ID:

dvi_18995

 Coordinate:

scaffold_13049:8460789-8460939 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ12156-cds]; exon [dvir_GLEANR_12144:2]; intron [Dvir\GJ12156-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGCGCTGGTGTCTTGGCTTCCATTCCGCACGGACTCTATGCCAAGGCTCTGTAAGTTCACATTCTATGCCCGAGTGGTGCAGGGAGGCTTGGGGGCGGACTTGGCAAAGTTACAGCTTTGCCGGCTGCCATTGATGAATGTCTCGAACAGCGGACACATAACATACGTCAACCATGTTGACGATGTGCGCGATATCGCGGCGATCTCGTGCGCGAAATACAAATTTGTTGTCTATCAGCAAGGGAAATACC
**************************************************.......(((((......(((((((...........)))))))(((((.((.((((((((....))))))))))))))).........((((.((.....)))))).........(((((((...))))))))))))((((....))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 SRR060672
9x160_females_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060677
Argx9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 GSM1528803
follicle cells		 SRR060684
140x9_0-2h_embryos_total
 M061
embryo
 SRR060668
160x9_males_carcasses_total
 V047
embryo
 SRR060662
9x160_0-2h_embryos_total
 SRR060679
140x9_testes_total
 M028
head
 SRR060670
9_testes_total
 SRR1106729
mixed whole adult body
 SRR060663
160_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 M027
male body		 SRR060658
140_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060657
140_testes_total
 V053
head
 SRR060671
9x160_males_carcasses_total
 SRR060660
Argentina_ovaries_total
 SRR060669
160x9_females_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060678
9x140_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
...............................................................CTATGGCCGAGTGGTTAAG......................................................................................................................................................................... 19 3 20 60.50 1210 1096 4 10 4 0 7 22 0 6 0 5 0 8 0 1 0 0 3 5 11 10 7 3 0 0 2 2 2 0 0 1 1
...............................................................CTATGGCCGAGTGGTTAAGG........................................................................................................................................................................ 20 3 12 14.92 179 145 2 1 0 0 5 1 0 1 1 0 0 8 2 0 0 0 9 3 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................CTATGCCCGAGTGGTTAAG......................................................................................................................................................................... 19 2 2 2.50 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TCCATTCCGCACGGACTCTAT.................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CTTCCATTCCGCACGGACTCTAT.................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CTATGCCCGAGTGGTTAAGG........................................................................................................................................................................ 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AGGCGTTCTCGTGCGAGAAA.................................. 20 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................GCCCGATTGGTGCAGGGAGGCTTGGGGGC........................................................................................................................................................... 29 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................ATTCCGCACGGACTCTATGC.................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TTGGCTTCCATTCCGCACGGA.......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CTATGGCCGAGTGGTTCAG......................................................................................................................................................................... 19 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GTCTTGGCTTCCATTCCGCACGGA.......................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GCGCTGGTGTCTTGGCTTCC...................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GTCTTGGCTTCCATTCCGCACGGACT........................................................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................ATTGATGATTGTCTCGAACAGCGGACAC.............................................................................................. 28 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TTGGCTTCCATTCCGCACG............................................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TCCGCACGGACTCTATGCCAAGG............................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................ATTGGTGCAGGGAGGCTTGGGGGCGG......................................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TCCATTCCGCACGGACTC....................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................CCTTCGATGCCCGAGTGGT............................................................................................................................................................................. 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TATGACCGAGTGGTTCAGG........................................................................................................................................................................ 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GGCGTTCTCGTGCGAGAAA.................................. 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATCGCGGCGATCTCGTGCGC...................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TTGATGATTGTCTCGAACAGCGGACAC.............................................................................................. 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GCTTCCATTCCGCACGGACT........................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........CTTGGCTTCCATTCCGCACGGACTC....................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CTATGCCCGATTGGTGCAGGGAGGCT.................................................................................................................................................................. 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TTCCGCACGGACTCTATGCC................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CTATGGCCGAGTGGTCAAG......................................................................................................................................................................... 19 3 10 0.50 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................ATACCGCGCCGATCTCGTG......................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CTATGCCCCAGAGGTGCA.......................................................................................................................................................................... 18 2 4 0.50 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CGCTATTCCAAGGTTCTGTAA..................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................ACTATGCCCGAGTGGTTAAGG........................................................................................................................................................................ 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CGAGTGGTCCAGGGAGGCA.................................................................................................................................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................ACCTTCTGTGCCCGAGTTGT............................................................................................................................................................................. 20 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................CGGACCCTCTCCCAAGGCT........................................................................................................................................................................................................... 19 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CAGCGAGGCTGGGGTGCGGA........................................................................................................................................................ 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CGAGTGGTCTAGGGAGGCA.................................................................................................................................................................. 19 3 9 0.22 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................CCTTCGGTGCCCGAGTGGT............................................................................................................................................................................. 19 3 14 0.21 3 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................TAGGGGACGGACTTGGCAGA............................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CATGGGGACGGACTTGGCAG................................................................................................................................................ 20 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TATGGCCGAGTGGTTGAGG........................................................................................................................................................................ 19 3 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CGAGTGGTCTAAGGAGGCT.................................................................................................................................................................. 19 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................TGTGGCGCAGGGAGGTTTGG............................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................CATTGATGAATATCTGGAA........................................................................................................ 19 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................TATGGCCGAGTGGTAAAGG........................................................................................................................................................................ 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................ATGCCCGAGTGGTTAAGG........................................................................................................................................................................ 18 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AGGCGTTCTCGTGCGAGAA................................... 19 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................ACTATGGCCGAGTGGTGAA.......................................................................................................................................................................... 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................CCATAGCTGTATGTCTCGA......................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................CTATGGCCGAGTGGTAAAG......................................................................................................................................................................... 19 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................CCGAGTGGTCTAAGGAGGC................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TCTATGTCCGAGTGGTTAA.......................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TCTATGGCCGAGTGGTTAA.......................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................GAGTGGCGTAGGGAGGAT.................................................................................................................................................................. 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCGCGACCACAGAACCGAAGGTAAGGCGTGCCTGAGATACGGTTCCGAGACATTCAAGTGTAAGATACGGGCTCACCACGTCCCTCCGAACCCCCGCCTGAACCGTTTCAATGTCGAAACGGCCGACGGTAACTACTTACAGAGCTTGTCGCCTGTGTATTGTATGCAGTTGGTACAACTGCTACACGCGCTATAGCGCCGCTAGAGCACGCGCTTTATGTTTAAACAACAGATAGTCGTTCCCTTTATGG
**************************************************.......(((((......(((((((...........)))))))(((((.((.((((((((....))))))))))))))).........((((.((.....)))))).........(((((((...))))))))))))((((....))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
...............................................................................................................................................................TTGTATGGAGTGGGTACA.......................................................................... 18 2 3 0.33 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:8460739-8460989 - dvi_18995 GGCGCTGGTGTCTTGGCTTCCATTCCGCACGGACTCTATGCCAAGGCTCTGTAAGTT-CA-CATTCTA----------------------------------------------------------------TGC----C--CGAGTGGTGCA-------------------------------------------------------------------------GGGAGGCT--------------TGGGGGC----------------------GGACTTGGCAAAGTTACAGCT--TTGCCGG----CTGCCATTGATGAATGTCTCGAACAGCGGACACATA-----ACATA-------CGTCAACCATGTTG------------------------A--CGAT-G-T--------GCGCGATATCGCGGCGATCTCGTGCGCGAAATACAAAT--------------------------TTGTTGTCTATCAGCAAGGGAAATACC
droMoj3 scaffold_6680:12108011-12108224 - GGCGCTGGTGTATTGGCTTCCATTCCTCACGGGCTCTATGCCAAGGCTCTGTAAGTT-TA-C--------------------------------------------------------------------------ATCG---TAGATAGGAAT------A-----------------------------------------------------------------GGTCTGACTAGGGGTGAAGTCATGCGGGCACA------------------TGCACTTGGCAACTTTACAGCTATTTGCCGG----CTGCCATTGATGAA-----TG----TCTTAAACG-----------------------TTGTTGACG--------------------------------------ATGAC--GGCGATATCGCTGCGATCTCGTGCGCGAAATACAAA------------------------------------------------------
droGri2 scaffold_15110:7485273-7485493 - GGCGCTGGTGTATTGGCTTCCATTCCGCACCGACTCTATGCCAAGGCTCTGTAAGTT-TA-CTTATTT----------------------------------------------------------------TTA----T--TTATATGTGTA-------------------------------------------------------------------------CATCTATT----------------------G--GGGGGTTCA------TTTGCACTTGGCAGC--------A--CTGCAGC----ATGCCATTGATTAG-----TGT--------TATT-------------------TGTCTTGTC---------------------------------------------------TGAGATCGCGCCGATCTCGTGCGCGAAATGCACAAATAGTTGAATGCTTTCGTACCAGTCGTAAATGCC-------------------
droWil2 scf2_1100000004729:2378094-2378293 + GGTGCTGGCGTTTTGGCTTCCATTCCCCACGGACTCTATGCCAAGGCTCTGTAAGTT-TT-TTAACACATTTCTCTATTC-------------------------------------------TC----------TATCC--TT----------------------------------ACATA---------------------------------------TGTATG--------------------------CACATGCCGGTTGC------------------------------------CATTTTGGCGCCATTGATAAA---------TAGCTTACACGGATCTAGACA------------TCC----------------------------------------------------GACCATAACGTTGCAATCTCGTGCGCGAAACAAAAA-----------------------------------------------GTTTATT
dp5 XR_group8:721242-721467 - dps_3217 GGTGCTGGCGTCTTGGCCTCCATTCCCCATGGACTCTATGCCAAGGCTTTGTAAGTT-CCAT-A-------------TAGCACCTACCATTTATACAGTATGCATGCAGTATTTAGTATAGAATACATATATATA----C--AT----------------------------------ACATA---------------------------------------CATACA--------------------------TATATGCCGGTTTGTTCATCTAT------GGC----------------GCCGCCTGATTGCCATTGATGAA-----TG----GCTTACAC---------------------------------------------------------------------------------GATATCGCTGCGATCTCGTGCGCGAAATACGAA------------------------------------------------------
droPer2 scaffold_32:761793-762010 + GGTGCTGGCGTCTTGGCCTCCATTCCCCATGGACTCTATGCCAAGGCTTTGTAAGTT-CCAT-A-------------TAGCACCTACCATTTATACAGTATGCATGCAGTATTTAGTATAGAATA----------CAT--------------------------------------ATACATA---------------------------------------CATACA--------------------------TATATGCCGGTTTGTTCATCTAT------GGC----------------GCCGCCTGATTGCCATTGATGAA-----TG----GCTTACAC---------------------------------------------------------------------------------GATATCGCTGCGATCTCGTGCGCGAAATACGAA------------------------------------------------------
droAna3 scaffold_13337:13816122-13816179 + GGTGCTGGCGTTTTGGCTTCCATTCCTCACGGACTCTATGCCAAGGCCCTGTAAGTT-C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395832:757559-757616 + GGTGCTGGCGTTTTGGCTTCCATTCCTCACGGACTCTATGCCAAGGCCCTGTAAGTT-C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302486:605791-606102 - GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTATGTCAAGGCTCTGTAAGTT-CTACCTA----------------------------------------------------------TA----------A-GATCCGTACATATGTAC----TCAAAAC-------------ACATA-------------------------CTATATATGCATGGTGCTTA--------------------------TTTATGCCGGTTCC------TCT------GGC----------------GCCGT-----CGCCATTGATGAA-----CGAACCGCTTACACG-------------------GGACCTGTCTGCGGGTTAGACTGACTGGCAGTGGAGGCG--CTGG-G-GGAAAAGCGAGACGATATCGGTGCGATCTCGTGCGCGAAATACGAAAATAGTTTAGAGCTGCCGTGTCGTTTGTCGCTGTCTATCAGTTAAG-GTTTACT
droFic1 scf7180000453839:2187222-2187504 - GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTTCAAGGCTCTGTAAGTT-CAACCTC--------TGTATAC-------------------------------------------TA----------CATAC---TACATATGTACAAACATAAAATAT---------------A---------------------------------------TGTTTA--------------------------CTGATGCCGGTTCC------TCT------GGC----------------GCCGT-----CGCCACTGATGAA-----CAGACCGCTTACACG-------------------GGACCTGTCGATGG------------------------G--CAGGGG-GGCAAAGTGAGACGATATCGCCGCGATCTCGTGCGCGAAATACAAAAATAGCTCAAAGCTGTCGTGTCGTTTGTCGCTGTCTATCAGTTTAGGATCTACT
droEle1 scf7180000491255:3220220-3220437 - GGCGCTGGCGTCTTGGCTTCCATTCCTCATGGACTCTATTTCAAGGCTCTGTAAGTT-CCAACCA----------------------------------------------------------TA----------TATTT---TACATAGGTACTGCCATTAAATAT---------------A---------------------------------------TGTTTA--------------------------TTTATGCCGGTTCC------TCT------GGC----------------GCCGT-----CGCCATTGAGGAA-----TGAACTGCTCACACG-------------------GGACCTGTCGATGG------------------------G--CCGG-G-GGTATAGCGAAACGATATCGCCGCGATCTCGTGCGCGAAATAC---------------------------------------------------------
droRho1 scf7180000778301:90880-91105 - GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTATTTCAAGGCTCTGTAAGTT-CCACCTA----------------------------------------------------------TA----------CATATAAGTACATATGTAAAACCATTAAATAT---------------A---------------------------------------TGTTTA--------------------------TTTATGCCGGTTCC------TCT------GGC----------------GCCGT-----CGCCATTGAGGAA-----TGAACTGCTCACACG-------------------GGACCTGTCTATGG------------------------GGATGGG-G-GGTATAGCTAAACAATATCGCCGCAATCTCGTGCGCGAAATACGAA------------------------------------------------------
droBia1 scf7180000302428:3319562-3319826 + GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTATTTCAAGGCTCTGTAAGTT-TA-CCTATGT--------GTCG-------------------------------------------GA----------CA---------------GCAAGCTTAAAATAT---------------A---------------------------------------TGTTTA--------------------------TATATGCCGGTTCCT-----TCT------GGC----------------GCCGT-----CGCCATTGATGAT-----C-----GCTTACACG-------------------GGACCCGTCGATGG------------------------G-ACAGG-G-GGCGTAGCGAAACAATAGCGGGGCGATCTCGTGCGCGAAATACGAAAATAACTCAAAGCTGGCGTGTCGCTTGTCGCTGTCTATCAGTTAA-GATATACT
droTak1 scf7180000415352:573806-573863 + GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTATTTCAAGGCTCTGTAAGTT-C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409711:547640-547868 + GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTTTATTCCAAGGCTCTGTAAGTTATCACTAATTT----------------------------------------------------------------TTA--------------------AGTTTAAAATATATGTTAAATATATATA---------------------------------------CATTAA--------------------------CTTATGCCGGTTTC------TCT------GGC----------------GCCGT-----TGCCATTGATGAA-----CGAACCGCTTACACG-------------------GGACCTGTCGTTGG-ATA--------------------GGCCAGG-G-GGCTGAGAGAAACGATATCGCTGCGATCTCGTGCGCGAAATACGAA------------------------------------------------------
dm3 chr3L:16791962-16792194 - GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTCGAAGGCTCTGTAAGTA-TCACTAA----------------------------------------------------------TA----------TATTT------ATATATATAGATATA--G----CATCGAATATACATA---------------------------------------TGTTTA--------------------------TTTGTGCCGGTTCC------TCT------GGC----------------A-----------CCATTGATGAA-----CGAACTGCTTACACGGA-----AC---GAACACGGGACTTGTCGATGG------------------------G--CAGG-GTGAAATGACGGAGCAATATCGCCGCGATCTCGTGCGCGAAATACGAA------------------------------------------------------
droSim2 3l:16382796-16383024 - dsi_12592 GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTCCAAGGCACTGTAAGTA-TCACTAA----------------------------------------------------------TA----------TATAT---AACATCTATATAGATATA--G----TATCGAATATACATA---------------------------------------TGTTTA--------------------------TTTGTGCCGGTTCC------TCT------GGC----------------GCCGT-----CGCCATTGATGAA-----CGAACTGCTTACACGGA-----AC-------ACGGGACTTGTTGGTGG------------------------G--CAGG-G-GG--------AGCGATATCGCCGTGATCTCGTGCGCGAAATACGAA------------------------------------------------------
droSec2 scaffold_0:8863313-8863538 - GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTCCAAGGCACTGTAAGTA-TCACTAA----------------------------------------------------------TA----------TATAT---AACATATATATAGCTATA--GTAT---------------A---------------------------------------TGTTTA--------------------------CTTGTGCCGGTTCC------TCT------GGC----------------GCCGT-----CGCCATTGATGAA-----CGAACTGCTTACACGGA-----AC-------ACGGGACTTGTTGGTGG------------------------G--CAGG-G-GGCATGGCGGAGCGATATCGCCGCGATCTCGTGCGCGAAATACGAA------------------------------------------------------
droYak3 3L:17276163-17276410 + GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTTCAAGGCTCTGTAAGTT-CCCCAAA--------TG------------------------------------------------TA----------TATTG---TACATATGTATGTACATTAAA--------------------------AG-----------ATATAGTATAG------TGTGTTTA--------------------------TTTATGCCGGTTCC------TCT------GGC----------------GCCGT-----CGCCATTGATGAG-----CGAACTGCTTACACGGG-----ACATGGGGCACGGGACTAGTTGGTGG------------------------G--CCGG-G-GGTGTGGCGAAACGATATTGCCGCGATCTCGTGCGCGAAATACGAA------------------------------------------------------
droEre2 scaffold_4784:17041771-17042024 + GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTTCAAGGCTCTGTAAGTT-CC-CTCATAT----------------------------------------------------------------ATA----C------ATA----T------AGAAAG---------------TACATAACAAGTTGGGCATCGCATATCGTATAG------TGTGTTTA--------------------------TTTATGCCGGTTCC------TCT------GGC----------------GCCGT-----CGCCATTGATGAA-----CGAACTGCTTACACGGG-----ACATGGGGCACGGGACTTGTTGGTGG------------------------G--TCGG-G-GGTGTGGCGCAACAATATCGCCGCGATCTCGTGCGCGAAATCCGAA------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GGCGCTGGTGTCTTGGCTTCCATTCCGCACGGACTCTATGCCAAGGCTCTGTAAGTT-CA-CATTCTA----------------------------------------------------------------TGC----C--CGAGTGGTGCA-------------------------------------------------------------------------GGGAGGCT--------------TGGGGGC----------------------GGACTTGGCAAAGTTACAGCT--TTGCCGG----CTGCCATTGATGAATGTCTCGAACAGCGGACACATA-----ACATA-------CGTCAACCATGTTG------------------------A--CGAT-G-T--------GCGCGATATCGCGGCGATCTCGTGCGCGAAATACAAAT--------------------------TTGTTGTCTATCAGCAAGGGAAATACCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................TCCATTCCGCACGGACTCTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
................CTTCCATTCCGCACGGACTCTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.....................ATTCCGCACGGACTCTATGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
............TTGGCTTCCATTCCGCACGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........GTCTTGGCTTCCATTCCGCACGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000001
.GCGCTGGTGTCTTGGCTTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.........GTCTTGGCTTCCATTCCGCACGGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
............TTGGCTTCCATTCCGCACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......................TCCGCACGGACTCTATGCCAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..................TCCATTCCGCACGGACTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCGGCGATCTCGTGCGC................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
...............GCTTCCATTCCGCACGGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
...........CTTGGCTTCCATTCCGCACGGACTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000100000
......................TTCCGCACGGACTCTATGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
GGCGCTGGTGTATTGGCTTCCATTCCTCACGGGCTCTATGCCAAGGCTCTGTAAGTT-TA-C--------------------------------------------------------------------------ATCG---TAGATAGGAAT------A-----------------------------------------------------------------GGTCTGACTAGGGGTGAAGTCATGCGGGCACA------------------TGCACTTGGCAACTTTACAGCTATTTGCCGG----CTGCCATTGATGAA-----TG----TCTTAAACG-----------------------TTGTTGACG--------------------------------------ATGAC--GGCGATATCGCTGCGATCTCGTGCGCGAAATACAAA------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................ATTCCTCACGGGCTCTATGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.................TTCCATTCCTCACGGGCTCTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
....................................................................................................................................................................................................................................................................................TGCACTTGGCAACTTTACAGCTATTTGCC...............................................................................................................................................................................................................2911.001000010
.........GTATTGGCTTCCATTCCTCACGGGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.........GTATTGGCTTCCATTCCTCACGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droGri2
GGCGCTGGTGTATTGGCTTCCATTCCGCACCGACTCTATGCCAAGGCTCTGTAAGTT-TA-CTTATTT----------------------------------------------------------------TTA----T--TTATATGTGTA-------------------------------------------------------------------------CATCTATT----------------------G--GGGGGTTCA------TTTGCACTTGGCAGC--------A--CTGCAGC----ATGCCATTGATTAG-----TGT--------TATT-------------------TGTCTTGTC---------------------------------------------------TGAGATCGCGCCGATCTCGTGCGCGAAATGCACAAATAGTTGAATGCTTTCGTACCAGTCGTAAATGCC-------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GGTGCTGGCGTTTTGGCTTCCATTCCCCACGGACTCTATGCCAAGGCTCTGTAAGTT-TT-TTAACACATTTCTCTATTC-------------------------------------------TC----------TATCC--TT----------------------------------ACATA---------------------------------------TGTATG--------------------------CACATGCCGGTTGC------------------------------------CATTTTGGCGCCATTGATAAA---------TAGCTTACACGGATCTAGACA------------TCC----------------------------------------------------GACCATAACGTTGCAATCTCGTGCGCGAAACAAAAA-----------------------------------------------GTTTATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................CCCCACGGACTCTATGCCAAGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000
..................................................................................................................................................................................................................................................................................................................................................TTACACGGATCTAGACA------------TCC----------------------------------------------------..........................................................................................2011.00110000
.................................................................................................................................................................................................................................................................................................................................................CTTACACGGATCTAGACA------------TC...............................................................................................................................................2011.00100010
......................TTCCCCACGGACTCTATGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...................CCATTCCCCACGGACTCTATGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
.......................TCCCCACGGACTCTATGCCAAGGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.....................ATTCCCCACGGACTCTATGCCAAGGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00101000
......................TTCCCCACGGACTCTATGCCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
dp5
GGTGCTGGCGTCTTGGCCTCCATTCCCCATGGACTCTATGCCAAGGCTTTGTAAGTT-CCAT-A-------------TAGCACCTACCATTTATACAGTATGCATGCAGTATTTAGTATAGAATACATATATATA----C--AT----------------------------------ACATA---------------------------------------CATACA--------------------------TATATGCCGGTTTGTTCATCTAT------GGC----------------GCCGCCTGATTGCCATTGATGAA-----TG----GCTTACAC---------------------------------------------------------------------------------GATATCGCTGCGATCTCGTGCGCGAAATACGAA------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................ATTCCCCATGGACTCTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCTGCGATCTCGTGCGC................................................................2011.0010100000000
...............................GACTCTATGCCAAGGCTTTGTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...........................CATGGACTCTATGCCAAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................GACTCTATGCCAAGGCTTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000000
...................CCATTCCCCATGGACTCTATGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
droPer2
GGTGCTGGCGTCTTGGCCTCCATTCCCCATGGACTCTATGCCAAGGCTTTGTAAGTT-CCAT-A-------------TAGCACCTACCATTTATACAGTATGCATGCAGTATTTAGTATAGAATA----------CAT--------------------------------------ATACATA---------------------------------------CATACA--------------------------TATATGCCGGTTTGTTCATCTAT------GGC----------------GCCGCCTGATTGCCATTGATGAA-----TG----GCTTACAC---------------------------------------------------------------------------------GATATCGCTGCGATCTCGTGCGCGAAATACGAA------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................GGACTCTATGCCAAGGCTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droAna3
GGTGCTGGCGTTTTGGCTTCCATTCCTCACGGACTCTATGCCAAGGCCCTGTAAGTT-C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................CACGGACTCTATGCCAAGGCCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000002
.GTGCTGGCGTTTTGGCTTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000002
.....................ATTCCTCACGGACTCTATGCCAAGGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.GTGCTGGCGTTTTGGCTTCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
................CTTCCATTCCTCACGGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droBip1
GGTGCTGGCGTTTTGGCTTCCATTCCTCACGGACTCTATGCCAAGGCCCTGTAAGTT-C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTATGTCAAGGCTCTGTAAGTT-CTACCTA----------------------------------------------------------TA----------A-GATCCGTACATATGTAC----TCAAAAC-------------ACATA-------------------------CTATATATGCATGGTGCTTA--------------------------TTTATGCCGGTTCC------TCT------GGC----------------GCCGT-----CGCCATTGATGAA-----CGAACCGCTTACACG-------------------GGACCTGTCTGCGGGTTAGACTGACTGGCAGTGGAGGCG--CTGG-G-GGAAAAGCGAGACGATATCGGTGCGATCTCGTGCGCGAAATACGAAAATAGTTTAGAGCTGCCGTGTCGTTTGTCGCTGTCTATCAGTTAAG-GTTTACTSizeHit CountTotal NormTotal
No Reads
droFic1
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTTCAAGGCTCTGTAAGTT-CAACCTC--------TGTATAC-------------------------------------------TA----------CATAC---TACATATGTACAAACATAAAATAT---------------A---------------------------------------TGTTTA--------------------------CTGATGCCGGTTCC------TCT------GGC----------------GCCGT-----CGCCACTGATGAA-----CAGACCGCTTACACG-------------------GGACCTGTCGATGG------------------------G--CAGGGG-GGCAAAGTGAGACGATATCGCCGCGATCTCGTGCGCGAAATACAAAAATAGCTCAAAGCTGTCGTGTCGTTTGTCGCTGTCTATCAGTTTAGGATCTACTSizeHit CountTotal NormTotal
No Reads
droEle1
GGCGCTGGCGTCTTGGCTTCCATTCCTCATGGACTCTATTTCAAGGCTCTGTAAGTT-CCAACCA----------------------------------------------------------TA----------TATTT---TACATAGGTACTGCCATTAAATAT---------------A---------------------------------------TGTTTA--------------------------TTTATGCCGGTTCC------TCT------GGC----------------GCCGT-----CGCCATTGAGGAA-----TGAACTGCTCACACG-------------------GGACCTGTCGATGG------------------------G--CCGG-G-GGTATAGCGAAACGATATCGCCGCGATCTCGTGCGCGAAATAC---------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTATTTCAAGGCTCTGTAAGTT-CCACCTA----------------------------------------------------------TA----------CATATAAGTACATATGTAAAACCATTAAATAT---------------A---------------------------------------TGTTTA--------------------------TTTATGCCGGTTCC------TCT------GGC----------------GCCGT-----CGCCATTGAGGAA-----TGAACTGCTCACACG-------------------GGACCTGTCTATGG------------------------GGATGGG-G-GGTATAGCTAAACAATATCGCCGCAATCTCGTGCGCGAAATACGAA------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTATTTCAAGGCTCTGTAAGTT-TA-CCTATGT--------GTCG-------------------------------------------GA----------CA---------------GCAAGCTTAAAATAT---------------A---------------------------------------TGTTTA--------------------------TATATGCCGGTTCCT-----TCT------GGC----------------GCCGT-----CGCCATTGATGAT-----C-----GCTTACACG-------------------GGACCCGTCGATGG------------------------G-ACAGG-G-GGCGTAGCGAAACAATAGCGGGGCGATCTCGTGCGCGAAATACGAAAATAACTCAAAGCTGGCGTGTCGCTTGTCGCTGTCTATCAGTTAA-GATATACTSizeHit CountTotal NormTotal
No Reads
droTak1
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTATTTCAAGGCTCTGTAAGTT-C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTTTATTCCAAGGCTCTGTAAGTTATCACTAATTT----------------------------------------------------------------TTA--------------------AGTTTAAAATATATGTTAAATATATATA---------------------------------------CATTAA--------------------------CTTATGCCGGTTTC------TCT------GGC----------------GCCGT-----TGCCATTGATGAA-----CGAACCGCTTACACG-------------------GGACCTGTCGTTGG-ATA--------------------GGCCAGG-G-GGCTGAGAGAAACGATATCGCTGCGATCTCGTGCGCGAAATACGAA------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTCGAAGGCTCTGTAAGTA-TCACTAA----------------------------------------------------------TA----------TATTT------ATATATATAGATATA--G----CATCGAATATACATA---------------------------------------TGTTTA--------------------------TTTGTGCCGGTTCC------TCT------GGC----------------A-----------CCATTGATGAA-----CGAACTGCTTACACGGA-----AC---GAACACGGGACTTGTCGATGG------------------------G--CAGG-GTGAAATGACGGAGCAATATCGCCGCGATCTCGTGCGCGAAATACGAA------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................ACGGACTCTACTCGAAGGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
................................ACTCTACTCGAAGGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CGGACTCTACTCGAAGGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TCACGGACTCTACTCGAAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GCTTCCATTCCTCACGGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................A-----------CCATTGATGAA-----CGAACTGCT.............................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................TCCTCACGGACTCTACTCGAAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GGCGCTGGCGTCTTGGCTTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TCGAAGGCTCTGTAAGTA-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................CCATTGATGAA-----CGAACTGCTTACACGGA-----................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................ACGGACTCTACTCGAAGGCTCTTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ATTCCTCACGGACTCTACTCGAAGGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TCTTGGCTTCCATTCCTCACGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................CGGGACTTGTCGATGG------------------------G--CAGG-GG....................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............TGGCTTCCATTCCTCACGGACTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CTCACGGACTCTACTCGAAGGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................TTCCTCACGGACTCTACTCGAAGGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........................CTCACGGACTCTACTCGAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GGACTCTACTCGAAGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
......................TTCCTCACGGACTCTACTCGAAGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................TCCATTCCTCACGGACTCTACTCGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGATCTCGTGCGCGAA.............................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................CTCTGTAAGTA-TCACTAA----------------------------------------------------------TA----------TAT......................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GCTGGCGTCTTGGCTTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GACTCTACTCGAAGGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CACGGACTCTACTCGAAGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TATA--G----CATCGAATATACATA---------------------------------------..................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................ATA--G----CATCGAATATACATA---------------------------------------TG................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
...GCTGGCGTCTTGGCTTCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................ACGGGACTTGTCGATGG------------------------G--CAGT-T.....................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
...........CTTGGCTTCCATTCCTCACGGACTCTACTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGGCTTCCATTCCTCACGGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TCCTCACGGACTCTACTCGAAGGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TTCCATTCCTCACGGACTCTACTCGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGGCGTCTTGGCTTCCATTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CTCACGGACTCTACTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CTCTACTCGAAGGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CTGGCGTCTTGGCTTCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................CCATTCCTCACGGACTCTACTCGAAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................ACTAA----------------------------------------------------------TA----------TATTT------ATATATA.......................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................TAA----------------------------------------------------------TA----------TATTT------ATATATATA.....................................................................................................................................................................................................................................................................................................................................................................1980.3830000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................CTAA----------------------------------------------------------TA----------TATTT------ATATATATA.....................................................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................AA----------------------------------------------------------TA----------TATTT------ATATATATA.....................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................CTTACACGGA-----AC---GAACTTC....................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTCCAAGGCACTGTAAGTA-TCACTAA----------------------------------------------------------TA----------TATAT---AACATCTATATAGATATA--G----TATCGAATATACATA---------------------------------------TGTTTA--------------------------TTTGTGCCGGTTCC------TCT------GGC----------------GCCGT-----CGCCATTGATGAA-----CGAACTGCTTACACGGA-----AC-------ACGGGACTTGTTGGTGG------------------------G--CAGG-G-GG--------AGCGATATCGCCGTGATCTCGTGCGCGAAATACGAA------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................ATTCCTCACGGACTCTACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00202000000000000000
...................CCATTCCTCACGGACTCTACTCCAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
.....................ATTCCTCACGGACTCTACTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.................TTCCATTCCTCACGGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.............................CGGACTCTACTCCAAGGCACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.........GTCTTGGCTTCCATTCCTCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
..................TCCATTCCTCACGGACTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.........................CTCACGGACTCTACTCCAAGGCACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
.........................................CAAGGCACTGTAAGTA-TCACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
...................CCATTCCTCACGGACTCTACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
................CTTCCATTCCTCACGGACTCTACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
droSec2
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTCCAAGGCACTGTAAGTA-TCACTAA----------------------------------------------------------TA----------TATAT---AACATATATATAGCTATA--GTAT---------------A---------------------------------------TGTTTA--------------------------CTTGTGCCGGTTCC------TCT------GGC----------------GCCGT-----CGCCATTGATGAA-----CGAACTGCTTACACGGA-----AC-------ACGGGACTTGTTGGTGG------------------------G--CAGG-G-GGCATGGCGGAGCGATATCGCCGCGATCTCGTGCGCGAAATACGAA------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGATATCGCCGCGATCTCGTG...................................................................2111.0011000
droYak3
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTTCAAGGCTCTGTAAGTT-CCCCAAA--------TG------------------------------------------------TA----------TATTG---TACATATGTATGTACATTAAA--------------------------AG-----------ATATAGTATAG------TGTGTTTA--------------------------TTTATGCCGGTTCC------TCT------GGC----------------GCCGT-----CGCCATTGATGAG-----CGAACTGCTTACACGGG-----ACATGGGGCACGGGACTAGTTGGTGG------------------------G--CCGG-G-GGTGTGGCGAAACGATATTGCCGCGATCTCGTGCGCGAAATACGAA------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...GCTGGCGTCTTGGCTTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.................TTCCATTCCTCACGGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
.............................CGGACTCTACTTCAAGGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000
...........................................................................................................................................................................................................................................................................................................................CATTGATGAG-----CGAACTGCTT............................................................................................................................................................................2011.00100000010000
GGCGCTGGCGTCTTGGCTTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.......................TCCTCACGGACTCTACTTCAAGGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
droEre2
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTTCAAGGCTCTGTAAGTT-CC-CTCATAT----------------------------------------------------------------ATA----C------ATA----T------AGAAAG---------------TACATAACAAGTTGGGCATCGCATATCGTATAG------TGTGTTTA--------------------------TTTATGCCGGTTCC------TCT------GGC----------------GCCGT-----CGCCATTGATGAA-----CGAACTGCTTACACGGG-----ACATGGGGCACGGGACTTGTTGGTGG------------------------G--TCGG-G-GGTGTGGCGCAACAATATCGCCGCGATCTCGTGCGCGAAATCCGAA------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAATATCGCCGCGATCTCGT....................................................................2411.0010000100
.........GTCTTGGCTTCCATTCCTCACGGACTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000
...GCTGGCGTCTTGGCTTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010

Generated: 05/19/2015 at 09:15 PM