ID:

dvi_19060

 Coordinate:

scaffold_13049:8743137-8743416 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.5 -25.5 -25.2

Flybase annnotation

CDS [Dvir\GJ12125-cds]; exon [dvir_GLEANR_12116:1]; exon [dvir_GLEANR_12116:2]; CDS [Dvir\GJ12125-cds]; intron [Dvir\GJ12125-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------#################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGCAGCAGCAGCAGCAGCAGCAGCTTCGGCAGCATGCCACAATTTACGCTGTGAGTAGCACAAAAGCTGTTATATTATATACCTGCAGAGTCCACTGCGTGTAGGGCGACGATAGCCGATGGTTCCCATTGCTGTTGCCGGGTGCCGCTGGGTTGCGTTAATATAGACCTTTTGTTTATCTATTGGTGTCGTGACGCGTCGCAATATTATGCAAGGGAAATCGGTTGCCGTCGCCTACTAATACATAGATCGCACGCACTTCAATTAACTATAATATGTATATATATATATTTCTTTTGGTAATGCGACGTCTTTGCGGCGCTGAATCAGCTACAATAAACACAATGCTCCACCCAACAACGATATACTCACGCGCGTCG
****************************************************************************************************************************************************************************************...........((((((((...((((.((((((((((.(((.((.((.((...(((.....)))...))))))))).............((((((....)))))))))))))))))))))))))))).....**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 V053
head
 V116
male body		 M047
female body
 M061
embryo
 SRR060656
9x160_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060664
9_males_carcasses_total
 SRR060670
9_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060678
9x140_testes_total
 V047
embryo
......................................................................................................AAGGCGACGATGGCGGATGG.................................................................................................................................................................................................................................................................. 20 3 5 1.80 9 9 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCGGCAGAGTCCACTGCGTGTAGGGC................................................................................................................................................................................................................................................................................. 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................AATAAACACAATGCTCCACCCA........................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................TTTGGTAATGCGATGTCTTTGC............................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................................................................................TTTGGTAATGCGACGTCTTTG................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................TAATGCGACGTCTTTGCGGCG........................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................GGTGTCGTGACGCGTCGCAAT............................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................AATAAACACAATGCTCCACCCAAC...................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GGGAAGTCGGTTGCCGTCG................................................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................GCTCAACCCAACAACGATATACT........... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................ATGCAAGGGAACTCGGCTC......................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................CACAAAAGGTGTTAGATCAT.............................................................................................................................................................................................................................................................................................................. 20 3 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
...AGCAGCAGCAGCAGCAGCAGCT................................................................................................................................................................................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................ACAAAAGGTGTTAGATCAT.............................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TTGTGCGTGGGAAATCGGT........................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCGTCGTCGTCGTCGTCGTCGTCGAAGCCGTCGTACGGTGTTAAATGCGACACTCATCGTGTTTTCGACAATATAATATATGGACGTCTCAGGTGACGCACATCCCGCTGCTATCGGCTACCAAGGGTAACGACAACGGCCCACGGCGACCCAACGCAATTATATCTGGAAAACAAATAGATAACCACAGCACTGCGCAGCGTTATAATACGTTCCCTTTAGCCAACGGCAGCGGATGATTATGTATCTAGCGTGCGTGAAGTTAATTGATATTATACATATATATATATAAAGAAAACCATTACGCTGCAGAAACGCCGCGACTTAGTCGATGTTATTTGTGTTACGAGGTGGGTTGTTGCTATATGAGTGCGCGCAGC
****************************************************************...........((((((((...((((.((((((((((.(((.((.((.((...(((.....)))...))))))))).............((((((....)))))))))))))))))))))))))))).....**************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060678
9x140_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060670
9_testes_total
 V047
embryo
 SRR060682
9x140_0-2h_embryos_total
 V053
head
 SRR060666
160_males_carcasses_total
 V116
male body		 M047
female body
 SRR060686
Argx9_0-2h_embryos_total
..................................................................................................................................................................................................................................................................................................................................................TTGTGTCACGAGATTGGTTG...................... 20 3 7 1.00 7 0 7 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................TGGGTTGTTGCTATATGAGTG........ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................TCGTACGGTGTTAAATGCGA.......................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................GCCGTCGTACGGTGTTAAATG............................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................GACAACGGCCCACGGCGACCCAA.................................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................GTTATTAATGTTACGAGGTAG.......................... 21 3 7 0.29 2 0 0 0 0 0 0 1 1 0 0
................................................................................................................................................................................................................................................................................................................................................ATTTGGGGTACGAGGTGG.......................... 18 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................CGGCTTCCCAGGGTAACG........................................................................................................................................................................................................................................................ 18 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................AAAAGCCGCGTCTTAGTC.................................................. 18 2 8 0.13 1 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................ACTGCACCGGATGATTAGG........................................................................................................................................ 19 3 9 0.11 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................TAATTATATCTGGAATACTAA........................................................................................................................................................................................................... 21 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................TTATTAGTGTTACGAGATAG.......................... 20 3 13 0.08 1 0 0 0 0 1 0 0 0 0 0
..................TCGTCGAAGCCTTCGAAAGG...................................................................................................................................................................................................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 1 0 0 0 0 0
............................................ATGCGACAGTGAGCGTGTT............................................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
...TCGTCGTCGTCGTCGTCGT...................................................................................................................................................................................................................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................GCGCAGCATTATGATACGC....................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
............................................ATGCGACAGTCTGCGTGTT............................................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................CGAAGTTAATTGCTATTA......................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................................................................................................................................................................GTTATTAGTGTTACGGGGC............................ 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:8743087-8743466 - dvi_19060 AGCAGCAGCAG------------C------------------AGCAG--------------------------------------------CAGCAGC------TTCGGC---AGCATGCCACAATTTACGCTGTGAGTAGCA--CAAAAGCTGTTATATTATATACCTGCAG----------------------------------------------------------------------AGTCCA-----------CTGCGTGTAGGGCGACGAT--AGCCGATGGT-TCCC------------------AT--------TGCTGTTGC-------------CGGG--------TG----------------------------------------------CCGCTG--------------------------------------GGTTGCGTTAAT-------------------------------------------ATAGACCTTTTGTTTATCTATTG----GTGTCGTGA------------------CGC------G--T-CGCA----ATATTATGCAAGGGAAATCGGTT-G-CCG------------------------------TCG-------------CC-----------------------------------------------------------------------------------TAC-TAATACATA--GATCGCAC-GCACTTC----------------AATTAACTATAATATGTATATATA--TA----TAT----TTCTTT----TGGTAATGCGACGTCTTTGCGGC--------------GCTGAA----TCAGCTACA---ATAAACACAATGCTCCACCCAACAACGATATACTCACGCGCGTCG
droMoj3 scaffold_6680:6601425-6601880 + AGCAGCAGCAG------------C---------------GGCGGTGGCATCAGAG------------------------------------CAGCAGC------TCCACT---AGCATGGCACAATTTACGCTGTGAGTAG-A--CAAGCTGGGCTCTTTCAGC--A---CAGAGTCCACC-------------------------------------------------------ACGGG-------GCGAGTGGGCGACGG---------------CGAAGGCGACGG---CAC------------------CGATAGCGATCGCTGTTGCT-------GTTGCCGGGGCCTACCTAGG--------------------------------------------------A--------------------------------------GGGTGCGTTTATATATCTATTTGTATTACGTATATGTATGTATGAACATATATAGAGACAAC-TTTGTTAATCTACTTACTGAAG--------TCGTGCTATACGA---CGC------G----CGTA----ATATTATGCAAGTGAAATGGCAG---CCG------------------------------TCG-------------CC-----------------------------------------------------------------------------------TAC-TAATACATAATGATCGACACACACACACACTCACA-CATTTTAAATTAATTA----------------TTA----CAT----ATCTTT----CGGTTACTGGGTGCCT--------------------GCCGCCC----TTAGCTACA---ATAAACACAATGCTCCACCAAACAACGATATCATTACACGCGTCG
droGri2 scaffold_15110:4488624-4488869 - CGCCTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA----AAATTATGCAAGTGAAATCGGCG---CCG------------------------------TCG-------------CCTACTACACACGTATCTAGCTTGATTTATATTTAAGTATGTTTACAGTAGTTGATATCCCCGCGCTTGGTTAAATTTATT-AAGTAC-CTATATAGA--TATGTATATAT--------------------------------------------ATATA----TATGTCTT----TTTTGGGGTTATTTGGGGCCTGTGTGTC--------------TTTCCC----ATAGCTACA---ACAAACACAATGCACCGCCCAACAACGATATCATTACACGCGTCG
droWil2 scf2_1100000004762:1200684-1200942 + AGCAGCGGGGT------------C------------------ACTG---------------------------------------------GAGCACCCCCAATGACAAT---ACGATGGCACAATTTACACTGTGAGTAC-G--CAAAAAGAGCTAAATTAGA--GCT-------ACCCTAAGGGGAAAACGG------------GCGGTGTAGTCCATAAATTTGGGT---------------------------------------------------------------------------------------------CAATTTACGTG-------AA-------GGTGGGCCAATGGGCGGGGCAGCGGAGAGGGTCAAAGAATCAAATTCCCCCTTAAGCTCTTT-----------------------------------------------------------------------------------------------A-GGCTTTTGTTTATCTATTG----TTGG-----------------------TGGCGG---C--G-CGTA----ATATTATGCAAGTGAAATCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group6:9939473-9939881 - AGCAGCATCG---------------------------------------------------------------------------------GAGCACCCCCAGTTACAAT---AGGATGGCACAATTTACACTGTGAGTAT-A--AGTATG-----------GATGAC------------------------GGTGCACAGTAACATCGCTGCCGTCCCTAAAT-GGGGTCGCTTTACGCA-------GCGCATAGCCGACAG------------------------------CGC------------------AAGAAT----------------------------------------------------------------------CAGATTAC-----------TTTGGTGTTGTTGCGCTCTGTGGCGGCACGGCTTCCGTCGA------------AT-----------------------------------------GG--AGC-TTTGTTTATCTATTG----ACGG---GACGCCGCACCGCACCACCACTC------G--T-CGCA----GTATTATGCAAGTGAAATCGACG-ACCCGA-----------------------------CCGTCTACT-----------------------------------------------------------------------------------------CAGCAC-TAATACATA--TATCATAAAA--T---------------------------------------------TAAAACCATTTTTT----TGTTGTGGTTTT------------TGGCA-TTTGAAACGG-GGCTCGA----TCAGCTACA---ACAAACATAATGCGCCGCCCAGCAACG---ACATTACACGCGTCG
droPer2 scaffold_61:219399-219807 - AGCAGCATCG---------------------------------------------------------------------------------GAGCACCCCCAGTTACAAT---AGGATGGCACAATTTACACTGTGAGTAT-A--AGTATG-----------GATGAC------------------------GGTGCACAGTAACATCGGTGCCGTCCCTAAAT-GGGGTCGCTTTACGCA-------GCCCATAGCCGACAG------------------------------CGC------------------AAGAAT----------------------------------------------------------------------CAGATTAC-----------TTTGGTGTTGTTGCGCTCTGTGGCGGCACGGCTTCCGTCGA------------AT-----------------------------------------GG--AGC-TTTGTTTATCTATTG----ACGG---GACGCCGCACCGCACCACCACTC------G--T-CGCA----GTATTATGCAAGTGAAATCGACG-ACCCGA-----------------------------CCGTCTACT-----------------------------------------------------------------------------------------CAGCAC-TAATACATA--TATCATAAAAT-----------------------------------------------GAAAACCATTTTTT----TTTTGTGGTTTT------------TGGCA-TTTGAAACGG-GGCTCGA----TCAGCTACA---ACAAACATAATGCGCCGCCCAGCAACG---ACATTACACGCGTCG
droAna3 scaffold_13337:3657967-3658252 - AGCAGCCGCAG------------C------------------AGTGG---------------------------------------------------------GACAAT---AGGATGGCACAATTCACGCTGTGAGTAT-C-------------------------TG-----------------------------------------------------TTT-G----------TTATCG----------------CTG---------------------------CACCACGCCGCAAAGTGGAACGGCCTGGAATTCC----GTAGAG-------TC--------TGCCGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GG--AGC-TTTGTTTATCTATTG----GCGC---GA------------------CGC------T--TC--------GGATTATGCAAGTGAAATCAGTA-A--------------------------------------------------AC-----------------------------------------------------------------------------------CAC-TAACACAA--TGATCATGA-ACATTAC----CATTC-G---------------------------------------------------------TTTT------------CGGCACTTTGTAATGGCGGCTCAA----TTAGCTACA---ATAAACACAGTGCGCCGCCCA---GCG---ACAGTACGCGAGTGG
droBip1 scf7180000395954:58534-58819 - AGCAGCCGCAG------------C------------------AGTGG---------------------------------------------------------GACAAT---AGGATGGCACAATTCACGCTGTGAGTAT-C-------------------------TG-----------------------------------------------------TTT-G----------TTATCG----------------CTG---------------------------CACCACGTCGCAAAGTGGAGCAGCCTGGCATAAT----GTTGAG-------TC--------TGGCGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GG--AGC-TTTGTTTATCTATTG----GCGC---GA------------------CGC------T--TC--------GGATTATGCAAGTGAAATCGGTA-A--------------------------------------------------AC-----------------------------------------------------------------------------------CAC-TAACACAA--TGATCATGA-ACATTAC----CATTC-G---------------------------------------------------------TTTT------------CGGCACTTTGTAATGGCGTCTCAA----TTAGCTACA---ATAAACACAGTGCGCCGCCCA---GCG---ACAATACGCGTGTGG
droKik1 scf7180000302486:2291630-2291965 + GGCAGCAGCAG------------C------------------AGCAGCAGTGGAGGAGCACCGGCACC---------------------AGCAGCACCCCTCCGGACAAT---AGGATGGCGCAATTCACACTGTGAGTAT-A--TG-------------------------------------------------------------------------------AG----------TTATCAGTGGG-----------CA-------------------------------CCC------------------ACGGATTCCCC-----------------------------CGGCAA----------------------------------------------CCGCTG--------------------------------------GGGCGAGCTTAT------------------------------------------------GC-TTTGTTTATCTATTA----ACGG-----------------------CGCCGCCGCG--T-CGCCGTGTGTATTATGCAAGTGGAAACCGAAAC-CCGAAACCC----------------------------------AAACAAG--------------------------------------------------------------------------------ACAAAAC-TAATACGT--AGATCATGAACCATTAC----CAT----------------------------------TTGCG----------------------------------------GCTCTC--------CTGCTTAATTATGTAGGTACA---ACAAACACAGTGCGCCGCCGGGCAGCGGCGATAGTACGCGCGTCG
droFic1 scf7180000453807:864610-864945 + AGCAGCAGTGGCAGCAGCAGCAGCAGTGG------------CAGTGGGACTCGG-----ATT------------GGGATT----GGAGGAGGAGCACCCCCCCGGACAATAGTAGGATGGCACAATTCACACTGTGAGTAT-A-------------------TATATCTA-----------------------------------------------------GTTGG----------TTATCAGTCGG-----------CAG---------------TG----------CAGCAC------------------TTGGATTTCCTGCTTTTGCG-------AC--------CGTTGTCAATG-----------------------------------------------------------------------------------------G-----------------------------------------------------GGG-AGCTTTTGTTTATCTATTG----ACGG-----------------------CGC------TCGACGGCG----GTATTATGCAAGTGAATTCGGT--------------------------------------------------TGGAG-----------------------------------------------------------------------------------GAC-TAATACATATAGATCATGAAACATTAA----CATA-CA------------------------------TTACGAG-----------------------------------------------------------------CAGCTACA---ACAAACACAGCGCGCCGCCCAGCAGCG---ATAGTACGCGCGTGG
droEle1 scf7180000490564:502576-502908 + AGTGGCAGTGG------------C------------------AGTGGGATCGG-----CATCGGCAAC------GGGAAC-------GGAGGAGCACCCCCTCGGACAAT---AGGATGGCACAATTCACACTGTGAGTAT-A-------------------TATATCCA-----------------------------------------------------TTTGG----------TTATCAGTAG-----TGGG---CTG---------------TG----------CAGCAC------------------ATGGATTTCCTGCTTATGCG-------AC---C----GCCTGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------AAG-AGCTTTTGTTTATCTATTG----GCGG-----------------------CGC------T--T-GGTC----GTATTATGCAAGTGAAATCGGTG-GTTCAG---------------------------------TTGTTGGGTTCGGG-----------------------------------------------------------------------------------GAC-TAATACATATGGGTCATGAAACATTAC----CATG-CA------------------------------TTACGAG-----------------------------------------------------------------CAGCTACA---ACAAACATAGTGCGCCGCCCAGCAGCG---ACAGTACGCGCGTGG
droRho1 scf7180000778255:30832-31122 + AGTGGGATCGG------------C------------------AG------CGGAG------------------------------------GAGCACCCCCCCGGACAAT---AGGATGGCACAATTCACACTGTGAGTAT-A---------------------TATCTT-----------------------------------------------------TCTGG----------TTATCAGTGGG-----------CTG---------------TG----------CAGCGC------------------ATGGATTTCCTGCTTATGCG-------AC--------TGCTGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GGA-AGCTTTTGTTTATCTATTG----ACGG-----------------------CGC------T--T-TGCA----ATATTACGCAAGTGAAATCGGTA-GTT---------------------------------------GT------GGG-----------------------------------------------------------------------------------GAC-TAAGACATGTAGATCATAAAACATTAC----CATG-TA------------------------------TTACGAG-----------------------------------------------------------------CAGCTACA---ACAAACACAGTACGCCGCCCAACAGCG---ACAGTACGCGTGTGG
droBia1 scf7180000302428:8059963-8060359 - AGAAGCAGCAG------------AAGTGGCAGTGGGATCGTCAGTGGGATCAGAGGAGCAAC---------------------------ACCATCACCCCCCCGGACAGT---AGGATGGCACAATTCACACTGTGAGTAT-A--CACTTA-----------TGTATCTT-----------------------------------------------------TTTGG----------TTATCAGTCGGCCAGGGGG---CTG---------------------------CAGCAC------------------ATGGATTTCCTGCTTTTGCCTTGGCTCGTCCCCGTTCCCCTGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GGG-AGCTTTTGTTTATCTATTG----ACGG-----------------------CGC------T--T-GGCG----GTATTATGCAAGGGAATTCGCTG-ACTGG-GTTTCGGGTGTTTGGGTGCTTGGGTGTCTGGGTATCGT------GGG-----------------------------------------------------------------------------------GAC-TAGTACATTTAGATCATGGAGCATTAC----CATAGCA------------------------------TTACGAGCATTG------------------------------------------------------------CAGCTACA---ACAAACACAGTGCGCCGCCCAGCAGCG---ACAGTACGCGCGTGG
droTak1 scf7180000415741:56419-56677 - AGTGG------------------------------------------GATCGGA---------------------------------------GCACCAC------CAAT---AGGATGGCACAATTCACACTGTGAGTAT-ATATGTACA-----------TATATCTT-----------------------------------------------------TTTGG----------TTATCAGTCGG-----------CTG--------------------------------C------------------ATGGATTTCCTGC------------------------CCCTGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GGA-AGCTTTTGTTTATCTATTG----ACGC-----------------------CGC------T--T-GGCG----GTATTATGCAAGGGAATTCGCTG-CTTGG-GTTTC----------------------------------AGTTGGGG-------------------------------------------------------------------------------GGGTAAC-TAATATAT------------------------------------------------------------TTACGGGCCTTA------------------------------------------------------------CAGCTACAACAACAAACACAGTGGGCCGCCCAGCAGCG---ACAG--------TCG
droEug1 scf7180000409711:1576875-1577204 + GGCAGTGGGAA------------C---------------GTCAGTGGGATCGGAGGAGCATCGGCACC------------------------AGCAGCCCCCCGGACAAT---AGGATGGCACAATTCACACTGTGAGTAT-A-------------------TATATCTT-----------------------------------------------------TTTGG----------TTATCAGTCGG-----------TTGCGC------------TG----------CACCAC------------------ATGGATTTCCTGCTTTTGCG-------GA-------CCCTTGTCATT------------------------------------------------------------------------------------------------------------------------------------------------GGA-AGCTTTTGTTTATCTATTG----ACGC-----------------------CGC------T--T-TGCG----GTATTATGCAAGTGAATTCGGTG-TTTGG---------------------------------------G-GTTTGGG-----------------------------------------------------------------------------------GACTTAATACATATAGATCATGAAACATTAT----CATATCA------------------------------TTGCGAGCATTA------------------------------------------------------------CAGCTACA---ACAAACACAGTTCGCCGCCAAATAGCG---ACAGTACGCGCGTGG
dm3 chr3L:9720579-9720933 + GGCAGTG---G------------C------------------AGTGGGAACGGAGGAGCACCAGCACC------AGCACCATCAGCAGCAGCAGCACCCCCCCTTGCAAT---AGGATGGCACAATTCACACTGTGAGTAT-A--CGTACA-----------TATAACTA-----------------------------------------------------TTTGG----------TTATCAGTCGG-------G---CTG------------------------------CTC------------------ACGGATTTCCTGCTTATGCG-------GACACCGGAGCCCCGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GGGCCGCTTTTGTTTATCTATTG----ACGG-----------------------CGC------T--TCGGCG----GTATTATGCAAGGGAACTCAATG-TTTCG------------------------------CCGCCTTTTGGCTT---------------------------------------------------------------------------------------GAC-TAATACATGAGGATCATGAAACATTAT----CATACCA------------------------------TTGCGAGCATTG------------------------------------------------------------CAGCTACA---ACAAACACAGTGCGCCGCCCAGTAGCG---AGAGTACGCGTGTGG
droSim2 3l:9480213-9480573 + dsi_14228 AGCAGTG---G------------C------------------AGTGGGAACGGAGGAGCACGAGCACCATCAACAGCAGCAGCAGCAGCAGCAGCACCCCCCCTTGCAAT---AGGATGGCACAATTCACACTGTGAGTAT-A--CGTACA-----------TATAACTA-----------------------------------------------------TTTGG----------TTATCAGTCGG-------G---CTG------------------------------CAC------------------ACGGATTTCCTGCTTATGCG-------GACACCGGAGCCCCGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GGGCGGCTTTTGTTTATCTATTG----ACGG-----------------------CGA------T--TCGGCG----GTATTATGCAAGGGAACTCGATG-TTTCG------------------------------CCGCCTTGTGGCTT---------------------------------------------------------------------------------------GAC-TAATACATGAGGATCATGAAACATTAT----CATACCA------------------------------TTGCGAGCATTG------------------------------------------------------------CAGCTACA---ACAAACACAGTGCGCCGCCCAGTAGCG---AGAGTACGCGTGTGG
droSec2 scaffold_0:1954204-1954514 + AGCAGCAGCAG------------C------------------AGC--------------------------------------------AGCAGCACCCCCCCTTGCAAT---AGGATGGCACAATTCACACTGTGAGTAT-A--CGTACA-----------TATAACTA-----------------------------------------------------TTTGG----------TTATCAGTCGG-------G---CTG------------------------------CAC------------------ACGGATTTCCTGCTTATGCG-------GACACCGGAGCCCCGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GGGCGGCTTTTGTTTATCTATTG----ACGG-----------------------CGA------T--TCGGCG----GTATTATGCAAGGGAACTCGATG-TTTCG------------------------------CCGCCTTGTGGCTT---------------------------------------------------------------------------------------GAC-TAATACATGAGGATCATGAAACATTAT----CATACCA------------------------------T---------TG------------------------------------------------------------CAGCTACA---ACAAACACAGTGCGCCGCCCAGTAGCG---AGAGTACGCGTGTGG
droYak3 3L:2211875-2212221 - AGCAGCAGCAA------------CAGTGG------------CAGTGGGAACCGAGGAGCACCAGCACC---------------------AGTAGCACCCCCCCAGACAAT---AGGATGGCACAATTCACACTGTGAGTAT-G--CGTACA-----------TATAACTA-----------------------------------------------------TTTGG----------TTATCAGTCGG-----------CTG------------------------------CAC------------------ACGAATTTCCTGCTTATGCG-------GCCACCGGAGCCCCGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GGACGGCTTTTGTTTATCTATTG----ACGA-----------------------CGC------T--TCGGCG----GTATTATGCAAGGGAATTCGCTG-TTTCG------------------------------CCGCCTCTTGGGTT---------------------------------------------------------------------------------------GAC-TAATACATGAGGATCATGAAACATTAT----CATACCA------------------------------TGGCGAGCATTG------------------------------------------------------------CAGCTACA---ACAAGCACAGTGCGCCGCCCAGTAGCG---ACAGTACACGTGTG-
droEre2 scaffold_4784:9707596-9707942 + AGCAGCAGTGG------------C------------------AGTGGGAACGGAGGAGCACCAGCACC------AGCAC---------CAGCAACACCCCCCCGGACAAT---AGGATGGCACAATTCACACTGTGAGTAT-A--CGTACA-----------TATATCTA-----------------------------------------------------TTTGG----------TTATCAGTCGG-----------CTG------------------------------CAC------------------ACGGATTTCCTGCTTATGCG-------GCCACCGGAGCCCCGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GGGCGGCTTTTGTTTATCTATTG----ACGC-----------------------CGC------T--TCGGCG----GTATTATGCAAGTGAATTCGGTG-TTTCG------------------------------CCGCCTCTTCGGTT---------------------------------------------------------------------------------------GAC-TAATACATGAGGATCATGAAACATTAT----CATACCA------------------------------TTGCGAGCATTG------------------------------------------------------------CAGCTACA---ACAAACACAGTGCGCCGCCCAATAGCG---ACAGCACACGTGTG-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AGCAGCAGCAG------------C------------------AGCAG--------------------------------------------CAGCAGC------TTCGGC---AGCATGCCACAATTTACGCTGTGAGTAGCA--CAAAAGCTGTTATATTATATACCTGCAG----------------------------------------------------------------------AGTCCA-----------CTGCGTGTAGGGCGACGAT--AGCCGATGGT-TCCC------------------AT--------TGCTGTTGC-------------CGGG--------TG----------------------------------------------CCGCTG--------------------------------------GGTTGCGTTAAT-------------------------------------------ATAGACCTTTTGTTTATCTATTG----GTGTCGTGA------------------CGC------G--T-CGCA----ATATTATGCAAGGGAAATCGGTT-G-CCG------------------------------TCG-------------CC-----------------------------------------------------------------------------------TAC-TAATACATA--GATCGCAC-GCACTTC----------------AATTAACTATAATATGTATATATA--TA----TAT----TTCTTT----TGGTAATGCGACGTCTTTGCGGC--------------GCTGAA----TCAGCTACA---ATAAACACAATGCTCCACCCAACAACGATATACTCACGCGCGTCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ATAAACACAATGCTCCACCCA........................2211.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----TGGTAATGCGACGTCTTTG.....................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGCGACGTCTTTGCGGC--------------G..................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----GTGTCGTGA------------------CGC------G--T-CGCA----AT......................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ATAAACACAATGCTCCACCCAAC......................2411.001000100000000000000000000000000000000000000000000000000000000000
...AGCAGCAG------------C------------------AGCAG--------------------------------------------CAGCAGC------T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000001000
droMoj3
AGCAGCAGCAG------------C---------------GGCGGTGGCATCAGAG------------------------------------CAGCAGC------TCCACT---AGCATGGCACAATTTACGCTGTGAGTAG-A--CAAGCTGGGCTCTTTCAGC--A---CAGAGTCCACC-------------------------------------------------------ACGGG-------GCGAGTGGGCGACGG---------------CGAAGGCGACGG---CAC------------------CGATAGCGATCGCTGTTGCT-------GTTGCCGGGGCCTACCTAGG--------------------------------------------------A--------------------------------------GGGTGCGTTTATATATCTATTTGTATTACGTATATGTATGTATGAACATATATAGAGACAAC-TTTGTTAATCTACTTACTGAAG--------TCGTGCTATACGA---CGC------G----CGTA----ATATTATGCAAGTGAAATGGCAG---CCG------------------------------TCG-------------CC-----------------------------------------------------------------------------------TAC-TAATACATAATGATCGACACACACACACACTCACA-CATTTTAAATTAATTA----------------TTA----CAT----ATCTTT----CGGTTACTGGGTGCCT--------------------GCCGCCC----TTAGCTACA---ATAAACACAATGCTCCACCAAACAACGATATCATTACACGCGTCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................CATGGCACAATTTACGCTGTGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT----CGGTTACTGGGTGCCT--------------------GC..................................................................2111.001100000
droGri2
CGCCTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA----AAATTATGCAAGTGAAATCGGCG---CCG------------------------------TCG-------------CCTACTACACACGTATCTAGCTTGATTTATATTTAAGTATGTTTACAGTAGTTGATATCCCCGCGCTTGGTTAAATTTATT-AAGTAC-CTATATAGA--TATGTATATAT--------------------------------------------ATATA----TATGTCTT----TTTTGGGGTTATTTGGGGCCTGTGTGTC--------------TTTCCC----ATAGCTACA---ACAAACACAATGCACCGCCCAACAACGATATCATTACACGCGTCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AGCAGCGGGGT------------C------------------ACTG---------------------------------------------GAGCACCCCCAATGACAAT---ACGATGGCACAATTTACACTGTGAGTAC-G--CAAAAAGAGCTAAATTAGA--GCT-------ACCCTAAGGGGAAAACGG------------GCGGTGTAGTCCATAAATTTGGGT---------------------------------------------------------------------------------------------CAATTTACGTG-------AA-------GGTGGGCCAATGGGCGGGGCAGCGGAGAGGGTCAAAGAATCAAATTCCCCCTTAAGCTCTTT-----------------------------------------------------------------------------------------------A-GGCTTTTGTTTATCTATTG----TTGG-----------------------TGGCGG---C--G-CGTA----ATATTATGCAAGTGAAATCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................TGGGCGGGGCAGCGGAGAGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200020
...................................................................................................................................................................................................................................................................................................................................................................GCCAATGGGCGGGGCAGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001
.......................................................................................................................................................................................................................................................................................................................................TTACGTG-------AA-------GGTGGGCCAATGGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
dp5
AGCAGCATCG---------------------------------------------------------------------------------GAGCACCCCCAGTTACAAT---AGGATGGCACAATTTACACTGTGAGTAT-A--AGTATG-----------GATGAC------------------------GGTGCACAGTAACATCGCTGCCGTCCCTAAAT-GGGGTCGCTTTACGCA-------GCGCATAGCCGACAG------------------------------CGC------------------AAGAAT----------------------------------------------------------------------CAGATTAC-----------TTTGGTGTTGTTGCGCTCTGTGGCGGCACGGCTTCCGTCGA------------AT-----------------------------------------GG--AGC-TTTGTTTATCTATTG----ACGG---GACGCCGCACCGCACCACCACTC------G--T-CGCA----GTATTATGCAAGTGAAATCGACG-ACCCGA-----------------------------CCGTCTACT-----------------------------------------------------------------------------------------CAGCAC-TAATACATA--TATCATAAAA--T---------------------------------------------TAAAACCATTTTTT----TGTTGTGGTTTT------------TGGCA-TTTGAAACGG-GGCTCGA----TCAGCTACA---ACAAACATAATGCGCCGCCCAGCAACG---ACATTACACGCGTCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACATAATGCGCCGCCCAGCAACG---AC.............2711.0010010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAACGG-GGCTCGA----TCAG.....................................................2011.0010100000000
droPer2
AGCAGCATCG---------------------------------------------------------------------------------GAGCACCCCCAGTTACAAT---AGGATGGCACAATTTACACTGTGAGTAT-A--AGTATG-----------GATGAC------------------------GGTGCACAGTAACATCGGTGCCGTCCCTAAAT-GGGGTCGCTTTACGCA-------GCCCATAGCCGACAG------------------------------CGC------------------AAGAAT----------------------------------------------------------------------CAGATTAC-----------TTTGGTGTTGTTGCGCTCTGTGGCGGCACGGCTTCCGTCGA------------AT-----------------------------------------GG--AGC-TTTGTTTATCTATTG----ACGG---GACGCCGCACCGCACCACCACTC------G--T-CGCA----GTATTATGCAAGTGAAATCGACG-ACCCGA-----------------------------CCGTCTACT-----------------------------------------------------------------------------------------CAGCAC-TAATACATA--TATCATAAAAT-----------------------------------------------GAAAACCATTTTTT----TTTTGTGGTTTT------------TGGCA-TTTGAAACGG-GGCTCGA----TCAGCTACA---ACAAACATAATGCGCCGCCCAGCAACG---ACATTACACGCGTCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................CAGTTACAAT---AGGATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
droAna3
AGCAGCCGCAG------------C------------------AGTGG---------------------------------------------------------GACAAT---AGGATGGCACAATTCACGCTGTGAGTAT-C-------------------------TG-----------------------------------------------------TTT-G----------TTATCG----------------CTG---------------------------CACCACGCCGCAAAGTGGAACGGCCTGGAATTCC----GTAGAG-------TC--------TGCCGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GG--AGC-TTTGTTTATCTATTG----GCGC---GA------------------CGC------T--TC--------GGATTATGCAAGTGAAATCAGTA-A--------------------------------------------------AC-----------------------------------------------------------------------------------CAC-TAACACAA--TGATCATGA-ACATTAC----CATTC-G---------------------------------------------------------TTTT------------CGGCACTTTGTAATGGCGGCTCAA----TTAGCTACA---ATAAACACAGTGCGCCGCCCA---GCG---ACAGTACGCGAGTGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACACAGTGCGCCGCCCA---GC...................2312.002020000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGCCGCCCA---GCG---ACAG...........1911.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACA---ATAAACACAGTGCGCCGCC..........................2411.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTG----GCGC---GA------------------CGC------T--TC--------GGAT....................................................................................................................................................................................................................................................................................................................................................................2111.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGCCCA---GCG---ACAGTACGCGAG...2411.001100000
..............................................................................................................................................................................................................................................................................................................................AATTCC----GTAGAG-------TC--------TGCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
AGCAGCCGCAG------------C------------------AGTGG---------------------------------------------------------GACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
......................................................................................................................................TGAGTAT-C-------------------------TG-----------------------------------------------------TTT-G----------TTATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19100.101000100
droBip1
AGCAGCCGCAG------------C------------------AGTGG---------------------------------------------------------GACAAT---AGGATGGCACAATTCACGCTGTGAGTAT-C-------------------------TG-----------------------------------------------------TTT-G----------TTATCG----------------CTG---------------------------CACCACGTCGCAAAGTGGAGCAGCCTGGCATAAT----GTTGAG-------TC--------TGGCGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GG--AGC-TTTGTTTATCTATTG----GCGC---GA------------------CGC------T--TC--------GGATTATGCAAGTGAAATCGGTA-A--------------------------------------------------AC-----------------------------------------------------------------------------------CAC-TAACACAA--TGATCATGA-ACATTAC----CATTC-G---------------------------------------------------------TTTT------------CGGCACTTTGTAATGGCGTCTCAA----TTAGCTACA---ATAAACACAGTGCGCCGCCCA---GCG---ACAATACGCGTGTGGSizeHit CountTotal NormTotal
No Reads
droKik1
GGCAGCAGCAG------------C------------------AGCAGCAGTGGAGGAGCACCGGCACC---------------------AGCAGCACCCCTCCGGACAAT---AGGATGGCGCAATTCACACTGTGAGTAT-A--TG-------------------------------------------------------------------------------AG----------TTATCAGTGGG-----------CA-------------------------------CCC------------------ACGGATTCCCC-----------------------------CGGCAA----------------------------------------------CCGCTG--------------------------------------GGGCGAGCTTAT------------------------------------------------GC-TTTGTTTATCTATTA----ACGG-----------------------CGCCGCCGCG--T-CGCCGTGTGTATTATGCAAGTGGAAACCGAAAC-CCGAAACCC----------------------------------AAACAAG--------------------------------------------------------------------------------ACAAAAC-TAATACGT--AGATCATGAACCATTAC----CAT----------------------------------TTGCG----------------------------------------GCTCTC--------CTGCTTAATTATGTAGGTACA---ACAAACACAGTGCGCCGCCGGGCAGCGGCGATAGTACGCGCGTCGSizeHit CountTotal NormTotal
No Reads
droFic1
AGCAGCAGTGGCAGCAGCAGCAGCAGTGG------------CAGTGGGACTCGG-----ATT------------GGGATT----GGAGGAGGAGCACCCCCCCGGACAATAGTAGGATGGCACAATTCACACTGTGAGTAT-A-------------------TATATCTA-----------------------------------------------------GTTGG----------TTATCAGTCGG-----------CAG---------------TG----------CAGCAC------------------TTGGATTTCCTGCTTTTGCG-------AC--------CGTTGTCAATG-----------------------------------------------------------------------------------------G-----------------------------------------------------GGG-AGCTTTTGTTTATCTATTG----ACGG-----------------------CGC------TCGACGGCG----GTATTATGCAAGTGAATTCGGT--------------------------------------------------TGGAG-----------------------------------------------------------------------------------GAC-TAATACATATAGATCATGAAACATTAA----CATA-CA------------------------------TTACGAG-----------------------------------------------------------------CAGCTACA---ACAAACACAGCGCGCCGCCCAGCAGCG---ATAGTACGCGCGTGGSizeHit CountTotal NormTotal
No Reads
droEle1
AGTGGCAGTGG------------C------------------AGTGGGATCGG-----CATCGGCAAC------GGGAAC-------GGAGGAGCACCCCCTCGGACAAT---AGGATGGCACAATTCACACTGTGAGTAT-A-------------------TATATCCA-----------------------------------------------------TTTGG----------TTATCAGTAG-----TGGG---CTG---------------TG----------CAGCAC------------------ATGGATTTCCTGCTTATGCG-------AC---C----GCCTGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------AAG-AGCTTTTGTTTATCTATTG----GCGG-----------------------CGC------T--T-GGTC----GTATTATGCAAGTGAAATCGGTG-GTTCAG---------------------------------TTGTTGGGTTCGGG-----------------------------------------------------------------------------------GAC-TAATACATATGGGTCATGAAACATTAC----CATG-CA------------------------------TTACGAG-----------------------------------------------------------------CAGCTACA---ACAAACATAGTGCGCCGCCCAGCAGCG---ACAGTACGCGCGTGGSizeHit CountTotal NormTotal
No Reads
droRho1
AGTGGGATCGG------------C------------------AG------CGGAG------------------------------------GAGCACCCCCCCGGACAAT---AGGATGGCACAATTCACACTGTGAGTAT-A---------------------TATCTT-----------------------------------------------------TCTGG----------TTATCAGTGGG-----------CTG---------------TG----------CAGCGC------------------ATGGATTTCCTGCTTATGCG-------AC--------TGCTGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GGA-AGCTTTTGTTTATCTATTG----ACGG-----------------------CGC------T--T-TGCA----ATATTACGCAAGTGAAATCGGTA-GTT---------------------------------------GT------GGG-----------------------------------------------------------------------------------GAC-TAAGACATGTAGATCATAAAACATTAC----CATG-TA------------------------------TTACGAG-----------------------------------------------------------------CAGCTACA---ACAAACACAGTACGCCGCCCAACAGCG---ACAGTACGCGTGTGGSizeHit CountTotal NormTotal
No Reads
droBia1
AGAAGCAGCAG------------AAGTGGCAGTGGGATCGTCAGTGGGATCAGAGGAGCAAC---------------------------ACCATCACCCCCCCGGACAGT---AGGATGGCACAATTCACACTGTGAGTAT-A--CACTTA-----------TGTATCTT-----------------------------------------------------TTTGG----------TTATCAGTCGGCCAGGGGG---CTG---------------------------CAGCAC------------------ATGGATTTCCTGCTTTTGCCTTGGCTCGTCCCCGTTCCCCTGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GGG-AGCTTTTGTTTATCTATTG----ACGG-----------------------CGC------T--T-GGCG----GTATTATGCAAGGGAATTCGCTG-ACTGG-GTTTCGGGTGTTTGGGTGCTTGGGTGTCTGGGTATCGT------GGG-----------------------------------------------------------------------------------GAC-TAGTACATTTAGATCATGGAGCATTAC----CATAGCA------------------------------TTACGAGCATTG------------------------------------------------------------CAGCTACA---ACAAACACAGTGCGCCGCCCAGCAGCG---ACAGTACGCGCGTGGSizeHit CountTotal NormTotal
No Reads
droTak1
AGTGG------------------------------------------GATCGGA---------------------------------------GCACCAC------CAAT---AGGATGGCACAATTCACACTGTGAGTAT-ATATGTACA-----------TATATCTT-----------------------------------------------------TTTGG----------TTATCAGTCGG-----------CTG--------------------------------C------------------ATGGATTTCCTGC------------------------CCCTGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GGA-AGCTTTTGTTTATCTATTG----ACGC-----------------------CGC------T--T-GGCG----GTATTATGCAAGGGAATTCGCTG-CTTGG-GTTTC----------------------------------AGTTGGGG-------------------------------------------------------------------------------GGGTAAC-TAATATAT------------------------------------------------------------TTACGGGCCTTA------------------------------------------------------------CAGCTACAACAACAAACACAGTGGGCCGCCCAGCAGCG---ACAG--------TCGSizeHit CountTotal NormTotal
No Reads
droEug1
GGCAGTGGGAA------------C---------------GTCAGTGGGATCGGAGGAGCATCGGCACC------------------------AGCAGCCCCCCGGACAAT---AGGATGGCACAATTCACACTGTGAGTAT-A-------------------TATATCTT-----------------------------------------------------TTTGG----------TTATCAGTCGG-----------TTGCGC------------TG----------CACCAC------------------ATGGATTTCCTGCTTTTGCG-------GA-------CCCTTGTCATT------------------------------------------------------------------------------------------------------------------------------------------------GGA-AGCTTTTGTTTATCTATTG----ACGC-----------------------CGC------T--T-TGCG----GTATTATGCAAGTGAATTCGGTG-TTTGG---------------------------------------G-GTTTGGG-----------------------------------------------------------------------------------GACTTAATACATATAGATCATGAAACATTAT----CATATCA------------------------------TTGCGAGCATTA------------------------------------------------------------CAGCTACA---ACAAACACAGTTCGCCGCCAAATAGCG---ACAGTACGCGCGTGGSizeHit CountTotal NormTotal
No Reads
dm3
GGCAGTG---G------------C------------------AGTGGGAACGGAGGAGCACCAGCACC------AGCACCATCAGCAGCAGCAGCACCCCCCCTTGCAAT---AGGATGGCACAATTCACACTGTGAGTAT-A--CGTACA-----------TATAACTA-----------------------------------------------------TTTGG----------TTATCAGTCGG-------G---CTG------------------------------CTC------------------ACGGATTTCCTGCTTATGCG-------GACACCGGAGCCCCGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GGGCCGCTTTTGTTTATCTATTG----ACGG-----------------------CGC------T--TCGGCG----GTATTATGCAAGGGAACTCAATG-TTTCG------------------------------CCGCCTTTTGGCTT---------------------------------------------------------------------------------------GAC-TAATACATGAGGATCATGAAACATTAT----CATACCA------------------------------TTGCGAGCATTG------------------------------------------------------------CAGCTACA---ACAAACACAGTGCGCCGCCCAGTAGCG---AGAGTACGCGTGTGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCA------------------------------TTGCGAGCATTG------------------------------------------------------------CAG.....................................................2012.0020000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCCAGTAGCG---AGAGTACGCGTG...2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACACTGTGAGTAT-A--CGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...................................................................................................CCCCTTGCAAT---AGGATGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTTTTGTTTATCTATTG----.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATTG----ACGG-----------------------CGC------T--TCGGCG----GT......................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCCAGTAGCG---AGAGTACGCGTT...2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AGTG---G------------C------------------AGTGGGAACGGAGGAGCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
............................................................................................................AT---AGGATGGCACAATTCACACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................CTGCTTATGCG-------GACACCGGAGCCCCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GCAGTG---G------------C------------------AGTGGGAACGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACACAGTGCGCCGCCC.........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......G---G------------C------------------AGTGGGAACGGAGGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................................AGTGGGAACGGAGGAGCACCAGCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAT----CATACCA------------------------------TTGCGAGCATTG------------------------------------------------------------CA......................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
..........................................AGTGGGAACGGAGGAGCACCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GTG---G------------C------------------AGTGGGAACGGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAACATTAT----CATACCA------------------------------TTGCGAGCA.......................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................................................................................CTA-----------------------------------------------------TTTGG----------TTATCAGTCGG-------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCG---AGAGTACG.......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTG----ACGG-----------------------CGC------T--TCGGCG----GTAT....................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TCAGTCGG-------G---CTG------------------------------CTC------------------ACGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTG----ACGG-----------------------CGC------T--TCGGCG----GTAT....................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................ACACCGGAGCCCCGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCG---AGAGTACGCGTGT..2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................GCACCATCAGCAGCAGCAGCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................ACC------AGCACCATCAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................................CACCATCAGCAGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.3350000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................AGCACCATCAGCAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
AGCAGTG---G------------C------------------AGTGGGAACGGAGGAGCACGAGCACCATCAACAGCAGCAGCAGCAGCAGCAGCACCCCCCCTTGCAAT---AGGATGGCACAATTCACACTGTGAGTAT-A--CGTACA-----------TATAACTA-----------------------------------------------------TTTGG----------TTATCAGTCGG-------G---CTG------------------------------CAC------------------ACGGATTTCCTGCTTATGCG-------GACACCGGAGCCCCGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GGGCGGCTTTTGTTTATCTATTG----ACGG-----------------------CGA------T--TCGGCG----GTATTATGCAAGGGAACTCGATG-TTTCG------------------------------CCGCCTTGTGGCTT---------------------------------------------------------------------------------------GAC-TAATACATGAGGATCATGAAACATTAT----CATACCA------------------------------TTGCGAGCATTG------------------------------------------------------------CAGCTACA---ACAAACACAGTGCGCCGCCCAGTAGCG---AGAGTACGCGTGTGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................AACGGAGGAGCACGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1513.00300000000102000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCGCCGCCCAGTAGCG---AGAGTACGC......2811.00100010000000000000
..................................................................................................................................................................................................................................................CAGTCGG-------G---CTG------------------------------CAC------------------ACGGATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
........................................................................................................TGCAAT---AGGATGGCACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
..............................................GGAACGGAGGAGCACGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
..................................................................................................................................................................................................................................GG----------TTATCAGTCGG-------G---CTG------------------------------CAC------------------ACGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
................................................AACGGAGGAGCACGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1660.17100000000100000000
................................................AACGGAGGAGCACGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.10200000000010001000
...........................................................................GCAGCAGCAGCAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.10200000000002000000
.................................................ACGGAGGAGCACGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15150.07100000001000000000
droSec2
AGCAGCAGCAG------------C------------------AGC--------------------------------------------AGCAGCACCCCCCCTTGCAAT---AGGATGGCACAATTCACACTGTGAGTAT-A--CGTACA-----------TATAACTA-----------------------------------------------------TTTGG----------TTATCAGTCGG-------G---CTG------------------------------CAC------------------ACGGATTTCCTGCTTATGCG-------GACACCGGAGCCCCGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GGGCGGCTTTTGTTTATCTATTG----ACGG-----------------------CGA------T--TCGGCG----GTATTATGCAAGGGAACTCGATG-TTTCG------------------------------CCGCCTTGTGGCTT---------------------------------------------------------------------------------------GAC-TAATACATGAGGATCATGAAACATTAT----CATACCA------------------------------T---------TG------------------------------------------------------------CAGCTACA---ACAAACACAGTGCGCCGCCCAGTAGCG---AGAGTACGCGTGTGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCCAGTAGCG---AGAGTACGCG.....2411.0011000
...................................................................................................................................................................................................................................................................................................................................................................GTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GGGCGGCTTTTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
droYak3
AGCAGCAGCAA------------CAGTGG------------CAGTGGGAACCGAGGAGCACCAGCACC---------------------AGTAGCACCCCCCCAGACAAT---AGGATGGCACAATTCACACTGTGAGTAT-G--CGTACA-----------TATAACTA-----------------------------------------------------TTTGG----------TTATCAGTCGG-----------CTG------------------------------CAC------------------ACGAATTTCCTGCTTATGCG-------GCCACCGGAGCCCCGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GGACGGCTTTTGTTTATCTATTG----ACGA-----------------------CGC------T--TCGGCG----GTATTATGCAAGGGAATTCGCTG-TTTCG------------------------------CCGCCTCTTGGGTT---------------------------------------------------------------------------------------GAC-TAATACATGAGGATCATGAAACATTAT----CATACCA------------------------------TGGCGAGCATTG------------------------------------------------------------CAGCTACA---ACAAGCACAGTGCGCCGCCCAGTAGCG---ACAGTACACGTGTG-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................ATCAGTCGG-----------CTG------------------------------CAC------------------ACGAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
AGCAGCAGCAA------------CAGTGG------------CAGTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---ACAAGCACAGTGCGCCGCC..........................2211.00101000000000
droEre2
AGCAGCAGTGG------------C------------------AGTGGGAACGGAGGAGCACCAGCACC------AGCAC---------CAGCAACACCCCCCCGGACAAT---AGGATGGCACAATTCACACTGTGAGTAT-A--CGTACA-----------TATATCTA-----------------------------------------------------TTTGG----------TTATCAGTCGG-----------CTG------------------------------CAC------------------ACGGATTTCCTGCTTATGCG-------GCCACCGGAGCCCCGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------GGGCGGCTTTTGTTTATCTATTG----ACGC-----------------------CGC------T--TCGGCG----GTATTATGCAAGTGAATTCGGTG-TTTCG------------------------------CCGCCTCTTCGGTT---------------------------------------------------------------------------------------GAC-TAATACATGAGGATCATGAAACATTAT----CATACCA------------------------------TTGCGAGCATTG------------------------------------------------------------CAGCTACA---ACAAACACAGTGCGCCGCCCAATAGCG---ACAGCACACGTGTG-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......GTGG------------C------------------AGTGGGAACGGAGGAGCACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.........GG------------C------------------AGTGGGAACGGAGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
...........................................................................................................AAT---AGGATGGCACAATTCACACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
............................................................CCAGCACC------AGCAC---------CAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0511000000

Generated: 05/19/2015 at 09:23 PM