ID:

dvi_1895

 Coordinate:

scaffold_12726:1116752-1116902 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

0.7 0.8 1.0

Flybase annnotation

exon [dvir_GLEANR_15565:4]; CDS [Dvir\GJ15244-cds]; intron [Dvir\GJ15244-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACAGCAGCAGCAGCAGCAGCAACAGCAGCCGGCTAATTCGGAATCTGCAGGTGCGCTTAACAATGTTGGGCAGTCAGTTGTTGATTCAGTCACAGATTCAGTCATCACCAACTCCACTATCACCACAACCACAACCACTTCCAATACCAACAACATCACCACAAACACCTCCACATCCAACACTAGCTACGGCACCAATTTAGGCTCAAACAGCAGCCATATAGTGCAACATAATATTGCCACAGTCAGCA
**********************************************************************************************.................................................................................**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060686
Argx9_0-2h_embryos_total
 V047
embryo
 M028
head
 M061
embryo
 SRR060666
160_males_carcasses_total
 SRR060687
9_0-2h_embryos_total
 SRR060679
140x9_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060689
160x9_testes_total
 SRR1106729
mixed whole adult body
 SRR060667
160_females_carcasses_total
 V053
head
.....................ACAGCAGCCGGCTAATTCGGA................................................................................................................................................................................................................. 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GCAACAGCAGCCGGCTAATT..................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TCGGAATCTGCAGGTGCGCT.................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................ACATCACCACAAACACCTCCACA............................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CAGCCGGCTAATTCGGAAT............................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................GATTCAGTCATCACCAACTC......................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AACTCCAGTGTCACCACAA........................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AGCAACAGCAGCCAGCTAATTCGGAATC.............................................................................................................................................................................................................. 28 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................GTTGTTGAATCAGTGACAGGT.......................................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................TTCCAATACCAACAACATCA............................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................CAATGTTGGGCAGTCAGTT............................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................AGCCAGCTAATTCGGAATCTGCAGG........................................................................................................................................................................................................ 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................CCAACTCCAGTGTCACCAC............................................................................................................................. 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................CTGCAGGTGCGCTTAACAATGTTGGGC.................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................AACAGCAGCCGGCTAATTCG................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................ACCACAACCACTTCCAATACC....................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................AACACTACCTACGCCACCA...................................................... 19 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TGTTGGGCAGTCAGTTGTTGATTCA................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CAACATAATATTGCCACAGTCAGC. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................AACCACAACCACTTCCAATAC........................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGCCATATAGTGCAACATAATA............... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................AAACACCTCCACATCCAACACT................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................GGCTAATTCGGAATCTGCAG......................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TCACAGATTCAGTCATTTCC.............................................................................................................................................. 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................GATTCAGTCACAGAT.......................................................................................................................................................... 15 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........GCAGCAGCAGCAACAGCAGCCGG........................................................................................................................................................................................................................... 23 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................ACATAATATTACCGCAGTC.... 19 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................AACACTAGCTACGCTACCA...................................................... 19 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GCAACAGCAGCCAGCTAAT...................................................................................................................................................................................................................... 19 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...GCAGCAGCAGCAGCAGCAAC.................................................................................................................................................................................................................................... 20 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TCGGAATCTGCTGGTGTGCG.................................................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...........AGCAGGAGCAACAGCAGCCGGC.......................................................................................................................................................................................................................... 22 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............GCAGCAGCAACAGCAGCCGG........................................................................................................................................................................................................................... 20 0 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CTTACAAGACCAAGAACAT............................................................................................... 19 3 20 0.10 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........AGCAGCAGCAGCAACAGCA................................................................................................................................................................................................................................ 19 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
....................................................................GGCGGTGATTTGTTGATTCA................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................AACACTAGTTACGCTACCA...................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CAGCAGCAGCAGCAGCAACAGCA................................................................................................................................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGTCGTCGTCGTCGTCGTCGTTGTCGTCGGCCGATTAAGCCTTAGACGTCCACGCGAATTGTTACAACCCGTCAGTCAACAACTAAGTCAGTGTCTAAGTCAGTAGTGGTTGAGGTGATAGTGGTGTTGGTGTTGGTGAAGGTTATGGTTGTTGTAGTGGTGTTTGTGGAGGTGTAGGTTGTGATCGATGCCGTGGTTAAATCCGAGTTTGTCGTCGGTATATCACGTTGTATTATAACGGTGTCAGTCGT
****************************************************************************.................................................................................********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR060654
160x9_ovaries_total
 SRR060673
9_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 V047
embryo
 SRR060672
9x160_females_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR060689
160x9_testes_total
 SRR060665
9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060680
 9xArg_testes_total
 M047
female body
 M061
embryo
 V116
male body
..........................................TAGGCGTCCACGCGAATAGAT............................................................................................................................................................................................ 21 3 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TAGGTTATGATCGATGGCG.......................................................... 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CCACTGGAATTGTTACAAGCC..................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................AGGCGTCCACGCGAATAGAT............................................................................................................................................................................................ 20 3 3 0.67 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0
..........................................CAGACGTCCACGCGAATAGAT............................................................................................................................................................................................ 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GGTGTTGGTGAAGGTTGT......................................................................................................... 18 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CCGCGCGAATTGCTACAACAC..................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TATGGTTGTCGTAGTGGT.......................................................................................... 18 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................CACTATTGGTTGATGTGATA................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................TCTAGGTTATGATCGATGGC........................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................CGTTATGGTTGTCGTAGTGGT.......................................................................................... 21 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................GTAGTAGTGTTTGTGAAG................................................................................ 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................GTTGTTGGTGAAGGTTGTGGA...................................................................................................... 21 3 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................GTTGTCGTCGGACCATTA...................................................................................................................................................................................................................... 18 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................TTGTCGTAGGTATATCAA......................... 18 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................TCTGTAGTGGTTGACGGGA..................................................................................................................................... 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................AGGTTGTGAGCGACGCCCT......................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................CGTTATGGTTGTCGTAGTG............................................................................................ 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................................................TCAGTGGTGGTTGACGTAA..................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................GTTGGTGTTGGTGTTGGTTA.......................................................................................................... 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................CGATTAAGCCTTAGCCTTG......................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12726:1116702-1116952 - dvi_1895 ACAG---CA-----GCAGCAGCAGCAGCAACAGCAGC--------C---GG-----CTAA---T-----TCGGAATCTG---CAGGTGC-GCTT-AACAATGT-----TGGGCAGTCAGTTGTTGATTC---------A------------------------------------------------------------------G------------------TCACAGATTCAGTCATCACCAA------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCACTATCACCACAACCACAACCACTTCCAATACCAACAACA-----------------------------------------------------------------------------------------------------------------------TCACCACAAAC-----ACCTCCACATCCAA------------CA---CTAGCTA---CGGCA---C---------------------------------------------------------------------------------------------------------------------------CAATTTAGGCTCAAACAGCAGCCATATAGTGCAACATAATATTGCCACAG----------------------------------------------------------------TCA---------------------------------------GCA
droMoj3 scaffold_6473:9047997-9048269 + CCAA---CA-----GCAGCAGCAGCAGCAGCAA-----------------G-----TGAA---C-----TCGGAATCTG---CAGGTGC-GCTT-AACACTGT-----TGGGCAGTCAGTTGTTGATTC---------A------------------------------------------------------------------G------------------TCACAGATTCAGTCATCAGCAA-----------------------------------CTCCACTGTTACCACAA---------C----------------------------------------CACAAAC--ATAA----------------------------------------------------------------CCACTTCCAATACCAACAACA------------TCTCCACCACCAACA-----------------------------------------CCATCAAC-----------------------------------------------------------ACCTCCATATCCAC------------CA---CCA---------------C-------------------C-------------------------------------------------------------AC-C---AACAACAACAACACC---------------A---CCAATTTAGGCTCAAGCAATAGCCATCTAGTGCAACATAATATTGCCGCAGTCA---------------------------------------------------------------------------------------------------------A
droGri2 scaffold_15110:11890700-11890948 + dgr_323 ACAG---CA-----GCAGCAGCAACAGCAGAAGCAGC--------A---TG-----CACA---G-----CAGC-----------------------------------------------------------------------------------------------------------------------------A---ACAGCAGCTGCAGCAGCATCATGCCCAGCAGC-------A-----------------ACAT--------------------------------------------------------------------------------------------------------GCGGCTGCCATTGCA-GCA---------------GCACAA----------------------------------------------------------CAGCAACTCCAGCAGCAGCAACAGCAGCACTCACATCA-----------CGCCACGC-------------------------------------ACCAAC----------------ATGCACA------------------------TCAGCAACAGCA---GCAGC--------------------------------------------------------------------------------AG-CAACAACAACAGCA---GC---------------A---G-------------------------------------CA---------------------------------------G---------------------------------CAGCAGCATCCTCATCATTCACTTGGACACAATCCGCACTTGCATCC
droWil2 scf2_1100000004902:4755250-4755471 - ACAA---CA-----ACAACAGCAGCAGCAACAACAACAACAAC--------AG---CTGC---A-----T---------------------CAC-AATAGTAA-----CACGAATACCAATA-CGAATT---------GCCACC------ACAGTCATCA---------------------------------GCAGCAA---CAC---C------------------------------------------------------------------------------------------------AACAACAACAACAACAACAAC---------------------AACAACAACAGCAACAA----------------------------------------------------------------------------------------------------CAACAACA-----------------------------------------C-------------------------------------------------------ATGAGCTC---------C-CCGCAA------------CA---TCAGCAA---CAA------------------------------------------------------------------------------------------T---ACCAACA---ACAACACCAAATATTACACGA---ACAA--------------------------------------TTG--------------------------CC------A---------------------------------CATCA---------------------------------------TCA
dp5 XR_group8:4943235-4943468 + ACAC---CA-----CCAGCAACAGTTGCAACAGCAGCAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------CATCACTA---------C------------------------------------------CAGCAACAACA----------------------------------------------------------------GCAGCTGCAACACCAACAACAGCAGCAGCAGCAGCAGCAGCTGCAACACCAACAGCAGCAACAACAACACTTTCT--ACA-----------------------------------------------------------------------------------------------------------------ACAGCA---GCAGCAACAGACACTGCCACCGCCACCCATACAACATCAGCAATACAATACAGCGGCCATAACGCCCAC------------------------------------------------ATACCAACAGTTA--------------------------------------CAA--------------------------CA------A---------------------------------CAACA---------------------------------------GCA
droPer2 scaffold_2:5826713-5826951 - ACTG---CA-----GCAACAGCCACAGCCACTGCC--------ACTG-CAA-----CAAA---T-----GTGACGTCGA---CAAGTGCTGATA-AAATGCAAATGCA-AATGAA------------GCA------------ACGCCAGCA------GAA---------------------------------GCA---GCAGCAG-------------------------------------CAA-----------------------------------CAG------------------------------------------C---------------------AGCAGAAACAGCAGCAGCAGCAACA------GC----------------------------------------------------------AGCAACAACAGCAACAGCAGCAACAGCAGCAACA-----------------------------------------GCAACAGCAGC-----------------------------------------------------------------------------------A---ACAGCAACAGCA---GCAGC--------------------------------------------------------------------------------AG-C---AACAACAGCA---ACAGC------------A---ACAA--------------------------------------CAG--------------------------CA------A---------------------------------CAGCA---------------------------------------GCA
droAna3 scaffold_13315:1204-1446 + ACAA---CA-----GCAGCAGCAGCAGCAACAACAACA--------------------------------------------------------------------------------------------------------------GCT------TGT---------------------------------GCA---GCAGCAG---------C------------------------------------------------------------------------------------AAATGTTGCAACAACAACAGCAGCAACCGATTATGCCGCAGCAACAGCAACGAATGCAAATGCAG------------------------------------------------CCGCAAC----------------------------------------------------C--------------------------------ACAGCAAATAGTTGTCAACCAGC------------------AGATC-------------------ATAAGCGA---------T-------CCTCAACGGCTGCAATATTTGCAG---CAGCA---GC---AGAT-------TATTC-------------------------------------------------------------AG-A---AACAACAGCA---GC---------------A---G-------------------------------------CAACAGCTTGTGGGAGCG---------------CA------G---------------------------------CAGCA---------------------------------------GCA
droBip1 scf7180000396589:2060793-2061044 - ACAA---CA-----GCAACAACCTCAGCAAATGCAGC--------CGCAAGGCAAGACATTCAT-----TATCAGCCAG---C---AGC-ACT---------------------------------------------------------T------CAATCA-----------GCTCAG----C--------G-------TCCAGCAACAGCAGCAGATTCTGGCCCAGAATCCGC-AAAACCAAAACGTCTATGTTGTGAATCAG--ACCAATCTAGCTCA------GC---------A------GCAACAGCAGCAACAACAAC---------------------AACAGCAGCTCGTGCAGCAGCAACAAATGTTGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---AGCAGCA---GCAACAGCC---------------G--------------------------------------ATAATGCC--------------------------------A---------------------------------CAGCA---------------------------------------GCA
droKik1 scf7180000302313:237292-237509 - A--G---CAG--CAGCAGCAGCAACAGCAACAGCAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------GC------------AGCAGCAGCATCT---------------------------------------------------------------------TC---------AGCAGGAGCAGCAACAACATCTGCA------------------------------------GCAG----------------------------------------------------------------------------------------------------CTGCATCA-----------------------------------------CCACGCGCACCACCACCTGCCTCAGCCATTGCATACCACCAGCCA------TCACCACAG-CG-CGCATCCCCACCTACAG------------CA------GCAGCAGCA---GCAG---------------C-----------------------------------------------------------------AG-CAACAGCAGCAACA---GC---------------A---G-------------------------------------CAACTTGCAAC-ATCGC----------------------------------------------------------CCTCA---------------------------------------GCG
droFic1 scf7180000453872:91651-91902 + AAGT---CA-----GGTGCACCAGCAGCACCCGAC--------GCCGATGG-----TCAA---T-----TCGCAGTCGA---CAGGTGC-GCTA-AACAGTGT-----GGGTCAGACGGTTGTCGATTCGCCACTACCACCACCAACACCA------CAA---------------------------------ACA---GCAGCAG---------------------------------------------------------------------------------------------------------CAATCGCATCTGCATC---------------------TGCATTAGCATCTGCATCTGCATCAGTCATTGCAAGCA---------------ACACCACAGTCACCACAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGCCACAGC-------------------------------------------------------A---GCCAC-C---ACCAACAGTAGCAGC---------------A---G-------------------------------------CAAGTTGCCGCCGTCG-------------------------------------------------------------------------------------------------------GC-
droEle1 scf7180000491023:298304-298534 - GCAG---CA-----GCAGCAGCAGCAGCAACATCC--------GCCC-GAG-----CCAT---T-----TGGCGGCCAG---CAGCCGT-ACAA-AAA-GCAACGTCTGAGCGAGGCCAATGCC--------------------------------------------------------------------------------------------------------AGCAAC-------A-----------------TGAATCACCTG-----CCACCTCAC------------------------------CCGCAGCAACAGC---------------------AGCAACAGCAACAGCAG----------------------------------------------------------------------------------------------------CAGCAACA-----------------------------------------CCAGGCACACCAGCA--------------------ACACCAGCGA------T-----------------------------CCTC---------------------------A---C-----------------------------------------------------------CAGCGCAAGTGCAACAGC----AG-C---AACAACAG------------AT------------------------------------------------------GAACAGCAG----------------------------------------------------------------TCG---------------------------------------GCA
droRho1 scf7180000779986:285111-285355 + TCAG---GT-----GCACCAGCAGCAGCATCAGAC--------GCCGATGG-----TCAA---T-----TCGCAGTCGA---CAGGTGC-GCTA-AACAGTGT-----GGGACAGACGGTTGTCGATTC---------ACCACCAACACCA------CAA---------------------------------GCA---GC------------------------------------------------------------------------------------------------------------------------AGCAGC---------------------AGCAATCGCATCTGCATCTGCATCAGTCATTGCAAGCAACACCACAATCAGCAACACCACAGTCACCACAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGCCACAG-------------------------------------------------------------C----C---ACCAACAGTA---GC---------------A---G-------------------------------------CAAGTTGCCGCCGTCGCT---------------TA------G---------------------------------CATTA---------------------------------------GCA
droBia1 scf7180000302428:5138993-5139217 + GCAG---CA-----GCAGCAACAACAGCAGCAACAGCA-----GGCAAT-G-----GCAG---TGAGTGGCT----CGG---CGGGCGG-AC----------------------------------------------------------A------AGT---------------------------------GC------------AACAGCAGCAGGT---------------------------------------------------------------------------------------GCAGCAAGTGCAG-------------------------------------------------------------------------------------------------------------------------------------------------CAACAAGTCCAGCAGCAGCAGCAACAGCAGCTACA--ACATCATCAAATC-------------------------------------------------------ATAGACT---------CC------------------------TCGGGAAA----------------------------------------------------CATAACAACGGCCACGACGAGCGCTCAAGCGGCGGCTGCCGCCC---A---------GC------------------A---A-------------------------------------CAGGCGGCC--A----------------------------------------------------------------GTCA---------------------------------------GCA
droTak1 scf7180000415843:240342-240550 + CCAG---CA-----GCAGCAGCAGCATCAG---AC--------GCCGATGG-----TCAA---T-----TCGCAGTCGA---CAGGTGC-GCTA-AATAGTGT-----GGGACATACGGTTGTCGATTCTCCACCATCACCAATAACACCA------CAA---------------------------------GCA---GCAGCAG---------------------------------------------------------------------------------------------------------CA---------------------------------------------------ACTGCATCAGTCATTGCAAGCA---------------ACACAACAGTCACCACAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAG-------------------------------------------------------------------C----C---ACCAACAGTA---GC---------------A---G-------------------------------------CAAGTTGCCGCCTTTGC------------------------------------------------------------TAA---------------------------------------TTG
droEug1 scf7180000408176:456818-457071 + TCAG---GT-----GCACCAGCAGCAGCATCAGAC--------GCCGATGG-----TCAA---T-----TCGCAGTCGA---CAGGTGC-GCTA-AATAGTGT-----GGGACATACGGTTGTCGATTC---------ACCACCAACACCA------CAA---------------------------------ACT---GCAGCAG---------------------------------------------------------------------------------------------------------CAATT---------------------------------GCATCTGCATCTGCATCTGCATCAGTCATTGCAAGCAACAACACAATCAGCAACACCACAGTCACCACAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGCCACAGCC-------------------------------------------------------------AC-C---AACAACAGTA---GC---------------A---G-------------------------------------CAAGTTGCCGCCGTCGCT---------------TG------G------------------------------CGCTAACA---------------------------------------GCA
dm3 chrX:8342747-8343005 - A--G---CAA--CAGCAGCAGCAGCAACAGCAACAG--------------G-----GAGT---T-----CTGCAGCTAC---CGGCCAC-GCCC-TCCAGCA----------------------------------------GCTCCACCT------CCGGCA-----------ATTCACCCG----------------------------------------------------------------------------ACTT--------------------------GCTGGGCTACCAGATGGAGCAGCAACTGCAACAGCAAC---------------------ACCAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------CAGCAACA-----------------------------------------CCAGTCCCAGC----------------------------------AGCAAC----------------ATCTCCACC--------------------------------------------------------------------------------------------------------------------------A----------------GCAACACCAGGCTAACCAGCA---ACAATC--------------------------------------G--------------------------CTGCTCCAACAGAGCCAGAATCACACGCAATATGGCAGCTATCATCA---------------------------------------TGC
droSim2 x:10716509-10716753 + CCAGAGTCAGGT--GCATCAGCAGCAGCATGCGAC--------GCCGATGG-----TCAA---T-----TCGCAGTCGA---CAGGTGC-GCTA-AATAGTAT-----GGGACAGACGGTTGTCGATTC---------A---------CCA------CAA---------------------------------GCA---G------------------------------------------------------------------------------------------------------------------CCGCAGCAGCAGC---------------------AGCAAATGCATCTGCATCTGCATCAGTCATTGCAAGCAACAACACAATCAGCAACACCACAGTCACCACAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGCCACGGCCAC----------------------------------------------------A---GC----C---AGCAACAGTA---GC---------------A---G-------------------------------------CAAGTTGCCGCCGTCGCT------------------------------------------------------------------------------------------------------TG
droSec2 scaffold_12:1396545-1396772 + GCAA---CA-----GCAGCAGCAGCAGCAACAACAGCAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------GC---AG---CAG---C------------------------------------------------------------------------------------------AGGAGCAGCAGCATCTGCAGGAGCAGC---------------------AGCAGCATCTGCAGCAA----------------------------------------------------------------------------------------------------CTGCATCA-----------------------------------------CCATGCGCACCACCACCTGCCTCAGCCTCTCCACACCACCAGCCA------TCACCACAG-CG-CGCATCCCCACCTGCAG------------CA---------------------G------------------------------------------------------------------------------------C---AGCAACAGCA---GC---------------A---G-------------------------------------CAACATGCAGTCGTCGCCTCCTCACCCTCCTCGGT------G---------------------------------CTCCA---------------------------------------GCA
droYak3 2L:11473635-11473888 + GCAG---CA-----GCAGCAGCAGCGGCAGCAGCC--------GCCGGCGG-----C------G-----GTGACCT--GAATCACCTGATGAACATGTACCATCTGCC-GGATGA------------GCA------------GCGCCACCT------GCTGCACTACCAGACTGACTCGCCCGATCTGCAGCAGC---AG---CAC---C------------------------------------------------------------------------------------------AGGCGATGCAACAGCAGCAGCAACAGC---------------------AGCAGCAGCACCTCCCG----------------------------------------------------------------------------------------------------CAGCAACA-----------------------------------------CCTTTCGCAGC-----------------------------------------------------------------------------------A---GCACCAA---CAGATCCCGC--------------------------------------------------------------------------------A----------------GCAACACCAGACCATGC---A---GCAG--------------------------------------CAG--------------------------CA------G---------------------------------CAGCA---------------------------------------ACA
droEre2 scaffold_4690:3864400-3864668 - AAGT---CAGGT--GCATCAGCAGCAGCATGCGAC--------GCCGATGG-----TCAA---T-----TCGCAGTCGA---CAGGTGC-GCTA-AATAGTAT-----GGGACAAACGGTTGTCGATTC---------ACCATCAATACCA------CAA---------------------------------GCAGCC---GCAG------------------------------------------------------------------------------------------------------------CCGCAGCAGCAGC---------------------AGCAAATGCATCTGCATCTGCATCAGTCATTGCAAGCAACAACACAATCAGCAACACCACAGTCACCACAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGCCACGGCCAC----------------------------------------------------A---GC----C---ACCAACAGTA---GC---------------A---G-------------------------------------CAAGTTGCCGCCGTCGCT---------------TG------G------------------------------CGCTAACA---------------------------------------ACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ACAG---CA-----GCAGCAGCAGCAGCAACAGCAGC--------C---GG-----CTAA---T-----TCGGAATCTG---CAGGTGC-GCTT-AACAATGT-----TGGGCAGTCAGTTGTTGATTC---------A------------------------------------------------------------------G------------------TCACAGATTCAGTCATCACCAA------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCACTATCACCACAACCACAACCACTTCCAATACCAACAACA-----------------------------------------------------------------------------------------------------------------------TCACCACAAAC-----ACCTCCACATCCAA------------CA---CTAGCTA---CGGCA---C---------------------------------------------------------------------------------------------------------------------------CAATTTAGGCTCAAACAGCAGCCATATAGTGCAACATAATATTGCCACAG----------------------------------------------------------------TCA---------------------------------------GCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................ACAGCAGC--------C---GG-----CTAA---T-----TCGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002020000000000000000000000000000000000000000000000000000000000000
..........................GCAACAGCAGC--------C---GG-----CTAA---T-----T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................TCGGAATCTG---CAGGTGC-GCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA-----------------------------------------------------------------------------------------------------------------------TCACCACAAAC-----ACCTCCACA...................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.................................CAGC--------C---GG-----CTAA---T-----TCGGAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................GATTCAGTCATCACCAA------------------------------------------------------------------------------------------------------------------------------------------------------------CTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000010000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAATACCAACAACA-----------------------------------------------------------------------------------------------------------------------TCA.........................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000010000000000000000000000000
.................................................................................................CAATGT-----TGGGCAGTCAGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000100000000000000000000000000000000000000000000000000
............................................................................CTG---CAGGTGC-GCTT-AACAATGT-----TGGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000001000000000000000000000000000
............................AACAGCAGC--------C---GG-----CTAA---T-----TCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAACCACTTCCAATACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................TGT-----TGGGCAGTCAGTTGTTGATTC---------A------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATAATATTGCCACAG----------------------------------------------------------------TCA---------------------------------------GC.2411.001000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACAACCACTTCCAATAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCATATAGTGCAACATAATA......................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAC-----ACCTCCACATCCAA------------CA---CT...........................................................................................................................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
.................................................GG-----CTAA---T-----TCGGAATCTG---CAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................GATTC---------A------------------------------------------------------------------G------------------TCACAGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.501000000000000000000000000000000000000000000000000000000000100000
.................GCAGCAGCAGCAACAGCAGC--------C---GG-----.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.501000000000000000000000000000000000000000000000000000000000001000
...G---CA-----GCAGCAGCAGCAGCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.204004000000000000000000000000000000000000000000000000000000000000
....................GCAGCAGCAACAGCAGC--------C---GG-----.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.171000000000000000000000000000001000000000000000000000000000000000
................AGCAGCAGCAGCAACAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102000000000000000000000000000002000000000000000000000000000000000
.......CA-----GCAGCAGCAGCAGCAACAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
CCAA---CA-----GCAGCAGCAGCAGCAGCAA-----------------G-----TGAA---C-----TCGGAATCTG---CAGGTGC-GCTT-AACACTGT-----TGGGCAGTCAGTTGTTGATTC---------A------------------------------------------------------------------G------------------TCACAGATTCAGTCATCAGCAA-----------------------------------CTCCACTGTTACCACAA---------C----------------------------------------CACAAAC--ATAA----------------------------------------------------------------CCACTTCCAATACCAACAACA------------TCTCCACCACCAACA-----------------------------------------CCATCAAC-----------------------------------------------------------ACCTCCATATCCAC------------CA---CCA---------------C-------------------C-------------------------------------------------------------AC-C---AACAACAACAACACC---------------A---CCAATTTAGGCTCAAGCAATAGCCATCTAGTGCAACATAATATTGCCGCAGTCA---------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................AGCAGCAA-----------------G-----TGAA---C-----TCGGAATCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000002
..........................GCAGCAA-----------------G-----TGAA---C-----TCGGAATCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.................................................................................................................................................................................................................................CACAGATTCAGTCATCAGCAA-----------------------------------CTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
......................AGCAGCAGCAA-----------------G-----TGAA---C-----TC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.CAA---CA-----GCAGCAGCAGCAGCAGCAA-----------------G-----T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.501100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACACC---------------A---CC..............................................................................................................................................................18120.081000010
droGri2
ACAG---CA-----GCAGCAGCAACAGCAGAAGCAGC--------A---TG-----CACA---G-----CAGC-----------------------------------------------------------------------------------------------------------------------------A---ACAGCAGCTGCAGCAGCATCATGCCCAGCAGC-------A-----------------ACAT--------------------------------------------------------------------------------------------------------GCGGCTGCCATTGCA-GCA---------------GCACAA----------------------------------------------------------CAGCAACTCCAGCAGCAGCAACAGCAGCACTCACATCA-----------CGCCACGC-------------------------------------ACCAAC----------------ATGCACA------------------------TCAGCAACAGCA---GCAGC--------------------------------------------------------------------------------AG-CAACAACAACAGCA---GC---------------A---G-------------------------------------CA---------------------------------------G---------------------------------CAGCAGCATCCTCATCATTCACTTGGACACAATCCGCACTTGCATCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................GC-----------------------------------------------------------------------------------------------------------------------------A---ACAGCAGCTGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.69990
...........................................................................................................................................................................................................................................................................................................................................................................................GCA-GCA---------------GCACAA----------------------------------------------------------CAGCAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50110
......................................................................................................................................................................................................A---ACAGCAGCTGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.15330
.......................................................................GC-----------------------------------------------------------------------------------------------------------------------------A---ACAGCAGCTGCAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.15330
.......................................................................GC-----------------------------------------------------------------------------------------------------------------------------A---ACAGCAGCTGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.15330
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCA---GCAGC--------------------------------------------------------------------------------AG-CAACAACAACA...........................................................................................................................................................................................24200.10220
.....................................................................CAGC-----------------------------------------------------------------------------------------------------------------------------A---ACAGCAGCTGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23100.10110
......................................................................AGC-----------------------------------------------------------------------------------------------------------------------------A---ACAGCAGCTGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.07110
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA---GCAGC--------------------------------------------------------------------------------AG-CAACAACA..............................................................................................................................................................................................22200.05110
........................................................................C-----------------------------------------------------------------------------------------------------------------------------A---ACAGCAGCTGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05110
droWil2
ACAA---CA-----ACAACAGCAGCAGCAACAACAACAACAAC--------AG---CTGC---A-----T---------------------CAC-AATAGTAA-----CACGAATACCAATA-CGAATT---------GCCACC------ACAGTCATCA---------------------------------GCAGCAA---CAC---C------------------------------------------------------------------------------------------------AACAACAACAACAACAACAAC---------------------AACAACAACAGCAACAA----------------------------------------------------------------------------------------------------CAACAACA-----------------------------------------C-------------------------------------------------------ATGAGCTC---------C-CCGCAA------------CA---TCAGCAA---CAA------------------------------------------------------------------------------------------T---ACCAACA---ACAACACCAAATATTACACGA---ACAA--------------------------------------TTG--------------------------CC------A---------------------------------CATCA---------------------------------------TCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................AACAACAACAAC--------AG---CTGC---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05110000
..AA---CA-----ACAACAGCAGCAGCAACAACAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100010
...A---CA-----ACAACAGCAGCAGCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
........A-----ACAACAGCAGCAGCAACAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
dp5
ACAC---CA-----CCAGCAACAGTTGCAACAGCAGCAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------CATCACTA---------C------------------------------------------CAGCAACAACA----------------------------------------------------------------GCAGCTGCAACACCAACAACAGCAGCAGCAGCAGCAGCAGCTGCAACACCAACAGCAGCAACAACAACACTTTCT--ACA-----------------------------------------------------------------------------------------------------------------ACAGCA---GCAGCAACAGACACTGCCACCGCCACCCATACAACATCAGCAATACAATACAGCGGCCATAACGCCCAC------------------------------------------------ATACCAACAGTTA--------------------------------------CAA--------------------------CA------A---------------------------------CAACA---------------------------------------GCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................AACA----------------------------------------------------------------GCAGCTGCAACACCAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
...................................................................................................................................................................................................................................................................................................................C------------------------------------------CAGCAACAACA----------------------------------------------------------------GCAGCTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGACACTGCCACCGCCA.....................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACACTTTCT--ACA-----------------------------------------------------------------------------------------------------------------ACAGCA---GC............................................................................................................................................................................................................................................................................................2911.0010010000000
...............................AGCAGCAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------CATCACTA---------C------------------------------------------C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
.CAC---CA-----CCAGCAACAGTTGCAACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACAACAGCAGCAGCAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................22140.0710100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAGCAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAGCAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000100000
droPer2
ACTG---CA-----GCAACAGCCACAGCCACTGCC--------ACTG-CAA-----CAAA---T-----GTGACGTCGA---CAAGTGCTGATA-AAATGCAAATGCA-AATGAA------------GCA------------ACGCCAGCA------GAA---------------------------------GCA---GCAGCAG-------------------------------------CAA-----------------------------------CAG------------------------------------------C---------------------AGCAGAAACAGCAGCAGCAGCAACA------GC----------------------------------------------------------AGCAACAACAGCAACAGCAGCAACAGCAGCAACA-----------------------------------------GCAACAGCAGC-----------------------------------------------------------------------------------A---ACAGCAACAGCA---GCAGC--------------------------------------------------------------------------------AG-C---AACAACAGCA---ACAGC------------A---ACAA--------------------------------------CAG--------------------------CA------A---------------------------------CAGCA---------------------------------------GCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCA---GCAGC--------------------------------------------------------------------------------AG-C---AACA..............................................................................................................................................................................................21200.051001000
droAna3
ACAA---CA-----GCAGCAGCAGCAGCAACAACAACA--------------------------------------------------------------------------------------------------------------GCT------TGT---------------------------------GCA---GCAGCAG---------C------------------------------------------------------------------------------------AAATGTTGCAACAACAACAGCAGCAACCGATTATGCCGCAGCAACAGCAACGAATGCAAATGCAG------------------------------------------------CCGCAAC----------------------------------------------------C--------------------------------ACAGCAAATAGTTGTCAACCAGC------------------AGATC-------------------ATAAGCGA---------T-------CCTCAACGGCTGCAATATTTGCAG---CAGCA---GC---AGAT-------TATTC-------------------------------------------------------------AG-A---AACAACAGCA---GC---------------A---G-------------------------------------CAACAGCTTGTGGGAGCG---------------CA------G---------------------------------CAGCA---------------------------------------GCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---AACAACAGCA---GC---------------A---G-------------------------------------CAACAGC...................................................................................................................2221.002020000
..................................................................................................................................................................................................................................................................................................................................GCAACCGATTATGCCGCAGCAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATC-------------------ATAAGCGA---------T-------CCTCAACGGCC...................................................................................................................................................................................................................................................................................................................2511.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTCAACCAGC------------------AGATC-------------------ATAAGC.................................................................................................................................................................................................................................................................................................................................................2511.001010000
........................CAGCAACAACAACA--------------------------------------------------------------------------------------------------------------GCT------TGT---------------------------------GCA---GC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.....................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAACCGATTATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---AACAACAGCA---GC---------------A---G-------------------------------------CAACAG....................................................................................................................2120.501010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---AACAACAGCA---GC---------------A---G-------------------------------------CAAC......................................................................................................................1950.402010001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---AACAACAGCA---GC---------------A---G-------------------------------------CAACA.....................................................................................................................2040.251000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCA---GC---------------A---G-------------------------------------CAACAGC...................................................................................................................21200.204040000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA---GC---------------A---G-------------------------------------CAACAGC...................................................................................................................19200.204040000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCA---GC---------------A---G-------------------------------------CAACA.....................................................................................................................19200.051001000
................AGCAGCAGCAGCAACAACAACA--------------------------------------------------------------------------------------------------------------G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
.CAA---CA-----GCAGCAGCAGCAGCAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
ACAA---CA-----GCAGCAGCAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000
ACAA---CA-----GCAGCAGCAGCAGCAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000001
..............GCAGCAGCAGCAGCAACAACAACA--------------------------------------------------------------------------------------------------------------GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
ACAA---CA-----GCAGCAGCAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
....................GCAGCAGCAACAACAACA--------------------------------------------------------------------------------------------------------------GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
...................AGCAGCAGCAACAACAACA--------------------------------------------------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
...................AGCAGCAGCAACAACAACA--------------------------------------------------------------------------------------------------------------GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCA---GC---------------A---G-------------------------------------CAACA.....................................................................................................................18200.051000100
droBip1
ACAA---CA-----GCAACAACCTCAGCAAATGCAGC--------CGCAAGGCAAGACATTCAT-----TATCAGCCAG---C---AGC-ACT---------------------------------------------------------T------CAATCA-----------GCTCAG----C--------G-------TCCAGCAACAGCAGCAGATTCTGGCCCAGAATCCGC-AAAACCAAAACGTCTATGTTGTGAATCAG--ACCAATCTAGCTCA------GC---------A------GCAACAGCAGCAACAACAAC---------------------AACAGCAGCTCGTGCAGCAGCAACAAATGTTGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---AGCAGCA---GCAACAGCC---------------G--------------------------------------ATAATGCC--------------------------------A---------------------------------CAGCA---------------------------------------GCASizeHit CountTotal NormTotal
No Reads
droKik1
A--G---CAG--CAGCAGCAGCAACAGCAACAGCAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------GC------------AGCAGCAGCATCT---------------------------------------------------------------------TC---------AGCAGGAGCAGCAACAACATCTGCA------------------------------------GCAG----------------------------------------------------------------------------------------------------CTGCATCA-----------------------------------------CCACGCGCACCACCACCTGCCTCAGCCATTGCATACCACCAGCCA------TCACCACAG-CG-CGCATCCCCACCTACAG------------CA------GCAGCAGCA---GCAG---------------C-----------------------------------------------------------------AG-CAACAGCAGCAACA---GC---------------A---G-------------------------------------CAACTTGCAAC-ATCGC----------------------------------------------------------CCTCA---------------------------------------GCGSizeHit CountTotal NormTotal
No Reads
droFic1
AAGT---CA-----GGTGCACCAGCAGCACCCGAC--------GCCGATGG-----TCAA---T-----TCGCAGTCGA---CAGGTGC-GCTA-AACAGTGT-----GGGTCAGACGGTTGTCGATTCGCCACTACCACCACCAACACCA------CAA---------------------------------ACA---GCAGCAG---------------------------------------------------------------------------------------------------------CAATCGCATCTGCATC---------------------TGCATTAGCATCTGCATCTGCATCAGTCATTGCAAGCA---------------ACACCACAGTCACCACAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGCCACAGC-------------------------------------------------------A---GCCAC-C---ACCAACAGTAGCAGC---------------A---G-------------------------------------CAAGTTGCCGCCGTCG-------------------------------------------------------------------------------------------------------GC-SizeHit CountTotal NormTotal
No Reads
droEle1
GCAG---CA-----GCAGCAGCAGCAGCAACATCC--------GCCC-GAG-----CCAT---T-----TGGCGGCCAG---CAGCCGT-ACAA-AAA-GCAACGTCTGAGCGAGGCCAATGCC--------------------------------------------------------------------------------------------------------AGCAAC-------A-----------------TGAATCACCTG-----CCACCTCAC------------------------------CCGCAGCAACAGC---------------------AGCAACAGCAACAGCAG----------------------------------------------------------------------------------------------------CAGCAACA-----------------------------------------CCAGGCACACCAGCA--------------------ACACCAGCGA------T-----------------------------CCTC---------------------------A---C-----------------------------------------------------------CAGCGCAAGTGCAACAGC----AG-C---AACAACAG------------AT------------------------------------------------------GAACAGCAG----------------------------------------------------------------TCG---------------------------------------GCASizeHit CountTotal NormTotal
No Reads
droRho1
TCAG---GT-----GCACCAGCAGCAGCATCAGAC--------GCCGATGG-----TCAA---T-----TCGCAGTCGA---CAGGTGC-GCTA-AACAGTGT-----GGGACAGACGGTTGTCGATTC---------ACCACCAACACCA------CAA---------------------------------GCA---GC------------------------------------------------------------------------------------------------------------------------AGCAGC---------------------AGCAATCGCATCTGCATCTGCATCAGTCATTGCAAGCAACACCACAATCAGCAACACCACAGTCACCACAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGCCACAG-------------------------------------------------------------C----C---ACCAACAGTA---GC---------------A---G-------------------------------------CAAGTTGCCGCCGTCGCT---------------TA------G---------------------------------CATTA---------------------------------------GCASizeHit CountTotal NormTotal
No Reads
droBia1
GCAG---CA-----GCAGCAACAACAGCAGCAACAGCA-----GGCAAT-G-----GCAG---TGAGTGGCT----CGG---CGGGCGG-AC----------------------------------------------------------A------AGT---------------------------------GC------------AACAGCAGCAGGT---------------------------------------------------------------------------------------GCAGCAAGTGCAG-------------------------------------------------------------------------------------------------------------------------------------------------CAACAAGTCCAGCAGCAGCAGCAACAGCAGCTACA--ACATCATCAAATC-------------------------------------------------------ATAGACT---------CC------------------------TCGGGAAA----------------------------------------------------CATAACAACGGCCACGACGAGCGCTCAAGCGGCGGCTGCCGCCC---A---------GC------------------A---A-------------------------------------CAGGCGGCC--A----------------------------------------------------------------GTCA---------------------------------------GCASizeHit CountTotal NormTotal
No Reads
droTak1
CCAG---CA-----GCAGCAGCAGCATCAG---AC--------GCCGATGG-----TCAA---T-----TCGCAGTCGA---CAGGTGC-GCTA-AATAGTGT-----GGGACATACGGTTGTCGATTCTCCACCATCACCAATAACACCA------CAA---------------------------------GCA---GCAGCAG---------------------------------------------------------------------------------------------------------CA---------------------------------------------------ACTGCATCAGTCATTGCAAGCA---------------ACACAACAGTCACCACAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAG-------------------------------------------------------------------C----C---ACCAACAGTA---GC---------------A---G-------------------------------------CAAGTTGCCGCCTTTGC------------------------------------------------------------TAA---------------------------------------TTGSizeHit CountTotal NormTotal
No Reads
droEug1
TCAG---GT-----GCACCAGCAGCAGCATCAGAC--------GCCGATGG-----TCAA---T-----TCGCAGTCGA---CAGGTGC-GCTA-AATAGTGT-----GGGACATACGGTTGTCGATTC---------ACCACCAACACCA------CAA---------------------------------ACT---GCAGCAG---------------------------------------------------------------------------------------------------------CAATT---------------------------------GCATCTGCATCTGCATCTGCATCAGTCATTGCAAGCAACAACACAATCAGCAACACCACAGTCACCACAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGCCACAGCC-------------------------------------------------------------AC-C---AACAACAGTA---GC---------------A---G-------------------------------------CAAGTTGCCGCCGTCGCT---------------TG------G------------------------------CGCTAACA---------------------------------------GCASizeHit CountTotal NormTotal
No Reads
dm3
A--G---CAA--CAGCAGCAGCAGCAACAGCAACAG--------------G-----GAGT---T-----CTGCAGCTAC---CGGCCAC-GCCC-TCCAGCA----------------------------------------GCTCCACCT------CCGGCA-----------ATTCACCCG----------------------------------------------------------------------------ACTT--------------------------GCTGGGCTACCAGATGGAGCAGCAACTGCAACAGCAAC---------------------ACCAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------CAGCAACA-----------------------------------------CCAGTCCCAGC----------------------------------AGCAAC----------------ATCTCCACC--------------------------------------------------------------------------------------------------------------------------A----------------GCAACACCAGGCTAACCAGCA---ACAATC--------------------------------------G--------------------------CTGCTCCAACAGAGCCAGAATCACACGCAATATGGCAGCTATCATCA---------------------------------------TGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................TGCAGCTAC---CGGCCAC-GCCC-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTCCCAGC----------------------------------AGCAAC----------------ATCTCCACC--------------------------------------------------------------------------------------------------------------------------.........................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GCAACAGCAACAG--------------G-----GAGT---T-----CTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGCCAGAATCACACGCAATATGG......................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................................................................TACCAGATGGAGCAGCAACTGCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................................................................................GATGGAGCAGCAACTGCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................TCACCCG----------------------------------------------------------------------------ACTT--------------------------GCTGGGCTACCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AGCAACAGCAACAG--------------G-----GAGT---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CAGCAGCAGCAACAGCAACAG--------------G-----GA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..............GCAGCAGCAGCAACAGCAACAG--------------G-----GAGA---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................CAGCAACAGCAACAG--------------G-----GAGT---T-----CTGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................GCAAC---------------------ACCAACAGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.871300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................AAC---------------------ACCAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------CA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.8040000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCACC--------------------------------------------------------------------------------------------------------------------------A----------------GCAACACCA...............................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................GCAACAGCAAC---------------------ACCAACAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................AAC---------------------ACCAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.4020000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................GCAGCAA----------------------------------------------------------------------------------------------------CAGCAACA-----------------------------------------CCAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................GCAAC---------------------ACCAACAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................GCAAC---------------------ACCAACAGCAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................CAAC---------------------ACCAACAGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................C---------------------ACCAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------CAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2390.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................ACAGCAAC---------------------ACCAACAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CAGCAGCAGCAACAGCAACAG--------------G-----.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................AGCAAC---------------------ACCAACAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................C---------------------ACCAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------CAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................22100.1010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................AGCAAC---------------------ACCAACAGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................AAC---------------------ACCAACAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................C---------------------ACCAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------CA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................20170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAA----------------------------------------------------------------------------------------------------CAGCAACA-----------------------------------------C..............................................................................................................................................................................................................................................................................................................................................................................................................19180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................C---------------------ACCAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AGCAGCAGCAGCAACAGCAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GCAGCAGCAGCAACAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........A--CAGCAGCAGCAGCAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...G---CAA--CAGCAGCAGCAGCAACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........A--CAGCAGCAGCAGCAACAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAA----------------------------------------------------------------------------------------------------CAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAA----------------------------------------------------------------------------------------------------CAGCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAA----------------------------------------------------------------------------------------------------CAGCAACA-----------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CAGCAGCAGCAGCAACAGCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................ACCAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------CA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CAGCAGCAGCAACAGCAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
droSim2
CCAGAGTCAGGT--GCATCAGCAGCAGCATGCGAC--------GCCGATGG-----TCAA---T-----TCGCAGTCGA---CAGGTGC-GCTA-AATAGTAT-----GGGACAGACGGTTGTCGATTC---------A---------CCA------CAA---------------------------------GCA---G------------------------------------------------------------------------------------------------------------------CCGCAGCAGCAGC---------------------AGCAAATGCATCTGCATCTGCATCAGTCATTGCAAGCAACAACACAATCAGCAACACCACAGTCACCACAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGCCACGGCCAC----------------------------------------------------A---GC----C---AGCAACAGTA---GC---------------A---G-------------------------------------CAAGTTGCCGCCGTCGCT------------------------------------------------------------------------------------------------------TGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA---GC---------------A---G-------------------------------------CAAGTTGCCGCCGTCGCT------------------------------------------------------------------------------------------------------TG2611.00110000000000000000
.........................................................CAA---T-----TCGCAGTCGA---C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.50100000010000000000
.....................CAGCAGCATGCGAC--------GCCGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................GCATCTGCATCTGCATCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.33100010000000000000
droSec2
GCAA---CA-----GCAGCAGCAGCAGCAACAACAGCAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------GC---AG---CAG---C------------------------------------------------------------------------------------------AGGAGCAGCAGCATCTGCAGGAGCAGC---------------------AGCAGCATCTGCAGCAA----------------------------------------------------------------------------------------------------CTGCATCA-----------------------------------------CCATGCGCACCACCACCTGCCTCAGCCTCTCCACACCACCAGCCA------TCACCACAG-CG-CGCATCCCCACCTGCAG------------CA---------------------G------------------------------------------------------------------------------------C---AGCAACAGCA---GC---------------A---G-------------------------------------CAACATGCAGTCGTCGCCTCCTCACCCTCCTCGGT------G---------------------------------CTCCA---------------------------------------GCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................CAGCAGCATCTGCAGGAGCAGC---------------------AG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
......................................GCA--------------------------------------------------------------------------------------------------------------------------------------------------------GC---AG---CAG---C------------------------------------------------------------------------------------------AGGAGCAGCAGCATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.5010010
..................................AGCAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------GC---AG---CAG---C------------------------------------------------------------------------------------------AGGAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.2510010
........................CAGCAACAACAGCAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------GC---AG---......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040040
.....................................AGCA--------------------------------------------------------------------------------------------------------------------------------------------------------GC---AG---CAG---C------------------------------------------------------------------------------------------AGGAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.1710010
.....................................AGCA--------------------------------------------------------------------------------------------------------------------------------------------------------GC---AG---CAG---C------------------------------------------------------------------------------------------AGGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020002
..................................AGCAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------GC---AG---CAG---C------------------------------------------------------------------------------------------AGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510001
..........................GCAACAACAGCAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------GC---AG---C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG------------CA---------------------G------------------------------------------------------------------------------------C---AGCAACAGCA---GC---------------....................................................................................................................................................................19200.0510010
.......................................CA--------------------------------------------------------------------------------------------------------------------------------------------------------GC---AG---CAG---C------------------------------------------------------------------------------------------AGGAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------------------------------------------------------------C---AGCAACAGCA---GC---------------A---G-------------------------------------CAACA.....................................................................................................................21200.0510010
..................................................................................................................................................................................................C---AG---CAG---C------------------------------------------------------------------------------------------AGGAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
...A---CA-----GCAGCAGCAGCAGCAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010
.........................AGCAACAACAGCAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------GC---AG---......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100
..............GCAGCAGCAGCAGCAACAACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510010
.....................CAGCAGCAACAACAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510010
droYak3
GCAG---CA-----GCAGCAGCAGCGGCAGCAGCC--------GCCGGCGG-----C------G-----GTGACCT--GAATCACCTGATGAACATGTACCATCTGCC-GGATGA------------GCA------------GCGCCACCT------GCTGCACTACCAGACTGACTCGCCCGATCTGCAGCAGC---AG---CAC---C------------------------------------------------------------------------------------------AGGCGATGCAACAGCAGCAGCAACAGC---------------------AGCAGCAGCACCTCCCG----------------------------------------------------------------------------------------------------CAGCAACA-----------------------------------------CCTTTCGCAGC-----------------------------------------------------------------------------------A---GCACCAA---CAGATCCCGC--------------------------------------------------------------------------------A----------------GCAACACCAGACCATGC---A---GCAG--------------------------------------CAG--------------------------CA------G---------------------------------CAGCA---------------------------------------ACASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................ATCTGCC-GGATGA------------GCA------------GCGCCACCC------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000
............................................................................................................................................................................................CAGCAGC---AG---CAC---C------------------------------------------------------------------------------------------AGGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.33101000000000
...........................................................................................................................................................................................................................................................................................................................AGCAGCAACAGC---------------------AGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
........................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAGC---------------------AGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100100000000
..........................................................................................................................................................................................................................................................................................................................CAGCAGCAACAGC---------------------AGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000010000
GCAG---CA-----GCAGCAGCAGCGGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
....................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAACAGC---------------------AGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100010000000
...................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCAACAGC---------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
.........................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGC---------------------AGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
droEre2
AAGT---CAGGT--GCATCAGCAGCAGCATGCGAC--------GCCGATGG-----TCAA---T-----TCGCAGTCGA---CAGGTGC-GCTA-AATAGTAT-----GGGACAAACGGTTGTCGATTC---------ACCATCAATACCA------CAA---------------------------------GCAGCC---GCAG------------------------------------------------------------------------------------------------------------CCGCAGCAGCAGC---------------------AGCAAATGCATCTGCATCTGCATCAGTCATTGCAAGCAACAACACAATCAGCAACACCACAGTCACCACAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGCCACGGCCAC----------------------------------------------------A---GC----C---ACCAACAGTA---GC---------------A---G-------------------------------------CAAGTTGCCGCCGTCGCT---------------TG------G------------------------------CGCTAACA---------------------------------------ACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................CAGGTGC-GCTA-AATAGTAT-----GG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
.......................GCAGCATGCGAC--------GCCGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
...................................................................................AGGTGC-GCTA-AATAGTAT-----G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---G-------------------------------------CAAGTTGCCGCCGTCGCT---------------T........................................................................................2111.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................CATTGCAAGCAACAACACAATCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
......................................................................................................................................................A------CAA---------------------------------GCAGCC---GCAG------------------------------------------------------------------------------------------------------------CCGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
................ATCAGCAGCAGCATGCGAC--------GCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
.........................................................CAA---T-----TCGCAGTCGA---CAGGTGC-GCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
.........................................................CAA---T-----TCGCAGTCGA---CAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
......................AGCAGCATGCGAC--------GCCGATGG-----T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
..................CAGCAGCAGCATGCGAC--------GCCGATGG-----TC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCCGCCGTCGCT---------------TG------G------------------------------CGCT..............................................2311.0011000000

Generated: 05/17/2015 at 03:47 AM