ID:

dvi_19153

 Coordinate:

scaffold_13049:9296859-9297009 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

0.7 0.9 1.0

Flybase annnotation

exon [dvir_GLEANR_13168:7]; CDS [Dvir\GJ13265-cds]; intron [Dvir\GJ13265-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_12723:2175358-2175378 +
  2. scaffold_12726:1592897-1592917 +
  3. scaffold_12855:710454-710474 +
  4. scaffold_12855:6057482-6057502 +
  5. scaffold_12855:8746865-8746885 +
  6. scaffold_12875:9557420-9557440 +
  7. scaffold_12928:5750538-5750558 +
  8. scaffold_12963:919398-919418 +
  9. scaffold_12963:8717684-8717704 +
  10. scaffold_12963:9183337-9183357 +
  11. scaffold_12963:15130184-15130204 +
  12. scaffold_12970:8176790-8176810 +
  13. scaffold_13042:2652227-2652247 +
  14. scaffold_13047:5151740-5151760 +
  15. scaffold_13049:6928648-6928668 +
  16. scaffold_13049:8691979-8691999 +
  17. scaffold_13049:11154453-11154473 +
  18. scaffold_13049:11913401-11913421 +
  19. scaffold_13049:17276154-17276174 +
  20. scaffold_13049:23618966-23618986 +
  21. scaffold_12823:733383-733403 +
  22. scaffold_12855:8718480-8718500 +
  23. scaffold_12928:3921852-3921872 +
  24. scaffold_12928:7662730-7662750 +
  25. scaffold_13047:899738-899758 +
  26. scaffold_13047:9412519-9412539 +
  27. scaffold_13049:401462-401482 +
  28. dvi_19153  scaffold_13049:9296908-9296928 +
  29. scaffold_13049:10421862-10421882 +
  30. scaffold_13246:600829-600849 +
  31. scaffold_13324:1567899-1567919 +
  32. scaffold_12875:3190801-3190821 +
  33. scaffold_12928:631489-631509 +
  34. scaffold_13047:6368228-6368248 +
star
  1. scaffold_8220:464-484 -
  2. scaffold_12723:582922-582942 -
  3. scaffold_12726:1519036-1519056 -
  4. scaffold_12822:901775-901795 -
  5. scaffold_12875:5545254-5545274 -
  6. scaffold_12875:16445058-16445078 -
  7. scaffold_12875:20563021-20563041 -
  8. scaffold_12928:3539392-3539412 -
  9. scaffold_12963:8199254-8199274 -
  10. scaffold_12963:15978067-15978087 -
  11. scaffold_12970:6950492-6950512 -
  12. scaffold_13042:1253433-1253453 -
  13. scaffold_13047:8518362-8518382 -
  14. scaffold_13047:13403366-13403386 -
  15. scaffold_13047:14821889-14821909 -
  16. scaffold_13049:324580-324600 -
  17. scaffold_13049:13903205-13903225 -
  18. scaffold_13049:14774800-14774820 -
  19. scaffold_13049:21221065-21221085 -
  20. scaffold_13246:649974-649994 -
  21. scaffold_12875:16533596-16533616 +
  22. scaffold_12875:18390410-18390430 +
  23. scaffold_12875:18486908-18486928 +
  24. scaffold_12928:38033-38053 +
  25. scaffold_12928:1965237-1965257 +
  26. scaffold_12928:4117257-4117277 +
  27. scaffold_12928:4520263-4520283 +
  28. dvi_9279  scaffold_12928:7494453-7494473 +
  29. scaffold_12932:181085-181105 +
  30. scaffold_12932:435222-435242 +
  31. scaffold_12932:914358-914378 +
  32. scaffold_12970:6592773-6592793 +
  33. scaffold_12970:11763661-11763681 +
  34. scaffold_13042:274682-274702 +
  35. scaffold_13042:3988806-3988826 +
  36. scaffold_13042:4155623-4155643 +
  37. scaffold_13047:17779974-17779994 +
  38. scaffold_13049:491430-491450 +
  39. scaffold_13049:7932931-7932951 +
  40. scaffold_13049:12196485-12196505 +
  41. scaffold_12726:890961-890981 -
  42. scaffold_12758:329553-329573 -
  43. scaffold_12875:7483957-7483977 -
  44. scaffold_12875:14327849-14327869 -
  45. scaffold_12875:14489344-14489364 -
  46. scaffold_12928:3748027-3748047 -
  47. scaffold_12930:32592-32612 -
  48. scaffold_12963:12987884-12987904 -
  49. scaffold_12963:18835709-18835729 -
  50. scaffold_12970:6915995-6916015 -
  51. scaffold_13042:537320-537340 -
  52. scaffold_13042:3720430-3720450 -
  53. scaffold_13047:9534765-9534785 -
  54. scaffold_13047:9680878-9680898 -
  55. scaffold_13047:11668597-11668617 -
  56. scaffold_13047:15139105-15139125 -
  57. scaffold_13047:16943960-16943980 -
  58. scaffold_13049:4907048-4907068 -
  59. scaffold_13049:14402375-14402395 -
  60. scaffold_13049:20628910-20628930 -
  61. scaffold_12472:191172-191192 +
  62. scaffold_12726:1931941-1931961 +
  63. scaffold_12822:2124286-2124306 +
  64. scaffold_12823:1918762-1918782 +
  65. scaffold_12855:2913288-2913308 +
  66. scaffold_12855:9139482-9139502 +
  67. scaffold_12875:3160791-3160811 +
  68. scaffold_12875:17868140-17868160 +
  69. scaffold_12928:2794819-2794839 +
  70. scaffold_12928:4801306-4801326 +
  71. scaffold_12963:3955348-3955368 +
  72. scaffold_12963:7743066-7743086 +
  73. scaffold_12963:18250502-18250522 +
  74. scaffold_12970:3805437-3805457 +
  75. scaffold_13047:7121053-7121073 +
  76. scaffold_13047:18787209-18787229 +
  77. scaffold_13049:2483965-2483985 +
  78. scaffold_13049:5378567-5378587 +
  79. scaffold_13049:7002931-7002951 +
  80. scaffold_13246:1960830-1960850 +
  81. scaffold_12726:375505-375525 +
  82. scaffold_12726:943421-943441 +
  83. scaffold_12822:1227804-1227824 +
  84. scaffold_12822:2604657-2604677 +
  85. scaffold_12875:6910465-6910485 +
  86. scaffold_12875:9220815-9220835 +
  87. scaffold_12928:2258093-2258113 +
  88. scaffold_12928:5710231-5710251 +
  89. scaffold_12928:5719949-5719969 +
  90. scaffold_12928:5723439-5723459 +
  91. scaffold_12932:964762-964782 +
  92. scaffold_12963:8005050-8005070 +
  93. scaffold_12963:9860029-9860049 +
  94. scaffold_12970:11097566-11097586 +
  95. scaffold_13042:2402890-2402910 +
  96. scaffold_13042:4194503-4194523 +
  97. scaffold_13047:10398992-10399012 +
  98. scaffold_13047:11074894-11074914 +
  99. scaffold_13047:16283318-16283338 +
  100. scaffold_13049:5003112-5003132 +
  101. scaffold_12472:422787-422807 +
  102. scaffold_12855:7207781-7207801 +
  103. scaffold_12875:12583270-12583290 +
  104. scaffold_12928:5335941-5335961 +
  105. scaffold_12928:7336127-7336147 +
  106. scaffold_12932:1916598-1916618 +
  107. scaffold_12963:5229873-5229893 +
  108. scaffold_12963:7037846-7037866 +
  109. scaffold_12970:8539116-8539136 +
  110. scaffold_12970:10460739-10460759 +
  111. scaffold_13042:2205503-2205523 +
  112. scaffold_13042:2825519-2825539 +
  113. scaffold_13042:3256089-3256109 +
  114. scaffold_13047:14213796-14213816 +
  115. scaffold_13047:14254054-14254074 +
  116. scaffold_13049:2396906-2396926 +
  117. dvi_19153  scaffold_13049:9296865-9296885 +
  118. scaffold_13049:21179312-21179332 +
  119. scaffold_13246:2430390-2430410 +
  120. scaffold_13324:1586174-1586194 +
  121. scaffold_12822:1617950-1617970 +
  122. scaffold_12822:3712267-3712287 +
  123. scaffold_12875:619579-619599 +
  124. scaffold_12875:2055647-2055667 +
  125. scaffold_12875:6562728-6562748 +
  126. scaffold_12875:12955013-12955033 +
  127. scaffold_12875:14539043-14539063 +
  128. scaffold_12875:14838805-14838825 +
  129. scaffold_12928:7695284-7695304 +
  130. scaffold_12932:1631250-1631270 +
  131. scaffold_12963:15709308-15709328 +
  132. scaffold_12970:1440366-1440386 +
  133. scaffold_12970:1801081-1801101 +
  134. scaffold_12970:8545101-8545121 +
  135. scaffold_12970:10224995-10225015 +
  136. scaffold_13047:8119542-8119562 +
  137. scaffold_13049:5000033-5000053 +
  138. scaffold_13049:5506016-5506036 +
  139. scaffold_13049:14683814-14683834 +
  140. scaffold_13049:16592273-16592293 +
  141. scaffold_12875:1293705-1293725 -
  142. scaffold_12875:12951304-12951324 -
  143. scaffold_12875:15068392-15068412 -
  144. scaffold_12875:15718340-15718360 -
  145. scaffold_12875:17135059-17135079 -
  146. scaffold_12875:17206908-17206928 -
  147. scaffold_12875:18605021-18605041 -
  148. scaffold_12928:440544-440564 -
  149. scaffold_12928:461813-461833 -
  150. scaffold_12928:5094619-5094639 -
  151. scaffold_12928:5110083-5110103 -
  152. scaffold_12963:17247051-17247071 -
  153. scaffold_13003:2012-2032 -
  154. scaffold_13047:8672421-8672441 -
  155. scaffold_13047:9305353-9305373 -
  156. scaffold_13049:4983669-4983689 -
  157. scaffold_13049:7149445-7149465 -
  158. scaffold_13049:8056388-8056408 -
  159. scaffold_13049:11220059-11220079 -
  160. scaffold_13049:12905870-12905890 -
  161. scaffold_329:4564-4584 +
  162. scaffold_4700:1466-1486 +
  163. scaffold_5318:1586-1606 +
  164. scaffold_11642:832-852 +
  165. scaffold_11912:31-51 +
  166. scaffold_12723:3103483-3103503 +
  167. scaffold_12875:7868574-7868594 +
  168. scaffold_12875:17905418-17905438 +
  169. scaffold_12963:5449744-5449764 +
  170. scaffold_12963:5828096-5828116 +
  171. scaffold_12963:6383803-6383823 +
  172. scaffold_12963:7261556-7261576 +
  173. scaffold_12963:14363259-14363279 +
  174. scaffold_12963:17868621-17868641 +
  175. scaffold_12970:1710007-1710027 +
  176. scaffold_12970:4066359-4066379 +
  177. scaffold_13042:2691950-2691970 +
  178. scaffold_13049:16191139-16191159 +
  179. scaffold_13049:19577508-19577528 +
  180. scaffold_13324:1615929-1615949 +
  181. scaffold_4578:1834-1854 +
  182. scaffold_12472:71500-71520 +
  183. scaffold_12472:426047-426067 +
  184. scaffold_12822:2408099-2408119 +
  185. scaffold_12823:1038451-1038471 +
  186. scaffold_12855:5582147-5582167 +
  187. scaffold_12855:9341376-9341396 +
  188. scaffold_12875:8094980-8095000 +
  189. scaffold_12875:14801269-14801289 +
  190. scaffold_12875:16971887-16971907 +
  191. scaffold_12963:6122639-6122659 +
  192. scaffold_12970:1324511-1324531 +
  193. scaffold_12970:1406760-1406780 +
  194. scaffold_13042:1806464-1806484 +
  195. scaffold_13047:4255564-4255584 +
  196. scaffold_13047:8046695-8046715 +
  197. scaffold_13047:15112192-15112212 +
  198. scaffold_13049:2084508-2084528 +
  199. scaffold_13049:7287503-7287523 +
  200. scaffold_13049:22304819-22304839 +
  201. scaffold_10324:207194-207214 -
  202. scaffold_12723:4295007-4295027 -
  203. scaffold_12726:885760-885780 -
  204. scaffold_12758:680870-680890 -
  205. scaffold_12823:1912618-1912638 -
  206. scaffold_12855:2304075-2304095 -
  207. scaffold_12875:6529052-6529072 -
  208. scaffold_12875:11569697-11569717 -
  209. scaffold_12875:13114802-13114822 -
  210. scaffold_12963:1696633-1696653 -
  211. scaffold_12970:6934200-6934220 -
  212. scaffold_12970:8447503-8447523 -
  213. scaffold_12970:10226166-10226186 -
  214. scaffold_13047:15467724-15467744 -
  215. scaffold_13049:125981-126001 -
  216. scaffold_13049:6367214-6367234 -
  217. scaffold_13049:11353250-11353270 -
  218. scaffold_13049:17386091-17386111 -
  219. scaffold_13049:20153900-20153920 -
  220. scaffold_13049:23283600-23283620 -
  221. scaffold_12472:328289-328309 +
  222. scaffold_12726:901496-901516 +
  223. scaffold_12726:1248798-1248818 +
  224. scaffold_12822:2511136-2511156 +
  225. scaffold_12822:3119784-3119804 +
  226. scaffold_12875:13789251-13789271 +
  227. scaffold_12932:452848-452868 +
  228. scaffold_12963:7865391-7865411 +
  229. scaffold_12963:11196758-11196778 +
  230. scaffold_12970:1763768-1763788 +
  231. scaffold_12970:2194170-2194190 +
  232. scaffold_12970:6132528-6132548 +
  233. scaffold_12970:10309662-10309682 +
  234. scaffold_13042:709940-709960 +
  235. scaffold_13042:1683353-1683373 +
  236. scaffold_13047:2573702-2573722 +
  237. scaffold_13047:19032074-19032094 +
  238. scaffold_13049:5727881-5727901 +
  239. scaffold_13049:14190871-14190891 +
  240. scaffold_13049:15818442-15818462 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTATGTATGTATGTCTGTCTGTACGTATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTATGTGTGTGTATGTGTGCGTATGTATGGATGTATATGCATATATGCATGCGATGCATAAGTAAGGCTCGCGTGCTTTCTCGACTTAAAGGAGGAGGTGACCCAGCAGGAGGAGGTGACCCAGCAGGAGGAGGCGACCCA
********************************************************................................................................*********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060672
9x160_females_carcasses_total
 M047
female body
 V116
male body		 SRR060669
160x9_females_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060663
160_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060679
140x9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060659
Argentina_testes_total
 SRR060666
160_males_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060689
160x9_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060670
9_testes_total
 SRR060683
160_testes_total
 SRR060657
140_testes_total
 SRR060658
140_ovaries_total
 SRR060673
9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060687
9_0-2h_embryos_total
 V053
head
......................................................................................................................................................................................................................AGCAGGAGGTGGTGACCCA.................. 19 1 1 7.00 7 3 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGCAGGAGGTGGTGACCC................... 18 1 1 6.00 6 1 3 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TAGCAGGAGGTGGTGACCC................... 19 2 1 4.00 4 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGCAGGAGGTGGTGACCCAAT................ 21 3 2 1.50 3 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GTAGCAGGAGGTGGTGACCCA.................. 21 3 4 1.25 5 0 0 2 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GCAGGAGGTGGTGACCCA.................. 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GAACAAGCAGGAGGTGGTGACCC................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GTAGCAGGAGGTGGTGACCC................... 20 3 9 0.78 7 1 1 0 0 0 1 0 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGCAGGAGGTGGTGTCCCA.................. 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TAGCAGGAGGTGGTGACC.................... 18 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GATGCAAGAGTAAGGCCCGC..................................................................... 20 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TATGTGTGCGTATGTGTGCGTA...................................................................................................................... 22 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................TGTATGTGTGTGTATGTGTGT................................................................................................................................... 21 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0
.............................................................................................................................TGTGTGTATGTATGCATGTATATGC..................................................................................................... 25 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................TGTGTGTGTATGTGTGTGTA.......................................................................................................................................... 20 0 20 0.10 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................GTGTGTGTGTGTGTGTGTGTG.............................................................................................................................................................................. 21 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0
.....................................................................................TGTGTGTGTGTGTGTGTATG.................................................................................................................................................. 20 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TGTGTATGTGTGTGTATGT....................................................................................................................................... 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................TGTATGTGTGTGTGTGTGTG............................................................................................................................................................................................................ 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................TGTGTGTGTGTGTGTGTGTGT................................................................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................TGTGTGTGTGTGTGTGTGTGTGTG.......................................................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................TGTGTGTGTGTGTGTGTGTGTAT................................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................ATGTATGTGTGTGTGTGTG.............................................................................................................................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................GTGTGTGTGTGTGTGTGTGTGT............................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGTGTGTGTGTGTGTGTGTGTG.................................................................................................................................................................................. 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................TGTGTGTGTGTGTGTATGTGT............................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TGTGTGTATGTGTGTGTATG.............................................................................................................................. 20 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TGTATGTGTGTGTATGTGTG.......................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CATACATACATACAGACAGACATGCATACATACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACATACACACACATACACACACATACACACGCATACATACCTACATATACGTATATACGTACGCTACGTATTCATTCCGAGCGCACGAAAGAGCTGAATTTCCTCCTCCACTGGGTCGTCCTCCTCCACTGGGTCGTCCTCCTCCGCTGGGT
***********************************************************************************************************************************................................................................******************************************************** 		Read size # Mismatch Hit Count Total Norm Total M028
head
 M027
male body		 M061
embryo
 M047
female body
 SRR060684
140x9_0-2h_embryos_total
.............................................................................................................................................................................................................................CCTCCACTGGGTCGGCGTCC.......... 20 2 4 2.00 8 5 3 0 0 0
...........................................................................................................................................................................................................CCTCCACTGGGTCGGCGTCC............................ 20 2 4 2.00 8 5 3 0 0 0
..........................................................................................................................................................................................................TCCTCCACTAGGTCGGCCT.............................. 19 2 3 0.33 1 1 0 0 0 0
............................................................................................................................................................................................................................TCCTCCACTGGGTCGGCGTCC.......... 21 2 3 0.33 1 0 1 0 0 0
..........................................................................................................................................................................................................TCCTCCACTGGGTCGGCGTCC............................ 21 2 3 0.33 1 0 1 0 0 0
............................................................................................................................................................................................................................TCCTCCACTAGGTCGGCCT............ 19 2 3 0.33 1 1 0 0 0 0
..........................................................................................................................................................................................................TCCTCCACTGGGTCGGCGTC............................. 20 2 5 0.20 1 1 0 0 0 0
............................................................................................................................................................................................................................TCCTCCACTGGGTCGGCGTC........... 20 2 5 0.20 1 1 0 0 0 0
..........................................................................................................................................................................................................TCCTCCACTAGGTCGGCTTCC............................ 21 3 5 0.20 1 0 0 1 0 0
............................................................................................................................................................................................................................TCCTCCACTAGGTCGGCTTCC.......... 21 3 5 0.20 1 0 0 1 0 0
...........................................................................................................................................................................................................................CTCCTCCACTAGGTCGGC.............. 18 2 7 0.14 1 0 1 0 0 0
.............................................................................................................................................................................................................................CCTCCACTGGGTCGGCGTCCA......... 21 3 7 0.14 1 1 0 0 0 0
.........................................................................................................................................................................................................CTCCTCCACTAGGTCGGC................................ 18 2 7 0.14 1 0 1 0 0 0
...........................................................................................................................................................................................................CCTCCACTGGGTCGGCGTCCA........................... 21 3 7 0.14 1 1 0 0 0 0
..............................................................................................................CATACACACACATACACACG......................................................................................................................... 20 0 9 0.11 1 0 0 0 1 0
...............................................................................................................................................................................................................................TCCACTGGGTCGGCGTCC.......... 18 2 10 0.10 1 1 0 0 0 0
.............................................................................................................................................................................................................TCCACTGGGTCGGCGTCC............................ 18 2 10 0.10 1 1 0 0 0 0
.......................................................................................................................................................................................................TCTTCCTCCACTAGGTCGG................................. 19 3 20 0.05 1 0 0 0 0 1
.........................................................................................................................................................................................................................TCTTCCTCCACTAGGTCGG............... 19 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:9296809-9297059 + dvi_19153 GTATGTATGTATGTCTGTCTGTACGTATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTATGTGTGTGTA------------------------------------TGTGTGCGTATGTATGGATGT--------------------------------------------------------ATATGCATATATGCATGC------------GA---------------------------------------------TGC----------A-----------------------TAAGTAAGGC----------------------TCGCG---------TGCTTTCTCGACTTAAAGGAGGAGGTGACCCAG--------------------CAGGAGGAGGTGACC----------------------------------CAGCAG--GA---------GGAGGCGACCCA
droMoj3 scaffold_6500:30806022-30806212 - ATGTTTGTGTATGTTTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATG------------------------------------TGTATGTATGTATGTGTGTGT----------------------------------------------------------ATGTA---------------------------------TGCCTGTGTGTGCGTGCGTGCGTGTGTGTGTGCGTG----------------------------T-------------------------------------------------TTCT----------------------------------T----------------------------------------------------------------------------------------------------
droGri2 scaffold_15074:3143397-3143636 - ATATGTATATGTATATGTATATGTATATGTATATGTATATGTATATGTATATGTATATGTATATGTATAT------------------------------------GTATATGTATATGTATATGTATATGTATATGTATATGTATATGTATATGTATA------------------------------------TGTATATGTATATGTATATGT--------------------------------------------------------ATATGTATATGTATAT----GTTTATATATGT--------------------------------------------------------------------------------------------------------------------------TT------------------AA----------------GCGTTCAAAGCGTTGCATACTTCAA------------------------------GGCGCGCAAAAACCCA-GAG-----GACGAGATCACTAACAA-GGA
droWil2 scf2_1100000004762:4186041-4186260 + T-GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA------------------------------------CACTCGCGTTCGAATTGGTGC--------------------------------------------------------ATTTACATGCA-----------------------------GGCCT-TGTG--ATCGTG---ACATGTGCGAC---------------------------------------------------------------------------------------------------------------GATGTGTAC-------------------------------------------------------GACGCACGAAGAAGCA-GGAG--CA---------GGAGA---AGTC
dp5 2:9037615-9037803 + ATATATATTTATATGTGTCTGTGGGGGTGTGTTTGTGTGCCTGTGTGTGTGTGTGCGCGGGTGTTTATGT------------------------------------GTG-GTGTGGGTGTGAGTGTGTGTGTGTGTG----------------------------------------------------------------------------------------TCGTGTCGTTTGTTTAGGTGTAAGATATATTATTTATATAGATTTCC--ATTGA---------------------------------TGCCGCACTCGACGAAGCTTCGGCT---------------------------------------------------------------------------------------------------TTCTAAACATAA---------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_34:77743-77911 + TG-TGTTTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------------------------------------GTGTGTGT--------------------------GTGTGCGTGTGTG------------------------------------------------------------------------TAGT-------------------------------------------GTA----AGTGTGG---------------------------------------------------------------TGGAAAAGA-----CACATAGATATTGCGCTCAATTGTGGCTGGC--TGGCTGCTGCCTGAGGGCGGC--------------------------------------GGTG----------------------------------------------------------------------------------------------------------
droAna3 scaffold_13337:2680645-2680850 + GTGCGTGTGTGTGTGCGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGT------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG------------------------------------TGAG--GGTAT----------------------------------------------------CTGAA-GGATTCCT--GGTGC-------------GC------------------TGTTGTATGACATGGAAATGTAATT-----------------------------------------CT---------CTAGT--TAG---CTTTTTGGGGGGGAG---------------------------GCGA---------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395234:29958-30127 - GTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGT------------------------------------ATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTG------------------------------------TATGTGTATG--TG-------TATGTGT-------------------------------------------------ATGTGTATGTGTATGTGTATGTGTATGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302621:392383-392531 + CCATTTATTTTTGTGTGTCCTTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG------------------------------------TGTGTGTGTGTGTGTGTGTGT----------------------------------------------------------GTGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454072:1344212-1344427 - TT-TGTAAGTGTGTGTATGTGTGTGTCTGTGGGTGTTTGTGTCT----T--CTTTA---ATTGTGTTT--TTGCGTCTGTTTGTGTGTTCTCGTGCCCATTTGTCTGT--------------------------GTTTGTG------------------T----ATGTGTATGTGTATGTGTGTGTGTATGTGTG--TA------------------------AGTT--------G------------------------------------------------------------------------------------TG--------------------------GTGA----------G-----------------------TAGCTGGCAATCGAACTCACCTGAAAATGAA--------------------------------------GATGAACAA-------------------------------------------------------GACA--------AGCAGGGAG--AA---------GAAGACGGCCAC
droEle1 scf7180000491193:2026170-2026344 - GTATGTAATTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG------------------------------------TGTGTGTGTG--TG-------TGTGTGT-------------------------------------------------GTGTGTGTGTGTGTGTACATGTATATCTGAGA-----------------------------------------------------------------------------------------------------------------------------C---------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777040:5072-5231 - TA-TACATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------------------------------------GTGTGTGT--------------------G------------------------T----GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG--TG------------------------TGTT--------GGGTTGGGGGTAGT-----------------------ATATACATATATCTCTGC------------GA---------------------------------------------TAA----------TTAAGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301141:1076-1251 + GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGTGTG------------------------------------TGTGTGTGTG--TG-------CGTGTTT-------------------------------------------------GTGTGCGTGTGTGTGTGCGTGTGTGTGTGTG-----------------------------------------------------------------------------------------------------------------------------GC----------------------------------T----------------------------------------------------------------------------------------------------
droTak1 scf7180000415381:115328-115500 - GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG------------------------------------TGTGTGTGTGTGTGTGTGTGT--------------------------------------------------------GTGTGTGTGTGTGT---------------------------------------------------------------TGGCCAGGA-----TAAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000408958:366756-367014 - GCTGGTGATTTATATTGTTTGGCCACATGTGTGTGTGTGTGTGTGTATTCCTGAATATATGCATGTATTG------------------------------------GCCTGTCTCTGTGTGCGTTTGTGTGTGTGTGTGTGTGTGGTCGAGAGTGTCTG------------------------------------AGTGTTAGTG--CG-------AGTG-----T----------GGC-----------------------------------------------------------------AAAGTACAAGCCGCCGTGGCAAGACGCG-----------------------------CG------AG-------------------GCGCAT----------------------CCAAAAATTTCGTTTGC-----------------------------T--------------------GCAAGGGACAGAGTGTGTAATGAAAAATGTGTGGGGTA-----------T---------GACAGGAAAACGAGCGATGCA
dm3 chrX:9426407-9426607 - GTTTTTCAATCTAAATGTCAGCACATGTGCGTGTGTGTATGTCAAAATGGCTGCCAGC-TGTGCGTGC--GTGC--------------------------------GTTAGTATGTGTGTGTGTGTGTGTGTGTGGGTGTACAAGTGTG----------CAAGGCTGCGTATATGT--GTGTGTGTGTGAGTGTG--CG------------------------TGTC--------G------------------------------------------------------------------------------------TG--------------------------G---CAAATTACTCG------AGTGAAGTGCGCACT----------------------TCAAGAACGAAA--------TAGC----------------------------------C----------------------------------------------------------------------------------------------------
droSim2 x:8970667-8970865 - GTTTTTCAATCTAAATGTCAGCACATGTGCGTGTGTGTGTCAAAATGGCTGCCAGC---TGTGCGTGC--GTGC--------------------------------GTTAGTATGTGTGTGGCTGT--GGGTGTGGGTGTACAAGTGTG----------CAAGGCTGCGTGTGTGTGTGTATGTGTGTGAGTGCG--CG------------------------TGTC--------G------------------------------------------------------------------------------------TG--------------------------G---CAAATTACTCG------AGTGAAGTGCGCACT----------------------TCAAGAATGAAA--------TAGC----------------------------------C----------------------------------------------------------------------------------------------------
droSec2 scaffold_10:2911960-2912201 + TTTTGGACCAGTGGCAA--------AATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT--GTGTGTGTGTGTGTG--------------TGTGTGTGTGTGT--------------------G------------------------T----GTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTG--------------------------TG--------TGGC-----------------------------------------------------------------TGAACAGGCGCAGTCGCTGTGAAAGTAG------------------------------------------------------CAAACAGGGC----------------------CCAAG---------GCATTCCTTGAA--AAAGGGGCTGATGTACGCT--------------------CGAAAGGAGAAAGCG----------------------------------CAGAAA--GC---------GGAGAAAGCGCG
droYak3 3R:22854850-22855044 + GTCTATCTGTGTGTCTGTGTATTTGTGTATTTGTGTATCTGTGTGTCTGTGTATCTGTGTATCTGTGTGG------------------------------------CTGTGTATCTGTGTATCTGTGTGTCTGTCTATCTGTGTATCTGTGAATCTGTG------------------------------------TATTTGTGTATCTGTGTAT------------CGT-------------------------------------------GTA----TCTCTTT----------------------------------TC--------------------------A---CGTTCCCTTTA------AATGTTACGCTTGTA-----------------------------------------------------TCTGGACTTAA---------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4784:8561572-8561803 + GTATGTATGTATGTATGTATGTGTGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGT------------------------------------ATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTACATA------------------------------------TGCATG------------------------TT--------G------------------------------------------------------------------------------------TGTAACTACA---ATATTTACATAAATA----------------------------TTTACATT----------------------TTGGAGAAAAAATTGCG---------AGATTTTTCGGTTTAAATT---------ACCA-------------------------------------------------------GGCG--------AACAGGAATTCCA---------GAAGGTGACC--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GTATGTATGTATGTCTGTCTGTACGTATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTATGTGTGTGTA------------------------------------TGTGTGCGTATGTATGGATGT--------------------------------------------------------ATATGCATATATGCATGC------------GA---------------------------------------------TGC----------A-----------------------TAAGTAAGGC----------------------TCGCG---------TGCTTTCTCGACTTAAAGGAGGAGGTGACCCAG--------------------CAGGAGGAGGTGACC----------------------------------CAGCAG--GA---------GGAGGCGACCCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................TGTATGTGTGTGTATGTGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000000000000000000000000000010000000010000000000000000000000000
.................................................................................................................................TGTGTGTGTATGTGTGTGTA................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102000000000000000000000000000000010000000000000000000000000000010
........................................................GTGTGTGTGTGTGT------------------------------------GTGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000000000000000000002000000000000000000000000000000000000000000
.........................................................................................................................TGTGTGTGTGTGTGTGTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................TGTGTATGTGTGTGTATGT.............................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000000000000000000000000000010
...........................TGTATGTGTGTGTGTGTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000010000000000000000000000000000000000000000000000000000000
.....................................................TGTGTGTGTGTGTGTGT------------------------------------GTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000100000000000000000000000000000
.........................................................TGTGTGTGTGTGT------------------------------------GTGTGTGTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................TGTGTGTGTGTGTGTGTGTGTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000001000000000000000000000000000000000000000
..........................ATGTATGTGTGTGTGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000001000000000000000000000000000000000000000000000000000000
......................................................GTGTGTGTGTGTGTGT------------------------------------GTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000001000000000000000000000000000000000000000000000
...................................................TGTGTGTGTGTGTGTGTGT------------------------------------GTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000100
...........................................................................................................................TGTGTGTGTGTGTGTATGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................TGTGTGTATGTGTGTGTA------------------------------------TG................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................TGTATGTGTGTGTA------------------------------------TGTGTG............................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000100000000000000000000000000000000000000000000000000
droMoj3
ATGTTTGTGTATGTTTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATG------------------------------------TGTATGTATGTATGTGTGTGT----------------------------------------------------------ATGTA---------------------------------TGCCTGTGTGTGCGTGCGTGCGTGTGTGTGTGCGTG----------------------------T-------------------------------------------------TTCT----------------------------------T----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................................................ATGTA---------------------------------TGCCTGTGTGTGCG...............................................................................................................................................................................................................................................19200.051100000
droGri2
ATATGTATATGTATATGTATATGTATATGTATATGTATATGTATATGTATATGTATATGTATATGTATAT------------------------------------GTATATGTATATGTATATGTATATGTATATGTATATGTATATGTATATGTATA------------------------------------TGTATATGTATATGTATATGT--------------------------------------------------------ATATGTATATGTATAT----GTTTATATATGT--------------------------------------------------------------------------------------------------------------------------TT------------------AA----------------GCGTTCAAAGCGTTGCATACTTCAA------------------------------GGCGCGCAAAAACCCA-GAG-----GACGAGATCACTAACAA-GGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
T-GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA------------------------------------CACTCGCGTTCGAATTGGTGC--------------------------------------------------------ATTTACATGCA-----------------------------GGCCT-TGTG--ATCGTG---ACATGTGCGAC---------------------------------------------------------------------------------------------------------------GATGTGTAC-------------------------------------------------------GACGCACGAAGAAGCA-GGAG--CA---------GGAGA---AGTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................TGTGTGTGTGTGTGTGTGTGTGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.6513000013
........................................GTGTGTGTGTGTGTGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.15300003
...TGTGTGTGTGTGTGTGTGTGTGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10202000
dp5
ATATATATTTATATGTGTCTGTGGGGGTGTGTTTGTGTGCCTGTGTGTGTGTGTGCGCGGGTGTTTATGT------------------------------------GTG-GTGTGGGTGTGAGTGTGTGTGTGTGTG----------------------------------------------------------------------------------------TCGTGTCGTTTGTTTAGGTGTAAGATATATTATTTATATAGATTTCC--ATTGA---------------------------------TGCCGCACTCGACGAAGCTTCGGCT---------------------------------------------------------------------------------------------------TTCTAAACATAA---------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TG-TGTTTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------------------------------------GTGTGTGT--------------------------GTGTGCGTGTGTG------------------------------------------------------------------------TAGT-------------------------------------------GTA----AGTGTGG---------------------------------------------------------------TGGAAAAGA-----CACATAGATATTGCGCTCAATTGTGGCTGGC--TGGCTGCTGCCTGAGGGCGGC--------------------------------------GGTG----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................TGTGTGTGTGTGTGTGTGTGTGTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.153000003
.........................................................TGTGTGTGTGTGT------------------------------------GTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.153000003
.........................CGTGTGTGTGTGTGTGTGTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000001
..............GTGTGTGTGTGCGTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000001
............................................................................................................GTGTGT--------------------------GTGTGCGTGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000001
....................GTGTGCGTGTGTGTGTGTGTGTGTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
...................TGTGTGCGTGTGTGTGTGTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000
..................GTGTGTGCGTGTGTGTGTGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
........................GCGTGTGTGTGTGTGTGTGTGTGTGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................30200.051000001
droAna3
GTGCGTGTGTGTGTGCGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGT------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG------------------------------------TGAG--GGTAT----------------------------------------------------CTGAA-GGATTCCT--GGTGC-------------GC------------------TGTTGTATGACATGGAAATGTAATT-----------------------------------------CT---------CTAGT--TAG---CTTTTTGGGGGGGAG---------------------------GCGA---------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......GTGTGTGTGCGTGTGTGTGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000011
..................GTGTGTGTGTGTGTTTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102000002
...............................TTTGTGTGTGTGTGTGTGTGTGTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000001
.......................................................................................................................................TGTGTGTGTGTGTGTGTGTGTGTG------------------------------------TGA...............................................................................................................................................................................................................................................................................................................................................................................27200.051000010
...........................................................TTTGTGTGTGT------------------------------------GTGTGTGTGTGTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000001
........................................GTGTGTGTGTGTGTGTGTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
......................................................GTGTGTTTGTGTGTGT------------------------------------GTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000
..........................GTGTGTTTGTGTGTGTGTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000
droBip1
GTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGT------------------------------------ATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTG------------------------------------TATGTGTATG--TG-------TATGTGT-------------------------------------------------ATGTGTATGTGTATGTGTATGTGTATGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CCATTTATTTTTGTGTGTCCTTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG------------------------------------TGTGTGTGTGTGTGTGTGTGT----------------------------------------------------------GTGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TT-TGTAAGTGTGTGTATGTGTGTGTCTGTGGGTGTTTGTGTCT----T--CTTTA---ATTGTGTTT--TTGCGTCTGTTTGTGTGTTCTCGTGCCCATTTGTCTGT--------------------------GTTTGTG------------------T----ATGTGTATGTGTATGTGTGTGTGTATGTGTG--TA------------------------AGTT--------G------------------------------------------------------------------------------------TG--------------------------GTGA----------G-----------------------TAGCTGGCAATCGAACTCACCTGAAAATGAA--------------------------------------GATGAACAA-------------------------------------------------------GACA--------AGCAGGGAG--AA---------GAAGACGGCCACSizeHit CountTotal NormTotal
No Reads
droEle1
GTATGTAATTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG------------------------------------TGTGTGTGTG--TG-------TGTGTGT-------------------------------------------------GTGTGTGTGTGTGTGTACATGTATATCTGAGA-----------------------------------------------------------------------------------------------------------------------------C---------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TA-TACATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------------------------------------GTGTGTGT--------------------G------------------------T----GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG--TG------------------------TGTT--------GGGTTGGGGGTAGT-----------------------ATATACATATATCTCTGC------------GA---------------------------------------------TAA----------TTAAGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGTGTG------------------------------------TGTGTGTGTG--TG-------CGTGTTT-------------------------------------------------GTGTGCGTGTGTGTGTGCGTGTGTGTGTGTG-----------------------------------------------------------------------------------------------------------------------------GC----------------------------------T----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG------------------------------------TGTGTGTGTGTGTGTGTGTGT--------------------------------------------------------GTGTGTGTGTGTGT---------------------------------------------------------------TGGCCAGGA-----TAAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GCTGGTGATTTATATTGTTTGGCCACATGTGTGTGTGTGTGTGTGTATTCCTGAATATATGCATGTATTG------------------------------------GCCTGTCTCTGTGTGCGTTTGTGTGTGTGTGTGTGTGTGGTCGAGAGTGTCTG------------------------------------AGTGTTAGTG--CG-------AGTG-----T----------GGC-----------------------------------------------------------------AAAGTACAAGCCGCCGTGGCAAGACGCG-----------------------------CG------AG-------------------GCGCAT----------------------CCAAAAATTTCGTTTGC-----------------------------T--------------------GCAAGGGACAGAGTGTGTAATGAAAAATGTGTGGGGTA-----------T---------GACAGGAAAACGAGCGATGCASizeHit CountTotal NormTotal
No Reads
dm3
GTTTTTCAATCTAAATGTCAGCACATGTGCGTGTGTGTATGTCAAAATGGCTGCCAGC-TGTGCGTGC--GTGC--------------------------------GTTAGTATGTGTGTGTGTGTGTGTGTGTGGGTGTACAAGTGTG----------CAAGGCTGCGTATATGT--GTGTGTGTGTGAGTGTG--CG------------------------TGTC--------G------------------------------------------------------------------------------------TG--------------------------G---CAAATTACTCG------AGTGAAGTGCGCACT----------------------TCAAGAACGAAA--------TAGC----------------------------------C----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................TGTCAAAATGGCTGCCAGC-TGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TGTGCGTGTGTGTATGTCAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TGTGTGTGGGTGTACAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.......................................................................TGC--------------------------------GTTAGTATGTGTGTGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.5020000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.......................................................................................................................TGTGTGTGTGTGTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................18200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000005000
...................................................................C--GTGC--------------------------------GTTAGTATGTGTGTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TGTGTGTGTGAGTGTG--CG------------------------TGTC--------A------------------------------------------------------------------------------------.....................................................................................................................................................................................................................................................2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................C--GTGC--------------------------------GTTAGTATGTGTGTGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
......................................................................GTGC--------------------------------GTTAGTATGTGTGTGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................GC--GTGC--------------------------------GTTAGTATGTGTGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ATGTGCGTGTGTGTATGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................T--GTGTGTGTGTGAGTGTG--C...............................................................................................................................................................................................................................................................................................................................................................................19200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000100000030000000000000000000000000000
..........................................................................................................................................................................ATATGT--GTGTGTGTGTGAGTGT...................................................................................................................................................................................................................................................................................................................................................................................2250.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
................................................................................................................ATGTGTGTGTGTGTGTGTGTGTGGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2650.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................AGTATGTGTGTGTGTGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................TGTGTGTGTGTGTGTGGGTGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................2270.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...........................................................................................................................................................................TATGT--GTGTGTGTGTGAGTG....................................................................................................................................................................................................................................................................................................................................................................................20110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................GTGTGTGTGAGTGTG--CG------------------------TG....................................................................................................................................................................................................................................................................................................................................................19130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................GTGTGTGTGTGTGGGTGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................19130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
......................................................................................................................................................................................GTGTGTGAGTGTG--CG------------------------TGT...................................................................................................................................................................................................................................................................................................................................................18140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................................................................................TGTGTGTGAGTGTG--CG------------------------TGTC--------T------------------------------------------------------------------------------------.....................................................................................................................................................................................................................................................21140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................................................................TGT--GTGTGTGTGTGAGTGTG--C...............................................................................................................................................................................................................................................................................................................................................................................21150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................TGTGTGTGAGTGTG--CG------------------------TG....................................................................................................................................................................................................................................................................................................................................................18150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................TGTGTGTGTGTGGGTGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................18150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TATGT--GTGTGTGTGTGAGT.....................................................................................................................................................................................................................................................................................................................................................................................19160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................GTGTGTGTGTGTGTGTGTGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.............................................................................................................AGTATGTGTGTGTGTGTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................GTGTGTGTGTGTGTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..........................................................................................................................GTGTGTGTGTGTGGGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...................................................................................................................TGTGTGTGTGTGTGTGTGTGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TGTGTGTGTGTGTGTGTGGGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
droSim2
GTTTTTCAATCTAAATGTCAGCACATGTGCGTGTGTGTGTCAAAATGGCTGCCAGC---TGTGCGTGC--GTGC--------------------------------GTTAGTATGTGTGTGGCTGT--GGGTGTGGGTGTACAAGTGTG----------CAAGGCTGCGTGTGTGTGTGTATGTGTGTGAGTGCG--CG------------------------TGTC--------G------------------------------------------------------------------------------------TG--------------------------G---CAAATTACTCG------AGTGAAGTGCGCACT----------------------TCAAGAATGAAA--------TAGC----------------------------------C----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................TGTGCGTGC--GTGC--------------------------------GTTAGTATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200000000002000000
...............................TGTGTGTGTCAAAATGGCTGCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
...........TAAATGTCAGCACATGTGCGTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
..............................................................................................................GTATGTGTGTGGCTGT--GGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
................................................CTGCCAGC---TGTGCGTGC--G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
...................................................CCAGC---TGTGCGTGC--GTGC--------------------------------GTTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
.........................TGTGCGTGTGTGTGTCAAAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
...........................................................................................................TTAGTATGTGTGTGGCTGT--GG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
...............TGTCAGCACATGTGCGTGTGTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
...............TGTCAGCACATGTGCGTGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
...........TAAATGTCAGCACATGTGCGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
...................................................................................................................................TGTGGGTGTACAAGTGTG----------CAAGGC................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
.................................................................TGC--GTGC--------------------------------GTTAGTATGTGTGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
.................................TGTGTGTCAAAATGGCTGCCAGC---TGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................ATTACTCG------AGTGAAGTGCGCACT----------------------...............................................................................................................................................................2311.00100000000001000000
droSec2
TTTTGGACCAGTGGCAA--------AATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT--GTGTGTGTGTGTGTG--------------TGTGTGTGTGTGT--------------------G------------------------T----GTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTG--------------------------TG--------TGGC-----------------------------------------------------------------TGAACAGGCGCAGTCGCTGTGAAAGTAG------------------------------------------------------CAAACAGGGC----------------------CCAAG---------GCATTCCTTGAA--AAAGGGGCTGATGTACGCT--------------------CGAAAGGAGAAAGCG----------------------------------CAGAAA--GC---------GGAGAAAGCGCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTACGCT--------------------CGAAAGGAG.......................................................................1911.0010010
........................................GTGTGTGTGTGTGTGTGTGTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.2040004
.............................TGTGTGTGTGTGTGTGTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530003
......................................................................................................................................G------------------------T----GTGTGTGTGTGTGTGTGTGTGTG..........................................................................................................................................................................................................................................................................................................................................................................................25200.1530102
...........................................................TGTGTGTGTGT--GTGTGTGTGTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530003
.................................................TGTGTGTGTGTGTGTGTGTGT--G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530300
.............................................................TGTGTGTGT--GTGTGTGTGTGTGTG--------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530003
...................................................TGTGTGTGTGTGTGTGTGT--GTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530300
.........................................................TGTGTGTGTGTGT--GTGTGTGTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530003
.......................................................TGTGTGTGTGTGTGT--GTGTGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530003
.................................................................TGTGT--GTGTGTGTGTGTGTG--------------TGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530003
................................................................................................................GT--------------------G------------------------T----GTGTGTGTGTGTGTGTGTGTG............................................................................................................................................................................................................................................................................................................................................................................................25200.1530102
...............................................................TGTGTGT--GTGTGTGTGTGTGTG--------------TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530003
..........................................................GTGTGTGTGTGT--GTGTGTGTGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020200
....................................................GTGTGTGTGTGTGTGTGT--GTGTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020200
............................................................................................................GTGTGT--------------------G------------------------T----GTGTGTGTGTGTGTGTG................................................................................................................................................................................................................................................................................................................................................................................................25200.1020002
................................................................GTGTGT--GTGTGTGTGTGTGTG--------------T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
........................................................................................................GTGTGTGTGT--------------------G------------------------T----GTGTGTGTGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................25200.1020002
..................................................................GTGT--GTGTGTGTGTGTGTG--------------TGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
..........................................................................GTGTGTGTGTGTG--------------TGTGTGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
..........................................................................................................GTGTGTGT--------------------G------------------------T----GTGTGTGTGTGTGTG..................................................................................................................................................................................................................................................................................................................................................................................................25200.1020002
.............................................................................................................TGTGT--------------------G------------------------T----GTGTGTGTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
..............................................................................GTGTGTGTG--------------TGTGTGTGTGTGT--------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
.......................................................................................................TGTGTGTGTGT--------------------G------------------------T----GTGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
............................................................................GTGTGTGTGTG--------------TGTGTGTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
.....................................................................................................TGTGTGTGTGTGT--------------------G------------------------T----GTGT.............................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
...............................................................................................................TGT--------------------G------------------------T----GTGTGTGTGTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
.............................TGTGTGTGTGTGTGTGTGTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020002
.....................................................................................TG--------------TGTGTGTGTGTGT--------------------G------------------------T----GT...............................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
...........................................................................................................TGTGTGT--------------------G------------------------T----GTGTGTGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
............................GTGTGTGTGTGTGTGTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020200
...................................................................................TGTG--------------TGTGTGTGTGTGT--------------------G------------------------T----.................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
........................................................GTGTGTGTGTGTGT--GTGTGTGTGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020200
........................................................................GTGTGTGTGTGTGTG--------------TGTGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
.........................................................................................................TGTGTGTGT--------------------G------------------------T----GTGTGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
....................................................................GT--GTGTGTGTGTGTGTG--------------TGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
......................................................GTGTGTGTGTGTGTGT--GTGTGTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020200
......................................................................................................GTGTGTGTGTGT--------------------G------------------------T----GTGTGTGTGTG......................................................................................................................................................................................................................................................................................................................................................................................................25200.1020002
..............................................................................................................GTGT--------------------G------------------------T----GTGTGTGTGTGTGTGTGTG..............................................................................................................................................................................................................................................................................................................................................................................................25200.1020002
..........................................................................................................................................................................GTGTGTGTGTGTGTGTGTATGTGT...................................................................................................................................................................................................................................................................................................................................................................................24170.0610100
.................................................TGTGTGTGTGTGTGTGTGTGT--GTGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100
...............................................TGTGTGTGTGTGTGTGTGTGTGT--GTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100
.............................................TGTGTGTGTGTGTGTGTGTGTGTGT--GT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100
.................................................................................................................................................................................TGTGTGTGTGTATGTGTGT.................................................................................................................................................................................................................................................................................................................................................................................19200.0510001
.................................TGTGTGTGTGTGTGTGTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100
.............................TGTGTGTGTGTGTGTGTGTGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0511000
droYak3
GTCTATCTGTGTGTCTGTGTATTTGTGTATTTGTGTATCTGTGTGTCTGTGTATCTGTGTATCTGTGTGG------------------------------------CTGTGTATCTGTGTATCTGTGTGTCTGTCTATCTGTGTATCTGTGAATCTGTG------------------------------------TATTTGTGTATCTGTGTAT------------CGT-------------------------------------------GTA----TCTCTTT----------------------------------TC--------------------------A---CGTTCCCTTTA------AATGTTACGCTTGTA-----------------------------------------------------TCTGGACTTAA---------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GTATGTATGTATGTATGTATGTGTGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGT------------------------------------ATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTACATA------------------------------------TGCATG------------------------TT--------G------------------------------------------------------------------------------------TGTAACTACA---ATATTTACATAAATA----------------------------TTTACATT----------------------TTGGAGAAAAAATTGCG---------AGATTTTTCGGTTTAAATT---------ACCA-------------------------------------------------------GGCG--------AACAGGAATTCCA---------GAAGGTGACC--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................TGTATGTATGTATGTATGTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................21200.1022000000
...TGTATGTATGTATGTATGTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATT---------ACCA-------------------------------------------------------GGCG--------AACAGGA...........................21200.0511000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTAAATT---------ACCA-------------------------------------------------------GGCG--------AAC...............................21200.0511000000
........GTATGTATGTATGTGTGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000000
.........TATGTATGTATGTGTGTATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTTTAAATT---------ACCA-------------------------------------------------------GGCG--------A.................................21200.0511000000

Generated: 05/16/2015 at 09:03 PM