ID:

dvi_19024

 Coordinate:

scaffold_13049:8630065-8630215 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.6 -7.5 -7.3 -7.2

Flybase annnotation

CDS [Dvir\GJ12133-cds]; exon [dvir_GLEANR_12123:4]; intron [Dvir\GJ12133-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-
(CTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AATTGTCTCTCTTATCTCTTTACTCCCACATATCTGTTCGTATCTGTATGCGTATCTGTTACTGTATCTGTTTAACTGTTGCACTCGCACCCACCAACCACCAACACATCCATAACCTGCCTCTATTGGCACCTGAATCTGAAATTCCATGACTCGCATGTCTTGCACCATCAACACAACCACAACGACAATCAACAGCAGCAACCACAGCAACAATATGGTGCGCCGGCCTACGACAACTATCAGCAGCA
****************************************************************************************************************...............((.((.(((.((((......)).)).)))...))))**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060667
160_females_carcasses_total
 M028
head
 SRR060668
160x9_males_carcasses_total
 M027
male body		 SRR060669
160x9_females_carcasses_total
 SRR1106729
mixed whole adult body
 SRR060672
9x160_females_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060678
9x140_testes_total
 V047
embryo
 SRR060664
9_males_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060689
160x9_testes_total
................................................................................................................TAACCTGCCTCTATTGGCACC...................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................AACCACCAACACATCCATAACC...................................................................................................................................... 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TATGGTGCGCCGGCCTACGACA............. 22 0 1 3.00 3 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TTCCATGACTCGCATGTCT........................................................................................ 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATGGTGCGCCGGCCTACGACAACT.......... 24 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TTAACTGTTGCACTCGCACCC............................................................................................................................................................... 21 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ACCACAACGACAATCAACAGCAGCA................................................ 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ATCAACAGCAGCAACCACAGCAACA.................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................GTTGCACTCGCACCCACCAACC........................................................................................................................................................ 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................ATGACTCGCATGTCTTGCACC.................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATATGGTGCGCCGGCCTACGACAACT.......... 26 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................ACAACGACAATCAACAGCAGCAACC............................................. 25 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................ACAACCACAACGACAATCAACA...................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ACAGCAACAATATGGTGCGC......................... 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................ACGACAATCAACAGCAGCA................................................ 19 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTATCTGTTTAACTGTTGCACTCGCACC................................................................................................................................................................ 28 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATATGGTGCGCCGGCCTAC................. 19 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................TGTTTAACTGTTGCACTCGCACCCACC............................................................................................................................................................ 27 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................CACATATCTGTTCGTATCT.............................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATATGGTGCGCCGGCCTACG................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATGGTGCGCCGGCCT................... 15 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................TGTATGCGTATCTGTTCCTGTATC....................................................................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................ACAATCAACAGCAGCAACCACAGCAACA.................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................ACTGTTGCACTCGCACCCACCA........................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CAACGACAATCAACAGCAGCAACCA............................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CTCGCACCCACCAACCACCAACACATCC............................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CAACGACAATCAACAGCAGCAACC............................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................GTTTAACTGTTGCACTCGCACC................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................ATTGGCACCTGAATCTGAAA........................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TGCGTATCTGTTACTGTATCTGTTTAAC............................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TAACCTGCCTCTATTGGCACCTGAATC................................................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TCTGTATGCGTATCTGTTACTGTATCT...................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ATCAACAGCAGCAACCACAGCAAC..................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................ATGACTCGCATGACTTGCACCAT................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AACAGCAGCAACCACAGCAACAAT.................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................TGTATGCGTATCTGTTACTGTATC....................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CACCAACCACCAACACATCCATAACCT..................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CCTGCCTCTATTGGCACCTG.................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................ACAACGACAATCAACAGCAGCA................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................CAACCACAACGACAATCAAC....................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................CACATATCTGTTCGTATCTGTA........................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................ACTGTTGCACTCGCACCCACCAACAACC..................................................................................................................................................... 28 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................TAACTGTTGCACTCGCAC................................................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................GTTCGTATCTGTATGCGTATCT.................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....GTCTCTCTTATCTCTTTACTCCC................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................ACGACAATCAACAGCAGCAACCAC........................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CCTGAATCTGAAATTCCATGACTCGCATGTCTTGCACC.................................................................................. 38 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................ACCAACCACCAACACATCCATAACCT..................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CATCCATAACCTGCCTCTATTGGCACC...................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CATCCATAACCTGCCTCTATTG........................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AATATGGTGCGCCGGCCTACGACA............. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................CACCAACACATCCATAACCT..................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................CAACCACAACGACAATCAACAGCAGC................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ATCAACAGCAGCAACCAC........................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................CTCGCACCCACCAACCACCA.................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AACAGCAGCAACCACAGCA....................................... 19 0 3 1.00 3 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CGCATGTCTTGCACCATCAACACAACC...................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TCGCATGTCTTGCACCATCA.............................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CGCATGTCTTGCACCATCAACACAACCA..................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TGCCTCTATTGGCACCTGAATCT............................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AATCAACAGCAGCAACCACAG......................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AACGACAATCAACAGCAGCAACCA............................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TAACCTGCCTCTATTGGCACCTG.................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................ATCCATAACCTGCCTCTATTGGCACC...................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................GTATGCGTATCTGTTACTTTATC....................................................................................................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AATATGGTGCGCCGGCCTAC................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ATCAACAGCAGCAACCACAGCA....................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................ACCAACACATCCATAACCTG.................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................CAACCACCAACACATCCATAACC...................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................ACCAACACATCCATAACCTGCCTCTA.............................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................CACCTGAATCTGAAATTCCATGACTCGC.............................................................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TGAATCTGAAATTCCATGAC.................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ACCTGCCTCTATTGGCACCT..................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATGGTGCGCCGGCCTACGACAAC........... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGTTTAACTGTTGCACTCGCACCC............................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TGTCTTGCACCATCAACACAACC...................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.ATTGTCTCTCTTATCTCTTTA..................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTATCTGTTTAACTGTTGCACTCG.................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CAACGACAATCAACAGCAGC................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TCTGTTCGTATGTGTATGCGTATC................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................CTGTTGCACTCGCACCCACC............................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AACCACAACGACAATCAACAGCA................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGGTGCGCCGGCCTACGACAAC........... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CCTGAATCTGAAATTCCATGAC.................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................GTTTAACTGTTGCACTCG.................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................ACTCCCACATATCTGTTCGTATCTGTAT.......................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................ATAACCTGCCTCTATTGGCACC...................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TCAACACAACCACAACGACA............................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TGCACCATCAACACAACCACAACG................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................AACCACCAACACATCCATAACCTGCCT................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................ACAATCAACAGCAGCAACCAC........................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATATGGTGCGCCGGCCTACGACA............. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............TCTCTTTACTCCCACATATCT........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CATTGGCACCTGAATCTGAAAT.......................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................AACCTGCCTCTATTGGCACC...................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................AACTGTTGCACTCGCACCCACC............................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................ATGACTCGCATGTCTTGCACCATCA.............................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................CTGTATGCGTATCTGTTACT............................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................ACGACAATCAACAGCAGCAAC.............................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........CTTATCTCTTTACTCCCACATA........................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ACCACAACGACAATCAACAGCAGC................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................CAACCACCAACACATCCATAACCT..................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TGCACCATCAACACAACCACA................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TCCATGACTCGCATGTCTTGCACC.................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................ACAGCAACAATATGGTGCGCCGGCCTA.................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ACAATATGGTGCGCCGGCCTAC................. 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CAGCAACAATATGGTGCGCC........................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ACCAACCACCAACACATCCATAACC...................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................ACAACGACAATCAACAGCAGC................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CTGTTCGTATCTGTATGCGTATCTGTTACT............................................................................................................................................................................................ 30 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................ACCAACCACCAACACATCCATAAC....................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GCCTCTATTGGCACCTGAATCTGAAA........................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CACAGCAACAATATGGTGCGCC........................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ACCAACCACCAACACATCCA........................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TGACTCGCATGTCTTGCACCAT................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CTGTTTAACTGTTGCACTCGCACCCACC............................................................................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CAGCAACAATATGGTGCGCCGGCC.................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ACAGCAACAATATGGTGCGCCGGCC.................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................ACACAACCACAACGACAATCA......................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CTGTTTAACTGTTGCACTCG.................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ACCTGCCTCTATTGGCACCTG.................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AATATGGTGCGCCGGCCT................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................CAACCACAACGACAATCAACA...................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TGTCTCTCTTATCTCTTTACTCCC................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TGCCTCTATTGGCACCTGAATC................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CTGAAATTCCATGACTCGCATGTCT........................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................AACTGTTGCACTCGCACCCAC............................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ATTCCATGACTCGCATGTCT........................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TTACTCCCACATATCTGTTCGTATCT.............................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................TGCCTCTATTGGCACCTGAATCTG.............................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTATCTGTTTAACTGTTGCACTCGC................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................ATAACCTGCCTCTATTGGCACCTGAAT................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AACAATATGGTGCGCCGGCCT................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CAACGACAGTCAACAGCAGCA................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................TGTTGCACTCGCACCCACCAACC........................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CAACCACAGCAACAATATGGT............................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................TAACTGTTGCACTCGCACC................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................ACTGTTGCACTCGCACCCACCAACCACC..................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................CCAAAAAATCCGTAACCTGCCT................................................................................................................................. 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................TATGGTGCGCCGGCCTACGACAACT.......... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................ACACAACCACAACGACAATC.......................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ACAGCAGCAACCACAGCAACAATATGG.............................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GCCTCTATTGGCACCTGAATC................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ACAACAACGACAATCAACAGCAGCA................................................ 25 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................ACGACAATCAAGAGCAGCA................................................ 19 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AACAGCAGCAACCACAGCAAC..................................... 21 0 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ACAGCAGCAACCACAGCA....................................... 18 0 6 0.33 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................CCAACACATCCAGAAACTG.................................................................................................................................... 19 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ACAGCAGCAACCACAGCAAC..................................... 20 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................ACTGTATCTGTTTGGCTGTTG.......................................................................................................................................................................... 21 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ACAGCAGCAACCACAGCAA...................................... 19 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................ACACGTGGATAACCTGCCTC................................................................................................................................ 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................CCATCGTCACAACCACAAAG................................................................ 20 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................CACAACCACAACCACAATC.......................................................... 19 1 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................CGAACCGACCAACCACCA.................................................................................................................................................... 18 2 19 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................TATGGGGTGACGGCCTAC................. 18 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................AACACAACCCCACCGACCA............................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TTAACAGAGAGAATAGAGAAATGAGGGTGTATAGACAAGCATAGACATACGCATAGACAATGACATAGACAAATTGACAACGTGAGCGTGGGTGGTTGGTGGTTGTGTAGGTATTGGACGGAGATAACCGTGGACTTAGACTTTAAGGTACTGAGCGTACAGAACGTGGTAGTTGTGTTGGTGTTGCTGTTAGTTGTCGTCGTTGGTGTCGTTGTTATACCACGCGGCCGGATGCTGTTGATAGTCGTCGT
****************************************************************************************...............((.((.(((.((((......)).)).)))...))))**************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060679
140x9_testes_total
 SRR060659
Argentina_testes_total
 M047
female body
 SRR060681
Argx9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060689
160x9_testes_total
 V053
head
 SRR060658
140_ovaries_total
 SRR060683
160_testes_total
 SRR060654
160x9_ovaries_total
 SRR060666
160_males_carcasses_total
 SRR060660
Argentina_ovaries_total
 SRR060662
9x160_0-2h_embryos_total
.............................................................................................................................................................................................TTAGTTGTCTTAGTTGGTGTCGTA...................................... 24 3 2 2.00 4 0 0 2 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................GCGTGGGTGGTTGGTGGTTGT................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTAGTTGTCTTAGTTGGTGTCG........................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TGTAGGTATTGGACTGAGATA............................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTAGTTGTCTTAGTTGGTGTC......................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TAGTTGTCTTAGTTGGTGTCGTA...................................... 23 3 4 0.75 3 2 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................TTAGTTGTCTTAGTTGGTGT.......................................... 20 2 3 0.67 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGGGTGGTTTGGGGTTGTGT............................................................................................................................................... 20 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TCGTTGGTGTCGTTGTTA.................................. 18 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................CTTAGTTGTCTTAGTTGGTGTCG........................................ 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ACCACGCGGCCGGATCTT............... 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................TTAGTTGTCTTAGTTGGTG........................................... 19 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GTGTTGCTTTTAGTTGTC..................................................... 18 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................ATGAGGGGGTAGAGACAAGT................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................AGTTGTCTTAGTTGGTGTCG........................................ 20 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGGTGTTGCTGCTAGTGGGC..................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................GGTGGTTGGTTGGTGTGTA.............................................................................................................................................. 19 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................AGTTGTCTTAGTTGGTGTCGTA...................................... 22 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................AACGCATGGACAATGACTTA........................................................................................................................................................................................ 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................TTGTCTTAGTTGGTGTCGT....................................... 19 2 20 0.10 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................GTTGTCGTCGTTGGTCTCG........................................ 19 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TTGGGTGGATGGTGGTTG.................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:8630015-8630265 - dvi_19024 AATTG-T------------------CT-CTCTTATCTCTTTA-CTCCCACATATC----------------------TGTTCGTATCTG-TATG------CGTATCTGTTACTGTATCTGTT----TAACTGTTGC-------------ACTCGCACCCACCAACCACCAA----------CA------CAT-C---------------------CATAACC--TGCCTCTATTGGCACCTGAATCTG----------------------AAATT-CCATGAC---TCGCATGT---CTTGCACCATCAA--C--------ACAA-------------------------------------CC--------------------------------------------ACA--ACGACAATCA-AC------AGCAGCAA---CCACAGCAACAATATGGTGCGCCGGC----CTACGACAACTATCAG--------CAGCA
droMoj3 scaffold_6680:6712325-6712550 + dmo_2389 AATTG-TCT----------------CT-CTTATCTCTCTTTA-CTCCGGTGTCTGT-------------------------TTACTCTG-TTTG------TTT--------GTGTAAATGTTTAA----CTGTTGC-------------ACTTGC--ACCCAAACCACCAA------------------CAA-CATC------------------CATAACCTCTGTCTCGATTG-----------------------------GCACCTGAAACACCATGAC---TCGCATGCA-----ACACCACTGAA-T--------ACCA-------------------------------------CC--------------------------------------------ACA-------------------GCAGCAACCA---CCACAGCAACAATATGGTGCACCGTC----CTACAACAACTACCAG--------CAGCA
droGri2 scaffold_15110:4365142-4365410 - AACTG-T------------------CT-TCTTTCTCTCTTTA-CTTGGACATCTGTGATTTCTGTTAACTGAAACTGTTACTGTTACTG-TTACTCAAACTGTAACTGTAACTGTCT--GTG--CTTATCTGT----T---------GCAC------CTGCACCCAAACCA----------AC------CAC-CAACCAACCAACAAA-TACATCCATAACC----------TTG-----------------------------GCACCTGAAAT-CCATGAC---TCGCATGT--TTTTGTACCACAAC--A--------ACTA-------------------------------------CA--------------------------------------------ACA-------------------ACAACAGCCG---CAGCAGCAGCAATATCGTGCACCATC----CAACGATAGCCATCAA--------CAGCA
droWil2 scf2_1100000004762:1070948-1071204 - dwi_1975 ATATA-TATATATAAATTTATTATTCC-TCGATCTAAATCTCTTTGCA----------------------------------CTATCCG-TGTG------TA----------T--GTGTGTGTGT----ATATTGTTT--------TGCAC------CTTCCTCTCCAAAA----------AA--------C-AACCAAACCATAAATCAACATCCATAAA------------------------------------T--TTCTGTGACCT------------------CATGCATGTTTGCACCAAAAGC-C--------ACCT-------------------------------------CAACAT------------CAA--CA-----ACAACAACA-ACCACCACA--ACAGCAG-----------------CCACCACAACAACAACAATATGGTGCACCATC----ATACAACAATTATCAA--------CAACA
dp5 XR_group6:9837363-9837622 - dps_3128 AT---------------------------ATGTCTATATCTATCTCGAACATAT---------------------------ATTCTCTC-TCTT------TCCACATCG-TCT------GTG--T----GTGTCGTTT---------ACAC------CTCCCAACCAACCA----------ACCA--ACCACACACCCATCTACAACA-TC-------------------------------------------CTTAACACCCGTGATCGAAAC-CCAAA----------T--------GCACCAACGAACC--------ACCA----------AATGCACTATTGAACCAATAGCAGCCACAATACGGTAGCCAGC---------------------------------------------------------AGCAG---CCACAGTCACAGTCTGTGGCACCTCAGTGGCAACAACAGCAGCCAGCTGCATCCCAGCA
droPer2 scaffold_61:116368-116645 - dpe_1947 ATG--GT------------------CTATATGTCTATCTCTATCTCGAACATAT---------------------------ATTCTCTC-TCTT------TCCACATCG-TCT------GTG--T----GTGTCGTTT---------ACAT------CTCCCAACCAACCA----------AC------CACACACCCATCTACAACA-TC-------------------------------------------CTTAACACCCGTGATCGAAAC-CCAAA----------T--------GCACCAACGAACC--------ACCA----------AATGCACCATTGAACCAATAGCAGCCACAATACGGTAGCCAGC---AG--CA---------------------GCA-------------------GCAGCAGCCACAGCCACAGCCACAGTCTGTGGCACCTCAGTGGCAACAACAGCAGCCAGCTGCATCCCAGCA
droAna3 scaffold_13337:3546427-3546674 - dan_2389 ATG--GT------------------CT-TCTGTCTATCTCTATTTCCAACATATA--------------------------TCTATCTC-TATG------TCTACATCA-AAT------GTGAAT----GTGTTGTTT--------CGCAC--CC---ACCCGACAAAT----TCGACAAAAACAAAAACAC-CATCCATCTACAA---TA------------------------------AAAT--AAAAACCCATT--ACCTGTGATCGCACA-CCATGACCGTAAACATGCATGTTGGCACCACCA-------------------------------------------------------------------------------------------------CCGAT--CCACCGACT----------------------AGCAGCAGCAATACGGTGCTCCATC----CTACGGTGGCTACCAG--------CAACA
droBip1 scf7180000396387:58281-58513 + ATG--GT------------------CT-TCTATCTATCTCTATTTCCAACATATA--------------------------TCTATATC-TATG------TCTACATCA-AAT------GTGAAT----GTGTTGTTT--------CGCAC--CC---ACCCGA----CAAAATCGACAAAAACA--AACAC-CATCCATCTACAA---TT------------------------------AAAT--AAAAACCCATTACACCTGTGATCGC----------------ACATGCATGTTGGCACCACCA-------------------------------------------------------------------------------------------------CCGAT--CCACCG-------------------AG---TAGCAGCAGCAATACGGTGCTCCATC----CTACGGTGGCTACCAA--------CAGCA
droKik1 scf7180000302621:180826-181043 - CTCTA-TCTCTCTGTCTTTC--------------TTCCTCTA-------TATAT------------------AACTCTCTTTCTCTCTC-TCTC------TCTATCTCTGACTATGTGTGTG----TATCTCT-CTTTCTCTCTCCCGTGT------CTC-----CCAC-A----------AT------TAT-TGTTTATATAAAAAA--A------------------------------AACA---------CATA--TTTTGCAATTG-----------------------------------CCTCA-G-----------------------------------ATCAACGGCAGCGGAGTTGCAGCTGC--ACAGCAG--CA---------------------ACA-------------------GT---CGCAA---GCGCAGC-------------------------------AACAGCAG--------CAGCA
droFic1 scf7180000453807:985087-985350 + AA---GT------------------CT-CTTGTCTATCTCTATTTTCAACATAT---------------------------TCTATCTG-TCTG------TCTACATCC-ACT------GTGAAT----GTGTTGTAC---------GCAC------CTCCCAACCAACCA----------AA------CAA-TATCCATCAATGAAT-TC------------------------------AAAT--CACGA-CCATA--ACCTGTGATCGAAAC-CCATGAC---AAACACGCATGCTGGCACCACCGAACC--------AC--------------------------------------------------------------------TCAACTACTGCACCACAAAA--CCACCGATTGAGTAAC------AGCAG---CAGCAGCAGCAGTACGGTGCTCCTTC----CTACGATGGCTACCAG--------CAGCA
droEle1 scf7180000490564:621497-621721 + ----------------------------------TATCTCTATCTCCAACATAT---------------------------TCTATCTG-TCTA------TCTACATCC-ACT------GTGAAT----GTGTTGTAT---------GCAC------CTCCCAACCAATAA----------AA------CAC-CACC--------------------------------------------ATAC---------CATA--ACTTGTGATCGAAAC-CCATGTC---AAACATGCATGTTGGCACCACCGAAAC--------ACCA-------------------------------------C---------------------------------CAATGCACCACTGCA--CCACCGGTCGAAT------------AG---CAGCAGCAGCAGTACGGTGCTCCGTC----TTACGATGGCCAGCAG--------CAGCA
droRho1 scf7180000776514:22075-22333 + G----GT------------------CT-TCTGTCTATCTCTATCTCCAACATAT---------------------------TCTATCTG-TCTG------TGTACATCC-ACT------GTGAAT----GTGTCGAAT---------GCAC------CTCCCAACCAATAA----------AA------CAC-CACCCATCTATGAAA-TC------------------------------AAAC---------CATA--ACCTGTGATCGAAAC-CCATGTC---GAACATGCATGTTGGCACCACCGAA-C--------ACCA-------------------------------------CC-----------------AA--------TGCACCAATGTACCACTGCA--CCACCGATTGAAT---------AGCAG---CAGCAGCAGCAGTACGGTGCTCCGTC----TTACGATGGCCAGCAG--------CAGCA
droBia1 scf7180000302428:7943917-7944137 - ----------------------------------TATCTCTATCTCCAACATAT---------------------------TCTATCTG-TCTG------TCTACATCC-AAT------GTGAAT----GTGTCGTAC---------GCAC------CTCCCAACCAACAA----------CA------CAC-CACCCATCTTCGAAA-TC------------------------------ACAC---------CATA--CCCTGTGGTCGAAAC-CCATGAC---AAACATGCATGCTGGCACCACCAAA-C--------ACCA-------------------------------------AC--------------------------------------------GACCATCACTG-------------------AG---CAGCAGCAGCAGTACGGTGCTCCTTC----CTACGACGGCTACCAG--------CAGCA
droTak1 scf7180000414372:10252-10496 - A-G--TT------------------CT-TCTGTCTATCTCTATCTCCAACATAT---------------------------TCTATCTG-TCTG------TCTACATCC-AAT------GTGAAT----GTGTCGTAT---------GCAC------CTCCCAACCAACAA----------AACA--AACAC-CACCCATCAATGAAA-TC------------------------------AAAC---------CATA--ACCTGTGATCGAAAC-CCATGAC---AAACATGCATGTTGGCACCACCAAA-A--------ACCA---------------------------------------------------------------------------------CTGCA--CCACCGGTTGAAC---------AGCAG---CAGCAGCAGCAGTACGGTGCTCCGTC----TTACGATGGCCACCAG--------CAGCA
droEug1 scf7180000409711:1681837-1682078 + G-----T------------------CT-ATTGTCTATCTCTATTTCCAACATAT---------------------------TCTCTCTG-TCTA------TCTACATCC-AAT------GTGAAT----GTGTCGTAT---------AAAC------CTTCCAACCAACAA----------AA------CAC-CATCCATCAATGAAA-TC------------------------------AAAC---------CATA--ACCTGTGATCGAAAC-CCATGAC---AAACATGCATGTTGGCACCACCGAA-C--------ACCA-------------------------------------CC-----------------------------------------AATGCA--CCACCGATTGAAT---------AGCAA---CAGCAGCAGCAGTACGGTGCTCCGTC----TTACGGTAGTCAACAG--------CAGCA
dm3 chr3L:9825084-9825336 + ATG--GT------------------CT-TTTGTCTATCTCTATCTCCAACATAT---------------------------TCTATCAATTCTA------TCTACATCC-AAT------GTGAAT----GTGTCGTAT---------GCAC------CTCCCAACCAACAA----------AA------CAC-CACCCATCTACGAAT-TA------------------------------AAAT---------CATA--ACCTGTGATCGAAAC-CCATGTC---GAACATGCATGTTGGCACCACCAAA-C--------ACCA-------------------------------------CCA----------------------------CACCACTGCACCACTGCA--CCATCGGTTGAATCT---------------CAGCAGCAGCAGTACGGTGCTCCGTC----TTACGATGGC---CAG--------CAGCC
droSim2 3l:9584831-9585079 + dsi_19426 -------------------------------------------------CATAT---------------------------TCTATCTATTCTA------TCTACATCC-AAT------GTGAAT----GTGTCGTAT---------GCAC------CTCCCAACCAACAA-----------A------CAC-CACCCATCTACGAAT-TT------------------------------AAAT---------CATA--ACCTGTGATCGAAAC-CCATGTC---GAACATGCATGTTGGCACCACCAAA-C--------ACCA-------------------------------------CTGCAC------------CAATGCACCAATGCACCAATGCACCACTGCA--CCACCGGTTGAATCTC------AGCAG---CAGCAGCAGCAGTACGGTGCTCCGTC----TTACGATGGCCAGCAG--------CAGCA
droSec2 scaffold_0:2057950-2058217 + G----GT------------------CT-TCTGTCTATCTCTATCTCCAACATAT---------------------------TCTATCTATTGTA------TCTACATCC-AAT------GTGAAT----GTGTCGTAT---------GCAC------CTCCCAACCAACAA----------AA------CAC-CACCCATCTACGAAT-TT------------------------------AAAT---------CATA--ACCTGTGACCGAAAC-CCATGTC---GAACATGCATGTTGGCACCACCAAA-C--------ACCA-------------------------------------CTGCAC------------CAA--------TGCACCAATGCACCACTGCA--CCACCGGTTGAATCTC------AGCAG---CAGCAGCAGCAGTACGGTGCTCCGTC----TTACGATGGCCAGCAG--------CAGCA
droYak3 3L:9800141-9800380 + ATG--GT------------------CT-CTTGTCTATCTCTATCTCCAACATAT---------------------------TCTATCTG-TCTG------TCCACATGC-AAT------GTGAAT----GTGTCGTAT---------GCAC------CTCCCAACCAACAA----------AA------CAC-CAC-------------TC------------------------------AAAT---------CATT--ACCTGTGATCGCAAC-CCATGTC---AAACATGCATCTTGGCACCACCCAA-CTTCAATGCACCACCACTGCACCAATGCACCA------------------CTGCAC------------CAC--------TGCACCAATGCAC-----------------------------------------------------CACTGCTCCACT----GCACCACTGC--TCCA--------CTGCA
droEre2 scaffold_4784:9814012-9814285 + der_776 ATG--GT------------------CT-TTTGTCTATCTCTATCTCCAACATAT---------------------------TCTATCTG-TCTG------TCCACATGC-AAT------GTGAAT----GTGTCGTAT---------GCAC------CTCCCAACCAACAA----------AA------CAC-CGCCCATCTACGAAA-CC------------------------------AAAT---------CATA--ACCTGTGATCGAAAC-CCATGTC---AAACATGCATGTTGG-GCCACCAAA-C--------ACCA-------------------------------------CTGCAC------------CAC--------TGCACCAATGCACCACTGCA--CCACCGATTGAATATCAGCAGCAGCAA---CAGCAGCAGCAGTACGGTGCTCCGTC----TTACGATGGCCAGCAG--------CAGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AATTG-T------------------CT-CTCTTATCTCTTTA-CTCCCACATATC----------------------TGTTCGTATCTG-TATG------CGTATCTGTTACTGTATCTGTT----TAACTGTTGC-------------ACTCGCACCCACCAACCACCAA----------CA------CAT-C---------------------CATAACC--TGCCTCTATTGGCACCTGAATCTG----------------------AAATT-CCATGAC---TCGCATGT---CTTGCACCATCAA--C--------ACAA-------------------------------------CC--------------------------------------------ACA--ACGACAATCA-AC------AGCAGCAA---CCACAGCAACAATATGGTGCGCCGGC----CTACGACAACTATCAG--------CAGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................TAACC--TGCCTCTATTGGCACC......................................................................................................................................................................................................................................................................2113.003003000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................AACCACCAA----------CA------CAT-C---------------------CATAACC--......................................................................................................................................................................................................................................................................................2213.003003000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGTGCGCCGGC----CTACGACA.....................2213.003011000000000000000010000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TT-CCATGAC---TCGCATGT---CT...........................................................................................................................................................................................................1912.002002000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGCGCCGGC----CTACGACAACT..................2412.002110000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................T----TAACTGTTGC-------------ACTCGCACCC.......................................................................................................................................................................................................................................................................................................................................................2112.002100000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................A-------------------------------------CC--------------------------------------------ACA--ACGACAATCA-AC------AGCAGCA...............................................................2512.002001000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA-AC------AGCAGCAA---CCACAGCAACA................................................2512.002002000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................GTTGC-------------ACTCGCACCCACCAACC................................................................................................................................................................................................................................................................................................................................................2212.002002000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................ATGAC---TCGCATGT---CTTGCACC.....................................................................................................................................................................................................2112.002002000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGTGCGCCGGC----CTACGACAACT..................2612.002010000000000000000100000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ACA--ACGACAATCA-AC------AGCAGCAA---CC.........................................................2512.002001000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................ACAA-------------------------------------CC--------------------------------------------ACA--ACGACAATCA-AC------A.....................................................................2212.002002000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAATATGGTGCGC.....................................2012.002001000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................ACGACAATCA-AC------AGCAGCA...............................................................1912.002000000000000000001100000000000000000000000000000000000000000000
.................................................................................................................GTATCTGTT----TAACTGTTGC-------------ACTCGCACC........................................................................................................................................................................................................................................................................................................................................................2812.002011000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGTGCGCCGGC----CTAC.........................1912.002000000000000000001010000000000000000000000000000000000000000000
......................................................................................................................TGTT----TAACTGTTGC-------------ACTCGCACCCACC....................................................................................................................................................................................................................................................................................................................................................2712.002010000000000000001000000000000000000000000000000000000000000000
...............................................CACATATC----------------------TGTTCGTATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGTGCGCCGGC----CTACG........................2011.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGCGCCGGC----CT...........................1511.001000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATCA-AC------AGCAGCAA---CCACAGCAACA................................................2811.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACTGTTGC-------------ACTCGCACCCACCA...................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CA--ACGACAATCA-AC------AGCAGCAA---CCA........................................................2511.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................CTCGCACCCACCAACCACCAA----------CA------CAT-C---------------------C..............................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CA--ACGACAATCA-AC------AGCAGCAA---CC.........................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GTT----TAACTGTTGC-------------ACTCGCACC........................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................ATTGGCACCTGAATCTG----------------------AAA.....................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................TG------CGTATCTGTTACTGTATCTGTT----TAAC....................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TAACC--TGCCTCTATTGGCACCTGAATC................................................................................................................................................................................................................................................................2711.001000000000000000000100000000000000000000000000000000000000000000
.....................................................................................TCTG-TATG------CGTATCTGTTACTGTATCT...............................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA-AC------AGCAGCAA---CCACAGCAAC.................................................2411.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................A-AC------AGCAGCAA---CCACAGCAACAAT..............................................2411.001000000000000000000000010000000000000000000000000000000000000000
.......................................................................................TG-TATG------CGTATCTGTTACTGTATC................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................CACCAACCACCAA----------CA------CAT-C---------------------CATAACC--T.....................................................................................................................................................................................................................................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................CC--TGCCTCTATTGGCACCTG....................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ACA--ACGACAATCA-AC------AGCAGCA...............................................................2211.001000000000000000000100000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................CAA-------------------------------------CC--------------------------------------------ACA--ACGACAATCA-AC------......................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...............................................CACATATC----------------------TGTTCGTATCTG-TA..........................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TAACTGTTGC-------------ACTCGCAC.........................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
..............................................................................GTTCGTATCTG-TATG------CGTATCT...........................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000100000000000000000000000000000000000000000
....G-T------------------CT-CTCTTATCTCTTTA-CTCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................ACGACAATCA-AC------AGCAGCAA---CCAC.......................................................2411.001000000000000000000100000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................CCTGAATCTG----------------------AAATT-CCATGAC---TCGCATGT---CTTGCACC.....................................................................................................................................................................................................3811.001000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................ACCAACCACCAA----------CA------CAT-C---------------------CATAACC--T.....................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................CAT-C---------------------CATAACC--TGCCTCTATTGGCACC......................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................CAT-C---------------------CATAACC--TGCCTCTATTG...........................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGGTGCGCCGGC----CTACGACA.....................2411.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................CACCAA----------CA------CAT-C---------------------CATAACC--T.....................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................CAA-------------------------------------CC--------------------------------------------ACA--ACGACAATCA-AC------AGCAGC................................................................2611.001000000000000000000010000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA-AC------AGCAGCAA---CCAC.......................................................1811.001000000000000000000010000000000000000000000000000000000000000000
......................................................................................................................................................CTCGCACCCACCAACCACCA............................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................A-AC------AGCAGCAA---CCACAGCA...................................................1931.003001000000000000001010000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CGCATGT---CTTGCACCATCAA--C--------ACAA-------------------------------------CC--------------------------------------------..............................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TCGCATGT---CTTGCACCATCA.................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CGCATGT---CTTGCACCATCAA--C--------ACAA-------------------------------------CC--------------------------------------------A.............................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................TGCCTCTATTGGCACCTGAATCT...............................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AATCA-AC------AGCAGCAA---CCACAG.....................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................A--ACGACAATCA-AC------AGCAGCAA---CCA........................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TAACC--TGCCTCTATTGGCACCTG....................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................AT-C---------------------CATAACC--TGCCTCTATTGGCACC......................................................................................................................................................................................................................................................................2611.001000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGGTGCGCCGGC----CTAC.........................2011.001000000000000000000010000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA-AC------AGCAGCAA---CCACAGCA...................................................2211.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................ACCAA----------CA------CAT-C---------------------CATAACC--TG....................................................................................................................................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................CAACCACCAA----------CA------CAT-C---------------------CATAACC--......................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................ACCAA----------CA------CAT-C---------------------CATAACC--TGCCTCTA..............................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................CACCTGAATCTG----------------------AAATT-CCATGAC---TCGC....................................................................................................................................................................................................................2811.001000000000000000000100000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TGAATCTG----------------------AAATT-CCATGAC---........................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................ACC--TGCCTCTATTGGCACCT.....................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGCGCCGGC----CTACGACAAC...................2311.001010000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TGTT----TAACTGTTGC-------------ACTCGCACCC.......................................................................................................................................................................................................................................................................................................................................................2411.001010000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TGT---CTTGCACCATCAA--C--------ACAA-------------------------------------CC--------------------------------------------..............................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.ATTG-T------------------CT-CTCTTATCTCTTTA-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................GTATCTGTT----TAACTGTTGC-------------ACTCG............................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CA--ACGACAATCA-AC------AGCAGC................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................CTGTTGC-------------ACTCGCACCCACC....................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................AA-------------------------------------CC--------------------------------------------ACA--ACGACAATCA-AC------AGCA..................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCGCCGGC----CTACGACAAC...................2211.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................CCTGAATCTG----------------------AAATT-CCATGAC---........................................................................................................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GTT----TAACTGTTGC-------------ACTCG............................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.........................................A-CTCCCACATATC----------------------TGTTCGTATCTG-TAT.........................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000100000000000000000000000000000000000000000000
........................................................................................................................................................................................................................ATAACC--TGCCTCTATTGGCACC......................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TCAA--C--------ACAA-------------------------------------CC--------------------------------------------ACA--ACGACA...................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TGCACCATCAA--C--------ACAA-------------------------------------CC--------------------------------------------ACA--ACG......................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................AACCACCAA----------CA------CAT-C---------------------CATAACC--TGCCT.................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATCA-AC------AGCAGCAA---CCAC.......................................................2111.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGTGCGCCGGC----CTACGACA.....................2311.001000000000000000000100000000000000000000000000000000000000000000
..................................TCTCTTTA-CTCCCACATATC----------------------T........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................AACC--TGCCTCTATTGGCACC......................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AACTGTTGC-------------ACTCGCACCCACC....................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................ATGAC---TCGCATGT---CTTGCACCATCA.................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................CTG-TATG------CGTATCTGTTACT.....................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................ACGACAATCA-AC------AGCAGCAA---C..........................................................2111.001000000000000000000010000000000000000000000000000000000000000000
..............................CTTATCTCTTTA-CTCCCACATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................A-------------------------------------CC--------------------------------------------ACA--ACGACAATCA-AC------AGCAGC................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................CAACCACCAA----------CA------CAT-C---------------------CATAACC--T.....................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TGCACCATCAA--C--------ACAA-------------------------------------CC--------------------------------------------ACA--.........................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................T-CCATGAC---TCGCATGT---CTTGCACC.....................................................................................................................................................................................................2411.001000000000000000010000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAATATGGTGCGCCGGC----CTA..........................2711.001010000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATATGGTGCGCCGGC----CTAC.........................2211.001000000000000000000010000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAATATGGTGCGCC....................................2011.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................ACCAACCACCAA----------CA------CAT-C---------------------CATAACC--......................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ACA--ACGACAATCA-AC------AGCAGC................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................C----------------------TGTTCGTATCTG-TATG------CGTATCTGTTACT.....................................................................................................................................................................................................................................................................................................................................................................................................3011.001000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................ACCAACCACCAA----------CA------CAT-C---------------------CATAAC.........................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................GCCTCTATTGGCACCTGAATCTG----------------------AAA.....................................................................................................................................................................................................................................2611.001100000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCAACAATATGGTGCGCC....................................2211.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................ACCAACCACCAA----------CA------CAT-C---------------------CA.............................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................TGAC---TCGCATGT---CTTGCACCAT...................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................CTGTT----TAACTGTTGC-------------ACTCGCACCCACC....................................................................................................................................................................................................................................................................................................................................................2811.001010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAATATGGTGCGCCGGC----C............................2411.001010000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAATATGGTGCGCCGGC----C............................2511.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................A--C--------ACAA-------------------------------------CC--------------------------------------------ACA--ACGACAATCA-..............................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................CTGTT----TAACTGTTGC-------------ACTCG............................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................ACC--TGCCTCTATTGGCACCTG....................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGGTGCGCCGGC----CT...........................1811.001000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................CAA-------------------------------------CC--------------------------------------------ACA--ACGACAATCA-AC------A.....................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...TG-T------------------CT-CTCTTATCTCTTTA-CTCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000100000000000000000000000000000000000000000000
................................................................................................................................................................................................................................TGCCTCTATTGGCACCTGAATC................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................CTG----------------------AAATT-CCATGAC---TCGCATGT---CT...........................................................................................................................................................................................................2511.001000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................AACTGTTGC-------------ACTCGCACCCAC.....................................................................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................ATT-CCATGAC---TCGCATGT---CT...........................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.......................................TTA-CTCCCACATATC----------------------TGTTCGTATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................TGCCTCTATTGGCACCTGAATCTG----------------------........................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................GTATCTGTT----TAACTGTTGC-------------ACTCGC...........................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................ATAACC--TGCCTCTATTGGCACCTGAAT.................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATATGGTGCGCCGGC----CT...........................2111.001100000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TGTTGC-------------ACTCGCACCCACCAACC................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---CCACAGCAACAATATGGT.........................................2111.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................TAACTGTTGC-------------ACTCGCACC........................................................................................................................................................................................................................................................................................................................................................1911.001100000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACTGTTGC-------------ACTCGCACCCACCAACCACC.............................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGTGCGCCGGC----CTACGACAACT..................2511.001100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................A--C--------ACAA-------------------------------------CC--------------------------------------------ACA--ACGACAATC................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AC------AGCAGCAA---CCACAGCAACAATATGG..........................................2711.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................GCCTCTATTGGCACCTGAATC................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................A-AC------AGCAGCAA---CCACAGCAAC.................................................2130.331000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AC------AGCAGCAA---CCACAGCA...................................................1860.332002000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AC------AGCAGCAA---CCACAGCAAC.................................................2040.251001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AC------AGCAGCAA---CCACAGCAA..................................................1940.251000000000000000001000000000000000000000000000000000000000000000
droMoj3
AATTG-TCT----------------CT-CTTATCTCTCTTTA-CTCCGGTGTCTGT-------------------------TTACTCTG-TTTG------TTT--------GTGTAAATGTTTAA----CTGTTGC-------------ACTTGC--ACCCAAACCACCAA------------------CAA-CATC------------------CATAACCTCTGTCTCGATTG-----------------------------GCACCTGAAACACCATGAC---TCGCATGCA-----ACACCACTGAA-T--------ACCA-------------------------------------CC--------------------------------------------ACA-------------------GCAGCAACCA---CCACAGCAACAATATGGTGCACCGTC----CTACAACAACTACCAG--------CAGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................ACACCATGAC---TCGCATGCA-----..........................................................................................................................................................................................................1912.002200000
.....................................CTTTA-CTCCGGTGTCTGT-------------------------TTACTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..................................................................................................................................................................................................................................................................................CACCATGAC---TCGCATGCA-----ACACCACTG.................................................................................................................................................................................................2711.001100000
................................................................................................................................................................................................................................................................................AACACCATGAC---TCGCATGCA-----ACACCAC...................................................................................................................................................................................................2711.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATATGGTGCACCGTC----CTACA........................2311.001100000
...................................................................................ACTCTG-TTTG------TTT--------GTGTAAA................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
....................................................................................CTCTG-TTTG------TTT--------GTGTAAATGTTTAA----CTG..................................................................................................................................................................................................................................................................................................................................................................................2911.001000001
.......................................................................................................................GTTTAA----CTGTTGC-------------ACTTGC--ACCCAAA..................................................................................................................................................................................................................................................................................................................................................2611.001100000
......................................................................................................................................................................................................................................................................................ATGAC---TCGCATGCA-----ACACCACT..................................................................................................................................................................................................2211.001001000
........................................................................................................................TTTAA----CTGTTGC-------------ACTTGC--ACCC.....................................................................................................................................................................................................................................................................................................................................................2211.001100000
.......................................................................................................................................................................................................................CATAACCTCTGTCTCGATTG-----------------------------GCACC.........................................................................................................................................................................................................................................2511.001100000
...........................................................................................................................AA----CTGTTGC-------------ACTTGC--ACCCA....................................................................................................................................................................................................................................................................................................................................................2011.001100000
....................................TCTTTA-CTCCGGTGTCTGT-------------------------TTACT................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.........................................A-CTCCGGTGTCTGT-------------------------TTACTCTG-TT..........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.................................................................................................................................................................................................................................................................................ACACCATGAC---TCGCATGCA-----ACACCACTGA................................................................................................................................................................................................2911.001100000
..........................................................................................................................................................................................................................AACCTCTGTCTCGATTG-----------------------------GCACCT........................................................................................................................................................................................................................................2311.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCA---CCACAGCAACAA...............................................1911.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAATATGGTGCACC....................................2011.001100000
................................................................................................................................................................................................................................................................................................GCATGCA-----ACACCACTGAA-T--------ACCA-------------------------------------CC--------------------------------------------ACA-------------------........................................................................2811.001100000
...............................ATCTCTCTTTA-CTCCGGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...........................................................................................................................................................................................................................ACCTCTGTCTCGATTG-----------------------------GCACCTGAA.....................................................................................................................................................................................................................................2511.001100000
................................TCTCTCTTTA-CTCCGGTGTCTGT-------------------------TTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..................................................................................................................................................................................................ATC------------------CATAACCTCTGTCTCGATT............................................................................................................................................................................................................................................................................2211.001100000
.......................................................T-------------------------TTACTCTG-TTTG------TTT--------GTGT...................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
......................................................................................................................................GC-------------ACTTGC--ACCCAAACCACC.............................................................................................................................................................................................................................................................................................................................................2011.001100000
........................................................................................................................................................................................................................ATAACCTCTGTCTCGATTG-----------------------------GC............................................................................................................................................................................................................................................2111.001100000
..............................................................................................................................................................................................................................TCTGTCTCGATTG-----------------------------GCACCTGAAAC...................................................................................................................................................................................................................................2411.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATATGGTGCACCGTC----.............................1911.001100000
droGri2
AACTG-T------------------CT-TCTTTCTCTCTTTA-CTTGGACATCTGTGATTTCTGTTAACTGAAACTGTTACTGTTACTG-TTACTCAAACTGTAACTGTAACTGTCT--GTG--CTTATCTGT----T---------GCAC------CTGCACCCAAACCA----------AC------CAC-CAACCAACCAACAAA-TACATCCATAACC----------TTG-----------------------------GCACCTGAAAT-CCATGAC---TCGCATGT--TTTTGTACCACAAC--A--------ACTA-------------------------------------CA--------------------------------------------ACA-------------------ACAACAGCCG---CAGCAGCAGCAATATCGTGCACCATC----CAACGATAGCCATCAA--------CAGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................................................GTACCACAAC--A--------ACTA-------------------------------------CA--------------------------------------------ACA-------------------ACAACA..................................................................2611.00110
...............................................................................................................................................................................................................................................................................AAAT-CCATGAC---TCGCATGT--TTTTGTACCA....................................................................................................................................................................................................2911.00110
.................................................................................TGTTACTG-TTACTCAAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
......................................................................................................................................................C------CTGCACCCAAACCA----------AC------CAC-C....................................................................................................................................................................................................................................................................................................................2111.00110
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAGCCATCAA--------CAGCA1811.00110
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCCG---CAGCAGCAGC.................................................20150.07110
droWil2
ATATA-TATATATAAATTTATTATTCC-TCGATCTAAATCTCTTTGCA----------------------------------CTATCCG-TGTG------TA----------T--GTGTGTGTGT----ATATTGTTT--------TGCAC------CTTCCTCTCCAAAA----------AA--------C-AACCAAACCATAAATCAACATCCATAAA------------------------------------T--TTCTGTGACCT------------------CATGCATGTTTGCACCAAAAGC-C--------ACCT-------------------------------------CAACAT------------CAA--CA-----ACAACAACA-ACCACCACA--ACAGCAG-----------------CCACCACAACAACAACAATATGGTGCACCATC----ATACAACAATTATCAA--------CAACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................A------------------------------------T--TTCTGTGACCT------------------CATGCA...............................................................................................................................................................................................................1913.00330000
....................................................................................................................................................................................................................................................................TTCTGTGACCT------------------CATGCATGTTTGCACCA....................................................................................................................................................................................................2813.00330000
...........................................................................................................................................................................................................................AA------------------------------------T--TTCTGTGACCT------------------CATGCATGTT...........................................................................................................................................................................................................2412.00220000
....................................................................................................................................................................................................................................................................TTCTGTGACCT------------------CATGCATGTTTGCACC.....................................................................................................................................................................................................2712.00220000
....................................AATCTCTTTGCA----------------------------------CTATCCG-............................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
........................................................................................................................................................................................................................ATAAA------------------------------------T--TTCTGTGACCT------------------CATGCC...............................................................................................................................................................................................................2311.00110000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAACAATTATCAA--------CAACA2111.00101000
...............ATTTATTATTCC-TCGATCTAAATCTCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00110000
.................................................................................................................................................................................................................................................................T--TTCTGTGACCT------------------CATGCA...............................................................................................................................................................................................................1811.00110000
.................................................................................................................................................................................................................................................................T--TTCTGTGACCT------------------CATGCATGTTTGCACC.....................................................................................................................................................................................................2811.00110000
...................................................................................................................GTGTGTGTGT----ATATTGTTT--------TGCAC------C........................................................................................................................................................................................................................................................................................................................................................2511.00101000
......................................................................................................................................................................................................AACCATAAATCAACATCCATA...........................................................................................................................................................................................................................................................................................2111.00101000
.....................................................................................................................................TGTTT--------TGCAC------CTTCCTCTCC...............................................................................................................................................................................................................................................................................................................................................2011.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAATATGGTGCACCA...................................2411.00110000
.............................................................................................................................................................................................................................................................................................................................................................................................................AACA-ACCACCACA--ACAGCAG-----------------CC...............................................................2211.00110000
........................................................................................................................................................................................................................ATAAA------------------------------------T--TTCTGTGACCT------------------CATGCA...............................................................................................................................................................................................................2311.00110000
..............................................................................................................................................................................................................................................................................................................................................................................AT------------CAA--CA-----ACAACAACA-ACCACCACA--AC.......................................................................................2711.00100010
........................................................................................................................................................................AAA----------AA--------C-AACCAAACCATAA........................................................................................................................................................................................................................................................................................................1911.00101000
.....................................................................................................................................................................................................................................................................TCTGTGACCT------------------CATGCATGTTTGCA.......................................................................................................................................................................................................2411.00101000
.....................................................................................................................................................................................................................................................................TCTGTGACCT------------------CATGCATGTTTGCACC.....................................................................................................................................................................................................2611.00110000
........................................TCTTTGCA----------------------------------CTATCCG-TGTG------TA----------T--G..................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
..............................................................................................................................................................TTCCTCTCCAAAA----------AA--------C-AACCAAACCA...........................................................................................................................................................................................................................................................................................................2611.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................ACAACA-ACCACCACA--ACAGCAG-----------------CCACCAC..........................................................2911.00101000
..................................................................................................................................................................................................................................................................................................................AAAGC-C--------ACCT-------------------------------------CAACAT------------CAA--CA-----ACA...........................................................................................................2411.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................CCACA--ACAGCAG-----------------CCACCACAAC.......................................................2211.00101000
............................................................................................................................................................................................................................A------------------------------------T--TTCTGTGACCT------------------CATGCATGTTTGCACC.....................................................................................................................................................................................................2911.00110000
............................................................................................................................................................................................................................A------------------------------------T--TTCTGTGACCT------------------CATGCATGTT...........................................................................................................................................................................................................2311.00101000
.................TTATTATTCC-TCGATCTAAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.......................................................................................................................................................................................................ACCATAAATCAACATCCAT............................................................................................................................................................................................................................................................................................1911.00101000
................................................................................................................................................................................................................................................................................................................................................................................................................A-ACCACCACA--ACAGCAG-----------------CCA..............................................................2011.00100100
........................................................................................................................................................................................................................................................................................................................C--------ACCT-------------------------------------CAACAT------------CAA--CA-----ACAACA........................................................................................................2211.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................ACA--ACAGCAG-----------------CCACCACAACA......................................................2120.50101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CA--ACAGCAG-----------------CCACCACAACA......................................................2030.33101000
........................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACA-ACCACCACA--AC.......................................................................................2040.25101000
.......................................................................................CG-TGTG------TA----------T--GTGTGTGTGT----A....................................................................................................................................................................................................................................................................................................................................................................................20100.10101000
dp5
AT---------------------------ATGTCTATATCTATCTCGAACATAT---------------------------ATTCTCTC-TCTT------TCCACATCG-TCT------GTG--T----GTGTCGTTT---------ACAC------CTCCCAACCAACCA----------ACCA--ACCACACACCCATCTACAACA-TC-------------------------------------------CTTAACACCCGTGATCGAAAC-CCAAA----------T--------GCACCAACGAACC--------ACCA----------AATGCACTATTGAACCAATAGCAGCCACAATACGGTAGCCAGC---------------------------------------------------------AGCAG---CCACAGTCACAGTCTGTGGCACCTCAGTGGCAACAACAGCAGCCAGCTGCATCCCAGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................AAA----------T--------GCACCAACGAACC--------ACC..................................................................................................................................................................................2013.0030300000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTGTGGCACCTCAGTGGCAACA........................2513.0030000000030
................................................................................................................................................................................................................................................................................AAC-CCAAA----------T--------GCACCAACGAACC--------.....................................................................................................................................................................................2212.0020200000000
......................................................................................................................................................................AACCA----------ACCA--ACCACACACCCATC.............................................................................................................................................................................................................................................................................................................2312.0020101000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACAGTCTGTGGCACCTCAGTGGC............................2612.0020200000000
...................................................................................................................................................................ACCAACCA----------ACCA--ACCACACACCCATCTAC..........................................................................................................................................................................................................................................................................................................2912.0020002000000
..........................................................................................................TCG-TCT------GTG--T----GTGTCGTTT---------ACAC------C........................................................................................................................................................................................................................................................................................................................................................2412.0020200000000
........................................................................................................................TG--T----GTGTCGTTT---------ACAC------CTCCCA...................................................................................................................................................................................................................................................................................................................................................2212.0020200000000
..............................................................................................................................................................................................................................................................CTTAACACCCGTGATCGAAAC-CC................................................................................................................................................................................................................................2312.0020200000000
...............................................................................................................CT------GTG--T----GTGTCGTTT---------ACAC------CTCCCA...................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
................................................................................................................................................................................................................................................................................................................CAACGAACC--------ACCA----------AATGCACTAT.............................................................................................................................................................2311.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCTGTGGCACCTCAGTGGCAACA........................2611.0010001000000
.............................................................................................................................................................................................CACACACCCATCTACAACA-.....................................................................................................................................................................................................................................................................................................1911.0010100000000
........................................................................................................CATCG-TCT------GTG--T----GTGTCGTT.............................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACAACAGCAGCCAGCTGCATCC.....2611.0010100000000
..................................................................................................................................................................................................................C-------------------------------------------CTTAACACCCGTGATCGAAAC-CCA...............................................................................................................................................................................................................................2511.0010100000000
.................................................................................................................................................................................................................................................................................................................................................TGCACTATTGAACCAATAGCAGCC.............................................................................................................................................2411.0010001000000
............................................................................................................................T----GTGTCGTTT---------ACAC------CTCCCAACCAACC............................................................................................................................................................................................................................................................................................................................................2711.0010000001000
.................................................................................................................................................................................................................................................................AACACCCGTGATCGAAAC-CC................................................................................................................................................................................................................................2011.0010000010000
...................................................................................................................................................................................................................................................................CACCCGTGATCGAAAC-CCA...............................................................................................................................................................................................................................1911.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCCAGCTGCATCCCA...2511.0010100000000
......................................................................................................................................................................................CCA--ACCACACACCCATCTA...........................................................................................................................................................................................................................................................................................................1911.0010001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGGCACCTCAGTGGCAACA........................2411.0010100000000
.........................................ATCTCGAACATAT---------------------------ATTCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................ACGGTAGCCAGC---------------------------------------------------------AGCAG---CC.........................................................1911.0010100000000
...........................................................................................................CG-TCT------GTG--T----GTGTCGTTT---------ACA................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................AACA-TC-------------------------------------------CTTAACACCCGTGATCGAAAC-CC................................................................................................................................................................................................................................2911.0010100000000
............................................................................................................G-TCT------GTG--T----GTGTCGTTT---------ACAC------CTC......................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................ATTGAACCAATAGCAGCCACA..........................................................................................................................................2111.0010000010000
.......................................................................................................................................TTT---------ACAC------CTCCCAACCAACCA----------ACCA--ACC........................................................................................................................................................................................................................................................................................................................2811.0010100000000
.........................................................................................................................................................................................................TACAACA-TC-------------------------------------------CTTAACACCCGTGATCGAA.....................................................................................................................................................................................................................................2811.0010100000000
............................................................................................................G-TCT------GTG--T----GTGTCGTTT---------ACA................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................................................ACATCG-TCT------GTG--T----GTGTCGTTT---------ACA................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.....................................................................................................................................................................................................................................................................CCCGTGATCGAAAC-CCAAA----------T--------G.........................................................................................................................................................................................................2111.0010000001000
..........................................................................................................TCG-TCT------GTG--T----GTGTCGTTT---------ACAC------CTCC.....................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
............................................................................................................................................................................................................AACA-TC-------------------------------------------CTTAACACCCGTGATCGAAAC-C.................................................................................................................................................................................................................................2811.0010001000000
............................................TCGAACATAT---------------------------ATTCTCTC-TCT.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGGCACCTCAGTGGC............................2011.0010000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCCAGCTGCATC......2111.0010001000000
............................................................................................................G-TCT------GTG--T----GTGTCGTTT---------A..................................................................................................................................................................................................................................................................................................................................................................1811.0010000010000
......................................................................................................................................................C------CTCCCAACCAACCA----------ACCA--ACCA.......................................................................................................................................................................................................................................................................................................................2311.0010100000000
.............................................................................................................................................................................................CACACACCCATCTACAACA-TC-------------------------------------------CTTAAC..................................................................................................................................................................................................................................................2711.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................ATACGGTAGCCAGC---------------------------------------------------------AGCAG---CCACA......................................................2411.0010100000000
........................................................................................................................................................................................................................................................................GTGATCGAAAC-CCAAA----------T--------GCA.......................................................................................................................................................................................................2011.0010000001000
..................................................................................................................................................................................................................................................................ACACCCGTGATCGAAAC-CCAAA----------T--------GCA.......................................................................................................................................................................................................2611.0010000010000
.....................................................................................................................................................................................................................................................................................................................................................................AGCCACAATACGGTAGCCA..............................................................................................................................1911.0010100000000
..................................................................................................................................................................................................................................................................................................................ACGAACC--------ACCA----------AATGCACTATTGAACC.......................................................................................................................................................2711.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CCACAGTCACAGTCTGTGGCACCTC..................................2811.0010100000000
......................................................................................................................................................................................................................................................................CCGTGATCGAAAC-CCAAA----------T--------G.........................................................................................................................................................................................................2011.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---CCACAGTCACAGTCTGTGGCACCT...................................2811.0010100000000
..............................................................................................................TCT------GTG--T----GTGTCGTTT---------ACA................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..........................................................................................TCTT------TCCACATCG-TCT------GTG--T----GTGTC................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.......................................................................................................ACATCG-TCT------GTG--T----GTGTCGTTT---------A..................................................................................................................................................................................................................................................................................................................................................................2311.0010001000000
......................................................................................................CACATCG-TCT------GTG--T----GTGTCGTTT---------ACAC------.........................................................................................................................................................................................................................................................................................................................................................2711.0010000001000
.................................................................................................................................................................................................................................................................AACACCCGTGATCGAAAC-CCA...............................................................................................................................................................................................................................2111.0010000010000
.................................................................................................................................................................CAACCAACCA----------ACCA--ACCACACACC.................................................................................................................................................................................................................................................................................................................2411.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTGTGGCACCTCAGTGGCAA..........................2311.0010010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGCAACAACAGCAGCCAGCTGCATC......2811.0010100000000
...................................................................................................................................................................................................................................................................CACCCGTGATCGAAAC-CCAAA----------T--------..........................................................................................................................................................................................................2211.0010100000000
........................................................................................................................................................................................................................................................................GTGATCGAAAC-CCAAA----------T--------GCACCAACGAA...............................................................................................................................................................................................2811.0010100000000
.........................................................................................................ATCG-TCT------GTG--T----GTGTCGTTT---------ACAC------C........................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
droPer2
ATG--GT------------------CTATATGTCTATCTCTATCTCGAACATAT---------------------------ATTCTCTC-TCTT------TCCACATCG-TCT------GTG--T----GTGTCGTTT---------ACAT------CTCCCAACCAACCA----------AC------CACACACCCATCTACAACA-TC-------------------------------------------CTTAACACCCGTGATCGAAAC-CCAAA----------T--------GCACCAACGAACC--------ACCA----------AATGCACCATTGAACCAATAGCAGCCACAATACGGTAGCCAGC---AG--CA---------------------GCA-------------------GCAGCAGCCACAGCCACAGCCACAGTCTGTGGCACCTCAGTGGCAACAACAGCAGCCAGCTGCATCCCAGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................CAAA----------T--------GCACCAACGAACC--------ACC..................................................................................................................................................................................2112.002020000
...................................................................................................................................................................................................................................................................................................................................................................GCAGCCACAATACGGTAGCCAGC---AG--.....................................................................................................................2511.001010000
..........................................................................................................TCG-TCT------GTG--T----GTGTCGTTT---------ACA................................................................................................................................................................................................................................................................................................................................................................2211.001000100
.................................................................................................................................................................................................................................................................................AC-CCAAA----------T--------GCACCAACGAACC--------ACCA----------AA.....................................................................................................................................................................2711.001010000
............................................................................................................................................................................................................................................................................................................................................................................ATACGGTAGCCAGC---AG--CA---------------------GC............................................................................................2011.001001000
...............................................................................................................................................................................................................................................................................................................CCAACGAACC--------ACCA----------AATGCACCATT............................................................................................................................................................2511.001010000
............................................................................................................G-TCT------GTG--T----GTGTCGTTT---------ACAT------CTCCC....................................................................................................................................................................................................................................................................................................................................................2611.001010000
.............................................................................................T------TCCACATCG-TCT------GTG--T----GTGTCGT..............................................................................................................................................................................................................................................................................................................................................................................2411.001010000
............................................................................................................................................................................................................................................................................................................................................................................ATACGGTAGCCAGC---AG--CA---------------------GCA-------------------........................................................................2111.001000001
.........................................ATCTCGAACATAT---------------------------ATTCTCTC-TCT.........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCACAGTCTGTGGCACCTCAGTGGC............................2711.001010000
.............................................................................................................................................................................................................ACA-TC-------------------------------------------CTTAACACCCGTGATCGAA.....................................................................................................................................................................................................................................2411.001010000
................................................................................................................................................................................................................................................................................................................CAACGAACC--------ACCA----------AATGCACCA..............................................................................................................................................................2211.001010000
...................................................................................................................................................................................................................................................................................................T--------GCACCAACGAACC--------ACCA----------AAT....................................................................................................................................................................2111.001010000
...................................................................................TCTCTC-TCTT------TCCACATCG-TC......................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
........................................................................................................................................................................................................................................................................................................................................................TTGAACCAATAGCAGCCA............................................................................................................................................1811.001010000
..G--GT------------------CTATATGTCTATCTCTATCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..................................................................................................................................................................................................................................................................................................................................................GCACCATTGAACCAATAGC.................................................................................................................................................1911.001010000
......................................................................................................................................................................................................................................................................................................................................................................GCCACAATACGGTAGCCAGC---AG--C....................................................................................................................2311.001010000
.........................................................................................................................................................................................................................................................................................................................................................................ACAATACGGTAGCCAGC---AG--CA---------------------GC............................................................................................2311.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGCAACAACAGCAGCCAGCTG..........2411.001010000
........................................................................................................................................................................................................................................................................................A----------T--------GCACCAACGAACC--------ACCA----------.......................................................................................................................................................................1911.001010000
...................................................................................................................................................................................................................................................................................................................................................................................AGCCAGC---AG--CA---------------------GCA-------------------GCAGC...................................................................19200.051010000
droAna3
ATG--GT------------------CT-TCTGTCTATCTCTATTTCCAACATATA--------------------------TCTATCTC-TATG------TCTACATCA-AAT------GTGAAT----GTGTTGTTT--------CGCAC--CC---ACCCGACAAAT----TCGACAAAAACAAAAACAC-CATCCATCTACAA---TA------------------------------AAAT--AAAAACCCATT--ACCTGTGATCGCACA-CCATGACCGTAAACATGCATGTTGGCACCACCA-------------------------------------------------------------------------------------------------CCGAT--CCACCGACT----------------------AGCAGCAGCAATACGGTGCTCCATC----CTACGGTGGCTACCAG--------CAACASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................CCACCA-------------------------------------------------------------------------------------------------CCGAT--CCACCGACT----------------------..........................................................2013.003300000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGTGGCTACCAG--------CAACA2013.003300000
..........................................................................................................................................................................................................................................................AACCCATT--ACCTGTGATCGCA.....................................................................................................................................................................................................................................2112.002200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAATACGGTGCTCC....................................2112.002110000
...........................................................................................................................................................................................................................................................................................................GGCACCACCA-------------------------------------------------------------------------------------------------CCGAT--CCACCGACT----------------------..........................................................2412.002200000
...........................................................................................................................................................................................................................................................ACCCATT--ACCTGTGATCGCACA-CC................................................................................................................................................................................................................................2412.002100001
............................................................................................................................................................................................................................................................................................................GCACCACCA-------------------------------------------------------------------------------------------------CCGAT--CCACCGACT----------------------AG........................................................2512.002000002
...................................................................................................................................................................................................................................................................................................TGCATGTTGGCACCACCA-------------------------------------------------------------------------------------------------CCGAT--CCA......................................................................................2612.002000002
.................................................................................................................................................................................................................................................................................................................ACCA-------------------------------------------------------------------------------------------------CCGAT--CCACCGACT----------------------AGCA......................................................2212.002100001
........................................................................................................................................................................................................................................................................................................................................................................................................................GAT--CCACCGACT----------------------AGCAGCAG..................................................2012.002200000
.................................................................................................................................................................................................................................................................................................CATGCATGTTGGCACCACCA-------------------------------------------------------------------------------------------------CCG.............................................................................................2312.002000002
............................................................................................................................................................................................................................................................CCCATT--ACCTGTGATCGCACA-..................................................................................................................................................................................................................................2112.002100001
..G--GT------------------CT-TCTGTCTATCTCTATTTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CT----------------------AGCAGCAGCAATACGGTG........................................2012.002000002
............................................................................................................................T----GTGTTGTTT--------CGCAC--CC---ACC.....................................................................................................................................................................................................................................................................................................................................................2012.002100001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGCTCCATC----CTACGGTGGCTACC...............2611.001100000
..................................................................................................................................................................................................................................................................................................ATGCATGTTGGCACCACCA-------------------------------------------------------------------------------------------------CCGAT--C........................................................................................2511.001100000
......................................................................................................................................................................................................................................................................................ATGACCGTAAACATGCATGTTGGCA.......................................................................................................................................................................................................2511.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................T--CCACCGACT----------------------AGCAGCAGCAA...............................................2111.001100000
.......................................................................................................................................................................................................................................................................................TGACCGTAAACATGCATGTTGGCACCA....................................................................................................................................................................................................2711.001100000
..........................................................................................................................................................................................................................................................AACCCATT--ACCTGTGATCGCACA-..................................................................................................................................................................................................................................2311.001100000
................................................................................................................T------GTGAAT----GTGTTGTTT--------CGCAC--CC---ACCC....................................................................................................................................................................................................................................................................................................................................................2711.001000001
ATG--GT------------------CT-TCTGTCTATCTCTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
............................................................................................................................................................................................................................................................................TCGCACA-CCATGACCGTAAACA...................................................................................................................................................................................................................2211.001100000
................................................................................................................T------GTGAAT----GTGTTGTTT--------CGCAC--CC---ACC.....................................................................................................................................................................................................................................................................................................................................................2611.001000001
..............................................................................................................AAT------GTGAAT----GTGTTGTTT--------CGCAC--C............................................................................................................................................................................................................................................................................................................................................................2411.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAATACGGTGCTCC....................................1811.001100000
........................................................................................................................................................................................................................................................AAAACCCATT--ACCTGTGATC........................................................................................................................................................................................................................................2011.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCATC----CTACGGTGGCT..................1911.001010000
.........................................................................................................................GAAT----GTGTTGTTT--------CGCAC--CC---ACC.....................................................................................................................................................................................................................................................................................................................................................2311.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAATACGGTGCTCCATC----C............................2611.001100000
.......................................................................................................................................................................................................................................................AAAAACCCATT--ACCTGTGATCGCACA-CA................................................................................................................................................................................................................................2811.001000001
................................................................................................................................................................................................................................................................TT--ACCTGTGATCGCACA-CCATGACC..........................................................................................................................................................................................................................2511.001000001
........................................................................................................................................................................................................................................................AAAACCCATT--ACCTGTGATCGCACA-..................................................................................................................................................................................................................................2511.001000001
.......................................................................................................................................................................................................................................................................................................TGTTGGCACCACCA-------------------------------------------------------------------------------------------------CCGAT--C........................................................................................2011.001100000
...............................................................................................................................................................................................................................................................ATT--ACCTGTGATCGCACA-CCA...............................................................................................................................................................................................................................2111.001000001
..........................................................................................................................................................................................................................................................AACCCATT--ACCTGTGATCGCACA-CCAT..............................................................................................................................................................................................................................2711.001100000
............................................................................................................................................................................................................................................................................................GTAAACATGCATGTTGGCACC.....................................................................................................................................................................................................2111.001000001
........................................................................................................................................................................................................................................................................................GACCGTAAACATGCATGTTGGCA.......................................................................................................................................................................................................2311.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GACT----------------------AGCAGCAGCAATACGGTGCT......................................2411.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAATACGGTG........................................1811.001100000
...................................................................................................................................................................................................................................................................................................TGCATGTTGGCACCACCA-------------------------------------------------------------------------------------------------CC..............................................................................................2011.001000001
..................................................................................................................................TGTTGTTT--------CGCAC--CC---ACCCGACA................................................................................................................................................................................................................................................................................................................................................2311.001100000
........................................................................................................................................................................................................................................................AAAACCCATT--ACCTGTGATCGCACA-CC................................................................................................................................................................................................................................2711.001100000
...................................................................................................................................................................................................................................................................................................TGCATGTTGGCACCACCA-------------------------------------------------------------------------------------------------CCGAT--CCACC....................................................................................2811.001100000
.................................................................................................................................................................................................................................................................................................................ACCA-------------------------------------------------------------------------------------------------CCGAT--CCACCGACT----------------------AGC.......................................................2111.001100000
.......................................................................................................................................................................................................................................................................................TGACCGTAAACATGCATGTTGGCACCAC...................................................................................................................................................................................................2811.001100000
..............................................................................................................AAT------GTGAAT----GTGTTGTTT--------CG..................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..................................................................................................................................................................................................................................................................................................................CCA-------------------------------------------------------------------------------------------------CCGAT--CCACCGACT----------------------AGCAGCAGCA................................................2711.001100000
......................................................................................................................................................................................................................................................................CTGTGATCGCACA-CCATGACCGTAAACA...................................................................................................................................................................................................................2811.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................GAT--CCACCGACT----------------------AGCAGCAGCAATACGG..........................................2811.001100000
.................................................................................................................................................................................................................................................................T--ACCTGTGATCGCACA-CCATGACCGTA.......................................................................................................................................................................................................................2711.001000010
ATG--GT------------------CT-TCTGTCTATCTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100
ATG--GT------------------CT-TCTGTCTATCTCTAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----CTACGGTGGCTACCAG--------CA...2011.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGTGCTCCATC----CTACGGTGGCT..................2611.001100000
..........................................................................................................................................................................................................................................................AACCCATT--ACCTGTGATCGCACA-CCATG.............................................................................................................................................................................................................................2811.001100000
.................................................................................................................................................................................................................................................................................................CATGCATGTTGGCACCACC..................................................................................................................................................................................................1911.001000100
....................................................................................................................................................................................................................................................................................................GCATGTTGGCACCACCA-------------------------------------------------------------------------------------------------CCGAT--CCACC....................................................................................2711.001100000
.................................................................................................................................................................................................................................................................................................................ACCA-------------------------------------------------------------------------------------------------CCGAT--CCACCGACT----------------------AGCAGCAGCA................................................2811.001100000
..............................................................................................................AAT------GTGAAT----GTGTTGTTT--------CGCAC--CC---ACC.....................................................................................................................................................................................................................................................................................................................................................2811.001000001
..............................................................................................................................................................ACCCGACAAAT----TCGACAAAAACAAA...........................................................................................................................................................................................................................................................................................................................2511.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................GACT----------------------AGCAGCAGCAATACGGTG........................................2211.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTGCTCCATC----CTACGGTGGC...................2311.001010000
.........................................................................................................................................................................................................................................................AAACCCATT--ACCTGTGATCGCACA-CCAT..............................................................................................................................................................................................................................2811.001100000
......................................................................................................TACATCA-AAT------GTGAAT----GTGTTGT..............................................................................................................................................................................................................................................................................................................................................................................2311.001000010
....................................................................................................................................................................................................................................................................ACCTGTGATCGCACA-CCATGACC..........................................................................................................................................................................................................................2311.001000010
......................................................................................................................................................................................................................................................................................ATGACCGTAAACATGCATGTTGGCACCA....................................................................................................................................................................................................2811.001100000
..........................................................................................................................................................................................................................................................AACCCATT--ACCTGTGATCG.......................................................................................................................................................................................................................................1911.001100000
.......................................................................................................................GTGAAT----GTGTTGTTT--------CGC.................................................................................................................................................................................................................................................................................................................................................................1811.001000001
............................................................................................................................................................................................................................................................CCCATT--ACCTGTGATCGCACA-CCATGACC..........................................................................................................................................................................................................................2911.001000001
.............................................................................................................................................................................................................................................................................CGCACA-CCATGACCGTAAA.....................................................................................................................................................................................................................1911.001100000
.......................................................................................................................................................................................................................................................................TGTGATCGCACA-CCATGACC..........................................................................................................................................................................................................................2011.001000001
.......................................................................................................................................................................................................................................................................TGTGATCGCACA-CCATGACCGTAAACA...................................................................................................................................................................................................................2711.001000001
..........................................................................................................................................................................................................................................................AACCCATT--ACCTGTGATCGC......................................................................................................................................................................................................................................2011.001000001
................................................................................................................................................................................ACAAAAACAAAAACAC-CA...................................................................................................................................................................................................................................................................................................................1830.331010000
droBip1
ATG--GT------------------CT-TCTATCTATCTCTATTTCCAACATATA--------------------------TCTATATC-TATG------TCTACATCA-AAT------GTGAAT----GTGTTGTTT--------CGCAC--CC---ACCCGA----CAAAATCGACAAAAACA--AACAC-CATCCATCTACAA---TT------------------------------AAAT--AAAAACCCATTACACCTGTGATCGC----------------ACATGCATGTTGGCACCACCA-------------------------------------------------------------------------------------------------CCGAT--CCACCG-------------------AG---TAGCAGCAGCAATACGGTGCTCCATC----CTACGGTGGCTACCAA--------CAGCASizeHit CountTotal NormTotal
No Reads
droKik1
CTCTA-TCTCTCTGTCTTTC--------------TTCCTCTA-------TATAT------------------AACTCTCTTTCTCTCTC-TCTC------TCTATCTCTGACTATGTGTGTG----TATCTCT-CTTTCTCTCTCCCGTGT------CTC-----CCAC-A----------AT------TAT-TGTTTATATAAAAAA--A------------------------------AACA---------CATA--TTTTGCAATTG-----------------------------------CCTCA-G-----------------------------------ATCAACGGCAGCGGAGTTGCAGCTGC--ACAGCAG--CA---------------------ACA-------------------GT---CGCAA---GCGCAGC-------------------------------AACAGCAG--------CAGCASizeHit CountTotal NormTotal
No Reads
droFic1
AA---GT------------------CT-CTTGTCTATCTCTATTTTCAACATAT---------------------------TCTATCTG-TCTG------TCTACATCC-ACT------GTGAAT----GTGTTGTAC---------GCAC------CTCCCAACCAACCA----------AA------CAA-TATCCATCAATGAAT-TC------------------------------AAAT--CACGA-CCATA--ACCTGTGATCGAAAC-CCATGAC---AAACACGCATGCTGGCACCACCGAACC--------AC--------------------------------------------------------------------TCAACTACTGCACCACAAAA--CCACCGATTGAGTAAC------AGCAG---CAGCAGCAGCAGTACGGTGCTCCTTC----CTACGATGGCTACCAG--------CAGCASizeHit CountTotal NormTotal
No Reads
droEle1
----------------------------------TATCTCTATCTCCAACATAT---------------------------TCTATCTG-TCTA------TCTACATCC-ACT------GTGAAT----GTGTTGTAT---------GCAC------CTCCCAACCAATAA----------AA------CAC-CACC--------------------------------------------ATAC---------CATA--ACTTGTGATCGAAAC-CCATGTC---AAACATGCATGTTGGCACCACCGAAAC--------ACCA-------------------------------------C---------------------------------CAATGCACCACTGCA--CCACCGGTCGAAT------------AG---CAGCAGCAGCAGTACGGTGCTCCGTC----TTACGATGGCCAGCAG--------CAGCASizeHit CountTotal NormTotal
No Reads
droRho1
G----GT------------------CT-TCTGTCTATCTCTATCTCCAACATAT---------------------------TCTATCTG-TCTG------TGTACATCC-ACT------GTGAAT----GTGTCGAAT---------GCAC------CTCCCAACCAATAA----------AA------CAC-CACCCATCTATGAAA-TC------------------------------AAAC---------CATA--ACCTGTGATCGAAAC-CCATGTC---GAACATGCATGTTGGCACCACCGAA-C--------ACCA-------------------------------------CC-----------------AA--------TGCACCAATGTACCACTGCA--CCACCGATTGAAT---------AGCAG---CAGCAGCAGCAGTACGGTGCTCCGTC----TTACGATGGCCAGCAG--------CAGCASizeHit CountTotal NormTotal
No Reads
droBia1
----------------------------------TATCTCTATCTCCAACATAT---------------------------TCTATCTG-TCTG------TCTACATCC-AAT------GTGAAT----GTGTCGTAC---------GCAC------CTCCCAACCAACAA----------CA------CAC-CACCCATCTTCGAAA-TC------------------------------ACAC---------CATA--CCCTGTGGTCGAAAC-CCATGAC---AAACATGCATGCTGGCACCACCAAA-C--------ACCA-------------------------------------AC--------------------------------------------GACCATCACTG-------------------AG---CAGCAGCAGCAGTACGGTGCTCCTTC----CTACGACGGCTACCAG--------CAGCASizeHit CountTotal NormTotal
No Reads
droTak1
A-G--TT------------------CT-TCTGTCTATCTCTATCTCCAACATAT---------------------------TCTATCTG-TCTG------TCTACATCC-AAT------GTGAAT----GTGTCGTAT---------GCAC------CTCCCAACCAACAA----------AACA--AACAC-CACCCATCAATGAAA-TC------------------------------AAAC---------CATA--ACCTGTGATCGAAAC-CCATGAC---AAACATGCATGTTGGCACCACCAAA-A--------ACCA---------------------------------------------------------------------------------CTGCA--CCACCGGTTGAAC---------AGCAG---CAGCAGCAGCAGTACGGTGCTCCGTC----TTACGATGGCCACCAG--------CAGCASizeHit CountTotal NormTotal
No Reads
droEug1
G-----T------------------CT-ATTGTCTATCTCTATTTCCAACATAT---------------------------TCTCTCTG-TCTA------TCTACATCC-AAT------GTGAAT----GTGTCGTAT---------AAAC------CTTCCAACCAACAA----------AA------CAC-CATCCATCAATGAAA-TC------------------------------AAAC---------CATA--ACCTGTGATCGAAAC-CCATGAC---AAACATGCATGTTGGCACCACCGAA-C--------ACCA-------------------------------------CC-----------------------------------------AATGCA--CCACCGATTGAAT---------AGCAA---CAGCAGCAGCAGTACGGTGCTCCGTC----TTACGGTAGTCAACAG--------CAGCASizeHit CountTotal NormTotal
No Reads
dm3
ATG--GT------------------CT-TTTGTCTATCTCTATCTCCAACATAT---------------------------TCTATCAATTCTA------TCTACATCC-AAT------GTGAAT----GTGTCGTAT---------GCAC------CTCCCAACCAACAA----------AA------CAC-CACCCATCTACGAAT-TA------------------------------AAAT---------CATA--ACCTGTGATCGAAAC-CCATGTC---GAACATGCATGTTGGCACCACCAAA-C--------ACCA-------------------------------------CCA----------------------------CACCACTGCACCACTGCA--CCATCGGTTGAATCT---------------CAGCAGCAGCAGTACGGTGCTCCGTC----TTACGATGGC---CAG--------CAGCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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droSim2
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Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
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....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---CAGCAGCAGCAGTA.............................................18200.05100000000001000000
droSec2
G----GT------------------CT-TCTGTCTATCTCTATCTCCAACATAT---------------------------TCTATCTATTGTA------TCTACATCC-AAT------GTGAAT----GTGTCGTAT---------GCAC------CTCCCAACCAACAA----------AA------CAC-CACCCATCTACGAAT-TT------------------------------AAAT---------CATA--ACCTGTGACCGAAAC-CCATGTC---GAACATGCATGTTGGCACCACCAAA-C--------ACCA-------------------------------------CTGCAC------------CAA--------TGCACCAATGCACCACTGCA--CCACCGGTTGAATCTC------AGCAG---CAGCAGCAGCAGTACGGTGCTCCGTC----TTACGATGGCCAGCAG--------CAGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................AAT------GTGAAT----GTGTCGTAT---------GCA................................................................................................................................................................................................................................................................................................................................................................2112.0020200
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.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACGGTGCTCCGTC----TTACGATGGC...................2611.0011000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGTACGGTGCTCCGTC----T............................2611.0011000
.................................................................................................................................................................................................................................................................A--ACCTGTGACCGAAAC-CCATGTC---G.......................................................................................................................................................................................................................2411.0010001
...........................................................................................................................................................................................................................................................................ACCGAAAC-CCATGTC---GAACA...................................................................................................................................................................................................................2011.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTGAATCTC------AGCAG---CAGCAGC....................................................2411.0011000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTACGGTGCTCCGTC----TTACGATGGC...................2811.0011000
....................................................................................................................................................................................................................................................................ACCTGTGACCGAAAC-CCATGTC---GAA.....................................................................................................................................................................................................................2511.0011000
...............................................................................................................AT------GTGAAT----GTGTCGTAT---------G..................................................................................................................................................................................................................................................................................................................................................................1811.0010001
.............................................................................................................................................................................................................................................................................................................................................................................................................................CCACCGGTTGAATCTC------AGCA...............................................................2011.0010100
.................................................................................................................................................................................................................................................................................................CATGCATGTTGGCACCACCA.................................................................................................................................................................................................2011.0010001
droYak3
ATG--GT------------------CT-CTTGTCTATCTCTATCTCCAACATAT---------------------------TCTATCTG-TCTG------TCCACATGC-AAT------GTGAAT----GTGTCGTAT---------GCAC------CTCCCAACCAACAA----------AA------CAC-CAC-------------TC------------------------------AAAT---------CATT--ACCTGTGATCGCAAC-CCATGTC---AAACATGCATCTTGGCACCACCCAA-CTTCAATGCACCACCACTGCACCAATGCACCA------------------CTGCAC------------CAC--------TGCACCAATGCAC-----------------------------------------------------CACTGCTCCACT----GCACCACTGC--TCCA--------CTGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................TGTGATCGCAAC-CCATGTC---A.......................................................................................................................................................................................................................2015.00500000050000
..................................................................................................................................................................................................AC-------------TC------------------------------AAAT---------CATT--ACCTGTGATCGCAAC-CC................................................................................................................................................................................................................................2912.00220000000000
..............................................................................................................AAT------GTGAAT----GTGTCGTAT---------GCAC------C........................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.......................................................................................................................................................................................................................................................................TGTGATCGCAAC-CCATGTC---AAACA...................................................................................................................................................................................................................2411.00100000010000
....................................................................................ATCTG-TCTG------TCCACATGC-A.......................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
....................................................................................................................................................................................................................................................................................................................CAA-CTTCAATGCACCACCAC.............................................................................................................................................................................2011.00101000000000
.........................................................................................................................GAAT----GTGTCGTAT---------GCAC------CTCCCAACCA...............................................................................................................................................................................................................................................................................................................................................2711.00100000010000
..........................................................................................................................AAT----GTGTCGTAT---------GCAC------CTCCCAACCAAC.............................................................................................................................................................................................................................................................................................................................................2811.00100000010000
.TG--GT------------------CT-CTTGTCTATCTCTATCTCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
....................................................................................................................................................................................................................................................T---------CATT--ACCTGTGATCGCAAC-CC................................................................................................................................................................................................................................2211.00110000000000
.........................................................................................................................................................................................................................................................................TGATCGCAAC-CCATGTC---AAA.....................................................................................................................................................................................................................2011.00101000000000
..........................................................................................................TGC-AAT------GTGAAT----GTGTCGTAT---------GCA................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
..............................................................................................................AAT------GTGAAT----GTGTCGTAT---------GC.................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...............................................................................................................................................................................................................................................................ATT--ACCTGTGATCGCAAC-..................................................................................................................................................................................................................................1811.00110000000000
....................................................................................................................................................................................................................................................T---------CATT--ACCTGTGATCGCAAC-C.................................................................................................................................................................................................................................2111.00110000000000
..............................................................................................................AAT------GTGAAT----GTGTCGTAT---------GCAC------CTCCCA...................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
...........................................................................................................................................................................................................................................................................ATCGCAAC-CCATGTC---AAACATGCATCT............................................................................................................................................................................................................2711.00101000000000
..................................................................................................................................................................................................AC-------------TC------------------------------AAAT---------CATT--ACCTGTGATCGCA.....................................................................................................................................................................................................................................2511.00101000000000
........................................................................................................................TGAAT----GTGTCGTAT---------GCAC------CTCCCAACCA...............................................................................................................................................................................................................................................................................................................................................2811.00100000010000
.......................................................................................................................................................................................................................................................................TGTGATCGCAAC-CCATGTC---AAA.....................................................................................................................................................................................................................2211.00100000010000
...........................................................................................................................................................................................................................................................................................................GGCACCACCCAA-CTTCAATGC.....................................................................................................................................................................................2111.00101000000000
...................................................TAT---------------------------TCTATCTG-TCTG------TCCACA............................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000
droEre2
ATG--GT------------------CT-TTTGTCTATCTCTATCTCCAACATAT---------------------------TCTATCTG-TCTG------TCCACATGC-AAT------GTGAAT----GTGTCGTAT---------GCAC------CTCCCAACCAACAA----------AA------CAC-CGCCCATCTACGAAA-CC------------------------------AAAT---------CATA--ACCTGTGATCGAAAC-CCATGTC---AAACATGCATGTTGG-GCCACCAAA-C--------ACCA-------------------------------------CTGCAC------------CAC--------TGCACCAATGCACCACTGCA--CCACCGATTGAATATCAGCAGCAGCAA---CAGCAGCAGCAGTACGGTGCTCCGTC----TTACGATGGCCAGCAG--------CAGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAATATCAGCAGCAGCAA---C..........................................................2315.0052000120
..........................................................................................................TGC-AAT------GTGAAT----GTGTCGTAT---------GCAC------C........................................................................................................................................................................................................................................................................................................................................................2612.0022000000
...................................................................................TATCTG-TCTG------TCCACATGC-AAT------...............................................................................................................................................................................................................................................................................................................................................................................................2212.0021000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGGTGCTCCGTC----TTACGATGGCC..................2612.0022000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGTACGGTGCTCC....................................2212.0020000020
..................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAATATCAGCAGCAGCAA---CAGC.......................................................2612.0021000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGTACGGTGCT......................................2111.0010000100
..................................................................................................................................................................................................................................................AAT---------CATA--ACCTGTGATCGAAAC-..................................................................................................................................................................................................................................2211.0010010000
...............................................................................................................................................................................................................................................................................................AACATGCATGTTGG-GCCACCAAA-C--------.....................................................................................................................................................................................2411.0011000000
.......................................................................................................................................................................................................................................................................................TGTC---AAACATGCATGTTGG-GCCACCA.................................................................................................................................................................................................2611.0011000000
............................................................................................................................T----GTGTCGTAT---------GCAC------CTCCC....................................................................................................................................................................................................................................................................................................................................................1911.0011000000
.........................................................................................................................GAAT----GTGTCGTAT---------GCAC------CTCCCA...................................................................................................................................................................................................................................................................................................................................................2311.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA---CAGCAGCAGCAGTACGGTGCTC.....................................2611.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACCGATTGAATATCAGCAGCAGCA...............................................................2411.0010010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTC----TTACGATGGCCAGCAG--------C....2011.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAATATCAGCAGCAGC................................................................2011.0010000010
.......................................................................................................................GTGAAT----GTGTCGTAT---------GCA................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
............................................................................................................................T----GTGTCGTAT---------GCAC------CTCCCAAC.................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGTACGGTGCTCCG...................................1811.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---CAGCAGCAGCAGTACGGT.........................................2011.0010000010
..............................................................................................................................................................................................................................................................................................AAACATGCATGTTGG-GCCACCA.................................................................................................................................................................................................2211.0011000000
...............................................AACATAT---------------------------TCTATCTG-TCTG------TCCACA............................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----TTACGATGGCCAGCAG--------C....1911.0011000000
................................................................................................................................................................................................................................................................TA--ACCTGTGATCGAAAC-CCATGTC---A.......................................................................................................................................................................................................................2511.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATTGAATATCAGCAGCAGCAA---C..........................................................2511.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGTACGGTGCTCCGTC----TT...........................2211.0010000010
......................................................................................................................................................................................................................................................................................ATGTC---AAACATGCATGTTGG-GCCACC..................................................................................................................................................................................................2611.0011000000
......................................................................................................................................................................................................ATCTACGAAA-CC------------------------------AAAT---------CATA--ACCTGTGAT.........................................................................................................................................................................................................................................2911.0011000000
......................................................................................................................................................................................................................................................................................ATGTC---AAACATGCATGTTGG-GCCACCA.................................................................................................................................................................................................2711.0011000000
..........................T-TTTGTCTATCTCTATCTCCAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACCGATTGAATATCAGCAGC...................................................................2011.0010000010
............................................TCCAACATAT---------------------------TCTATCTG-TCT.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
...............................................................................................................AT------GTGAAT----GTGTCGTAT---------GCAC------CT.......................................................................................................................................................................................................................................................................................................................................................2311.0011000000
.TG--GT------------------CT-TTTGTCTATCTCTAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
........................................................................................................CATGC-AAT------GTGAAT----GTGTCGTAT---------G..................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTC----TTACGATGGCCAGCA..............1911.0010000010
...............................................................................................................AT------GTGAAT----GTGTCGTAT---------GCAC------C........................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---CAGCAGCAGCAGTACGGTGCTC.....................................2511.0011000000
.......................................................................................................................................................................................................................................................................TGTGATCGAAAC-CCATGTC---........................................................................................................................................................................................................................1911.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCAGCAGCAGCAA---CA.........................................................2311.0010000100
.......................................................................................................................................................................................................................................................................TGTGATCGAAAC-CCATGTC---A.......................................................................................................................................................................................................................2011.0010000100
...................................................................................................................................................................ACCAACAA----------AA------CAC-CGCCCATCTACG.........................................................................................................................................................................................................................................................................................................2511.0011000000
...................................................................................................................................GTCGTAT---------GCAC------CTCCCAACC................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.......................................................................................................................................................................................................................................................................................................TGTTGG-GCCACCAAA-C--------ACCA-------------------------------------CTGCAC------------C.........................................................................................................................2711.0011000000
....................................................................................................................................................................................................................................................................ACCTGTGATCGAAAC-CCATGTC---........................................................................................................................................................................................................................2211.0010000100
.................................................................................................................................................................................................................................................................................................CATGCATGTTGG-GCCACCA.................................................................................................................................................................................................1911.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----TTACGATGGCCAGCAG--------CA...1911.0011000000
...............................................................................................................AT------GTGAAT----GTGTCGTAT---------GCA................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTC----TTACGATGGCCAGC...............1811.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAATATCAGCAGCAGCA...............................................................2111.0010000010
.......................................................................................................................................................................................................................................................................................................TGTTGG-GCCACCAAA-C--------ACCA-------------------------------------CT..........................................................................................................................................2211.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTGAATATCAGCAGCAGCAA---C..........................................................2411.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGTACGGTGCTCCGTC----TTACGAT......................2711.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTACGGTGCTCCGTC----TTACGATGT....................2611.0010001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CACCGATTGAATATCAGCAGCA..................................................................2211.0011000000
...................................................................................................................................................................................................................................................................................................TGCATGTTGG-GCCACCAAA-C--------ACC..................................................................................................................................................................................2311.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAGCAGCAGCAA---CAGCA......................................................2011.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA---CAGCAGCAGCAGTACGGT.........................................2311.0010000010
.......................................................................................................................GTGAAT----GTGTCGTAT---------GCAC------CTCC.....................................................................................................................................................................................................................................................................................................................................................2311.0011000000
.....................................................................................................................................................................................AA------CAC-CGCCCATCTACGA........................................................................................................................................................................................................................................................................................................1811.0011000000
..............................................................................................................................................................................................................AA-CC------------------------------AAAT---------CATA--ACCTGTGATCGAA.....................................................................................................................................................................................................................................2511.0011000000
..........................................................................................................TGC-AAT------GTGAAT----GTGTCGTAT---------GCC................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
...............................................................................................................................................................................................................................................................................................AACATGCATGTTGG-GCCACCAAA-C--------ACC..................................................................................................................................................................................2711.0011000000
...................................................................................................................................................................................................................................................................................................TGCATGTTGG-GCCACCAAA-C--------ACCA-------------------------------------............................................................................................................................................2411.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGTACGGTGCTC.....................................2011.0010001000
.................................................................................................................................................................................................................................................................A--ACCTGTGATCGAAAC-CCA...............................................................................................................................................................................................................................1911.0010000010
..................................................................................................................................................................................................................................................AAT---------CATA--ACCTGTGATCGA......................................................................................................................................................................................................................................1911.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAA---CAGCAGCAGCAGTACGGT.........................................2511.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAA---CAGCAGCAGCAGT..............................................2090.1110100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAGCAGCAA---CAGCAGCA...................................................22110.0910001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA---CAGCAGCAGCAGT..............................................18190.0511000000

Generated: 05/19/2015 at 09:18 PM