dvi_19145

Name	Class	Family	Strand
TART_DV	LINE	Jockey	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GCTGCTGCTGTTGTTGCTGTGNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAACCATTGTGTCCATCGGCAACAACAGCAAACCACAACAAGCAGCAACAACAACAAACAGCAGCAGCAACAAGCAGCAACAACAACAACAACAGCTACTAGGAATAATGATAACAATGGCCAATTATCATTCAATTCGTTCAATTGCAGTGGCGTCGGCATCACCAACAGCGGCAACGACAACAACCGCGCCAACAACT *************************************************************************************************............((.((........)).))........................((((((((((((..........))))))))..)))).........***************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR1106721 embryo_10-12h	SRR060679 140x9_testes_total	M047 female body	SRR060684 140x9_0-2h_embryos_total	SRR060688 160_ovaries_total	SRR060668 160x9_males_carcasses_total	SRR060681 Argx9_testes_total	SRR060687 9_0-2h_embryos_total	V047 embryo
.................................................................................................................................................................ATAACAATGGCCAATTATCATTCAATTCGTTCAATTG.....................................................	37	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...................................................................................................CAACAACAAACAGCAGCAGCAA..................................................................................................................................	22	0	2	0.50	1	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................CGTTCGATTACGGTGGCGT............................................	19	3	5	0.20	1	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................ATGATAATAACAATGGCCAA............................................................................	20	2	5	0.20	1	0	0	0	1	0	0	0	0	0
..................................................................................................ACAACAAGAAACAGCAGCAGC....................................................................................................................................	21	1	9	0.11	1	0	0	0	0	1	0	0	0	0
............................................................................................................................GCAGCAACAACAACAACAACA..........................................................................................................	21	0	20	0.10	2	0	0	0	0	0	2	0	0	0
..............................................................................................................................................ACCGCAGCTAGGAATAATG..........................................................................................	19	3	17	0.06	1	0	0	0	0	0	0	1	0	0
............................................................................................................................GCAGCAACAACAACAACAACAG.........................................................................................................	22	0	20	0.05	1	0	0	1	0	0	0	0	0	0
........................................................................................................................................ACAAGAACGTCTACTAGGA................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	1	0
...................................................................................................................................................TTCTAGGAGTACTGATAA......................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_13049:9290004-9290254 +	dvi_19145	GCTGCTGCTGTTG----------TTGCT---------------------------------------------------GTGNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAACCATTGTGTCCATCGGCAACAACAGC------AAACC-----------------------------------------------------------------------------------------------ACA----------A------CAAGC-------A------GCAACAACAACA------------------------A--ACAGCAGCAGCAA------CA-------------------------AGCAGCAA------------CAACAACAAC-----AACAGCT------------------------------------------------------------------------------------ACTAGGAATAATGATA---ACA---ATGGC-CAATTATCATTCAAT--------TCGT---------------------TCA-ATT------------------------G---------CAGTGGCGTCGGCATCACCAACAGCG---------GCAACGACAACAACCGCGCC----------------------AACAA--C---------------------------T
droMoj3	scaffold_6680:6060381-6060656 -	dmo_2371	GCTGTTGCTGCTGTCAGCAGCAGTTGCTCGGCGGCTTTGGCTCAGTTTAGTCAACGTCAACACAATTAACCGTTAATTTATC-------------------------ATAATTAACCATTGTGGCT---GA--------------------------------------------------------------------------------CAA-------------------------------------------------------------------------CAACAGCAGCAG---------------------------CAGCAGCAGCAA------TAAC---TAA-----AAACAT------AACAACAA------------CAATAACAAC-----AGCATC-----CAC--------------------------------TCC---------------TAAA---------------------------GGCATAATGATA---ACA---ATGGC-CAATTATCATTCAAT--------TCGT---------------------TCA-ATT------------------------G---------CAGTGGCGTCGGCTTCACCAACAGCC---------GCAACGACAACAACAGCCCC----------------------AACAA--C---------------------------T
droGri2	scaffold_15110:5060592-5060783 +		ATAATTAA-----------------------------------------------------------------------------------------------------------CCATTGTGGCT---GA--------------------------------------------------------------------------------CAGCAG-AAGCAACAACAA---------------------------------------------------------------CAA------------------------------------CCACAC------CAGA---TAC-----------AACAACAACAACAG------------CGACAACAAC-----AACAACA--ATA--------------------------------------------------A---------------------------------------TGCTA---ACA---ATGGC-CAATTATCATTCAAT--------TCG--------------------TTTCA-ATT------------------------G---------CAGTGGCGTCGGCATCAGCAACAGCAGCAGCGCCAACGATGACAACAACAGCACC----------------------AACAA--C---------------------------T
droWil2	scf2_1100000002615:1659-1850 +		CCAGCAGCAGG----------------------------------------------------------------------------------------------------------------------------------A----------------------------------AC-----AGCAACAACAGCAGCAGCAACAA---------------------------------------------------------------------------------------CAACA------------------------ACAGCAGCAGCAACAATATCAACAGCAAC-----------------------------------------AGCAACAAC-----AGCAGCA--GGA-------ACAGCAACAACAGCAGC----------------------------AGCAACAATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-ACA------------------------G---------CAGCAGCAACAGCAACAACAGCAGCA---------GCAGCAGCAACAGCAACAAC----------------------AACAA--C---------------------------T
dp5	XL_group1a:3404994-3405237 -		GCTGCTGCCGT----------------------------------------------------------------------------------------------------------------------------------AACGGCG-------------ATGCCTTCAACATCAGCGGCAG-----------------CAGCAGCAG------------CATTGGCAGCCG--------------CCGAAAAGGCGGAC------TTGGCGGCGAAGGC---------------------------------------------------CAC------CAGCACCAGCAGCGAGAAGAATG---------CCGCCA------------AAGCAGCAGC-----AGCAGCC--ACCGC----AT---------------CA---GAGATCTCATCGGGC---------AGCAGCACCACC-------------------------------------------------------ACCAGC--------ACGA-------------------------------------------------------------GCACGGGCACTAGCAGCAGCAACAGCA---------ACAGCACCAGCAACAGCAGCAGCAGT----------------GAGGC--C---------------------------A
droPer2	scaffold_6:4220233-4220429 +		ATCATCAT-G-------------------------------------------------------------------------------------------------------------------------------CAGC----------------------------------AGC-----AG------------CGGCAGC-------------GCAGCATTACCATCAG--------------CAG----------GC--AGCGCAGC-------AC---------------------------------------------------CACCAC---CACCAGCAGC-----------------------------------------AGCAACAAC-----AGCAGCA--ACAGC-------------------AGCA---GC-------------AACAGCAAC---------------A------------------------GCA---GCAGCA---------------------ACACCTGAA-------------------------------------------------CCACCAT---------------------CATCAGCATCATCA---------TCATCATCACCATCAGCAGCAACAGTTCTTGATGACGCCGACAGCAA--C---------------------------C
droAna3	scaffold_13117:4508381-4508559 -		CA--------------CCA------------------------------------------------------------------------------------------------------------------GCAACAAC----------------------------------AAC-----AGCAGCAACATCAGCTG---------------------------------------------------------------------------------------CAACAGCACCA------------------------ACAACAGTTGCAACAC------C--------------------------AACAGCAG------------CAACAACAGC-----AACAGCA--CCTGC----ATCAGCAAC----------------------------------------AACTGCAGCCACA------------------------T---------CAGCAGC---------------------------------------------------A-A---------------------------------ATGCAACACCATCAGCAGCAACAACAGCA---------GCAGCAGCAGCAACAGCATC----------------------AGCAA--C---------------------------T
droBip1	scf7180000396708:571051-571206 -		GG--CTATAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACACT--CATGATCG----TAGCAACAACAG----------------C----------CCGCC--CCCGC-------A------GCAATCGCAGCAACAGCAGCAGCAACAGCCGACT-GTCAATG-----------------------------------------------------------------GC--------------------------------------------AACA---AC-------------A------------------------------------------------------------------------------------------------------------------ACA-ACA------------------------A------------TAG---CGGCGGCAACAACAACA---------GCAGCAACAGCAACAACCCC----------------------AACAACTC---------------------------C
droKik1	scf7180000302685:196360-196541 +		CA--------------GCA------------------------------------------------------------------------------------------------------------------GCAGCAGC----------------------------------AGC-----AG------------------CATT--TACAGCAG----CAGCAGCAACAG------------------------------------------------------------CATCT------------------------ACAGCAGCAGCAGCAA---CATCACCAGC-----------------------------------------AGCAACAAC-----AACAGCA--TCTAC-------------------AGC----------------------------AGCAACAGCAGC---A------------------------GCT---GCAGCAACATC---------------------------------------------------T-A---------------------------------CAGCAGCAACAGCAGCAGCATCATCTACA---------GCAGCAGCAGCATCTACAGC----------------------AACAG--C---------------------------A
droFic1	scf7180000453342:51187-51379 -		GCTGCTGTTGCTG-------------------------------------------------------------------------------------------------------------------------------TT------------------------------------------G------------CTGCC---GG--G-------GGAGCGATAGAAAGTG--------------AAA----------AC--GAAGCAGC-------A------------GCAG---------------------------------------CAG---------C--------------------------------------------AGCAG----------------CAGCAACGGC----------------GACTACGAC-------------A---ACAAA---------------ATGGCT------ATGAC--------GAACGTACTGCG---------------------GCAAGAAAAATCACATAA----------------------------------------TCGCCGT---------CGACAGCGACGCCAGCGGCAGCAGCA---------GCAACAACAATAAAAGCAAC----------------------AACAA--C---------------------------T
droEle1	scf7180000491214:4832274-4832459 +		GTTGCTGCTGT----------------------------------------------------------------------------------------------------------------------------------T------------------------------------------G------------CTGCCGG-------------GGAGCGATAGAAAGTG--------------AAA----------AC--GAAGCAGC-------A---------------------G------------------------------CAGCAG---------------------------------------------------------------------------CAGCAACGGC----------------GACTACGAC-------------A---ACAAA---------------ATGGCT------ATGAC--------GAACGTACTGCG---------------------GCAAGAAAAATCACATAA----------------------------------------TCGCCGT------CGACAGCGACGTCGGCATCAACAATAGCA---------ACAACAACAGCAGCAGCAGC----------------------AACAA--C---------------------------C
droRho1	scf7180000779204:88027-88205 -		CCATCAACAGC----------------------------------------------------------------------------------------------------------------------------------A------------------------------------------G------------CAGCAACACC--AACAG-------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCAACACCAACAGCAGCAGC-----ATATGCAGCAGCAACAGCAG------------CAGCAACATC----------------AGC-------------------AGC----------------------------AGCAACATCAAC---A------------------------GCA---GCA---GCAGC------------------A------------------------------TCA-ACA------------------------G---------CAGCAGCAGCAGCAGCATCAGCAGCA---------GCAACAACATCAGCAGCAGC----------------------AACAA--C----------------------------
droBia1	scf7180000298389:212969-213145 -		CA--------------ACA------------------------------------------------------------------------------------------------------------------ACAACAAC----------------------------------AGC-----AG------------CAGCAGCAG---------------------------------------------------------------------------------------CAGCA------------------------ACAGCAGCAACAACAA------CAGC--------------------------AGCAGCAACAGCAGCAGCAGCAACAAC-----AGCAACA--GCAGC-------------------AGCA---GC-------------AACA---------------------------------------------------------A----------------CAAC--------ACACCCAACGGT-----------GCG-------------------------------------CAGCAGCAGCAGCAACATCACCAGCAGCA---------ACATCATCAGCAGCAGCAGC----------------------AGCAG--C---------------------------A
droTak1	scf7180000413903:59393-59564 +		CAAACAACAGC----------------------------------------------------------------------------------------------------------------------------------A------------------------------------------G------------CAGCAACAA---------------------------------------------------------------------------------------CAACA------------------------ATAGCAGCAGCAGCAA------CAGC--------------------------AACAACAACAACAGCAGCAGCAACAAC-----AGCAACA--GCAGC-------------------AGCA---GC-------------AACAAC------------------------------------------------------------------------------------ACACCCAACGGT-----------GCGCA-GCA------------------------G---------CAGCAGCAGCAACATCAGCAGCAGCA---------GCAGCAACATCATCAGCAGC----------------------AGCAG--C---------------------------A
droEug1	scf7180000409672:4516121-4516305 -		ATCATCAGGCC------------------------------------------------------------------------------------------------------------------CACCAACAGC----------------------------------------AGCAGCAG-----------------CAGCAAC------------------------AA--------------------------------------C-------AC------CAACAGCAT------------------------------------------------CAGC--------------------------AACAG---------------CAGCAGCAGCAG-------CAGCA----------------------------AC-------------A---ACAAC---------------A------------------------GCA---ACAGCA---------------------ACATCTTCATGCCCAGCAGCTGTTGGCTCAGAGTCA-GTT------------------------G---------CAGCAGCAGCAGCAGCAACAGCAGCA---------GCAACATCATCAGCAGCAAC----------------------AACAG-------------------------------
dm3	chr3L:7824170-7824339 -		CA--------------GCA------------------------------------------------------------------------------------------------------------------GCAGCAAC------AAACC--------------------------------------------------------------------------------------------------------------GCCGCCCTGC-------AC------CATCAGCAA------------------------------------------------CAGCAGC-----------------------------------------AGCATCAACAGCAG-----CA--GCA----------------------------AC-------------A---CCAAC---------------A------------------------GCACCTACAGCA---------------------ACACCATCAAGCGCACCA----------------------------------------TCA---GCATGTCCTGCAGCAGCAGCAGCAGCAGCAACAGCA---------GCACTCCCAGCATCAGCATC----------------------AGCAG--C---------------------------A
droSim2	3l:7655262-7655437 -		CA--------------GCA------------------------------------------------------------------------------------------------------------------GCAGCAAC------AAACC--------------------------------------------------------------------------------------------------------------GCCGCCCTGC-------ACCACCAGCAACAGCAGCAGCAGCAGCAGCA------------TCAACA-----------------------------------------------------------------------------G-----C---------------------------AGCA---AC-------------A---CCAAC---------------A------------------------GCACCTACAGCA---------------------ACACCATCAAGCGCACCA----------------------------------------TCA---GCATGTCCTGCAGCAGCAACAGCAGCAGCAACAGCA---------GCACTCCCAGCATCAGCATC----------------------AGCAG--C---------------------------A
droSec2	scaffold_36:411127-411326 -		ACGATGAA-----------------------------------------------------------------------------------------------------------CCACGT---CCTCAGGCACCAACT-C------AGATC------------------------------------------------------------------------------------------------------------AC--GTACCAGC-------A------GCCACAGCAACA------------------------GTTGCAGCAGCAACCT------CAGC--------------------------AGCAG---------------CAACAGGTG-----TAT-----------------------------GCT---GC----TCC------T---ACACA---------------G-----GCAACCATTAGCAA-------------------------------------------------------------------------------------------------------------------TCC---TGGTGCCCTTCCCGATG---------GCTATGATTTCGTTAAGCCC----------------------GAAAATGCCGAGGCCGCCATTGCCGAGCTGCACAGC
droYak3	X:2572524-2572717 +		CA--------------TCA------------------------------------------------------------------------------------------------------------------GCAGCAGC----------------------------------ATC-----AGCAGCAG------------------------------CATCAGCAGCAG---------------------------------------------------------CATCAACA------------------------GGAGCAACAGCAACGC------CAGC---AGG-----AG------------------------------ATGCAACGTC-----AGCAGCA--ACAGC----AAATGGAAC-------------------TAATCAAGC---------AGCAACGCCAGCAACA------------------------G---------GAGCTGCT---------------ACT------------------------------TCA-ACA------------------------G------------------CAGCAGCAGCAACAGCA---------ACAACATCAGCAGCAACAGCAACTGC----------------GCCAC--C---------------------------A
droEre2	scaffold_4690:13085454-13085712 +		GCTGCTGCTGT----------------------------------------------------------------------------------------------------------------------------------TGCGGCTTATCGTCCCACAAATAACTGCAAATTGTGCGGCAG-----------------CAACTGTAT------------TGTTTGTCCGCGCTTATCTCTGGCCAAAA----------AC--GAAACAAC-------A---------------------GCAATGGCAACGGCCAGTAAATCAGTG----GAACAA------CAGC--------------------------AGCAGCAACAGCAACAGCAGCAGGAGC-----AGCAACA--ACAACGGCA---------------ACTG---GC-------------AACAAA------------------------------------------------------------------------------------CTGCCAGGCAAC-----------ACGCATGCGCCGCCAAAAGTCATGTTCGTG-------------------------------------CC---------A------CAAAGGCGACACC----------------------TAAGC--C---------------------------A

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

GCTGCTGCTGTTG----------TTGCT---------------------------------------------------GTGNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAACCATTGTGTCCATCGGCAACAACAGC------AAACC-----------------------------------------------------------------------------------------------ACA----------A------CAAGC-------A------GCAACAACAACA------------------------A--ACAGCAGCAGCAA------CA-------------------------AGCAGCAA------------CAACAACAAC-----AACAGCT------------------------------------------------------------------------------------ACTAGGAATAATGATA---ACA---ATGGC-CAATTATCATTCAAT--------TCGT---------------------TCA-ATT------------------------G---------CAGTGGCGTCGGCATCACCAACAGCG---------GCAACGACAACAACCGCGCC----------------------AACAA--C---------------------------T	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA---ACA---ATGGC-CAATTATCATTCAAT--------TCGT---------------------TCA-ATT------------------------G---------.................................................................................................................	37	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................CAACAACA------------------------A--ACAGCAGCAGCAA------..................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................GCAGCAA------------CAACAACAAC-----AACA................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................GCAGCAA------------CAACAACAAC-----AACAG...............................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCTGTTGCTGCTGTCAGCAGCAGTTGCTCGGCGGCTTTGGCTCAGTTTAGTCAACGTCAACACAATTAACCGTTAATTTATC-------------------------ATAATTAACCATTGTGGCT---GA--------------------------------------------------------------------------------CAA-------------------------------------------------------------------------CAACAGCAGCAG---------------------------CAGCAGCAGCAA------TAAC---TAA-----AAACAT------AACAACAA------------CAATAACAAC-----AGCATC-----CAC--------------------------------TCC---------------TAAA---------------------------GGCATAATGATA---ACA---ATGGC-CAATTATCATTCAAT--------TCGT---------------------TCA-ATT------------------------G---------CAGTGGCGTCGGCTTCACCAACAGCC---------GCAACGACAACAACAGCCCC----------------------AACAA--C---------------------------T	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

ATAATTAA-----------------------------------------------------------------------------------------------------------CCATTGTGGCT---GA--------------------------------------------------------------------------------CAGCAG-AAGCAACAACAA---------------------------------------------------------------CAA------------------------------------CCACAC------CAGA---TAC-----------AACAACAACAACAG------------CGACAACAAC-----AACAACA--ATA--------------------------------------------------A---------------------------------------TGCTA---ACA---ATGGC-CAATTATCATTCAAT--------TCG--------------------TTTCA-ATT------------------------G---------CAGTGGCGTCGGCATCAGCAACAGCAGCAGCGCCAACGATGACAACAACAGCACC----------------------AACAA--C---------------------------T	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

CCAGCAGCAGG----------------------------------------------------------------------------------------------------------------------------------A----------------------------------AC-----AGCAACAACAGCAGCAGCAACAA---------------------------------------------------------------------------------------CAACA------------------------ACAGCAGCAGCAACAATATCAACAGCAAC-----------------------------------------AGCAACAAC-----AGCAGCA--GGA-------ACAGCAACAACAGCAGC----------------------------AGCAACAATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-ACA------------------------G---------CAGCAGCAACAGCAACAACAGCAGCA---------GCAGCAGCAACAGCAACAAC----------------------AACAA--C---------------------------T	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................................................................................................................................................................................................................................................................................CAAC-----AGCAGCA--GGA-------ACAGCAACAAC......................................................................................................................................................................................................................................................................................................	25	3	0.67	2	0	0	0	2	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-A.....................................................................................................................................................	23	20	0.60	12	0	12	0	0	0
................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCAAC-----------------------------------------AGCAACAA..........................................................................................................................................................................................................................................................................................................................................	23	20	0.60	12	0	12	0	0	0
................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCAAC-----------------------------------------AGCAACA...........................................................................................................................................................................................................................................................................................................................................	22	20	0.45	9	0	9	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-......................................................................................................................................................	22	20	0.45	9	0	9	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-AC....................................................................................................................................................	24	20	0.25	5	0	5	0	0	0
................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCAAC-----------------------------------------AGCAACAAC-----AGC.................................................................................................................................................................................................................................................................................................................................	27	20	0.25	5	0	5	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-ACA------------------------G---------C................................................................................................................	27	20	0.25	5	0	5	0	0	0
.........................................................................................................................................................................................................AACAA---------------------------------------------------------------------------------------CAACA------------------------ACAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.25	5	0	0	0	5	0
...........................................................................................................................................................................................................................................................................................................................................................................................................AACAAC-----AGCAGCA--GGA-------ACAGCAACA........................................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCAAC-----------------------------------------AGCAACAAC-----....................................................................................................................................................................................................................................................................................................................................	24	20	0.25	5	0	5	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-ACA------------------------G---------.................................................................................................................	26	20	0.20	4	0	3	0	1	0
................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCAAC-----------------------------------------AGCAACAAC-----AG..................................................................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	3	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAAC-----AGCAGCA--GGA-------ACAGCA...........................................................................................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0
...........................................................................................................................................................................................................CAA---------------------------------------------------------------------------------------CAACA------------------------ACAGCAGCAGCAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................	25	6	0.17	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---G---CAACAGC------------------A------------------------------ACA-ACA------------------------G---------CAGCAG...........................................................................................................	23	20	0.15	3	0	3	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAACAGCAGCA---------G.............................................................................	23	20	0.15	3	0	3	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................AGCAAC-----------------------------------------AGCAACAAC-----AGCAGCA--G..........................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	3	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-ACA------------------------...........................................................................................................................	25	20	0.15	3	0	3	0	0	0
................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCAAC-----------------------------------------AGCAACAAC-----A...................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	3	0	0	0
............................................................................................................................................................................................................AA---------------------------------------------------------------------------------------CAACA------------------------ACAGCAGCAGCAAC..........................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	3	0
.............................................................................................................................................................................................................................................................................................................................................................AC-----------------------------------------AGCAACAAC-----AGCAGCA--GG.........................................................................................................................................................................................................................................................................................................................	20	8	0.13	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCAAC-----------------------------------------AGCAACAAC-----AGCAG...............................................................................................................................................................................................................................................................................................................................	29	19	0.11	2	0	2	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-ACA------------------------G---------CAG..............................................................................................................	29	19	0.11	2	0	2	0	0	0
.................................................................................................................................................................................C-----AGCAACAACAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	2	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------------------------G---------CAGCAGCAACAGCA...................................................................................................	18	20	0.10	2	0	0	0	2	0
....................................................................................................................................................................................................GCAGCAACAA---------------------------------------------------------------------------------------CAACA------------------------ACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-ACA------------------------G---------CA...............................................................................................................	28	20	0.10	2	0	2	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-......................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------AC........................................................................................................................................................	21	20	0.10	2	0	2	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-ACA------------------------G---------.................................................................................................................	23	20	0.10	2	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAGCAGC----------------------------AGC.................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	2	0
........................................................................................................................................................................................................CAACAA---------------------------------------------------------------------------------------CAACA------------------------ACAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	2	0	0
.............................................................................................................................................................................................................................................................................................................................................AACAATATCAACAGCAAC-----------------------------------------AGCAACA...........................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ATCAACAGCAAC-----------------------------------------AGCAACAAC-----AGCA................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCAAC-----------------------------------------AGCAACAAC-----AGCA................................................................................................................................................................................................................................................................................................................................	28	20	0.10	2	0	2	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ATCAACAGCAAC-----------------------------------------AGCAACAAC-----AG..................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAGCAGCA---------GC............................................................................	19	20	0.10	2	0	0	0	2	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-ACA------------------------G---------CA...............................................................................................................	25	20	0.10	2	0	2	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---------GCAGCAGCAACAGCAACAA...........................................................	23	20	0.10	2	0	0	0	2	0
..AGCAGCAGG----------------------------------------------------------------------------------------------------------------------------------A----------------------------------AC-----AGCAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	12	0.08	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA--GGA-------ACAGCAACA........................................................................................................................................................................................................................................................................................................	19	12	0.08	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................A------------------------ACAGCAGCAGCAACAATATCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................	26	16	0.06	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGC----------------------------AGCAACAATATCA---------------------------ACA---G---..................................................................................................................................................................................................................	26	16	0.06	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAACAATATCAAC.................................................................................................................................................................................................................................................................................................................................................................................................	23	17	0.06	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGC----------------------------AGCAACAATATCA---------------------------AC..........................................................................................................................................................................................................................	23	17	0.06	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAAC-----AGCAGCA--GG.........................................................................................................................................................................................................................................................................................................................	18	17	0.06	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAATATCAACAGCAA............................................................................................................................................................................................................................................................................................................................................................................................	24	18	0.06	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-ACA------------------------G---------CAGCAG...........................................................................................................	29	18	0.06	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC----------------------------AGCAACAATATCA---------------------------ACA---G---CAA...............................................................................................................................................................................................................	24	18	0.06	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ATCAACAGCAAC-----------------------------------------AGCAACAAC-----AGCAGCA--G..........................................................................................................................................................................................................................................................................................................................	29	18	0.06	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AGCAGCAACAATATCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................	20	19	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TATCAACAGCAAC-----------------------------------------AGCAACAAC-----AGCAG...............................................................................................................................................................................................................................................................................................................................	27	19	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-ACA------------------------G---------CAG..............................................................................................................	27	19	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC----------------------------AGCAACAATATCA---------------------------ACA---G---..................................................................................................................................................................................................................	20	19	0.05	1	0	1	0	0	0
.............................................................................................................................................A----------------------------------AC-----AGCAACAACAGCAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................AACAGCAGCAGCAACAA---------------------------------------------------------------------------------------CAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAACAGCAGC----------------------------A...................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAGCAGCA---------GCAGCAGC......................................................................	23	20	0.05	1	1	0	0	0	0
.....................................................................................................................................................................................................CAGCAACAA---------------------------------------------------------------------------------------CAACA------------------------ACAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................CAACAA---------------------------------------------------------------------------------------CAACA------------------------ACAGCAGCAGCAA...........................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................CAAC-----------------------------------------AGCAACAAC-----AGCAGCA--G..........................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................ATCAACAGCAAC-----------------------------------------AGCAACAAC-----A...................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-ACA------------------------G---------CA...............................................................................................................	22	20	0.05	1	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------G---------CAGCAGCAACAGCAACAACAGC...........................................................................................	24	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------A------------------------------ACA-ACA------------------------G---------CAGCAGCAACAG.....................................................................................................	21	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAGCAACAACAG............................................................................................	21	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAGCAGCA---------GCAGCAGCA.....................................................................	26	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................AGCAAC-----------------------------------------AGCAACAAC-----AGCAGCA--...........................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAACAGCAGCA---------GCAGCAG.......................................................................	27	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................GCAGCAACAA---------------------------------------------------------------------------------------CAACA------------------------ACAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---G---CAACAGC------------------A------------------------------ACA-ACA------------------------G---------CAGCAGCAAA.......................................................................................................	27	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................AA---------------------------------------------------------------------------------------CAACA------------------------ACAGCAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1
.................................................................................................................................................................................................GCAGCAGCAACAA---------------------------------------------------------------------------------------CAACA------------------------ACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAGCA---------GCAGC.........................................................................	21	20	0.05	1	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-AC....................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-ACA------------------------G---------CAGCAGCAACAGC....................................................................................................	19	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------------------AGCAACAATATCA---------------------------ACA---G---CAACAGC------------------.........................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................AACAATATCAACAGCAAC-----------------------------------------AGCAA.............................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-ACA------------------------G---------C................................................................................................................	25	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGC------------------A------------------------------ACA-ACA------------------------G---------CAGCAG...........................................................................................................	21	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAGCAGCA---------GCA...........................................................................	22	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-ACA------------------------G---------C................................................................................................................	26	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................CAACAGCAGCAGCAACAA---------------------------------------------------------------------------------------CAACA------------------------AC......................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................TATCAACAGCAAC-----------------------------------------AGCAACAAC-----A...................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................CAA---------------------------------------------------------------------------------------CAACA------------------------ACAGCAGCAGCAACAA........................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAACAGCAGC........................................................................................	21	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA---------GCAGCAGCAACA..................................................................	20	20	0.05	1	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................AACAATATCAACAGCAAC-----------------------------------------AGCAACAA..........................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-ACA------------------------G---------CAGCAGCA.........................................................................................................	29	20	0.05	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................CAACAATATCAACAGCAAC-----------------------------------------AGCAA.............................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------ACA-ACA------------------------G---------CAGCAGCAACAGCA...................................................................................................	22	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------------------------G---------CAGCAGCAACAGCAAC.................................................................................................	20	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-ACA------------------------G---------TT...............................................................................................................	28	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-T.....................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-AC....................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------A.........................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-......................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAGCA---------GCAGCAGCA.....................................................................	25	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAACAGCAGC........................................................................................	19	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-A.....................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAACAACAGCAGC........................................................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAGCA---------GCAG..........................................................................	20	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCA---------GCAGCA........................................................................	20	20	0.05	1	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................A-------ACAGCAACAACAGCAGC----------------------------AGCA................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................................................................GCAACAA---------------------------------------------------------------------------------------CAACA------------------------ACAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAGCAGCA---------GCAGCA........................................................................	21	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------------------A------------------------------ACA-ACA------------------------G---------CAGCAGCAACAGC....................................................................................................	24	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------AC........................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCAAC-----------------------------------------AGCAACAT..........................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAACAGCAGCA---------GCAGCA........................................................................	24	20	0.05	1	0	0	0	0	1
......................................................................................................................................................................................................AGCAACAA---------------------------------------------------------------------------------------CAACA------------------------ACAGCAGCAGCAAC..........................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAACAACAGCAGCA---------GC............................................................................	26	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGC------------------A------------------------------ACA-ACA------------------------G---------CAGC.............................................................................................................	19	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................AACAGCAGCAGCAACAA---------------------------------------------------------------------------------------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TATCAACAGCAAC-----------------------------------------AGCAACAAC-----AGC.................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-ACA------------------------...........................................................................................................................	23	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------A.........................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................ATATCAACAGCAAC-----------------------------------------AGCAACAAC-----....................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................ATATCAACAGCAAC-----------------------------------------AGCAACAAC-----AGC.................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---G---CAACAGC------------------A------------------------------ACA-ACA------------------------G---------CAGCAGC..........................................................................................................	24	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATATCA---------------------------ACA---G---CAACAGC------------------A------------------------------..........................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA---------------------------ACA---G---CAACAGC------------------A------------------------------ACA-ACA------------------------...........................................................................................................................	22	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAACAGCAGCA---------GC............................................................................	24	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................ACAATATCAACAGCAAC-----------------------------------------AGCAACA...........................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................AACAATATCAACAGCAAC-----------------------------------------AGCAAC............................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC------------------A------------------------------ACA-ACA------------------------G---------CAGCAGCAACA......................................................................................................	23	20	0.05	1	0	1	0	0	0

dp5

GCTGCTGCCGT----------------------------------------------------------------------------------------------------------------------------------AACGGCG-------------ATGCCTTCAACATCAGCGGCAG-----------------CAGCAGCAG------------CATTGGCAGCCG--------------CCGAAAAGGCGGAC------TTGGCGGCGAAGGC---------------------------------------------------CAC------CAGCACCAGCAGCGAGAAGAATG---------CCGCCA------------AAGCAGCAGC-----AGCAGCC--ACCGC----AT---------------CA---GAGATCTCATCGGGC---------AGCAGCACCACC-------------------------------------------------------ACCAGC--------ACGA-------------------------------------------------------------GCACGGGCACTAGCAGCAGCAACAGCA---------ACAGCACCAGCAACAGCAGCAGCAGT----------------GAGGC--C---------------------------A	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................CA------------AAGCAGCAGC-----AGCAGCC--ACCGC----AT---------------C................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	2	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................AAAAGGCGGAC------TTGGCGGCGAAGGC---------------------------------------------------CAC------.....................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................GGAC------TTGGCGGCGAAGGC---------------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................CAACATCAGCGGCAG-----------------CAGCAGCAG------------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................CTTCAACATCAGCGGCAG-----------------CAGCAGCAG------------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................CAACATCAGCGGCAG-----------------CAGCAGCAG------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................AACATCAGCGGCAG-----------------CAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC--------ACGA-------------------------------------------------------------GCACGGGCACTAG.....................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGT----------------GAGGC--C---------------------------.	19	2	0.50	1	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------ACAGCACCAGCAACAGCAGCAG........................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................CATCAGCGGCAG-----------------CAGCAGCAC------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAGCA---------ACAGCA........................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0

droPer2

ATCATCAT-G-------------------------------------------------------------------------------------------------------------------------------CAGC----------------------------------AGC-----AG------------CGGCAGC-------------GCAGCATTACCATCAG--------------CAG----------GC--AGCGCAGC-------AC---------------------------------------------------CACCAC---CACCAGCAGC-----------------------------------------AGCAACAAC-----AGCAGCA--ACAGC-------------------AGCA---GC-------------AACAGCAAC---------------A------------------------GCA---GCAGCA---------------------ACACCTGAA-------------------------------------------------CCACCAT---------------------CATCAGCATCATCA---------TCATCATCACCATCAGCAGCAACAGTTCTTGATGACGCCGACAGCAA--C---------------------------C	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................................................................................................................................ATCAG--------------CAG----------GC--AGCGCAGC-------A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................AGCATTACCATCAG--------------CAG----------GC--AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGTTCTTGATGACGCCGAC....................................	25	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................C-----AGCAGCA--ACAGC-------------------AGCA---GC-------------.............................................................................................................................................................................................................................................................................	19	20	0.15	3	3	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................AAC-----AGCAGCA--ACAGC-------------------AGCA---............................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................CAAC-----AGCAGCA--ACAGC-------------------AGCA---GC-------------.............................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................AGC-------------------AGCA---GC-------------AACAGCAAC---------------A------------------------GC..........................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................CAAC-----AGCAGCA--ACAGC-------------------AGCA---GC-------------A............................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................CAACAAC-----AGCAGCA--ACAGC-------------------A..................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droAna3

CA--------------CCA------------------------------------------------------------------------------------------------------------------GCAACAAC----------------------------------AAC-----AGCAGCAACATCAGCTG---------------------------------------------------------------------------------------CAACAGCACCA------------------------ACAACAGTTGCAACAC------C--------------------------AACAGCAG------------CAACAACAGC-----AACAGCA--CCTGC----ATCAGCAAC----------------------------------------AACTGCAGCCACA------------------------T---------CAGCAGC---------------------------------------------------A-A---------------------------------ATGCAACACCATCAGCAGCAACAACAGCA---------GCAGCAGCAGCAACAGCATC----------------------AGCAA--C---------------------------T	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................................................................................................................................................................................................................................................................................................AACAC------C--------------------------AACAGCAG------------CAACAAC............................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAGCAACAACAGCA---------GCAGCAGC......................................................................	27	6	0.17	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAGCAACAACAGCA---------GC............................................................................	21	9	0.11	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------GCAGCAGCAGCAACAGCATC----------------------A...................................	22	12	0.08	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCA---------GCAGCAGCAGCAAC................................................................	24	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCA---------GCAGCAGCAGCA..................................................................	25	20	0.05	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACAGCA---------GCAGCAGC......................................................................	24	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCA---------GCAGCAG.......................................................................	20	20	0.05	1	0	1	0	0	0	0

droBip1

GG--CTATAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACACT--CATGATCG----TAGCAACAACAG----------------C----------CCGCC--CCCGC-------A------GCAATCGCAGCAACAGCAGCAGCAACAGCCGACT-GTCAATG-----------------------------------------------------------------GC--------------------------------------------AACA---AC-------------A------------------------------------------------------------------------------------------------------------------ACA-ACA------------------------A------------TAG---CGGCGGCAACAACAACA---------GCAGCAACAGCAACAACCCC----------------------AACAACTC---------------------------C	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CA--------------GCA------------------------------------------------------------------------------------------------------------------GCAGCAGC----------------------------------AGC-----AG------------------CATT--TACAGCAG----CAGCAGCAACAG------------------------------------------------------------CATCT------------------------ACAGCAGCAGCAGCAA---CATCACCAGC-----------------------------------------AGCAACAAC-----AACAGCA--TCTAC-------------------AGC----------------------------AGCAACAGCAGC---A------------------------GCT---GCAGCAACATC---------------------------------------------------T-A---------------------------------CAGCAGCAACAGCAGCAGCATCATCTACA---------GCAGCAGCAGCATCTACAGC----------------------AACAG--C---------------------------A	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCTGCTGTTGCTG-------------------------------------------------------------------------------------------------------------------------------TT------------------------------------------G------------CTGCC---GG--G-------GGAGCGATAGAAAGTG--------------AAA----------AC--GAAGCAGC-------A------------GCAG---------------------------------------CAG---------C--------------------------------------------AGCAG----------------CAGCAACGGC----------------GACTACGAC-------------A---ACAAA---------------ATGGCT------ATGAC--------GAACGTACTGCG---------------------GCAAGAAAAATCACATAA----------------------------------------TCGCCGT---------CGACAGCGACGCCAGCGGCAGCAGCA---------GCAACAACAATAAAAGCAAC----------------------AACAA--C---------------------------T	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GTTGCTGCTGT----------------------------------------------------------------------------------------------------------------------------------T------------------------------------------G------------CTGCCGG-------------GGAGCGATAGAAAGTG--------------AAA----------AC--GAAGCAGC-------A---------------------G------------------------------CAGCAG---------------------------------------------------------------------------CAGCAACGGC----------------GACTACGAC-------------A---ACAAA---------------ATGGCT------ATGAC--------GAACGTACTGCG---------------------GCAAGAAAAATCACATAA----------------------------------------TCGCCGT------CGACAGCGACGTCGGCATCAACAATAGCA---------ACAACAACAGCAGCAGCAGC----------------------AACAA--C---------------------------C	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCATCAACAGC----------------------------------------------------------------------------------------------------------------------------------A------------------------------------------G------------CAGCAACACC--AACAG-------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCAACACCAACAGCAGCAGC-----ATATGCAGCAGCAACAGCAG------------CAGCAACATC----------------AGC-------------------AGC----------------------------AGCAACATCAAC---A------------------------GCA---GCA---GCAGC------------------A------------------------------TCA-ACA------------------------G---------CAGCAGCAGCAGCAGCATCAGCAGCA---------GCAACAACATCAGCAGCAGC----------------------AACAA--C----------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CA--------------ACA------------------------------------------------------------------------------------------------------------------ACAACAAC----------------------------------AGC-----AG------------CAGCAGCAG---------------------------------------------------------------------------------------CAGCA------------------------ACAGCAGCAACAACAA------CAGC--------------------------AGCAGCAACAGCAGCAGCAGCAACAAC-----AGCAACA--GCAGC-------------------AGCA---GC-------------AACA---------------------------------------------------------A----------------CAAC--------ACACCCAACGGT-----------GCG-------------------------------------CAGCAGCAGCAGCAACATCACCAGCAGCA---------ACATCATCAGCAGCAGCAGC----------------------AGCAG--C---------------------------A	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAAACAACAGC----------------------------------------------------------------------------------------------------------------------------------A------------------------------------------G------------CAGCAACAA---------------------------------------------------------------------------------------CAACA------------------------ATAGCAGCAGCAGCAA------CAGC--------------------------AACAACAACAACAGCAGCAGCAACAAC-----AGCAACA--GCAGC-------------------AGCA---GC-------------AACAAC------------------------------------------------------------------------------------ACACCCAACGGT-----------GCGCA-GCA------------------------G---------CAGCAGCAGCAACATCAGCAGCAGCA---------GCAGCAACATCATCAGCAGC----------------------AGCAG--C---------------------------A	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ATCATCAGGCC------------------------------------------------------------------------------------------------------------------CACCAACAGC----------------------------------------AGCAGCAG-----------------CAGCAAC------------------------AA--------------------------------------C-------AC------CAACAGCAT------------------------------------------------CAGC--------------------------AACAG---------------CAGCAGCAGCAG-------CAGCA----------------------------AC-------------A---ACAAC---------------A------------------------GCA---ACAGCA---------------------ACATCTTCATGCCCAGCAGCTGTTGGCTCAGAGTCA-GTT------------------------G---------CAGCAGCAGCAGCAGCAACAGCAGCA---------GCAACATCATCAGCAGCAAC----------------------AACAG-------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

CA--------------GCA------------------------------------------------------------------------------------------------------------------GCAGCAAC------AAACC--------------------------------------------------------------------------------------------------------------GCCGCCCTGC-------AC------CATCAGCAA------------------------------------------------CAGCAGC-----------------------------------------AGCATCAACAGCAG-----CA--GCA----------------------------AC-------------A---CCAAC---------------A------------------------GCACCTACAGCA---------------------ACACCATCAAGCGCACCA----------------------------------------TCA---GCATGTCCTGCAGCAGCAGCAGCAGCAGCAACAGCA---------GCACTCCCAGCATCAGCATC----------------------AGCAG--C---------------------------A	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGCA---------------------ACACCATCAAGCGCAC...........................................................................................................................................................................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATCAAGCGCACCA----------------------------------------TCA---G..........................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................C------CATCAGCAA------------------------------------------------CAGCAGC-----------------------------------------AGCA..............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CA--GCA----------------------------AC-------------A---CCAAC---------------A------------------------GCACCTA.....................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................AACC--------------------------------------------------------------------------------------------------------------GCCGCCCTGC-------AC------CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................................................................................................................................................................................................................................................CAGCAA------------------------------------------------CAGCAGC-----------------------------------------AGCAT.............................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAACAGC........................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAACAG.........................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAGCAGCAGCAGCAGCAAC...........................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAACAGCA---------..............................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................AGCAA------------------------------------------------CAGCAGC-----------------------------------------AGCATCA...........................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................CAG-----CA--GCA----------------------------AC-------------A---CCAAC---------------A------------------------GC..........................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CA--------------GCA------------------------------------------------------------------------------------------------------------------GCAGCAAC------AAACC--------------------------------------------------------------------------------------------------------------GCCGCCCTGC-------ACCACCAGCAACAGCAGCAGCAGCAGCAGCA------------TCAACA-----------------------------------------------------------------------------G-----C---------------------------AGCA---AC-------------A---CCAAC---------------A------------------------GCACCTACAGCA---------------------ACACCATCAAGCGCACCA----------------------------------------TCA---GCATGTCCTGCAGCAGCAACAGCAGCAGCAACAGCA---------GCACTCCCAGCATCAGCATC----------------------AGCAG--C---------------------------A	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................................................................................................ACCACCAGCAACAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	11	1.00	11	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................ACCAGCAACAGCAGCAGCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................	25	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

ACGATGAA-----------------------------------------------------------------------------------------------------------CCACGT---CCTCAGGCACCAACT-C------AGATC------------------------------------------------------------------------------------------------------------AC--GTACCAGC-------A------GCCACAGCAACA------------------------GTTGCAGCAGCAACCT------CAGC--------------------------AGCAG---------------CAACAGGTG-----TAT-----------------------------GCT---GC----TCC------T---ACACA---------------G-----GCAACCATTAGCAA-------------------------------------------------------------------------------------------------------------------TCC---TGGTGCCCTTCCCGATG---------GCTATGATTTCGTTAAGCCC----------------------GAAAATGCCGAGGCCGCCATTGCCGAGCTGCACAGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

CA--------------TCA------------------------------------------------------------------------------------------------------------------GCAGCAGC----------------------------------ATC-----AGCAGCAG------------------------------CATCAGCAGCAG---------------------------------------------------------CATCAACA------------------------GGAGCAACAGCAACGC------CAGC---AGG-----AG------------------------------ATGCAACGTC-----AGCAGCA--ACAGC----AAATGGAAC-------------------TAATCAAGC---------AGCAACGCCAGCAACA------------------------G---------GAGCTGCT---------------ACT------------------------------TCA-ACA------------------------G------------------CAGCAGCAGCAACAGCA---------ACAACATCAGCAGCAACAGCAACTGC----------------GCCAC--C---------------------------A	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................G------------------------------CATCAGCAGCAG---------------------------------------------------------CATCAACA------------------------GGA.....................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................AG------------------------------CATCAGCAGCAG---------------------------------------------------------CATCAACA------------------------GGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................ATCAACA------------------------GGAGCAACAGCAACGC------CAGC---...........................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGC---------AGCAACGCCAGC........................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................GGAGCAACAGCAACGC------CAGC---...........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT------------------------------TCA-ACA------------------------G------------------CAGCAGCAGCA.............................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACGCCAGCAACA------------------------G---------GAGCTGC...........................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................AGCAG------------------------------CATCAGCAGCAG---------------------------------------------------------CATCAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................CATCAGCAGCAG---------------------------------------------------------CATCAACA------------------------G.......................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA---------ACAACATCAGCAGC................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.A--------------TCA------------------------------------------------------------------------------------------------------------------GCAGCAGC----------------------------------ATC-----AGCAGCAG------------------------------CAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................ATC-----AGCAGCAG------------------------------CATCAGCAGCAG---------------------------------------------------------CAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
.A--------------TCA------------------------------------------------------------------------------------------------------------------GCAGCAGC----------------------------------ATC-----AGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAGCA---------ACAAC.........................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................ATC-----AGCAGCAG------------------------------CATCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

GCTGCTGCTGT----------------------------------------------------------------------------------------------------------------------------------TGCGGCTTATCGTCCCACAAATAACTGCAAATTGTGCGGCAG-----------------CAACTGTAT------------TGTTTGTCCGCGCTTATCTCTGGCCAAAA----------AC--GAAACAAC-------A---------------------GCAATGGCAACGGCCAGTAAATCAGTG----GAACAA------CAGC--------------------------AGCAGCAACAGCAACAGCAGCAGGAGC-----AGCAACA--ACAACGGCA---------------ACTG---GC-------------AACAAA------------------------------------------------------------------------------------CTGCCAGGCAAC-----------ACGCATGCGCCGCCAAAAGTCATGTTCGTG-------------------------------------CC---------A------CAAAGGCGACACC----------------------TAAGC--C---------------------------A	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAGCAGGA...........................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................ACAA------CAGC--------------------------AGCAGCAACAGC........................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................CAA------CAGC--------------------------AGCAGCAACAG.........................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1	0

dvi_19145

scaffold_13049:9290054-9290204 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

CGACGACGACAACAACGACACNNNNNNNNNNNNNNNNNNNNNNNNNTATTAATTGGTAACACAGGTAGCCGTTGTTGTCGTTTGGTGTTGTTCGTCGTTGTTGTTGTTTGTCGTCGTCGTTGTTCGTCGTTGTTGTTGTTGTTGTCGATGATCCTTATTACTATTGTTACCGGTTAATAGTAAGTTAAGCAAGTTAACGTCACCGCAGCCGTAGTGGTTGTCGCCGTTGCTGTTGTTGGCGCGGTTGTTGA ***************************************************............((.((........)).))........................((((((((((((..........))))))))..)))).........*************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	V116 male body	M027 male body	SRR060684 140x9_0-2h_embryos_total	SRR060666 160_males_carcasses_total	SRR060669 160x9_females_carcasses_total	V053 head	SRR060679 140x9_testes_total	SRR060662 9x160_0-2h_embryos_total	SRR060672 9x160_females_carcasses_total	SRR060660 Argentina_ovaries_total	SRR060668 160x9_males_carcasses_total	SRR060687 9_0-2h_embryos_total	SRR060667 160_females_carcasses_total	SRR060673 9_ovaries_total
...........................................................................TCTCGTTTGGGGTGGTTCGTC...........................................................................................................................................................	21	3	5	4.00	20	7	5	0	2	1	1	0	1	0	0	1	1	1	0	0
.............................................................................TCGTTTGGGGTGGTTCGTC...........................................................................................................................................................	19	2	5	2.20	11	8	0	0	0	1	1	1	0	0	0	0	0	0	0	0
...........................................................................TCTCGTTCGGGGTTGTTCGTC...........................................................................................................................................................	21	3	5	2.20	11	1	0	7	0	2	0	0	0	1	0	0	0	0	0	0
.............................................................................TCGTTCGGGGTTGTTCGTC...........................................................................................................................................................	19	2	2	1.50	3	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................................TGTCGTTTGGGGTGGTTCGTC...........................................................................................................................................................	21	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................TCTCGTTCGGTGTGGTTCGTC...........................................................................................................................................................	21	3	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................CTCGTTTGGGGTGGTTCGTC...........................................................................................................................................................	20	3	9	0.44	4	1	2	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................TCGTTCGGGGTTGTTCGT............................................................................................................................................................	18	2	10	0.30	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................TCTCGTTTGGGGTGGTTCGT............................................................................................................................................................	20	3	15	0.27	4	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................ATCCGTAGTGGTTGTCTCTGT........................	21	3	4	0.25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................TGTCGTTCGGGGTGGTTCGTC...........................................................................................................................................................	21	3	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................TCGTTCGGTGTGGTTCGTC...........................................................................................................................................................	19	2	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................CTCGTTCGGTGTGGTTCGTC...........................................................................................................................................................	20	3	9	0.22	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................CTCGTTCGGGGTTGTTCGTC...........................................................................................................................................................	20	3	14	0.14	2	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................TGTTGTTGTGGAAGAACCTTA..............................................................................................	21	3	7	0.14	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................CGTCGTTGTAGTTGCTTGTCGGC........................................................................................................................................	23	3	8	0.13	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................TCGTTTGGGGTGGTTCGTCA..........................................................................................................................................................	20	3	9	0.11	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................GTAACCGTCGTTGTCGTTTG.......................................................................................................................................................................	20	2	10	0.10	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................TCGTTCGGGGTTGTTCGTCA..........................................................................................................................................................	20	3	10	0.10	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TCGTCGTTGTTGTTGTTGTT............................................................................................................	20	0	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................CGTCGTTGTCGTTTGGTG....................................................................................................................................................................	18	1	10	0.10	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................ATAGTGAGTTAAGGAAGGTA.......................................................	20	3	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................CGTTCGGGGTTGTTCGTC...........................................................................................................................................................	18	2	13	0.08	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TAGTGAGTTAAGGAAGGTAA......................................................	20	3	18	0.06	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................TTGTCTGACGTCGTCGTTGTT...............................................................................................................................	21	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................TATAACTATTGTGACCGGAT............................................................................	20	3	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................TCTTCGTTGTTCGTCATTTTT.....................................................................................................................	21	3	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................TCGTTCGGAGTGGTTCGTC...........................................................................................................................................................	19	3	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

-8.2	-7.7	-7.6