ID:

dvi_19030

 Coordinate:

scaffold_13049:8632340-8632490 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-50.2 -49.5 -49.5

Flybase annnotation

exon [dvir_GLEANR_12123:1]; CDS [Dvir\GJ12133-cds]; intron [Dvir\GJ12133-in]

Repeatable elements

NameClassFamilyStrand
Gypsy8-I_Dpse-intLTRGypsy-

Sense Strand Reads

-#################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AATGGGCGCACAGTGGAGACTGATAAACCAAAACTACAAGAATATGGAGGGTAAATTTTGTTCAATATTGATAAGAATTTTCATTAAACTTGACTGACAACGGGCGTTGGCAATTGTTGCTGCCGCAGCAGCAGCAGCAGCAGCAACAGACGTCAGCAACAGCGGCAACATGTTGCACGTAGCTGTCAATGCTGTCATCATCAGCATTGTTGTTGCTGTTGTTGCTGTTGTTGCTGTTGCTGCGGTTGCAA
**************************************************..(((((((..(((....)))..)))))))..........(((.(((((....(((((((((.((((((((((.((.((....)).)).))))))))))((((..((((((.........))))))))))...))))))))))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060667
160_females_carcasses_total
 M047
female body
 M028
head
 V116
male body		 M027
male body		 V053
head
 SRR060683
160_testes_total
 SRR060671
9x160_males_carcasses_total
 M061
embryo
 SRR060663
160_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060689
160x9_testes_total
 V047
embryo
 SRR060664
9_males_carcasses_total
 SRR060658
140_ovaries_total
 SRR060655
9x160_testes_total
 SRR060674
9x140_ovaries_total
.............................................................................................................................................AGCAACAGACGTCAGCAACAG......................................................................................... 21 0 1 8.00 8 0 4 1 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................AGCAGCAGCAGCAACAGACGTC................................................................................................. 22 0 1 5.00 5 0 2 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............GTGGAGACTGATAAACCAAAACT........................................................................................................................................................................................................................ 23 0 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.ATGGGCGCACAGTGGAGACTGATAAAC............................................................................................................................................................................................................................... 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......CGCACAGTGGAGACTGATAAACC.............................................................................................................................................................................................................................. 23 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.ATGGGCGCACAGTGGAGACTGATAA................................................................................................................................................................................................................................. 25 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............GTGGAGACTGATAAACCAAA........................................................................................................................................................................................................................... 20 0 1 2.00 2 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.ATGGGCGCACAGTGGAGACTGATA.................................................................................................................................................................................................................................. 24 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.ATGGGCGCACAGTGGAGACT...................................................................................................................................................................................................................................... 20 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................AAACCAAAACTACAAGAATATGGAGGGT....................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GCACAGTGGAGACTGATAAACCAAAACT........................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GCACAGTGGAGACTGATAAACCAAA........................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................ACTACAAGAATATGGAGGGTT...................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..TGGGCGCACAGTGGAGACTGATAAACC.............................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.ATGGGCGCACAGTGGAGCCTGATA.................................................................................................................................................................................................................................. 24 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................AGCAACAGACGTCAGCAACAGC........................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......GCACAGTGGAGACTGATA.................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........CAGTGGAGACTGATAAACC.............................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........CAGTGGAGACTGATAAACCAAAAC......................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AATGGGCGCACAGTGGAGACTGATAA................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........AGTGGAGACTGATAAACC.............................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTGCTGTCATCATCAGAATTG.......................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................ACAAGAATATGGAGGGTTAC.................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AAACTACAAGAATATGGAGGGTTAC.................................................................................................................................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................AGCAGCAACAGACGTCAGC.............................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................AGCAACAGACGTCAGCAAC........................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AGCAACAGCGGCAACATGTTG............................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................AGCTACAAGAATATGGAGGGT....................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................CAAAACTACAAGAATATGGAGGGTTAC.................................................................................................................................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AACGGGCGCACAGTGGAGACTG..................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................AGAAGCAGCAGCAACAGACGTC................................................................................................. 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................AAACTACAAGAATATGGAGGGTT...................................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.ATGGGCGCACAGTGGAGACTGATAAACC.............................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...GGGGGCACAGTGGAGACT...................................................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................AAAACTACAAGAATATGGAGGGTTACA................................................................................................................................................................................................... 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.ATGGGCGCACAGTGGAGACTGATAAA................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.ATGGGCGCACAGTGGAGACTGAT................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................AACTACAAGAATATGGAGGGTT...................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GCAGCAGCAGCAACAGACGTC................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TACAAGAATATGGAGGGTTACA................................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................AACTACAAGAATATGGAGGGTTACA................................................................................................................................................................................................... 25 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................AGCAACAGACGCCAGCAACAG......................................................................................... 21 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................ACTACAAGAATATGGAGGGTTACA................................................................................................................................................................................................... 24 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TTGCTGTTGCTGCGGTTGC.. 19 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TGCTGTCATCATCAGAATTGAA........................................ 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................AAGAATATGGAGGGTTAC.................................................................................................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............GTGGAGACTTATGAAGCAA............................................................................................................................................................................................................................ 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0
...........................................................................................................................................................................................................GCATTGTTGTTGCTGTTGT............................. 19 0 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GCAGCAGCAGCAACAGACG................................................................................................... 19 0 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GGGGGTTGGCAATTGATGTT.................................................................................................................................. 20 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................CAGCAGCAGCAGCAGCAGCAA......................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TTACCCGCGTGTCACCTCTGACTATTTGGTTTTGATGTTCTTATACCTCCCATTTAAAACAAGTTATAACTATTCTTAAAAGTAATTTGAACTGACTGTTGCCCGCAACCGTTAACAACGACGGCGTCGTCGTCGTCGTCGTCGTTGTCTGCAGTCGTTGTCGCCGTTGTACAACGTGCATCGACAGTTACGACAGTAGTAGTCGTAACAACAACGACAACAACGACAACAACGACAACGACGCCAACGTT
**************************************************..(((((((..(((....)))..)))))))..........(((.(((((....(((((((((.((((((((((.((.((....)).)).))))))))))((((..((((((.........))))))))))...))))))))))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060665
9_females_carcasses_total
 SRR060687
9_0-2h_embryos_total
 V053
head
 SRR060678
9x140_testes_total
 SRR060663
160_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060664
9_males_carcasses_total
 SRR060654
160x9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060677
Argx9_ovaries_total
 M027
male body		 M047
female body
 M061
embryo
 SRR060667
160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060679
140x9_testes_total
..............................................................................................................................................................................................CGACAGTAGTAGTCTTAACTA........................................ 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ACGACAGTAGTAGTCTTAAC.......................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AACGACAGTAGTAGTCTTAAC.......................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................CAACGACAGTAGTAGTCTTAA........................................... 21 3 11 0.27 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........TTACCTCTGGTTATTTGGTTTT.......................................................................................................................................................................................................................... 22 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................GACAGTAGTAGTCTTAACTAA....................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CGACAACAACGACAACGACGC....... 21 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GCATCGATTGTCACGACAGT...................................................... 20 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AACGACAGTAGTAGTCTTA............................................ 19 2 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................TGGTCTTGATGTCCTTAT............................................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ACAACAACGACAACAACGACA....................... 21 0 20 0.15 3 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0
......................................................................................................................................GTGGTCGTAGTTGTCTTCAGT................................................................................................ 21 3 14 0.14 2 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GCATCGATTGGTACGACAGT...................................................... 20 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CAACAACGACAACAACGACAA............. 21 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1
.......................................................................................................................................TCGTCGTAGTTGTCTTCAGT................................................................................................ 20 2 12 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ACGACAACAACGACAACCACGC....... 22 1 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CAACGACAACAACGACAACAACGACAAC............ 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................CAACAACGACAACAACGACA....................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................CCAGCCATGTAAAACAAGT........................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AACGACAACAACGACAACAACGA................ 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:8632290-8632540 - dvi_19030 A-------ATGGGCGCACAGTGGAGACTGATAAACCAAAACTACAAGAATATGGAGGGTAAATTT-----------------------------------------------TGTTCAAT-------ATTGATAAG--------------AAT---TTT--C------------A--TTAA-A----CTTGACTGACAACG------GGCGTTGGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGTTGCTGCC-------GCA------------GCAGCAGCAGCAGCA------GCAACA------G--------------------AC------GTCAGCAACAGCGGCAACATGTTGCACGTAGCT---------------------------------GT------------------------------------------CAATGCTGTCATCATC------------AGCATTG----TTGT-------TGCTGTTGTTG-----CTGTTGTTGCTGTTGCTGCGGT-----------------TGCAA
droMoj3 scaffold_6680:6709445-6709690 + G-------ATGGGCGCACAGTGGAGACTGATTAACCAGAACTATAAGAATATGGAGGGTAAACATATT-G--------------------------------------------------------------CATACTCATGATTCAACT--T---ATT--C------------AACTTAA-T----TTTCATTGAT--TT--------------------------------------------------------------------ATTCGGCGA--------GCAATTGTTGCTGC---------------------------------------------------TGCTGTTG--------TGGCAAGGC---------------------AGGC--------------------------------------------------------------GCTG----ATGTTGCTGCT-------GCA------------CC---------ATCAGACACAAC---------------------------------------AAC-----------------------------------------AGCAACAG---------CAATAACTAGATTATCAT----------------------------------------------C---A---------GCATA--------------GCCC------TTGTAGCT-----GTTGCTG---CTGTAATTGC-------------------
droGri2 scaffold_14853:4056587-4056809 + A--------------------------------------GCTACAAGACTCTGCTGCACAAAAATTG---------------------------------------------TGGCCAAA-------ATGTGTAGGCA------------ATT---TGT--C------------A--ATATGTTATGA--------CAACGACAACTGGCAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGACAACAGCAGCAGCA-------GCA------------GT------------A------GCAACA------A------------------------------------------------CAT-CGGGCA-------------------------------CAGCAGCAA---CATTATTGACATTAGGGCACCTGTTTGTTTGCCAACTTA-----------------AAA-CTATGATTA-------CCGT-TGTTGTTG------TTGTTGTT-----GTTGCTG---TTGCTGTTGC-------------------
droWil2 scf2_1100000004902:8408035-8408191 + TT--AAACTTGGCCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA------AACGTCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTTGCAGCA-------GCA------------GCAGCAGCCGCAGCA------GCAAAACATCGTG--------------------AA------GCCAGCAACAAAAAC----------ACACAAT-----------------------------------T------------------------------------------CAATTTTATT-TCATT------------TACTTTGATGTCGGTGTGTTGTTG------TAGTTGTT-----GTTGCTG---CTGCGGTTGC-------------------
dp5 XR_group6:9839191-9839408 - dps_3130 G-------ATGGGTGCCCAGTGGAAGATCATTAACCAAAACTACAAGAATCTGGAGGGTAAACACACATACACACACACATACACACACACACTCGTTATCTCCCTCTCTCTCTAT----AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAGA----------------------------------------------------------------------------------------TAAGT-CATGTGGCTGGT-------GTG------------CC----------TTG------GCAACA------T------------------------------------------------GTTGCATGTGGCT---------------------------------GAGG---CAACAT----------------------------------------------CATCACC-TTATGAGTA-----------------------ATGTCA-----CATTCCTTGCTTTCGACTCGTT-----------------T----
droPer2 scaffold_61:118225-118430 - G-------ATGGGTGCCCAGTGGAAGATCATTAACCAAAACTACAAGAATCTGGAGGGTAAACACACACACACA------------CACACACTCGCTATCTCCCTCTCTCTCTAT----AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAGA----------------------------------------------------------------------------------------TAAGT-CATGTGGCTGGT-------GTG------------CC----------TTG------GCAACA------T------------------------------------------------GTTGCATGTGGCT---------------------------------GGGG---CAACAT----------------------------------------------CATCACC-TTATGAGTA-----------------------ATGTCA-----CATTCCTTGCTTTCGACTCGTT-----------------T----
droAna3 scaffold_13340:9204560-9204732 - C-------A---------------ATATCAGTAACAATTCCTATAAA--GCTGG----------------------------------------------------------------------------------------------------------------------------------------------CTTTG------GGCGAGCGCAGTCAGCGACAGCATCA--TAAAAAGTTGC-----------------------------------------------------------------AGCTACA-------------------------------------------------------------------------------------------------------CT--------------------CGAAACGG------CAATTAGTGGAA-CATGTTGCTAAT-------GCT------------GC------------C------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------A-------TTGT-------CGCAGTGGCTGTTGCT-----GTTGCTG---------TTGCTGTTGGCGATGTGTCGCAA
droBip1 scf7180000396431:1488692-1488882 - T-------TCGATGTTGCA-------------A-----------------------------------------------------------------------------------------------------CT--------------AGT---TTC--C------------AAATTAT-C----TTTGGTTGTA--TT--------------------------------------------------------------------GCTATTGGT--------GTTACTGTTGCTGTCGCCAAATGCCAGCAACATGCCAGCCTGAGACTTGAGCGACATTTCAGCATTGCTGTTGCTTATACTTGGTAGTGT-----------------------------------------------------------------------------------------TGGT-GTTGTTGTTGGT-------GTT------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG-----CAGCTGTTTCTGATGTTGCTGT-----------------TGCAG
droKik1 scf7180000302486:2414765-2414981 + C-------ATGGTCGCACAGTGGAAGATCATCAACGAGAACTACAAGAATCTGGAGGGTAAAGAC-------------------------------------------------------------------CACACTAAAAGCGTATCC--CATTT--A---------------AC---------------------------------------------------------------------------------------------------CA--------CTAGCTGTTG-------------------------------------------------------------------------------TTGGTGTTGTTGTTGGTGATGTTGGT--------------------------------------------------------------GTTGGT-GATGTTGCCAAT-------GCA------------GC------------GGACGAGGCAACA------TGTTGCCAA----------------------------------------------AGTG------TGCTGATTG------G---------GAGCAACCAACCCATCGT----------------------------------------------CAT------CATGAGTA-----------------------ATGTCA-----A-------------------------------------------
droFic1 scf7180000453807:982747-982932 + AT--AACCATGGTTGCTCAGTGGAAGATCATCAACGAGAACTACAAAAATCTGGAGGGTAAACACG-------------------------------------------------------------ATTT--ATTCTAT---------------TT--ACTATATACTTTTTG------------------------------------------------------------------------------------------------------------CCAT-----T-------------------------------------------------------------------------GCTGAT-------------------------------------------------------------------------------------------ATCGCAG-AATGTTGCTGGT-------GCA------------GC------------G------GCAACA------T------------------------------------------------GTTGCACGTA-------------------------------CGGCGACAA---CATCGTCGC-------------------------------------------CATCACC-CAATGAGTA-----------------------ATGTCA-----A-------------------------------------------
droEle1 scf7180000490564:619117-619370 + C-------ATGGTCGCTCAGTGGAATATCATCAACGCAAACTACAAAAATCTGGAGGGTAAACACA-------------------------------------------------------------ATTTTCACACTT-----------------GACAGCATAC--CCTTAT--------CCATAT------------C--------------------------------------------------------------------CATATCCATG--TCCAT-------------------------------------------------------------------------------------------------------------ATCCATCTTGCAATATATCA---AAATTGAA--------------------TAAGA------TT-CGAG-GCAC-TATGTTGCTGGT-------GCA------------GC------------A------GCAACA------TGTTGCTGCGGTGCACGTAGAACGTCGACGAC-----------------------------------------GACGACGA---------CGACGACGA---CATCCT----------------------------------------------CATCACC-CCATGAGTA-----------------------ATGTCA-----A-------------------------------------------
droRho1 scf7180000776514:19846-20033 + A----ACCATGGTCGCTCAGTGGAAGATCATCAACGCAAACTACAAAAATCTGGAGGGTAAACACAA------------------------------------------------------------ATTTTCACACTATATCCAT----------------------------------------------------------------------------------------------------------------------------------AT----CCAT-----A-------------------------------------------------------------------------TCCAATATAAA-----------------------------------------------------------------------------------------GTGT-AATGTTGCTGGT-------GCA------------GC------------G------GCAACA------TGTTGCTGCGGTGCACTT-------------------------------------AGAA-------------------------------CGACGACGA---CATCCT----------------------------------------------CATCACC-CCATGAGTA-----------------------ATGTCA-----A-------------------------------------------
droBia1 scf7180000302428:7946226-7946489 - AT--AACCATGGTCGCCCAGTGGAAAATCATCAACGAGAACTACAAAAATCTGGAGGGTAAACACACA-----------------------------------------------------------ATTTCCATACCAT-----------------ATATCACAG---------------------------------------------------------------------------------------------------------------------------GCTGTTC------------------------CAAATC-GC------------------------------------TTCA-------ATGCGATG----------------------------------CGATCGGATACGATGCGATGGGATGCGATG------CCATTTTGAGCGCAC-CATGTTGCTGGTT------GCA------------GC------------G------GCAACA------T------------------------------------------------GTTGCACGCAGAAGCGCA-TCATCAGCAGCATCACCAGCATCATCCCCAT---GATCCG----------------------------------------------CATCACC-CCATGAGTA-----------------------ATGTCA-----A-------------------------------------------
droTak1 scf7180000414372:12503-12726 - ATATAACCATGGTCGCTCAGTGGAAAATCATCAACGAGAACTACAAAAATCTGGAGGGTAAACACA-------------------------------------------------------------ATTTTCACACTAT-----------------ATATCACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA----------------------------------------ATATTGC--CGATCCCATGCGAGCCGATTCATTCCGAAC------CCATTTTGACCGCAC-AATGTTGCTGGT-------GCA------------GC------------G------GCAACA------TGTTGCCGCGT----------------------------------------TGCACGTA-------------------------------CATCCTCAT---CATCCC----------------------------------------------CATCACC-CCATGAGTA-----------------------ATGTCA-----A-------------------------------------------
droEug1 scf7180000409711:1679924-1680149 + C-------ATGGTGGCTCAGTGGAAGATCATCAATGCGAACTACAAAAATCTGGAGGGTAAACACACACTCACA------------C------------------------TCTAT----ATATAATATTTTCACGCTC-----------------TATATAAT------------------CTATAA------------T--------------------------------------------------------------------CATA----------------------------------------------------------------------------------------------------------------------------------------GTATGGC--CAA------------------AAGTCAACC------CCTTTTTAATAGAAC-AATGTTGCTAAT-------GCA------------GC------------G------GCAACA------TGTTGCCGCGT----------------------------------------TGCACGTA-------------------------------CCACGACGA---CATCCT----------------------------------------------CATCACC-CCATGAGTA-----------------------ATGTCA-----A-------------------------------------------
dm3 chrX:17214460-17214642 - A-------ATTTTCT-------------------------------------GCAAC----------------------------------------------------------------------ATTTACGCG--------------CTT---TTT--C------------G--CTCATTTATGG----CCGGCC-----AACATGCAACA-AGACCAACTGCAGCAACAGTTGCAACTTTGCAGCAGAACCAGCAACATCAGCAACTGCTGCATG--TGCAT-------------------------------------------------------------------------------------------------------------GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCT---------------------------------GGTG---CAACAT----------------------------------------------T---------------G-------TTGT-------TGGTTCTGCTG-----CTGTTGCTGCTGTTGCTGCTGT-----------------C----
droSim2 3l:9582882-9583099 + dsi_19022 C-------ATGGTCGCTCAGTGGAAAATCATCAACGAGAACTACAAAAATCTGGAGGGTAAACACACACACA-----------------------------------------------------TCATTTTCACACCACCCCCAT----------------------------------------------------------------------------------------------------------------------------------ATG--TGCAT-------------------------------------------------------------------------------------------------------------GT--ATATAGCAATATATCGCCCCGATCCCC----------------CCGAAACGA------TTTCGAGCAAACAAATGTTGCCAAT-------GCA------------GC------------A------GCAACA------T------------------------------------------------GTTGCAAGTA-------------------------------CAGCGACGA---CATCCT----------------------------------------------CGTCACC-CCATGAGTA-----------------------ATGTCA-----A-------------------------------------------
droSec2 scaffold_0:2055995-2056222 + AT--AACCATGGTCGCTCAGTGGAAAATCATCAACGAGAACTACAAAAATCTGGAGGGTAAACACACACACA-----------------------------------------------------TCATTTTCACACCAACCCCAT----------------------------------------------------------------------------------------------------------------------------------ATG--TGCAT-------------------------------------------------------------------------------------------------------------GT--ATATAGACATATATCGCCCCGATCCCC-----------------CAAAACGATTATTATTTCGAGCAAACAAATGTTGCCAAT-------GCA------------AC------------A------GCAACA------T------------------------------------------------GTTGCAAGTA-------------------------------CAGCGACGA---CATCCT----------------------------------------------CGTCACC-CCATGAGTA-----------------------ATGTCA-----A-------------------------------------------
droYak3 3L:9797797-9798037 + C-------ATGGTCGCTCAGTGGAAAATCATCAACGAGAACTACAAAAATCTGGAGGGTAAACACACACA---------------------------------------------------------ATTTTCACACCATC--CAT----------------------------------------------------------------------------------------------------------------------------------ATGTATGCAT-------------------------------------------------------------------------------------------------------------GT--ATATAACCATATATCTGCTCGATTCAC--------------------TACGA------TTTTGAGCAAAC-AATGTTGCTCATTTCCGATGCAACAGCAGCAGCAGCAGCAGCATTAGCA------GCAACA------T------------------------------------------------GTTGCACGTT-------------------------------CAGCGACGA---CATCCT----------------------------------------------CATCACCCCCATGAGTA-----------------------ATGTCA-----A-------------------------------------------
droEre2 scaffold_4784:9811963-9812186 + AT--AACCATGGTCGCACAGTGGAAAATCATCAACGAGAACTACAAAAATCTGGAGGGTAAACAA-CACACA-----------------------------------------------------TAATTTTCACACCATC--CAC----------------------------------------------------------------------------------------------------------------------------------ATG--CACAT-----G-------------------------------------------------------------------------ACCGA-------------------------GT--ATATAACATTATATCGGCCCGATCCCA--------------------TACGA------TTTTGAGCAAAC-AATGTTGCGGAT-------GCA------------GC---------AGCA------GCAACA------T------------------------------------------------GTTGCATCCA-------------------------------CAGCGACGA---CATCCT----------------------------------------------CATCACC-CCATGAGTA-----------------------ATGTCA-----A-------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
A-------ATGGGCGCACAGTGGAGACTGATAAACCAAAACTACAAGAATATGGAGGGTAAATTT-----------------------------------------------TGTTCAAT-------ATTGATAAG--------------AAT---TTT--C------------A--TTAA-A----CTTGACTGACAACG------GGCGTTGGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGTTGCTGCC-------GCA------------GCAGCAGCAGCAGCA------GCAACA------G--------------------AC------GTCAGCAACAGCGGCAACATGTTGCACGTAGCT---------------------------------GT------------------------------------------CAATGCTGTCATCATC------------AGCATTG----TTGT-------TGCTGTTGTTG-----CTGTTGTTGCTGTTGCTGCGGT-----------------TGCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------GCAACA------G--------------------AC------GTCAGCAACAG.................................................................................................................................................................................................................2118.008014000000000000000000000000000000100000100000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA------GCAACA------G--------------------AC------GTC.........................................................................................................................................................................................................................2215.005002000000000000000000000000000000000000000000000000000000000030
...................GTGGAGACTGATAAACCAAAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.003012000000000000000000000000000000000000000000000000000000000000
........ATGGGCGCACAGTGGAGACTGATAAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002020000000000000000000000000000000000000000000000000000000000000
.............CGCACAGTGGAGACTGATAAACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002110000000000000000000000000000000000000000000000000000000000000
........ATGGGCGCACAGTGGAGACTGATAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002100000000000000000000000000000000000000000000000000000000000010
...................GTGGAGACTGATAAACCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000000000100000000000000000000000000000000000000100
........ATGGGCGCACAGTGGAGACTGATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002011000000000000000000000000000000000000000000000000000000000000
........ATGGGCGCACAGTGGAGACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000001000000000000000000000000000000000000000000010
...............................AAACCAAAACTACAAGAATATGGAGGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000001000000000000000000000000000000000000000000000
..............GCACAGTGGAGACTGATAAACCAAAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000000000000000000000000000000000000000000000000000000000000
..............GCACAGTGGAGACTGATAAACCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
.......................................ACTACAAGAATATGGAGGGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.........TGGGCGCACAGTGGAGACTGATAAACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------GCAACA------G--------------------AC------GTCAGCAACAGC................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
..............GCACAGTGGAGACTGATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
.................CAGTGGAGACTGATAAACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000000000000000000000000000000000000000000000000000000000000
.................CAGTGGAGACTGATAAACCAAAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000000000000000000000000000000000000000000000000000000000000
A-------ATGGGCGCACAGTGGAGACTGATAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000000000000000000000000000000000000000000000000000000000000
..................AGTGGAGACTGATAAACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------GCAACA------G--------------------AC------GTCAGC......................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------GCAACA------G--------------------AC------GTCAGCAAC...................................................................................................................................................................................................................1911.001100000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCGGCAACATGTTG....................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
.....................................AAACTACAAGAATATGGAGGGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
........ATGGGCGCACAGTGGAGACTGATAAACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000010000000000000000000000000000000000000000000
........ATGGGCGCACAGTGGAGACTGATAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000000000000000000000000000000000000000000000000000000000000
........ATGGGCGCACAGTGGAGACTGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
......................................AACTACAAGAATATGGAGGGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA------GCAACA------G--------------------AC------GTC.........................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGTTGCTGCGGT-----------------TGC..1930.331000000000000000000000000000000000000000000000000000000000000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTG----TTGT-------TGCTGTTGT...................................................19120.081000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA------GCAACA------G--------------------AC------G...........................................................................................................................................................................................................................19120.081000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------GCAGCAGCAGCAGCA------GCAA.................................................................................................................................................................................................................................................................21200.051000000000000000000000000100000000000000000000000000000000000000
droMoj3
G-------ATGGGCGCACAGTGGAGACTGATTAACCAGAACTATAAGAATATGGAGGGTAAACATATT-G--------------------------------------------------------------CATACTCATGATTCAACT--T---ATT--C------------AACTTAA-T----TTTCATTGAT--TT--------------------------------------------------------------------ATTCGGCGA--------GCAATTGTTGCTGC---------------------------------------------------TGCTGTTG--------TGGCAAGGC---------------------AGGC--------------------------------------------------------------GCTG----ATGTTGCTGCT-------GCA------------CC---------ATCAGACACAAC---------------------------------------AAC-----------------------------------------AGCAACAG---------CAATAACTAGATTATCAT----------------------------------------------C---A---------GCATA--------------GCCC------TTGTAGCT-----GTTGCTG---CTGTAATTGC-------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................GTGGAGACTGATTAACCAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000002
..................AGTGGAGACTGATTAACCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.................................ACCAGAACTATAAGAATATGGAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...................................CAGAACTATAAGAATATGGAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.....................GGAGACTGATTAACCAGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
....................................AGAACTATAAGAATATGGAGGGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
...................GTGGAGACTGATTAACCAGAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..........GGGCGCACAGTGGAGACTGATTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.........TGGGCGCACAGTGGAGACTGATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
............................GATTAACCAGAACTATAAGAATAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..........................CTGATTAACCAGAACTATAAGAATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.........TGGGCGCACAGTGGAGACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...................GTGGAGACTGATTAACCAGAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
........ATGGGCGCACAGTGGAGACTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACACAAC---------------------------------------AAC-----------------------------------------AGCAACAG---------T..............................................................................................................................................................2230.331100000
droGri2
A--------------------------------------GCTACAAGACTCTGCTGCACAAAAATTG---------------------------------------------TGGCCAAA-------ATGTGTAGGCA------------ATT---TGT--C------------A--ATATGTTATGA--------CAACGACAACTGGCAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGACAACAGCAGCAGCA-------GCA------------GT------------A------GCAACA------A------------------------------------------------CAT-CGGGCA-------------------------------CAGCAGCAA---CATTATTGACATTAGGGCACCTGTTTGTTTGCCAACTTA-----------------AAA-CTATGATTA-------CCGT-TGTTGTTG------TTGTTGTT-----GTTGCTG---TTGCTGTTGC-------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAGCA-------GCA------------GT------------A------.....................................................................................................................................................................................................................................................................21200.05101
droWil2
TT--AAACTTGGCCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA------AACGTCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTTGCAGCA-------GCA------------GCAGCAGCCGCAGCA------GCAAAACATCGTG--------------------AA------GCCAGCAACAAAAAC----------ACACAAT-----------------------------------T------------------------------------------CAATTTTATT-TCATT------------TACTTTGATGTCGGTGTGTTGTTG------TAGTTGTT-----GTTGCTG---CTGCGGTTGC-------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------TAGTTGTT-----GTTGCTG---C............................18200.05100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------GCAGCAGCCGCAGCA------GCA..................................................................................................................................................................................................................................................................20200.05100010
dp5
G-------ATGGGTGCCCAGTGGAAGATCATTAACCAAAACTACAAGAATCTGGAGGGTAAACACACATACACACACACATACACACACACACTCGTTATCTCCCTCTCTCTCTAT----AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAGA----------------------------------------------------------------------------------------TAAGT-CATGTGGCTGGT-------GTG------------CC----------TTG------GCAACA------T------------------------------------------------GTTGCATGTGGCT---------------------------------GAGG---CAACAT----------------------------------------------CATCACC-TTATGAGTA-----------------------ATGTCA-----CATTCCTTGCTTTCGACTCGTT-----------------T----SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
G-------ATGGGTGCCCAGTGGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
............GTGCCCAGTGGAAGATCATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010000
...............CCCAGTGGAAGATCATTAACCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000001000
.........................GATCATTAACCAAAACTACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........GGGTGCCCAGTGGAAGATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.............TGCCCAGTGGAAGATCATTAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
........................................CTACAAGAATCTGGAGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000000
.......................................ACTACAAGAATCTGGAGGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000001000
...........................................................................ACACATACACACACACACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
droPer2
G-------ATGGGTGCCCAGTGGAAGATCATTAACCAAAACTACAAGAATCTGGAGGGTAAACACACACACACA------------CACACACTCGCTATCTCCCTCTCTCTCTAT----AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAGA----------------------------------------------------------------------------------------TAAGT-CATGTGGCTGGT-------GTG------------CC----------TTG------GCAACA------T------------------------------------------------GTTGCATGTGGCT---------------------------------GGGG---CAACAT----------------------------------------------CATCACC-TTATGAGTA-----------------------ATGTCA-----CATTCCTTGCTTTCGACTCGTT-----------------T----SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............GCCCAGTGGAAGATCATTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
..........GGGTGCCCAGTGGAAGATCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droAna3
C-------A---------------ATATCAGTAACAATTCCTATAAA--GCTGG----------------------------------------------------------------------------------------------------------------------------------------------CTTTG------GGCGAGCGCAGTCAGCGACAGCATCA--TAAAAAGTTGC-----------------------------------------------------------------AGCTACA-------------------------------------------------------------------------------------------------------CT--------------------CGAAACGG------CAATTAGTGGAA-CATGTTGCTAAT-------GCT------------GC------------C------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------A-------TTGT-------CGCAGTGGCTGTTGCT-----GTTGCTG---------TTGCTGTTGGCGATGTGTCGCAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
T-------TCGATGTTGCA-------------A-----------------------------------------------------------------------------------------------------CT--------------AGT---TTC--C------------AAATTAT-C----TTTGGTTGTA--TT--------------------------------------------------------------------GCTATTGGT--------GTTACTGTTGCTGTCGCCAAATGCCAGCAACATGCCAGCCTGAGACTTGAGCGACATTTCAGCATTGCTGTTGCTTATACTTGGTAGTGT-----------------------------------------------------------------------------------------TGGT-GTTGTTGTTGGT-------GTT------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG-----CAGCTGTTTCTGATGTTGCTGT-----------------TGCAGSizeHit CountTotal NormTotal
No Reads
droKik1
C-------ATGGTCGCACAGTGGAAGATCATCAACGAGAACTACAAGAATCTGGAGGGTAAAGAC-------------------------------------------------------------------CACACTAAAAGCGTATCC--CATTT--A---------------AC---------------------------------------------------------------------------------------------------CA--------CTAGCTGTTG-------------------------------------------------------------------------------TTGGTGTTGTTGTTGGTGATGTTGGT--------------------------------------------------------------GTTGGT-GATGTTGCCAAT-------GCA------------GC------------GGACGAGGCAACA------TGTTGCCAA----------------------------------------------AGTG------TGCTGATTG------G---------GAGCAACCAACCCATCGT----------------------------------------------CAT------CATGAGTA-----------------------ATGTCA-----A-------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AT--AACCATGGTTGCTCAGTGGAAGATCATCAACGAGAACTACAAAAATCTGGAGGGTAAACACG-------------------------------------------------------------ATTT--ATTCTAT---------------TT--ACTATATACTTTTTG------------------------------------------------------------------------------------------------------------CCAT-----T-------------------------------------------------------------------------GCTGAT-------------------------------------------------------------------------------------------ATCGCAG-AATGTTGCTGGT-------GCA------------GC------------G------GCAACA------T------------------------------------------------GTTGCACGTA-------------------------------CGGCGACAA---CATCGTCGC-------------------------------------------CATCACC-CAATGAGTA-----------------------ATGTCA-----A-------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
C-------ATGGTCGCTCAGTGGAATATCATCAACGCAAACTACAAAAATCTGGAGGGTAAACACA-------------------------------------------------------------ATTTTCACACTT-----------------GACAGCATAC--CCTTAT--------CCATAT------------C--------------------------------------------------------------------CATATCCATG--TCCAT-------------------------------------------------------------------------------------------------------------ATCCATCTTGCAATATATCA---AAATTGAA--------------------TAAGA------TT-CGAG-GCAC-TATGTTGCTGGT-------GCA------------GC------------A------GCAACA------TGTTGCTGCGGTGCACGTAGAACGTCGACGAC-----------------------------------------GACGACGA---------CGACGACGA---CATCCT----------------------------------------------CATCACC-CCATGAGTA-----------------------ATGTCA-----A-------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
A----ACCATGGTCGCTCAGTGGAAGATCATCAACGCAAACTACAAAAATCTGGAGGGTAAACACAA------------------------------------------------------------ATTTTCACACTATATCCAT----------------------------------------------------------------------------------------------------------------------------------AT----CCAT-----A-------------------------------------------------------------------------TCCAATATAAA-----------------------------------------------------------------------------------------GTGT-AATGTTGCTGGT-------GCA------------GC------------G------GCAACA------TGTTGCTGCGGTGCACTT-------------------------------------AGAA-------------------------------CGACGACGA---CATCCT----------------------------------------------CATCACC-CCATGAGTA-----------------------ATGTCA-----A-------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AT--AACCATGGTCGCCCAGTGGAAAATCATCAACGAGAACTACAAAAATCTGGAGGGTAAACACACA-----------------------------------------------------------ATTTCCATACCAT-----------------ATATCACAG---------------------------------------------------------------------------------------------------------------------------GCTGTTC------------------------CAAATC-GC------------------------------------TTCA-------ATGCGATG----------------------------------CGATCGGATACGATGCGATGGGATGCGATG------CCATTTTGAGCGCAC-CATGTTGCTGGTT------GCA------------GC------------G------GCAACA------T------------------------------------------------GTTGCACGCAGAAGCGCA-TCATCAGCAGCATCACCAGCATCATCCCCAT---GATCCG----------------------------------------------CATCACC-CCATGAGTA-----------------------ATGTCA-----A-------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ATATAACCATGGTCGCTCAGTGGAAAATCATCAACGAGAACTACAAAAATCTGGAGGGTAAACACA-------------------------------------------------------------ATTTTCACACTAT-----------------ATATCACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA----------------------------------------ATATTGC--CGATCCCATGCGAGCCGATTCATTCCGAAC------CCATTTTGACCGCAC-AATGTTGCTGGT-------GCA------------GC------------G------GCAACA------TGTTGCCGCGT----------------------------------------TGCACGTA-------------------------------CATCCTCAT---CATCCC----------------------------------------------CATCACC-CCATGAGTA-----------------------ATGTCA-----A-------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
C-------ATGGTGGCTCAGTGGAAGATCATCAATGCGAACTACAAAAATCTGGAGGGTAAACACACACTCACA------------C------------------------TCTAT----ATATAATATTTTCACGCTC-----------------TATATAAT------------------CTATAA------------T--------------------------------------------------------------------CATA----------------------------------------------------------------------------------------------------------------------------------------GTATGGC--CAA------------------AAGTCAACC------CCTTTTTAATAGAAC-AATGTTGCTAAT-------GCA------------GC------------G------GCAACA------TGTTGCCGCGT----------------------------------------TGCACGTA-------------------------------CCACGACGA---CATCCT----------------------------------------------CATCACC-CCATGAGTA-----------------------ATGTCA-----A-------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
A-------ATTTTCT-------------------------------------GCAAC----------------------------------------------------------------------ATTTACGCG--------------CTT---TTT--C------------G--CTCATTTATGG----CCGGCC-----AACATGCAACA-AGACCAACTGCAGCAACAGTTGCAACTTTGCAGCAGAACCAGCAACATCAGCAACTGCTGCATG--TGCAT-------------------------------------------------------------------------------------------------------------GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCT---------------------------------GGTG---CAACAT----------------------------------------------T---------------G-------TTGT-------TGGTTCTGCTG-----CTGTTGCTGCTGTTGCTGCTGT-----------------C----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTG-----CTGTTGCTGCTGTT..............................19200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-----CTGTTGCTGCTGTTGCTG..........................20200.1020000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTGTTGCTGCTGT-----------------C----18160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-----CTGTTGCTGCTGTTGC............................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
C-------ATGGTCGCTCAGTGGAAAATCATCAACGAGAACTACAAAAATCTGGAGGGTAAACACACACACA-----------------------------------------------------TCATTTTCACACCACCCCCAT----------------------------------------------------------------------------------------------------------------------------------ATG--TGCAT-------------------------------------------------------------------------------------------------------------GT--ATATAGCAATATATCGCCCCGATCCCC----------------CCGAAACGA------TTTCGAGCAAACAAATGTTGCCAAT-------GCA------------GC------------A------GCAACA------T------------------------------------------------GTTGCAAGTA-------------------------------CAGCGACGA---CATCCT----------------------------------------------CGTCACC-CCATGAGTA-----------------------ATGTCA-----A-------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........ATGGTCGCTCAGTGGAAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00202000000000000000
........ATGGTCGCTCAGTGGAAAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.....................................GAACTACAAAAATCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
...........GTCGCTCAGTGGAAAATCATCAACGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
droSec2
AT--AACCATGGTCGCTCAGTGGAAAATCATCAACGAGAACTACAAAAATCTGGAGGGTAAACACACACACA-----------------------------------------------------TCATTTTCACACCAACCCCAT----------------------------------------------------------------------------------------------------------------------------------ATG--TGCAT-------------------------------------------------------------------------------------------------------------GT--ATATAGACATATATCGCCCCGATCCCC-----------------CAAAACGATTATTATTTCGAGCAAACAAATGTTGCCAAT-------GCA------------AC------------A------GCAACA------T------------------------------------------------GTTGCAAGTA-------------------------------CAGCGACGA---CATCCT----------------------------------------------CGTCACC-CCATGAGTA-----------------------ATGTCA-----A-------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........TGGTCGCTCAGTGGAAAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020200
......CCATGGTCGCTCAGTGGAAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
........ATGGTCGCTCAGTGGAAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.............CGCTCAGTGGAAAATCATCAACGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
.........TGGTCGCTCAGTGGAAAATCATCAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
....AACCATGGTCGCTCAGTGGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
..........GGTCGCTCAGTGGAAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
........ATGGTCGCTCAGTGGAAAATCATCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
droYak3
C-------ATGGTCGCTCAGTGGAAAATCATCAACGAGAACTACAAAAATCTGGAGGGTAAACACACACA---------------------------------------------------------ATTTTCACACCATC--CAT----------------------------------------------------------------------------------------------------------------------------------ATGTATGCAT-------------------------------------------------------------------------------------------------------------GT--ATATAACCATATATCTGCTCGATTCAC--------------------TACGA------TTTTGAGCAAAC-AATGTTGCTCATTTCCGATGCAACAGCAGCAGCAGCAGCAGCATTAGCA------GCAACA------T------------------------------------------------GTTGCACGTT-------------------------------CAGCGACGA---CATCCT----------------------------------------------CATCACCCCCATGAGTA-----------------------ATGTCA-----A-------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........TGGTCGCTCAGTGGAAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.00410000030000
.........TGGTCGCTCAGTGGAAAATCATCAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00201000010000
.........TGGTCGCTCAGTGGAAAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000020000
C-------ATGGTCGCTCAGTGGAAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
C-------ATGGTCGCTCAGTGGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
....................................AGAACTACAAAAATCTGGAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.........TGGTCGCTCAGTGGAAAATCATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.........TGGTCGCTCAGTGGAAAATCATCAACGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
..........GGTCGCTCAGTGGAAAATCATCAACGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
.....................GGAAAATCATCAACGAGAACTACAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
........ATGGTCGCTCAGTGGAAAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACAGCAGCAGCAGCAG......................................................................................................................................................................................................................................................................................20200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCA.................................................................................................................................................................................................................................................................................19200.05100010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCAGCAG......................................................................................................................................................................................................................................................................................19200.05101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGCAGCAGCA.................................................................................................................................................................................................................................................................................23200.05101000000000
droEre2
AT--AACCATGGTCGCACAGTGGAAAATCATCAACGAGAACTACAAAAATCTGGAGGGTAAACAA-CACACA-----------------------------------------------------TAATTTTCACACCATC--CAC----------------------------------------------------------------------------------------------------------------------------------ATG--CACAT-----G-------------------------------------------------------------------------ACCGA-------------------------GT--ATATAACATTATATCGGCCCGATCCCA--------------------TACGA------TTTTGAGCAAAC-AATGTTGCGGAT-------GCA------------GC---------AGCA------GCAACA------T------------------------------------------------GTTGCATCCA-------------------------------CAGCGACGA---CATCCT----------------------------------------------CATCACC-CCATGAGTA-----------------------ATGTCA-----A-------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........GGTCGCACAGTGGAAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000020
......................................AACTACAAAAATCTGGAGGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.....ACCATGGTCGCACAGTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCGGAT-------GCA------------GC---------AGCA------GCAA.................................................................................................................................................................................................................................................................2211.0011000000
.......................................ACTACAAAAATCTGGAGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.....................................GAACTACAAAAATCTGGAGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
.................CAGTGGAAAATCATCAACGAGAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010

Generated: 05/19/2015 at 09:19 PM