCAC---CA----.....................................................................................................................................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................GC-------------CGGAGA--------C--------------------------------------------TAACTTTGCTCGT............................................................................2211.001000000000100000000000000000000000000000000000000000000000000000
.......................AAA-CCAC---CA----A----AC-A---CCAACA...................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
.........................A-CCAC---CA----A----AC-A---CCAACATGT................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................AGGCATTCAGCAAGAACGT......1911.001000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................GAGAAGGCAAAGGCATTCA................1911.001000000000000000000000000000000000000000000000000000000000001000
TGTTTTCGTTCGCCAAACATAAC......................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................GAGGAAATCGTTGAGAAGGC...........................2011.001000100000000000000000000000000000000000000000000000000000000000
.......GTTCGCCAAACATAACAAA-CCAC---C..........................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000010000000
................................................................................................................................................................................................................................................GGAAATCGTTGAGAAGGCAAAGGCATTC.................2811.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................GAGGAAATCGTTGAGAAGGCAAAGGCATT..................2911.001000100000000000000000000000000000000000000000000000000000000000
........................AA-CCAC---CA----A----AC-A---CCAACATGT................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
................................................A---CCAACATGTTGACCGTGA.......................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
............................CAC---CA----A----AC-A---CCAACATGC................................................................................................................................................................................................................................1811.001000100000000000000000000000000000000000000000000000000000000000
.....................ACAAA-CCAC---CA----A----AC-A---CCAACATGTTGAC............................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................ATCGTTGAGAAGGCAAAGGCA....................2111.001000000000000000000000000000000000000000000000000000000000001000
..........CGCCAAACATAACAAA-CCAC---CA----.....................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................ATCGTTGAGAAGGCAAAGGCATTC.................2411.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GAGAAGGCAAAGGCATTCAGCAA............2311.001001000000000000000000000000000000000000000000000000000000000000
.....................ACAAA-CCAC---CA----A----AC-A---CCAACATGTT...............................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GAGAAGGCAAAGGCATTC.................1811.001000100000000000000000000000000000000000000000000000000000000000
..............AAACATAACAAA-CCAC---CA----A----AC-A---CC.......................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
..................ATAACAAA-CCAC---CA----A----AC-A---CCAA.....................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................AATCGTTGAGAAGGCAAA........................1811.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GAAATCGTTGAGAAGGCAAAGG......................2211.001000000000000000000000000000000000000000000000000000000000001000
.GTTTTCGTTCGCCAAACATA........................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CGTTGAGAAGGCAAAGGC.....................1811.001001000000000000000000000000000000000000000000000000000000000000
......................CAAA-CCAC---CA----A----AC-A---CCAACATGTTGACC...........................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................AGGAAATCGTTGAGAAGGCAAAGGC.....................2511.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................CAAAGGCATTCAGCAAGAACGT......2211.001000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................GGAAATCGTTGAGAAGGCAAA........................2111.001000100000000000000000000000000000000000000000000000000000000000
.......................AAA-CCAC---CA----A----AC-A---CCAACATGTTGACC...........................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................GGAAATCGTTGAGAAGGC...........................1811.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TTTGAGGAAATCGTTGAGAAGGCAAA........................2611.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................GGCATTCAGCAAGAACGT......1811.001000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................TGAGGAAATCGTTGAGAAG.............................1911.001000000000000000000000000000000000000000000000000000000000001000
........................................................................AGAAACAAAAAAAAAATAT..................................................................................................................................................................................................1920.501000100000000000000000000000000000000000000000000000000000000000
droMoj3
TGTTTTCGTTAACCAGACACAACAGACCAGC---TA----A----CA-G---CCAACATGGTGAACGTAAGTTAAAATATA------------------------------A---A-------------AAATACGACAA----------A--ATCAGGA---------GG------------------A-----ATAACTTT-CTC--CTATTTTG--C--------GCTGCAGTTTGAGGAAATCGTAGAGAAAGCAAGGAAGTTCAGGGACACTTTAACCAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..TTTTCGTTAACCAGACACAACA.....................................................................................................................................................................................................................................................................2212.002200000
...............................................................................................................................................................................................................................................................AGCAAGGAAGTTCAGGGAC...........1911.001000001
...TTTCGTTAACCAGACACAACAGACCAG...............................................................................................................................................................................................................................................................2711.001100000
............................................................................................................................................................................................................................................................GAAAGCAAGGAAGTTCAGGGACAC.........2411.001000001
............................................................................................................................................................................................................................................................GAAAGCAAGGAAGTTCAGG..............1911.001000001
.GTTTTCGTTAACCAGACACAACAGA...................................................................................................................................................................................................................................................................2511.001100000
..............................C---TA----A----CA-G---CCAACATGGTGA.............................................................................................................................................................................................................................1911.001100000
.........................................................................................................................................................................................................................................................AGAGAAAGCAAGGAAGTTCAGGGA............2411.001100000
................ACACAACAGACCAGC---TA----A----CA-G---CC.......................................................................................................................................................................................................................................2311.001100000
......CGTTAACCAGACACAACAGA...................................................................................................................................................................................................................................................................2011.001001000
.............CAGACACAACAGACCAGC---T..........................................................................................................................................................................................................................................................1911.001000010
...TTTCGTTAACCAGACACAACAGAC..................................................................................................................................................................................................................................................................2411.001100000
.................................................................................................................................................................................................................................................................CAAGGAAGTTCAGGGACAC.........1911.001100000
...................................................................................................................................................................................................................................................................AGGAAGTTCAGGGACACTTTAACCA.2511.001100000
..................................................................................................................................................................................................................................................................AAGGAAGTTCAGGGACACTTT......2111.001000001
.........TAACCAGACACAACAGACCAG...............................................................................................................................................................................................................................................................2111.001100000
.................CACAACAGACCAGC---TA----A----CA-G---C........................................................................................................................................................................................................................................2111.001000010
droGri2
TGTGTTCGTTAGCCAGACATAATAAACCAAT---AA----A----AC-A---CAAACATGTTGACTGTAAGTAGAAATATT------------------------------A---A-------------TTA-ACGATAT----------AATTTGAATA---------TAACCGA-------------A-----ATAACTT-------T--TTTCGAATTCTAATTGTTTGCAGTTTGAGGAAATCGTTGAGAAGGCAAAGAACTTCACCAAGACTGTCAGCAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................................................................................................................................................................................................................................GAGGAAATCGTTGAGAAGG............................1920.50101
droWil2
T--------TAACCCA--------GCACAAC---AA----AAAACCAAC---CCAAAATGCTGACTGTAAGTTGAAAACTTT-----------------------------ACCAAATCTTTTTA--------GC--CAACGACTA----A----------------------------T-------TGGCTCCAT----TT-GTTTTTTTTTTTTT-----T-----TGCGCAGTTTGAAGAAATCGTTGAGAAGGCCAAGAACTTCAGCAAGGTTCCCAGCAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................GGCCAAGAACTTCAGCAAGGTTCCCAGC..2813.00303000
....................................................................................................................................................................................................................................................ATCGTTGAGAAGGCCAAGAACTTCAGC..............2712.00201010
..............................................................................................................................................................................................................................................GAAGAAATCGTTGAGAAGGCCAAGAACTT..................2912.00200200
............................................................................................................................................................................................................................................TTGAAGAAATCGTTGAGAAGGCC..........................2312.00220000
..................................................................................................................................................................................................................................................................CAAGAACTTCAGCAAGGT.........1812.00200020
.......................................................................................................................................................................................................................................................GTTGAGAAGGCCAAGAACTT..................2012.00201100
...............................................................................................................................................................................................................................................................GGCCAAGAACTTCAGCAAGGT.........2112.00202000
.............................................................................................................................................................................................................................................................AAGGCCAAGAACTTCAGCAAGGT.........2312.00220000
.........................................AAACCAAC---CCAAAATGCTGA.............................................................................................................................................................................................................................2012.00200110
................................................................................................................................................................................................................................................AGAAATCGTTGAGAAGGCCAAG.......................2212.00200200
...................................................................................................................................................................................................................................................AATCGTTGAGAAGGCCAAGA......................2012.00200110
.............................................................................................................................................................................................................................................TGAAGAAATCGTTGAGAAGGC...........................2112.00200200
......................................................................................................................................................................................................................................................CGTTGAGAAGGCCAAGAACTTCAGC..............2511.00101000
.............................................CAAC---CCAAAATGCTGACTT..........................................................................................................................................................................................................................1911.00101000
................................................................................................................................................................................................................................................................GCCAAGAACTTCAGCAAGGTTCCC.....2411.00101000
........................GCACAAC---AA----AAAACCAAC---CC.......................................................................................................................................................................................................................................2011.00101000
...................................................................................................................................................................................................................................................AATCGTTGAGAAGGCCAAGAACTTC.................2511.00100100
..........................................AACCAAC---CCAAAATGCTGA.............................................................................................................................................................................................................................1911.00100010
........................................................................................................................................................................................................................................................................CTTCAGCAAGGTTCCCAG...1811.00100010
..............................................................................................................................................................................................................................................GAAGAAATCGTTGAGAAGGCCAAGAAC....................2711.00100010
.............................................................................................................................................................................................................................................TGAAGAAATCGTTGAGAAGGCCAA........................2411.00101000
............................................................................................................................................................................................................................................TTGAAGAAATCGTTGAGAAGGCCAA........................2511.00101000
..........................................................................................................................................................................................................................................................GAGAAGGCCAAGAACTTCAGCAAGGT.........2611.00100010
....................................................................................................................................................................................................................................................ATCGTTGAGAAGGCCAAGA......................1911.00100100
..................................................................................................................................................................................................................................................................CAAGAACTTCAGCAAGGTTCCCAGC..2511.00101000
.........................................................................................................................................................................................................................................................TGAGAAGGCCAAGAACTTCAGCAAGGT.........2711.00100100
..........................................AACCAAC---CCAAAATGCTGAC............................................................................................................................................................................................................................2011.00100010
.....................................................................................................................................................................................................................................................TCGTTGAGAAGGCCAAGAACTTC.................2311.00101000
...........................................................................................................................................................................................................................................TTTGAAGAAATCGTTGAGAAGGC...........................2311.00100010
...............................................................................................................................................................................................................................................AAGAAATCGTTGAGAAGGC...........................1911.00100100
...................................................................................................................................................................................................................TTTTTT-----T-----TGCGCAGTTTGAAGAAATCGT....................................2811.00100100
..........................................AACCAAC---CCAAAATGCTGACT...........................................................................................................................................................................................................................2111.00101000
...............................................................................................................................................................................................................................................................GGCCAAGAACTTCAGCAAG...........1911.00101000
....................................................................................................................................................................................................................................................ATCGTTGAGAAGGCCAAGAA.....................2011.00100100
.........................................................................................................................................................................................................................................................TGAGAAGGCCAAGAACTTCAGCAAGG..........2611.00101000
...................................................................................................................................................................................................................................................AATCGTTGAGAAGGCCAAGAACTT..................2411.00100010
............................................................................................................................................................................................................................................TTGAAGAAATCGTTGAGAAGGC...........................2211.00100100
.......................................................................................................................................................................................................................................................GTTGAGAAGGCCAAGAAC....................1811.00110000
................................................................................................................................................................................................................................................................GCCAAGAACTTCAGCAAGGTTCCCAGC..2711.00101000
................................................................................................................................................................................................................................................AGAAATCGTTGAGAAGGCCAAGAAC....................2511.00100010
T--------TAACCCA--------GCACAAC---AA----A....................................................................................................................................................................................................................................................1811.00100010
.............................................................................................................................................................................................................................................................AAGGCCAAGAACTTCAGCAAGGTTCCCA....2811.00101000
...........................................................................................................................................................................................................................................TTTGAAGAAATCGTTGAGAAG.............................2111.00100100
..............................................................................................................................................................................................................................................GAAGAAATCGTTGAGAAGGCCAA........................2311.00100100
...................................................................................................................................................................................................................................................AATCGTTGAGAAGGCCAAGAAC....................2211.00100100
.......................................................................................................................................................................................................................................................................ACTTCAGCAAGGTTCCCA....1811.00100010
........................................AAAACCAAC---CCAAAATGCTGACTT..........................................................................................................................................................................................................................2411.00101000
..................................................................................................................................................................................................................................................................CAAGAACTTCAGCAAGGTTCCC.....2211.00101000
...............................................................................................................................................................................................................................................................GGCCAAGAACTTCAGCAAGGTTCCC.....2511.00101000
...................................................................................................................................................................................................................................................AATCGTTGAGAAGGCCAAG.......................1911.00101000
..................................................................................................................................................................................................................................................AAATCGTTGAGAAGGCCAAGAACT...................2411.00100100
...........................CAAC---AA----AAAACCAAC---CCAAAAT..................................................................................................................................................................................................................................2211.00100100
..................................AA----AAAACCAAC---CCAAAATGCTGA.............................................................................................................................................................................................................................2311.00100100
..............................................................................................................................................................................................................................................GAAGAAATCGTTGAGAAGGC...........................2011.00100100
..................................................................................................................................................................................................................................................AAATCGTTGAGAAGGCCAAGA......................2111.00100010
.........................................................................................................................................................................................................................................................TGAGAAGGCCAAGAACTTC.................1911.00101000
.................................................................................................................................................................................................................................................GAAATCGTTGAGAAGGCCAAGAACTT..................2611.00100010
......................................................................................................................................................................................................................................................CGTTGAGAAGGCCAAGAACTTCAGCA.............2611.00101000
.........................................AAACCAAC---CCAAAATGCTGACTT..........................................................................................................................................................................................................................2311.00101000
.........................................AAACCAAC---CCAAAATGCTGACT...........................................................................................................................................................................................................................2211.00101000
...............................................................................................................................................................................................................................................AAGAAATCGTTGAGAAGGCCA.........................2111.00100100
.................................................................................................................................................................................................................................................GAAATCGTTGAGAAGGCCAAGAA.....................2311.00100100
...........................................................................................................................................................................................................................................TTTGAAGAAATCGTTGAGA...............................1911.00101000
....................................................................................................................................................................................................................................................ATCGTTGAGAAGGCCAAGC......................1920.50100100
.............................................................................................................................................................................................................................................TGAAGAAATCGTTGAGAA..............................1830.33101000
dp5
TGTTTTTGTTTCCCAC--------AACCA-C----AACAAT----TT-T---ACAACATGCTGACCGTAAATCT---T---------------------------------CCTACATTTCCATA-------------GAAAT---GCATTTT--------------------A-A---TTTATGCTTC-T------------------C-TCT--------T-----TGAATAGTTTGAGGAGATCGTTGAGAAGGCCAAGTCCCTGAAGAACCCCCCAACCAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................TTTGAGGAGATCGTTGAGAAGGC...........................2319.0090110000007
............................................................................................................................................................................................................................................TTGAGGAGATCGTTGAGAAGGC...........................2217.0070200000005
...................................................................................................................................................................................................................................................GATCGTTGAGAAGGCCAAGTCCCTGAA...............2715.0050310001000
..............................................................................................................................................................................................................................................................AGGCCAAGTCCCTGAAGAACCCCCCAACC..2913.0030000000003
................................................................................................................................................................................................................................................GGAGATCGTTGAGAAGGC...........................1813.0030000000003
..............................................................................................................................................................................................................................................GAGGAGATCGTTGAGAAGGC...........................2013.0030000000003
............................................................................................................................................................................................................................................TTGAGGAGATCGTTGAGA...............................1812.0020000000002
..............................................................................................................................................................................................................................................GAGGAGATCGTTGAGAAG.............................1812.0020100000001
......TGTTTCCCAC--------AACCA-C----AACA......................................................................................................................................................................................................................................................2012.0020110000000
......................................................................................................................................................................................................................................................CGTTGAGAAGGCCAAGTCCCTG.................2211.0010100000000
................................................................................................................................................................................................................................................GGAGATCGTTGAGAAGGCCAAGTCCCT..................2711.0011000000000
...................................AACAAT----TT-T---ACAACATGCTGACC...........................................................................................................................................................................................................................2311.0010010000000
...................................................................................................................................................................................................................................................GATCGTTGAGAAGGCCAAGTCCCTGA................2611.0010100000000
............................................................................................................................................................................................................................................TTGAGGAGATCGTTGAGAAGGCCAAGT......................2711.0010100000000
..........................................................................................................................................................................................................................................................GAGAAGGCCAAGTCCCTGAA...............2011.0010000010000
..............................................................................................................................................................................................................................................GAGGAGATCGTTGAGAAGGCCAAGTCCCT..................2911.0010010000000
..............................................................................................................................................................................................................................................................AGGCCAAGTCCCTGAAGAACCCCCC......2511.0010100000000
........................AACCA-C----AACAAT----TT-T---ACAACATG.................................................................................................................................................................................................................................2311.0010100000000
..........................................................................................................................................................................................................................................................GAGAAGGCCAAGTCCCTGA................1911.0010100000000
..............................................................................................................................................................................................................................................GAGGAGATCGTTGAGAAGGCC..........................2111.0010000000001
.............CAC--------AACCA-C----AACAAT----TT-T---ACAACATGCT...............................................................................................................................................................................................................................2811.0010010000000
..................................................................................................................................................................................................................................................AGATCGTTGAGAAGGCCAAGTCCCTGA................2711.0010100000000
..................................................................................................................................................................................................................................................................CAAGTCCCTGAAGAACCCCC.......2011.0010100000000
.......................................................................................................................................................................................................................................................GTTGAGAAGGCCAAGTCCCTGA................2211.0010100000000
.....................................................................................................................................................................................................................................................TCGTTGAGAAGGCCAAGTCCCTG.................2311.0010100000000
...........................................................................................................................................................................................................................................TTTGAGGAGATCGTTGAGAA..............................2011.0010000000001
...........................................................................................................................................................................................................................................TTTGAGGAGATCGTTGAGA...............................1911.0010000000001
..........................................................................................................................................................................................................................................................GAGAAGGCCAAGTCCCTGAAGAAC...........2411.0010100000000
...................................................................................................................................................................................................................................................GATCGTTGAGAAGGCCAA........................1811.0010100000000
............................................................................................................................................................................................................................................................GAAGGCCAAGTCCCTGAAGAAC...........2211.0010010000000
.............................................................................................................................................................................................................................................................AAGGCCAAGTCCCTGAAGAACCCCC.......2511.0010100000000
.GTTTTTGTTTCCCAC--------AACCA-C----AAC.......................................................................................................................................................................................................................................................2411.0010010000000
................................................................................................................................................................................................................................................GGAGATCGTTGAGAAGGCCAAGTCCCTGA................2911.0010000000001
...TTTTGTTTCCCAC--------AACCA-C----AACAAT----TT-T---.........................................................................................................................................................................................................................................2811.0010100000000
........................AACCA-C----AACAAT----TT-T---ACAACATGCC...............................................................................................................................................................................................................................2511.0010010000000
...................................................................................................................................................................................................................................................GATCGTTGAGAAGGCCAAGTCCCTGAAG..............2811.0010100000000
...........................CA-C----AACAAT----TT-T---ACAACATGCTGACCTC.........................................................................................................................................................................................................................2811.0010010000000
.......................................AT----TT-T---ACAACATGCTGACC...........................................................................................................................................................................................................................1911.0010100000000
......................................................................................................................................................................................................................................................CGTTGAGAAGGCCAAGTCCCTGAAGA.............2611.0010100000000
..................................................................................................................................................................................................................................................AGATCGTTGAGAAGGCCA.........................1811.0010100000000
...........................................................................................................................................................................................................................................TTTGAGGAGATCGTTGAGAAGG............................2211.0010000000001
...................................................................................................................................................................................................................................................GATCGTTGAGAAGGCCAAGTCCCT..................2411.0010100000000
................................................................................................................................................................................................................................................GGAGATCGTTGAGAAGGCC..........................1911.0010000000001
.GTTTTTGTTTCCCAC--------AACCA-C----A.........................................................................................................................................................................................................................................................2211.0010010000000
TGTTTTTGTTTCCCAC--------AACCA-C----AACA......................................................................................................................................................................................................................................................2611.0010010000000
...................................AACAAT----TT-T---ACAACATGCT...............................................................................................................................................................................................................................1911.0010010000000
.......................................................ACATGCTGACCGTAAATCT---T---------------------------------CCTACATT......................................................................................................................................................................2811.0010010000000
.........................ACCA-C----AACAAT----TT-T---ACAACATGCTGACC...........................................................................................................................................................................................................................2811.0010100000000
...................................................................................................................................................................................................................................................GATCGTTGAGAAGGCCAAGTCC....................2211.0010100000000
.......GTTTCCCAC--------AACCA-C----AACA......................................................................................................................................................................................................................................................1911.0010100000000
droPer2
TGTTTTTGTTTCCCAC--------AACCA-C----AACAAT----TT-T---ACAACATGCTGACCGTAAGTCT---T---------------------------------CCTACATTTCCATA-------------GAAAT---GCATTTT--------------------A-A---TTTATGCTTC-T------------------C-CCT--------T-----TGAATAGTTTGAGGAGATCGTTGAGAAGGCCAAGTCCCTGAAGAACCCCCCAACCAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................TTTGAGGAGATCGTTGAGAAGGCC..........................2412.002200000
.......................................................................................................................................................................................................................................................GTTGAGAAGGCCAAGTCCCTGA................2212.002000002
............................................................................................................................................................................................................................................................GAAGGCCAAGTCCCTGAAGAACC..........2311.001100000
................................................................................................................................................................................................................................................................GCCAAGTCCCTGAAGAACCC.........2011.001100000
..................................................................................................................................................................................................................................................................CAAGTCCCTGAAGAACCCCCC......2111.001100000
..................................................................................................................................................................................................................................................................CAAGTCCCTGAAGAACCCC........1911.001100000
...................................................................................................................................................................................................................................................GATCGTTGAGAAGGCCAAGTCCCT..................2411.001001000
...........................................................................................................................................................................................................................................................AGAAGGCCAAGTCCCTGAAGA.............2111.001010000
............................................................................................................................................................................................................................................TTGAGGAGATCGTTGAGAAGGC...........................2211.001100000
......................................AAT----TT-T---ACAACATGCTGACCT..........................................................................................................................................................................................................................2111.001100000
.......................................AT----TT-T---ACAACATGCTGACC...........................................................................................................................................................................................................................1911.001100000
.........................................................................................................................................................................................................................................................................CTGAAGAACCCCCCAACCA.1911.001001000
.GTTTTTGTTTCCCAC--------AACCA-C----..........................................................................................................................................................................................................................................................2111.001001000
............................................................................................................................................................................................................................................TTGAGGAGATCGTTGAGAA..............................1911.001100000
...............................................................................................................................................................................................................................................................GGCCAAGTCCCTGAAGAACC..........2011.001010000
...............................................................................................................................................................................................................................................................GGCCAAGTCCCTGAAGAACCCCCC......2411.001100000
droAna3
TGTTTGTGTTTGCC----------ACCCAAC---TG----CC-TACT-G---CCAACATGCCCACCGTAAGTTA---A---------------------------------CCGCCCTCGGGCTA--CC----------AA-----GCAGGAC--------------------A-A---TTCATGACCGAA------------------T-TCA--------T-----TACACAGTTTGAGGAGATCGTCGAGAAGGCCAAGAGCTTCAAGAACCTGCCCACCAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................C-TACT-G---CCAACATGCCCACC...........................................................................................................................................................................................................................2014.004130000
.......................................................................................................................................................................................................................................................GTCGAGAAGGCCAAGAGCTTCAAGA.............2513.003110010
..............................................................................................................................................................................................................................................................AGGCCAAGAGCTTCAAGAACCTGC.......2412.002011000
.......................................................................................................................................................................................................................................................................GCTTCAAGAACCTGCCCACC..2012.002020000
..........................................................................................................................................................................................................................................................GAGAAGGCCAAGAGCTTCAAGAACC..........2512.002200000
..........................................................................................................................................................................................................................................................GAGAAGGCCAAGAGCTTCAAG..............2112.002100010
.............................................................................................................................................................................................................................................TGAGGAGATCGTCGAGAAGGC...........................2112.002110000
.......GTTTGCC----------ACCCAAC---TG----CC-TACT-G---C........................................................................................................................................................................................................................................2412.002020000
............................................................................................................................................................................................................................................TTGAGGAGATCGTCGAGAAGGC...........................2212.002000020
.....................................................................................................................................................................................................................................................TCGTCGAGAAGGCCAAGAGCTTCAAGA.............2712.002100010
...............................................................................................................................................................................................................................................................GGCCAAGAGCTTCAAGAACCTGCC......2412.002110000
......................................................................................................................................................................................................................................................CGTCGAGAAGGCCAAGAGCTTCAAGA.............2612.002100010
.............C----------ACCCAAC---TG----CC-TACT-G---CCAACATGCCC..............................................................................................................................................................................................................................2812.002020000
.......................................................................................................................................................................................................................................................GTCGAGAAGGCCAAGAGCTT..................2012.002010010
............................................................................................................................................................................................................................................................GAAGGCCAAGAGCTTCAAGAACC..........2312.002010010
..TTTGTGTTTGCC----------ACCCAAC---TG----C....................................................................................................................................................................................................................................................2212.002110000
......................................................................................................................................................................................................................................................CGTCGAGAAGGCCAAGAGCTTC.................2212.002020000
..................................................................................................................................................................................................................................................................CAAGAGCTTCAAGAACCTGCC......2112.002020000
.......................................................................................................................................................................................................................................................GTCGAGAAGGCCAAGAGCTTCA................2212.002200000
.......GTTTGCC----------ACCCAAC---TG----CC-TACT-G---CC.......................................................................................................................................................................................................................................2512.002110000
..............................................................................................................................................................................................A------------------T-TCA--------T-----TACACAGTTTGAGGA..........................................2111.001010000
........................................................................................................................................................................................................................................................................CTTCAAGAACCTGCCCACCAA2111.001100000
..................................................................................................................................................................................................................................................................CAAGAGCTTCAAGAACCTGCCCA....2311.001100000
................................................................................................................................................................................................................................................................GCCAAGAGCTTCAAGAACCTGCCCACC..2711.001100000
...................................................................................................................................................................................................................................................................AAGAGCTTCAAGAACCTGCCCACCA.2511.001100000
...................................................................................................................................................................................................................................................................AAGAGCTTCAAGAACCTGCC......2011.001100000
..................................................................................................................................................................................................................................................AGATCGTCGAGAAGGCCAAGAGCTT..................2511.001000010
..TTTGTGTTTGCC----------ACCCAAC---T..........................................................................................................................................................................................................................................................2011.001010000
...................................................................................................................................................................................................................................................GATCGTCGAGAAGGCCAAG.......................1911.001100000
......................................................................................................................................................................................................................................................CGTCGAGAAGGCCAAGAGCT...................2011.001010000
..............................................................................................................................................................................................................................................................AGGCCAAGAGCTTCAAGAACCT.........2211.001010000
.............................................................................................................................................................................................................................................TGAGGAGATCGTCGAGAAGGCCAAGAG.....................2711.001100000
.............................AC---TG----CC-TACT-G---CCAACATGCCCACC...........................................................................................................................................................................................................................2511.001010000
.........................................C-TACT-G---CCAACATGCCCACCC..........................................................................................................................................................................................................................2111.001010000
................................................................................................................................................................................................................................................................GCCAAGAGCTTCAAGAACCTGCCCACCAA2911.001010000
............................................................................................................................................................................................................................................TTGAGGAGATCGTCGAGAAGG............................2111.001000010
..TTTGTGTTTGCC----------ACCCAAC---TG----CC-..................................................................................................................................................................................................................................................2311.001010000
...............................................................................................................................................................................................................................................................GGCCAAGAGCTTCAAGAACC..........2011.001010000
....................................................................................................................................................................................................................................................ATCGTCGAGAAGGCCAAGAGCTTCA................2511.001100000
...............................................................................................................................................................................................................................................AGGAGATCGTCGAGAAGGCCAAGAG.....................2511.001100000
TGTTTGTGTTTGCC----------ACCC.................................................................................................................................................................................................................................................................1811.001010000
.......................................................................................................................................................................................................................................................GTCGAGAAGGCCAAGAGCT...................1911.001010000
.......................................................................................................................................................................................................................................ACAGTTTGAGGAGATCGTCGAGAA..............................2411.001001000
..........TGCC----------ACCCAAC---TG----CC-TACT-.............................................................................................................................................................................................................................................1911.001100000
..................................................................................................................................................................................................................................................................CAAGAGCTTCAAGAACCTGCCC.....2211.001100000
........................................................................................................................................................................................................................................................................CTTCAAGAACCTGCCCACC..1911.001010000
.............................................................................................................................................................................................................................................TGAGGAGATCGTCGAGAAGGCCAAGA......................2611.001000010
..................................................................................................................................................................................................................................................................CAAGAGCTTCAAGAACCTGCCCAC...2411.001100000
..................................................................................................................................................................................................................................................................CAAGAGCTTCAAGAACCT.........1811.001001000
...........................CAAC---TG----CC-TACT-G---CCAACATGCC...............................................................................................................................................................................................................................2311.001010000
......................................................................................................................................................................................................................................................CGTCGAGAAGGCCAAGAGCTTCAAG..............2511.001100000
...............................................................................................................................................................................................................................................................GGCCAAGAGCTTCAAGAACCTGCCC.....2511.001100000
...................................................................................................................................................................................................................................................GATCGTCGAGAAGGCCAAGAGCTTCAAG..............2811.001100000
.......GTTTGCC----------ACCCAAC---TG----CC-TACT-.............................................................................................................................................................................................................................................2211.001010000
.GTTTGTGTTTGCC----------ACCCAA...............................................................................................................................................................................................................................................................1911.001010000
.....................................................................................................................................................................................................................................ACACAGTTTGAGGAGATCGTCGA.................................2311.001010000
..............................................................................................................................................................................................................................................GAGGAGATCGTCGAGAAGGCCAAGAGC....................2711.001010000
..TTTGTGTTTGCC----------ACCCAAC---...........................................................................................................................................................................................................................................................1911.001100000
.............................................................................................................................................................................................................................................TGAGGAGATCGTCGAGAAGGCCAAGAGC....................2811.001000010
...................................................................................................................................................................................................................................................GATCGTCGAGAAGGCCAA........................1811.001100000
....................................................................................................................................................................................................................................................ATCGTCGAGAAGGCCAAG.......................1811.001100000
.............................................................................A---------------------------------CCGCCCTCGGGCTA--CC----------AA-----GCAGGAC--------------------................................................................................................................2611.001010000
............................................................................................................................................................................................................................................................GAAGGCCAAGAGCTTCAAGA.............2011.001100000
..................................TG----CC-TACT-G---CCAACATGCCCAC............................................................................................................................................................................................................................2211.001010000
...............................................................................................................................................................................................................................................................GGCCAAGAGCTTCAAGAACCTGCCCAC...2711.001010000
.................................................................................................................................................................................................................................................................CCAAGAGCTTCAAGAACCTGCCCAC...2511.001010000
.................................................................................................................................................................................................................................................GAGATCGTCGAGAAGGCCAAGA......................2211.001001000
.....................................................................................................................................................................................................................................................TCGTCGAGAAGGCCAAGAGCTT..................2211.001100000
................................................................................................................................................................................................................................................................GCCAAGAGCTTCAAGAACCTGCCCAC...2611.001100000
...............................................................................................................................................................................................................................................................GGCCAAGAGCTTCAAGAACCTGCCCACC..2811.001010000
.GTTTGTGTTTGCC----------ACCCA................................................................................................................................................................................................................................................................1811.001010000
...................................................................................................................................................................................................................................................................AAGAGCTTCAAGAACCTGCCC.....2111.001010000
....TGTGTTTGCC----------ACCCAAC---T..........................................................................................................................................................................................................................................................1811.001100000
...................................................................................................................................................................................................................................................GATCGTCGAGAAGGCCAAGAG.....................2111.001001000
.............C----------ACCCAAC---TG----CC-TACT-G---CCAACATGC................................................................................................................................................................................................................................2611.001010000
.......GTTTGCC----------ACCCAAC---TG----CC-TACT-G---CCA......................................................................................................................................................................................................................................2611.001100000
...................................................................................................................................................................................................................................................GATCGTCGAGAAGGCCAAGA......................2011.001100000
..............................................................................................................................................................................................................................................................AGGCCAAGAGCTTCAAGAAC...........2011.001010000
.............................AC---TG----CC-TACT-G---CCAACATGCC...............................................................................................................................................................................................................................2111.001100000
..................................TG----CC-TACT-G---CCAACATGCCCACCT..........................................................................................................................................................................................................................2411.001100000
.................................................................................................................................................................................................................................................GAGATCGTCGAGAAGGCCAAGAGCT...................2511.001010000
......................................................................................................................................................................................................................................................................AGCTTCAAGAACCTGCCC.....1811.001010000
.............C----------ACCCAAC---TG----CC-TACT-G---CCA......................................................................................................................................................................................................................................2011.001001000
.......................................................................................................................................................................................................................................................................GCTTCAAGAACCTGCCCACCAA2211.001010000
..........................................................................................................................................................................................................................................................GAGAAGGCCAAGAGCTTCAAGA.............2211.001010000
...................................G----CC-TACT-G---CCAACATGCCCACCTC.........................................................................................................................................................................................................................2411.001010000
..................................TG----CC-TACT-G---CCAACATGCCCACC...........................................................................................................................................................................................................................2311.001010000
...................................................................................................................................................................................................................................................GATCGTCGAGAAGGCCAAGAGC....................2211.001000010
..............................................................................................................................................................................................................................................GAGGAGATCGTCGAGAAGGCCAAGA......................2511.001010000
.............C----------ACCCAAC---TG----CC-TACT-G---CCAAC....................................................................................................................................................................................................................................2211.001010000
................................................................................................................................................................................................................................................GGAGATCGTCGAGAAGGCCAAGAGCTT..................2711.001010000
..........TGCC----------ACCCAAC---TG----CC-TACT-G---CC.......................................................................................................................................................................................................................................2211.001010000
....................................................................................................................................................................................................................................................ATCGTCGAGAAGGCCAAGAGCTTC.................2411.001000010
...................................................................................................................................................................................................................................................GATCGTCGAGAAGGCCAAGAGCTT..................2411.001000010
.......................................................................................................................................................................................................................................................GTCGAGAAGGCCAAGAGC....................1811.001010000
..............................C---TG----CC-TACT-G---CCAACATGCC...............................................................................................................................................................................................................................2011.001100000
............................................................................................................................................................................................................................................................GAAGGCCAAGAGCTTCAAGAACCTGCCC.....2811.001100000
............................................................................................................................................................................................................................................................GAAGGCCAAGAGCTTCAAGAACCTGCC......2711.001010000
..............................................................................................................................................................................................................................................................AGGCCAAGAGCTTCAAGAACCTGCCCAC...2811.001100000
.......................................................................................................................................................................................................................................................GTCGAGAAGGCCAAGAGCTTC.................2111.001000010
.............C----------ACCCAAC---TG----CC-TACT-G---CC.......................................................................................................................................................................................................................................1911.001010000
.......GTTTGCC----------ACCCAAC---TG----CC-TA................................................................................................................................................................................................................................................2011.001010000
..............................C---TG----CC-TACT-G---CCAACATGCCC..............................................................................................................................................................................................................................2111.001010000
.......................................................................................................................................................................................................................................................GTCGAGAAGGCCAAGAGCC...................1920.501010000
droBip1
TGTTTGTGTTTGCCA----------CTCAACTACCA----A----CT-G---CCAAAATGCCCACCGTAAGTTA---A---------------------------------CCGCCCTCGGGCTA--CC----------AA-----GCAGGAC--------------------A-A---TTACTGATCGAA------------------G-TCA--------T-----TCCACAGTTTGAGGAGATCGTCGAGAAGGCCAAGAGCTTCAAGAACCTGCCCACCAASizeHit CountTotal NormTotal
No Reads
droKik1
TGTTTTTGTTTGCCAA--------AACCAAC---TA----ACAAGCT-A---CCAACATGCCCACCGTGAGTTT---T---------------------------------ACACATCC-------------------------CT----TGCCTTTGTAAAATTTCTATAA-----AAT--------------------TT-------TTGTTT-G--TCA------ACTGCAGTTTGAGGAGATCGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCCAGCAASizeHit CountTotal NormTotal
No Reads
droFic1
TGTTTTTGTTTACCGA--------AACCAAC---TA----G----CC-A---CCAACATGCCCACCGTAAGTTT---T---------------------------------ACATCCCT---AAA-------------CAAAC-CA----ATCGGTTTTA----------------TTAT--------------------TT-------TTTCTGTA-----A-----TTATTAGTTTGAAGAGATCGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCCTCCAASizeHit CountTotal NormTotal
No Reads
droEle1
TGTTTTTGTTTACCGA--------AACCGAC---TA----G----CT-G---CCAACATGCCCACCGTAAGTTT---T---------------------------------AAGCTACT---GC-------------TAAAGC-CT----TTCAATTGTC---------TAA----CAAT--------------------TT-------CCCTTTTG--CAAA-----CCTTAAGTTTGAGGAGATCGTCGAGAAGGCCAAGAGCTTCAAGAACCTGCCCACCAASizeHit CountTotal NormTotal
No Reads
droRho1
TGTTTTTGTTTACCGA--------AACCAAC---TA----G----CC-A---CCAACATGCCCACCGTAAGTCT---T---------------------------------ACACCACC---AAA------------TG--GC-CT----TTCGATTGTG---------TAA----CAAT--------------------TT-------TCTTTTTG--CATA-----TCTTCAGTTTGAGGAGATCGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCCTCCAASizeHit CountTotal NormTotal
No Reads
droBia1
TGTTTTTGTTTACCGA--------AACCAAC---TA----G----CT-A---CCAACATGCCCACCGTAAGTTT---T---------------------------------CCAACCCC---AA-CAT----------AAAGC-CG----ATCGATTGTC---------TGA----CAAT--------------------TC-------CGCTTGGG--C--------CTTGCAGTTTGAGGAGATCGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCCAGCAASizeHit CountTotal NormTotal
No Reads
droTak1
TGTTTTTGTTTACCGA--------AACCAAC---TA----G----CC-G---CCAACATGCCCACCGTAAGTTT---T---------------------------------ACACCTCT---AAA-------------GGAGC-CG----TTCGATTGTG---------TAA----ATAT--------------------TT-------TTATATTT--C--A-----CCTTCAGTTTGAGGAGATCGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCCAGCAASizeHit CountTotal NormTotal
No Reads
droEug1
TGTTTTTGTTTACCGA--------AACCAAC---TA----G----CT-A---CCAACATGCCCACCGTAAGTTT---T---------------------------------ACACCATT---AAA----CCTTTCCTTG--------------AATTGTT---------TAA----AAAT--------------------TT-------GTATTTTA-----A-----AACATAGTTTGAGGAGATTGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCCAGCAASizeHit CountTotal NormTotal
No Reads
dm3
TGTTTTTGTTTGTCGA--------AGCCAAC---TA----GCCAACTAA---CCAACATGCCCACCGTAAGTCT---T---------------------------------ACCCCGCC---AAATAA-TCATCCGATAA----------ATCGTTTGTG---------TAACCAACCAT--------------------TT-------C--TTGGG--CCAA-----CTTACAGTTTGAGGAGATCGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCTAGCAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................TTTGAGGAGATCGTCGAGAAGGCC..........................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TTGAGGAGATCGTCGAGAAGGC...........................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000
.............................................................................................................................................................................................................................................TGAGGAGATCGTCGAGAA..............................1812.0020000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CGA--------AGCCAAC---TA----GCCAACTAA---CCAAC....................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AAC---TA----GCCAACTAA---CCAACATGCCCAC............................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGCCAAC---TA----GCCAACTAA---CCAACAT..................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GAGATCGTCGAGAAGGCCAAGA......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGTTTTTGTTTGTCGA--------AGC..................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TTGTCGA--------AGCCAAC---TA----GCCAACT..............................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TTGAGGAGATCGTCGAGAAGGCCAAG.......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........TGTCGA--------AGCCAAC---TA----GCCAAC...............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GCCAAC---TA----GCCAACTAA---CCAAC....................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GAGAAGGCCAAGAACTTC.................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GGCCAAGAACTTCAAGAACCTGCCTAG...2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................AGGCCAAGAACTTCAAGAACC..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TTGTCGA--------AGCCAAC---TA----GCC..................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................AGATCGTCGAGAAGGCCAAGAACTT..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............GA--------AGCCAAC---TA----GCCAACTAA---C........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CGTCGAGAAGGCCAAGAAC....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.......GTTTGTCGA--------AGCCAAC---TA----GCCA.................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GTTTGTCGA--------AGCCAAC---TA----GC...................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TTTGAGGAGATCGTCGAGAA..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
......................................................................................................................................................................................................................................TACAGTTTGAGGAGATCGTCGAGAA..............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..TTTTTGTTTGTCGA--------AGCCAAC---...........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GGCCAAGAACTTCAAGAACCTGC.......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TTTGAGGAGATCGTCGAGA...............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..........TGTCGA--------AGCCAAC---TA----GCCAA................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TTGAGGAGATCGTCGAGA...............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TTGAGGAGATCGTCGAGAA..............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...........GTCGA--------AGCCAAC---TA----GCCAACTAA---CCAA.....................................................................................................................................................................................................................................2711.0010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TTTGTTTGTCGA--------AGCCAAC---T..........................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TTGTCGA--------AGCCAAC---TA----GCCA.................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................ATCGTCGAGAAGGCCAAGAA.....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................................................................................................................................................................................................................GATCGTCGAGAAGGCCAAGAACTTC.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........................................................................................................................................................................................................................................................GAGAAGGCCAAGAACTTCA................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GAGATCGTCGAGAAGGCCAAGAACT...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...TTTTGTTTGTCGA--------AGCCAA...............................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................A-----CTTACAGTTTGAGGATC........................................1860.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGTTTTTGTTTGTCGA--------AACCAAC---TA----G----CC-A---CCAACATGCCCACCGTAAGTTT---T---------------------------------TTTAA-------------TCATCCGATGG----------ATCGTTTGTG---------TAACCAACCAT--------------------TC-------C--CTTGG--CCAA-----CTTACAGTTTGAGGAGATCGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCCAGCAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................TGAGGAGATCGTCGAGAAGGC...........................2117.00700000000000007000
...............................................................................................................................................................................................................................................AGGAGATCGTCGAGAAGGCCA.........................2114.00400000000000004000
..............................................................................................................................................................................................................................................................AGGCCAAGAACTTCAAGAAC...........2013.00300300000000000000
...............................................................................................................................................................................................................................................AGGAGATCGTCGAGAAGGC...........................1912.00200000000000002000
..TTTTTGTTTGTCGA--------AACCAAC---...........................................................................................................................................................................................................................................................2112.00200200000000000000
....TTTGTTTGTCGA--------AACCAAC---T..........................................................................................................................................................................................................................................................2012.00200200000000000000
..............................................................................................................................................................................................................................................................AGGCCAAGAACTTCAAGA.............1811.00100100000000000000
...............................................................................................................................................................................................................................................AGGAGATCGTCGAGAAGGCCATT.......................2311.00100000000000001000
...............................................................................................................................................................................................................................................AGGAGATCGTCGAGAAGG............................1811.00100100000000000000
...TTTTGTTTGTCGA--------AACCAAC---T..........................................................................................................................................................................................................................................................2111.00100100000000000000
..............................................................................................................................................................................................................................................GAGGAGATCGTCGAGAAGGCC..........................2111.00100000000000001000
.......GTTTGTCGA--------AACCAAC---TA----G----CC-A---CC.......................................................................................................................................................................................................................................2411.00100100000000000000
...............................................................................................................................................................................................................................................AGGAGATCGTCGAGAAGGCCAA........................2211.00100000000000001000
................................................................................................................................................................................................................................................GGAGATCGTCGAGAAGGCCAA........................2111.00100000000000001000
............................................................................................................................................................................................................................................TTGAGGAGATCGTCGAGAAGG............................2111.00100000000000001000
................................................................................................................................................................................................................................................GGAGATCGTCGAGAAGGCCATTT......................2311.00100000000000001000
......................................................................................................................................CGATGG----------ATCGTTTGTG---------TAACC...............................................................................................................2111.00100000000000001000
..............................................................................................................................................................................................................................................................AGGCCAAGAACTTCAAGAACCTGCCC.....2611.00100100000000000000
..............................................................................................................................................................................................................................................GAGGAGATCGTCGAGAAGGCCA.........................2211.00100000000000001000
...............................................................................................................................................................................................................................................AGGAGATCGTCGAGAAGGCC..........................2011.00100000000000001000
.................................................................................................................................................................................................................................................GAGATCGTCGAGAAGGCCAAG.......................2111.00100000000000001000
......................................................................................................................................................................................................................................................................AACTTCAAGAACCTGCCA.....1820.50100100000000000000
droSec2
TGTTTTTGTTTGTCGA--------AACCAAC---TA----G----CC-A---CCAACATGCCCACCGTAAGTTT---TTTT------------------------------A---A-------------TCATCCGATGG----------ATCGTTTGTG---------TAACCAACCAT--------------------TT-------C--TTTGG--CCAT-----CTTACAGTTTGAGGAGATCGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCCAGCAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....TTTGTTTGTCGA--------AACCAAC---TA----G----CC-A---CC.......................................................................................................................................................................................................................................2712.0020020
.GTTTTTGTTTGTCGA--------AACC.................................................................................................................................................................................................................................................................1912.0020020
..........TGTCGA--------AACCAAC---TA----G----CC-.............................................................................................................................................................................................................................................1811.0010010
.........TTGTCGA--------AACCAAC---TA----G----CC-A---C........................................................................................................................................................................................................................................2111.0010010
......TGTTTGTCGA--------AACCAAC---TA----G----CC-A---CCAAC....................................................................................................................................................................................................................................2811.0010010
..........................................................................................................................................................................................................................................................................TCAAGAACCTGCCCAGCAA1911.0010010
....TTTGTTTGTCGA--------AACCAAC---T..........................................................................................................................................................................................................................................................2011.0010010
droYak3
TGTTTTTGTTTACCGA--------AACCAAC---TA----GC-AACT-ACCAGCAACATGCCCACCGTAAGTTT---T---------------------------------ACTTGGCC---AAACAA-TTATGCC--------------ATCGTTAGTG---------TAA----CCAT--------------------TT-------C-TTTGTGAAC--------CTTGCAGTTTGAGGAGATCGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCCACCAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....TTTGTTTACCGA--------AACCAAC---T..........................................................................................................................................................................................................................................................2011.00100100000000
...........................................................................................................................................................................A----CCAT--------------------TT-------C-TTTGTGAAC--------CTTGCA...................................................2311.00101000000000
.........................ACCAAC---TA----GC-AACT-ACCAGC.......................................................................................................................................................................................................................................2011.00100100000000
droEre2
TGTTTTTGTTTACCGA--------AACCAAC---TA----G----CC-G---CCAACATGCTTACCGTAAGTTT---T---------------------------------ACGCCGCC---AAGCAA-AAATGCG--------------ATTGTTTGTG---------TAA----CCAT--------------------TT-------C-GTTTTGCACCATCCTCGTTTTCAGTTCGAGGAGATCGTCGAGAAGGCCAAGAACTTCAAGAACCTGCCCAGCAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....TTTGTTTACCGA--------AACCAAC---T..........................................................................................................................................................................................................................................................2016.0061500000
.....TTGTTTACCGA--------AACCAAC---TA----G----CC-G---CC.......................................................................................................................................................................................................................................2612.0021100000
....TTTGTTTACCGA--------AACCAAC---TA----G----CC-G---C........................................................................................................................................................................................................................................2612.0020101000
..........................CCAAC---TA----G----CC-G---CCAACATGCTTACC...........................................................................................................................................................................................................................2512.0020200000
.......GTTTACCGA--------AACCAAC---TA----G----C...............................................................................................................................................................................................................................................2012.0020101000
....TTTGTTTACCGA--------AACCAAC---TA----G----C...............................................................................................................................................................................................................................................2312.0020200000
.....TTGTTTACCGA--------AACCAAC---TA----G----CC-G---C........................................................................................................................................................................................................................................2512.0021100000
....TTTGTTTACCGA--------AACCAAC---TA----G----CC-G---CC.......................................................................................................................................................................................................................................2711.0010100000
..............................................................................................................................AA-AAATGCG--------------ATTGTTTGTG---------TAA----CC...........................................................................................................2411.0010100000
..........TACCGA--------AACCAAC---TA----G----CC-G---CCAAC....................................................................................................................................................................................................................................2411.0010100000
.....................................................................................................................................................................................................................................................TCGTCGAGAAGGCCAAGAACTTC.................2311.0010100000
............CCGA--------AACCAAC---TA----G----CC-G---CCA......................................................................................................................................................................................................................................2011.0010100000
..............................................................................................................................................................................................................................................................AGGCCAAGAACTTCAAGAACCTGCC......2511.0010100000
....TTTGTTTACCGA--------AACCAAC---...........................................................................................................................................................................................................................................................1911.0010100000
........................AACCAAC---TA----G----CC-G---CCAACATGC................................................................................................................................................................................................................................2211.0011000000
......TGTTTACCGA--------AACCAAC---TA----G----CC-.............................................................................................................................................................................................................................................2211.0010100000
..................................................................................................................................................................................................................................................................CAAGAACTTCAAGAACCTGCC......2111.0010100000
..................................................................................................................................................................................................................................................................CAAGAACTTCAAGAACCTGCCC.....2211.0010100000
......TGTTTACCGA--------AACCAAC---TA----G----C...............................................................................................................................................................................................................................................2111.0010100000
.............................................................................................................................................................................................................................................................AAGGCCAAGAACTTCAAGA.............1911.0011000000
......................................................................................................................................................................................................................................................CGTCGAGAAGGCCAAGAACTT..................2111.0010100000
.........TTACCGA--------AACCAAC---TA----G----CC-G---C........................................................................................................................................................................................................................................2111.0010000010
........................................................................................................................................................................................................................................................................CTTCAAGAACCTGCCCAGCAA2111.0011000000
...............................................................................................................................................................................................................................................................GGCCAAGAACTTCAAGAACC..........2011.0010100000
...TTTTGTTTACCGA--------AACCAAC---TA----G----CC-G---C........................................................................................................................................................................................................................................2711.0010100000
.........TTACCGA--------AACCAAC---TA----G----CC-G---.........................................................................................................................................................................................................................................2011.0011000000
.....TTGTTTACCGA--------AACCAAC---TA----G----CC-.............................................................................................................................................................................................................................................2311.0010100000
............................................................................................................................................................................................................................................................GAAGGCCAAGAACTTCAAGAAC...........2211.0011000000
.............CGA--------AACCAAC---TA----G----CC-G---CC.......................................................................................................................................................................................................................................1811.0010100000
.............................................................................................................................................................................................................................................CGAGGAGATCGTCGAGAAGG............................2011.0010000100
......................................................................................................................................................................................................................................................CGTCGAGAAGGCCAAGAACTTCAAGA.............2611.0010001000
..............................................................................................................................................................................................................................................................AGGCCAAGAACTTCAAGAACCT.........2211.0010100000
......................................................................................................................................................................................................................................................................AACTTCAAGAACCTGCCCA....1911.0010001000
............................AAC---TA----G----CC-G---CCAACATGCTTAC............................................................................................................................................................................................................................2211.0011000000
.....................................................................................................................................................................................................................................................................GAACTTCAAGAACCTGCCCAGC..2211.0010100000
.................................................................................................................................................................................................................................................GAGATCGTCGAGAAGGCCAA........................2011.0010000100
.......................................................................................................................................................................................................................................................................ACTTCAAGAACCTGCCCAGC..2011.0010100000

Generated: 05/16/2015 at 10:23 PM