ID:

dvi_1890

 Coordinate:

scaffold_12726:1112915-1113065 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-1.6 -1.3 -0.9

Flybase annnotation

exon [dvir_GLEANR_15565:9]; CDS [Dvir\GJ15244-cds]; intron [Dvir\GJ15244-in]

Repeatable elements

NameClassFamilyStrand
(TTG)nSimple_repeatSimple_repeat+
mature
  1. dvi_1890  scaffold_12726:1112966-1112987 -
  2. scaffold_13049:8127370-8127391 -
star
  1. scaffold_12723:2336104-2336126 -
  2. scaffold_12723:2953987-2954009 +
  3. dvi_1890  scaffold_12726:1112926-1112948 -
  4. scaffold_12822:1281705-1281727 -
  5. scaffold_12875:1008531-1008553 -
  6. scaffold_12875:11786018-11786040 -
  7. scaffold_12875:13469158-13469180 -
  8. scaffold_12875:13469224-13469246 -
  9. scaffold_12875:17197079-17197101 +
  10. scaffold_12928:5751582-5751604 -
  11. scaffold_12928:7082331-7082353 -
  12. scaffold_12928:7082382-7082404 -
  13. scaffold_12928:7428900-7428922 -
  14. scaffold_12963:9002189-9002211 -
  15. scaffold_12970:2673788-2673810 +
  16. scaffold_12970:7516592-7516614 +
  17. scaffold_13047:9486722-9486744 +
  18. scaffold_13049:7376102-7376124 +
  19. scaffold_13049:10827547-10827569 +
  20. scaffold_13049:13816574-13816596 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATTCATGAAGAGTCGCGATGAGAAGAACGAAGATGGCAGCGACCAAGAGCGTAAGTAGCAAAGCTCCAGCGCGTGGCATTCAAACAGAATACAAAAAAAAAAAACGCGTTAACAACAACAACAACAACAACAAACAACAAGAACAACAACAGCATCATCAACAGCAATAATAATAATGATAATGATAATGTTAATGTTAATAATCATCAGAACAAGAACAAGAACAACAAAAGCATCGAACGTCTTGAGCG
********************************************************************************************************************************.....................((..(((((.................)))))..))......************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M061
embryo
 SRR060667
160_females_carcasses_total
 M027
male body		 GSM1528803
follicle cells		 M028
head
 SRR060661
160x9_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR1106730
embryo_16-30h
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 V047
embryo
 V116
male body		 SRR060674
9x140_ovaries_total
 SRR060683
160_testes_total
 SRR060681
Argx9_testes_total
................GATGAGAAGAACGAAGATGGCAGC................................................................................................................................................................................................................... 24 0 1 2.00 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....TGAAGAGTCGCGATGAGAAGAACG.............................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..TCATGAAGAGTCGCGATGAGAAGAACGAAGA.......................................................................................................................................................................................................................... 31 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....TGAAGAGTCGCGATGAGA.................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TCGCGATGAGAAGAACGAAGATGGC...................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................ACGAAGATGGCAGCGACCAAGAGCCT....................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................GAGAAGAACGAAGATGGCAGCGACC............................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AGAACGAAGATGGCAGCGACCAAGAGC......................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ATTCATGAAGAGTCGCGAT........................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................GAACGAAGATGGCAGCGACCA.............................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................AAGAACGAAGATGGCAGCGACC............................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................GATGGCAGCGACCAAGAGCC........................................................................................................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................GATGAGAAGAACGAAGAT......................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................ACGAAGATGGCAGCGACCAAGAGCC........................................................................................................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............GCGATGAGAAGAACGAAGATGGCAG.................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........ACTCGCGACGAGAAGAAC............................................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................AGAACGAAGATGACAGCGA................................................................................................................................................................................................................. 19 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................AACAAACAACAAGAACAACAAC..................................................................................................... 22 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................AACAGCATCATCAACAGCA..................................................................................... 19 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................AACAGCATCATCAACAGC...................................................................................... 18 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................CCAGCGCGAGGCATTCAAAAA..................................................................................................................................................................... 21 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................CAAACAACAAGAACAACAACA.................................................................................................... 21 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TCAAACAGTGTACAAAAAAAA....................................................................................................................................................... 21 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................GCAATAACAATAATGAGATTGA.................................................................. 22 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................ACAGAATACAAAAAAAAACAA................................................................................................................................................... 21 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................AATCATCCGTACAAGAAAAA.............................. 20 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................AACAACAACAACAACAAC........................................................................................................................ 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TAATAATAATGATAATGATAATG............................................................. 23 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AACAACAACAACAACAAACAACA................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAAGTACTTCTCAGCGCTACTCTTCTTGCTTCTACCGTCGCTGGTTCTCGCATTCATCGTTTCGAGGTCGCGCACCGTAAGTTTGTCTTATGTTTTTTTTTTTTGCGCAATTGTTGTTGTTGTTGTTGTTGTTTGTTGTTCTTGTTGTTGTCGTAGTAGTTGTCGTTATTATTATTACTATTACTATTACAATTACAATTATTAGTAGTCTTGTTCTTGTTCTTGTTGTTTTCGTAGCTTGCAGAACTCGC
*************************************************************.....................((..(((((.................)))))..))......******************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 M028
head
 SRR060668
160x9_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060674
9x140_ovaries_total
..................................................................................................................................................................TCGTTATTATTTTTGCTATTA.................................................................... 21 2 11 0.09 1 1 0 0 0 0
....................................................................................................................................................................................................................................TCTTCGTGGCTTCCAGAAC.... 19 3 20 0.05 1 0 0 0 1 0
..............................................................................................................TTGTTGTTGTTGTTGTTGTTGTTT..................................................................................................................... 24 0 20 0.05 1 0 0 0 0 1
.................................................................................................................TTGTTGTTGTTGTTGTTGTT...................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................................................................TTGTCTTCGTGGCTTCCAG....... 19 3 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12726:1112865-1113115 - dvi_1890 ATTCATGAAGAGTCGCGATG-------------------------------------------------------------------AGAAGAA-CGAAGATGGCAGCGA-----------------------------------------------------------------------------------------------------------------------------------------------CCAAGAGCGTAAGT---AGCAAAGCTCCAGCGCG-----------TGGCATTCAA---------------ACAGAATACAAAAAAAAAA--AACGCGTTAA---C-------A---------ACAACAACAACAACAAC---------------------------------------------A----------AAC------AACAAGAACAA-------------------------CAA------CAGCA------------------TCATCAACAGCAAT---------------AATAATAAT---GATA------ATGATAATGTTAATGT------TA------ATAATCATCAGAACAAGAACAAGAACAACAAA---------------------------A--------------------GCATCGAACGTCTT--GA--------GCG------------
droMoj3 scaffold_6473:9051858-9052101 + dmo_714 CTTCATGAAGAGTCGCGATG-------------------------------------------------------------------AGAAGAA-CGAAGATGGCAGCGA-----------------------------------------------------------------------------------------------------------------------------------------------TCAAGAGCGTAAGT---AGCATAGCTCCAGGGCG-----------TGGCATTCAACCAAACAGAAAATCTATTGAAAAC------GAGATTAACGCGTTAA---T--------CCA------G-------CATTTCAAC---------------------------------------------A-----------ACAACAACAACAACAACTA-------------------------C--TACTACT------------------------------------------------------------------AACAACAACAATTATTACAATAA------TA------ACA---------ACAACGACAACAATAGCATC---------------------------GAGAACAAACAGTT-------GTG--AAAAATCTT--GA--------GCA------------
droGri2 scaffold_15203:4229936-4230125 - GAA------GAGTCGCGACG-------------------------------------------------------------------AGAAGAA-TGAAGATGGCAGTGA-----------------------------------------------------------------------------------------------------------------------------------------------CCAAGAGCGTAAGT---AGAAAAGCGCCAACGTC--------AACTGATGTCCGACCAA--------------------------------------------------------------AAAAAAAAA-----------------------------------------------------------------------AACAGCATTATGTA-------------------------TAA------TAACAACAACAACAATAAGAACAACAACAACAGCAAT------------------------------------------AAGAGCAACAG------CA------ACA---------GCAATAAGAACAACAAGAAT---------------------------A--------------------GCGTC-----------------------A------------
droWil2 scf2_1100000004921:2691618-2691819 + ACG-------AAG------A-ACTTTAAC----------------------------------------------------------ATGAAAAATCTATTGAAAGATAA---------------------C-------------CAAATAA----------------------------------------------TGCA--------------------ATTGACAA----GAGAAATTGGTTTAACAGTTGATTTGGAAA--------------------------------------------------------------------------------------------------------------------------CGCAAC---------------------------------------------A------------------------------------------------------------------ACAACAACCACAACAACAACAGCAACTACAACTAT---------------TAAAATAATAATAATAAAATTAAT------------------------------------------AATGATAAGAATAGCAAC---------------------------AAAAGCCACTGAATAGCAACAGCATG------------A--------ACA------------
dp5 2:25900602-25900788 + AAA-------AGACGAAAGG-------------------------------------------------------------------GAAAAAA-TGCCAATGGCAG--A-----------------------------------------------------------------------------------------------------------------------------------------------CGAGACGCAAACGC---AGCGACGCCGCCACGCA--------AAGA------------------------------------------A--ATAGTAATCA-------------------AAACAAAATAAAAATCATT---------------------------------------------A-----------A---------------AAT-------------------------TCA------TAAAAAA----------AAGACAGCGACTACAACAAC---------------AAGA------------------AC---AACAACAACAA------CA------ACA---------ACAACGATAAGAGCAACAAC---------------------------A--------------------ATT------------------TTAAAGTT------------
droPer2 scaffold_2:2774959-2775152 + AGA-------GAC------AATGCTGCCG-----------------------------------------------------------------------GCGGCGGGCA---------------------CCAACAGCAACAATCAGA-----------------------------------------------------------------------------------------------------------------------------------CGA--------------------------------------------------------------------------------------------------CACAGATCAAC---------------------------------------------A-----------ACAACAACAACAACAACAA-------------------------CAACAACAACAACA------------------------------ACAACAACAACAACAACAACAACAAATACAACAATAGCAAC------AAAGGGAA------AAATCAAAATG---------TCAAGAACAACAACAATAAC---------------------------A--------------------GCAAAAAGAATCCTGGCA--------ACA------------
droAna3 scaffold_13248:3980075-3980296 + AGA-------AGA----CCA-----------------------------------------------------------------------------ACAACAACAACAACAATAA-------------------------------G----TATCAGAATCAGAAGCAATAAGTGAGCTGCAAAAAATATTCAACAACAAAATCAACAACAAAA--------------------------------------------------------------TGTCAAC---------------CATGTT-----------------------------------------------------------------------------------C-----------------------------------------------------------AACAACAACAGCAACAACAA-------------------------CAA------CAACA------------------------------------------ACAACAACAACAACAACAACAACAACAACAACAACAACAGCAA------CA------GCA---------ACAGCAACAGCAACAACAAC---------------------------A--------------------ACAACAAACACCAA--TA--------GTA------------
droBip1 scf7180000396434:621104-621245 + ACA-------AAA----AAA-------------------------------------------------------------------------A-CA---ACAACAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---A-------A---------A---------TTACAA---------------------------------------------AAACAACAACG-ACG------AACAAAAACAA-------------------------CAA------CAAAA------------------------------------------ACAACAACAACAATAAAAATTACAACAACAACAACAAAAATTA------CA------ACA---------ACAACAACAAAAATTACAAC---------------------------A--------------------ACAACA--------------------AAC------------
droKik1 scf7180000302468:1321157-1321409 + GAT-------GAG------A-GGCGCAACAACGATATACAGTAATCTAGTGCTTGT-CAAA---------------------------------------------------------------------------------------------------------------------CTGCAGAGCCTTATTAAAACTAACTCCAACATCAAAATGTTGCAAATGCCAA----A--------------------------------------------------------------------------------------------------------------------------------------------ACAAAAAC------------------------------------------------------------------------AAACTAGGAGAGG-------------------------CAA------CAGCAACAAAAACAACAGCAGCATCAACAACAGCAAT------------------------------------------AACAACAACAA------CA------ACA---------GCAACAATAAAG----CGCCGTTTCAACGTCGCAAAATTACAACGATA---ACA--------------TAAGC---AATCCGAGCG--------AGATAGAGTTTAGAG
droFic1 scf7180000454066:1395074-1395272 + GTG-------AC-------GAGGCGGGCG------------------------------------------------------------------------AGGCGGTTA---------------------CCAAAAGCAT---------------------------------------------------------------------CACCGAGTTGCGAGTGCCGACCATA-------------ACGA-CCACAAAC----------------------------------------------------------------------------------------ATCAG---CAACAGCA-GCA------G------------CAA---------------------------------------------CAT--------CTACAGCAACAGCAACAGCAG-------------------------CAA------CAGCA------------------------------------------ACATCAACAGCAGCAATACGAACAACAGCAGCAACAGCAACAC------AA------ACA---------ACAACAACAACAACAACAAT---------------------------A--------------------GCAAC----------------------------------AA
droEle1 scf7180000490993:1676297-1676452 - GAG-------CAGCA-------------------------------------------------------------------------------------GCAGCAGC-------------------CC-TC----------------------------------------------------------------------------------------------------------------------------------------------------CAGTCCCGCTTTGGCAGT-------C-----------------------------------A--GTGGCAATAA-------------------CAACAACAACAATGCCAGC---------------------------------------------G-----------G----------------------------------------------------TAGCA---------------------------------------------ACAACAACAACAACAGCGGCAGTAGCAACAACAACACCAG------CA------GCA---------GCAACAATAATAATAACGAT---------------------------A--------------------ATGATG---------------CACATGTT------------
droRho1 scf7180000762853:122345-122548 - GAG-------CTG------A-GGCAGCAGAAGGAGCTACAGT--TCCTGGACATGTTGCATCAGCAGCAGGCGCAACATCAGCAACAGGCGCAA-CAACAGCT------------------------------------------------G----------------------------------------------CTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAG---------------------------------------------CAA--------CAACAACGACAGCAGCAGCAG-------------------------CAA------CAACA------------------------------------------ACAACAACAACAACAACAACAACAACAACAACAACAACAACAA------CA------ACA---------ACAACAACAACAGCATCAAC---------------------------A--------------------GCATC----------------------------------AA
droBia1 scf7180000301501:1076611-1076840 + GAT-------AAT------AAGAACGATA-----------------------------------------------------------------------ACAGCGAC-A------------------TAAC----------------------------------------------------------------------------------------------------------------------------------------------------TAGTAACATTAAGGAAAA-------A-----------------------------------G--GAGGCATCAT-------------------CAACAACAACAGTAACAACGACGACGACGACAACAACAACAATAACGATAACGATAACGATAACAA--------TAATAGCAATAATAATAATAA-------------------------CAA------TAATA------------------------------------------ATAATAACAATAATAATAATAACAATAATAATAATAACAATAA------TA------ATA---------ACAATAATAATAACAATAAC---------------------------A--------------------ACAAC----------------------------------AA
droTak1 scf7180000415281:47399-47603 - CAA-------CAACGACAAC-------------------------------------------------------------------ATCAAAG-CTTTGATGGCGGCGCCAAAGCCAAACGGCGA------------------------------------------------------------------------------------------------------------GGC-------------------------------------------------------------------------------------------------------AG--AGCGCCCCACAAGCAACAACT-GCAACAATAACAACAACAATTGCAGC---------------------------------------------A-----------GCAGCAA-------------------------------------------------------------------------CAACAACAAT------------CACAGCGATGACAATGAAACCGGCAGCAACAACAACAATAA------CA------ACA---------ACAATGACAACAGCAACA--------------------------------------------------ACACCAG---------CAGTTGCAATGTC------------
droEug1 scf7180000409182:431372-431559 + GCG-------GCC------A-CGTGCAAC---------------------------------CCCAGCAAGTGCAACAAGTGCAATTCTCACAA-CAACAACA------------------------------------------------G----------------------------------------------CCAC---------------------------------------------------------------------------------------------------------------------------------------------------TGCAA---C-------A---------ATAATAATAATACC------------------------------------------------AT--------CAATAATAATAATAATAATAA-------------------------CAA------CAACA------------------------------------------ACAATAATAATAATAATAATAATAATAAT------AATAATACAAGCAGCA------ATA---------CCAACAACAACAACAACAAC---------------------------A--------------------ACAAT----------------------------------AA
dm3 chrX:7540755-7540973 + AAT-------AGTTGTAGTC-------------------------------------------------------------------GAAAGAA-CAACAATGGCGGCAATGAAAGTGAGCAACATGTG-GC----------------------------------------------------------------------------------------------------------------------------------------------------CAGTTCG------------------------------------GCGGAGGAC------GATG--ATTGCGCCAA---C-------A---------ACAATACAAATACCAGC---------------------------------------------A-----------ATAACAACAATACCAGCAA-------------------------CACCGCCACCAGCA------------------------------ACACGA------ACAACAACAATAATAATAACA------GCAGCAGCGGCAACAG------CGAGAAGCGCA---------AGAAGAAGAACAATAACAAC---------------------------A--------------------ACAAC------------------------------------
droSim2 x:2561582-2561738 - GTC-------GC----AACC-------------------------------------------------------------------GCAACAA-CAAC------AACAA-----------------------------------------------------------------------------------------------------------------------------------------------CCTGAACCGCCAGCAGCAGAGA--CGTCG---------------------------------------------------------------TCGCCCTGG---C------------------------------------------------------------------------------------------------------------AACAACAACAACAACAACAACAGGCGACGCCT----CAACAACAA------------------CAACAACA--------------------------------A------GC---AGCGACAGCAG------CA------ACA---------CCACCGTCAGCAGCAACAAC---------------------------A--------------------ACAAC-----------------------G------------
droSec2 scaffold_2946:410-574 - AAA-------AAA----ATT-------------------------------------------------------------------ACGATAA-T-------------------------------------------------AAAATAA----------------------------------------------TAAG---------------------------------------------------------------------------------------------------------------------------------------------------AATAA---TAATA-------------A---TAAT---AATAA---------------------------------------------TAA--------TAATAATAATAATAATAATAA-------------------------TAA------TAATA------------------------------------------ATAATAATAATAATAATAATAATAATAAT------AATAATAA------TAATAATAATA---------ATAATAATAATAATAATAAT---------------------------A--------------------ATAATA---------------TGTGTCCT----------AA
droYak3 v2_chrUn_1173:1285-1430 + AAA-------AAT------A-ATAATAAT----------------------------------------------------------------------------A----------------------------------------------------------------------------------------------AT---------------------------------------------------------------------------------------------------------------------------------------------------AATAA---TAATA-------------A---TAAT---AATAA---------------------------------------------TAA--------TAATAATAATAACAATAATAA-------------------------TAA------CAATA------------------------------------------ATAATAACAATAATAATAACAATAATAATAATAATAATAATAA------TA------ATA---------ATAATAATAATAATAATAAT---------------------------A--------------------ATAAT----------------------------------AA
droEre2 scaffold_4690:16457377-16457587 + AAT-------AGTTGTAGTC-------------------------------------------------------------------GAAAGAA-CAACAATGGTGGCAATGAAAGTGAGCAACATGTG-GC----------------------------------------------------------------------------------------------------------------------------------------------------CAGTTCA------------------------------------GCGGAGGAC------GATG--ATTGCGCCAA---C-------A---------ACAATACGAATACCAGC---------------------------------------------A-----------ATAACAACAACACCAGCAG-------------------------CACCGCCACCAGCA------------------------------AC---------------ACGAACAAC---AACAACAACAAT---------AATAA------TA------GCA---------ACAATAACAACAACAACAAT---------------------------A-----------ACAACAACAGCAGC------------A--------GCG------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATTCATGAAGAGTCGCGATG-------------------------------------------------------------------AGAAGAA-CGAAGATGGCAGCGA-----------------------------------------------------------------------------------------------------------------------------------------------CCAAGAGCGTAAGT---AGCAAAGCTCCAGCGCG-----------TGGCATTCAA---------------ACAGAATACAAAAAAAAAA--AACGCGTTAA---C-------A---------ACAACAACAACAACAAC---------------------------------------------A----------AAC------AACAAGAACAA-------------------------CAA------CAGCA------------------TCATCAACAGCAAT---------------AATAATAAT---GATA------ATGATAATGTTAATGT------TA------ATAATCATCAGAACAAGAACAAGAACAACAAA---------------------------A--------------------GCATCGAACGTCTT--GA--------GCG------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................GATG-------------------------------------------------------------------AGAAGAA-CGAAGATGGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002100000000001000000000000000000000000000000000000000000000000000
.....TGAAGAGTCGCGATG-------------------------------------------------------------------AGAAGAA-CG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000000000000000000000000000000000000000000000000000000000000
..TCATGAAGAGTCGCGATG-------------------------------------------------------------------AGAAGAA-CGAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3111.001000000000000000000000000000000000000000000000000000000000010000
.....TGAAGAGTCGCGATG-------------------------------------------------------------------AGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
............TCGCGATG-------------------------------------------------------------------AGAAGAA-CGAAGATGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
...................G-------------------------------------------------------------------AGAAGAA-CGAAGATGGCAGCGA-----------------------------------------------------------------------------------------------------------------------------------------------CC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................AGAA-CGAAGATGGCAGCGA-----------------------------------------------------------------------------------------------------------------------------------------------CCAAGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
ATTCATGAAGAGTCGCGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000001
...........................................................................................GAA-CGAAGATGGCAGCGA-----------------------------------------------------------------------------------------------------------------------------------------------CCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................AAGAA-CGAAGATGGCAGCGA-----------------------------------------------------------------------------------------------------------------------------------------------CC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
...................................................................................................GATGGCAGCGA-----------------------------------------------------------------------------------------------------------------------------------------------CCAAGAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
................GATG-------------------------------------------------------------------AGAAGAA-CGAAGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................A-CGAAGATGGCAGCGA-----------------------------------------------------------------------------------------------------------------------------------------------CCAAGAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
..............GCGATG-------------------------------------------------------------------AGAAGAA-CGAAGATGGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AAC---------------------------------------------A----------AAC------AACAAGAACAA-------------------------CAA------C................................................................................................................................................................................................................................2220.501000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------CAGCA------------------TCATCAACAGCA..............................................................................................................................................................................................1920.501000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------CAGCA------------------TCATCAACAGC...............................................................................................................................................................................................1820.501000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------------------A----------AAC------AACAAGAACAA-------------------------CAA------CA...............................................................................................................................................................................................................................2130.331000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................A---------ACAACAACAACAACAAC---------------------------------------------..................................................................................................................................................................................................................................................................................................18200.051000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------AATAATAAT---GATA------ATGATAATG..............................................................................................................................................23200.051000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAAC---------------------------------------------A----------AAC------AACA..........................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
CTTCATGAAGAGTCGCGATG-------------------------------------------------------------------AGAAGAA-CGAAGATGGCAGCGA-----------------------------------------------------------------------------------------------------------------------------------------------TCAAGAGCGTAAGT---AGCATAGCTCCAGGGCG-----------TGGCATTCAACCAAACAGAAAATCTATTGAAAAC------GAGATTAACGCGTTAA---T--------CCA------G-------CATTTCAAC---------------------------------------------A-----------ACAACAACAACAACAACTA-------------------------C--TACTACT------------------------------------------------------------------AACAACAACAATTATTACAATAA------TA------ACA---------ACAACGACAACAATAGCATC---------------------------GAGAACAAACAGTT-------GTG--AAAAATCTT--GA--------GCA------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................GATGGCAGCGA-----------------------------------------------------------------------------------------------------------------------------------------------TCAAGAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
....................................................................................................ATGGCAGCGA-----------------------------------------------------------------------------------------------------------------------------------------------TCAAGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501000010
droGri2
GAA------GAGTCGCGACG-------------------------------------------------------------------AGAAGAA-TGAAGATGGCAGTGA-----------------------------------------------------------------------------------------------------------------------------------------------CCAAGAGCGTAAGT---AGAAAAGCGCCAACGTC--------AACTGATGTCCGACCAA--------------------------------------------------------------AAAAAAAAA-----------------------------------------------------------------------AACAGCATTATGTA-------------------------TAA------TAACAACAACAACAATAAGAACAACAACAACAGCAAT------------------------------------------AAGAGCAACAG------CA------ACA---------GCAATAAGAACAACAAGAAT---------------------------A--------------------GCGTC-----------------------A------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................................................................GATGGCAGTGA-----------------------------------------------------------------------------------------------------------------------------------------------CCAAGAGCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
...........................................................................................GAA-TGAAGATGGCAGTGA-----------------------------------------------------------------------------------------------------------------------------------------------CCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------------TAA------TAACAACAACAACAATA................................................................................................................................................................................................................21190.05110
droWil2
ACG-------AAG------A-ACTTTAAC----------------------------------------------------------ATGAAAAATCTATTGAAAGATAA---------------------C-------------CAAATAA----------------------------------------------TGCA--------------------ATTGACAA----GAGAAATTGGTTTAACAGTTGATTTGGAAA--------------------------------------------------------------------------------------------------------------------------CGCAAC---------------------------------------------A------------------------------------------------------------------ACAACAACCACAACAACAACAGCAACTACAACTAT---------------TAAAATAATAATAATAAAATTAAT------------------------------------------AATGATAAGAATAGCAAC---------------------------AAAAGCCACTGAATAGCAACAGCATG------------A--------ACA------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
AAA-------AGACGAAAGG-------------------------------------------------------------------GAAAAAA-TGCCAATGGCAG--A-----------------------------------------------------------------------------------------------------------------------------------------------CGAGACGCAAACGC---AGCGACGCCGCCACGCA--------AAGA------------------------------------------A--ATAGTAATCA-------------------AAACAAAATAAAAATCATT---------------------------------------------A-----------A---------------AAT-------------------------TCA------TAAAAAA----------AAGACAGCGACTACAACAAC---------------AAGA------------------AC---AACAACAACAA------CA------ACA---------ACAACGATAAGAGCAACAAC---------------------------A--------------------ATT------------------TTAAAGTT------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAC---------------AAGA------------------AC---AACAACAACAA------CA------ACA---------.............................................................................................................2740.2510100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAC---------------AAGA------------------AC---AACAACAACAA------CA------.........................................................................................................................2450.2010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAC---------------AAGA------------------AC---AACAACAACA........................................................................................................................................21110.0910010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---------------AAGA------------------AC---AACAACAACAA------C................................................................................................................................21120.0810100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAC---------------AAGA------------------AC---AACAACAAC.........................................................................................................................................20140.0710100000000
droPer2
AGA-------GAC------AATGCTGCCG-----------------------------------------------------------------------GCGGCGGGCA---------------------CCAACAGCAACAATCAGA-----------------------------------------------------------------------------------------------------------------------------------CGA--------------------------------------------------------------------------------------------------CACAGATCAAC---------------------------------------------A-----------ACAACAACAACAACAACAA-------------------------CAACAACAACAACA------------------------------ACAACAACAACAACAACAACAACAAATACAACAATAGCAAC------AAAGGGAA------AAATCAAAATG---------TCAAGAACAACAACAATAAC---------------------------A--------------------GCAAAAAGAATCCTGGCA--------ACA------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................CAACAATCAGA-----------------------------------------------------------------------------------------------------------------------------------CGA--------------------------------------------------------------------------------------------------CACAGATC..................................................................................................................................................................................................................................................................................................................................................2212.002200000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------TCAAGAACAACAACAAT............................................................................................1811.001100000
..........GAC------AATGCTGCCG-----------------------------------------------------------------------GCGGCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...........................................................................................................GCA---------------------CCAACAGCAACAATCAGA-----------------------------------------------------------------------------------------------------------------------------------CGA--------------------------------------------------------------------------------------------------C.........................................................................................................................................................................................................................................................................................................................................................2511.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC------AAAGGGAA------AAATCAAAATG---------TCAAG........................................................................................................2711.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAACAACAACAA.....................................................................................................................................................................23200.051010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------ACAACAACAACAACAACAACAA........................................................................................................................................................................23200.051010000
....................................................................................................................................................................................................................................................................................................................................................................................................CAAC---------------------------------------------A-----------ACAACAACAACAACAACAA-------------------------CAAC......................................................................................................................................................................................................................................28200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA------------------------------ACAACAACAACAACAACAA...........................................................................................................................................................................23200.051010000
droAna3
AGA-------AGA----CCA-----------------------------------------------------------------------------ACAACAACAACAACAATAA-------------------------------G----TATCAGAATCAGAAGCAATAAGTGAGCTGCAAAAAATATTCAACAACAAAATCAACAACAAAA--------------------------------------------------------------TGTCAAC---------------CATGTT-----------------------------------------------------------------------------------C-----------------------------------------------------------AACAACAACAGCAACAACAA-------------------------CAA------CAACA------------------------------------------ACAACAACAACAACAACAACAACAACAACAACAACAACAGCAA------CA------GCA---------ACAGCAACAGCAACAACAAC---------------------------A--------------------ACAACAAACACCAA--TA--------GTA------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................ATCAGAAGCAATAAGTGAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
....................................................................................................................................................................................................................AAA--------------------------------------------------------------TGTCAAC---------------CATGTT-----------------------------------------------------------------------------------C-----------------------------------------------------------AAC....................................................................................................................................................................................................................................................................................2011.001100000
......................................................................................................................................................................................................................................................................................GTCAAC---------------CATGTT-----------------------------------------------------------------------------------C-----------------------------------------------------------AACAACA................................................................................................................................................................................................................................................................................2011.001001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAGCAA------CA------GCA---------AC...........................................................................................................2450.201010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAA------CA------GCA---------ACAGCAAC.....................................................................................................22200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------GCA---------ACAGCAACAGCAACAAC............................................................................................22200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAACAACAACAACAAC..................................................................................................................................................28200.051010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA------CAACA------------------------------------------ACAACAACAACAACAACAAC..............................................................................................................................................................28200.051010000
...................A-----------------------------------------------------------------------------ACAACAACAACAACAATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAA-------------------------CAA------CAACA------------------------------------------ACA...............................................................................................................................................................................20200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------------------------------ACAACAACAACAACAACAACAACAAC........................................................................................................................................................28200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAACAACAGCAA------C................................................................................................................................24200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAACAGC.........................................................................................................................................19200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAACAACAACAACAAC...............................................................................................................................................28200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAA------CA------GCA---------ACAGCAACAGC..................................................................................................23200.051010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAACAACAACAACAAC............................................................................................................................................28200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAACAACAACAACAAC.....................................................................................................................................................28200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAA-------------------------CAA------CAAC.............................................................................................................................................................................................................................21200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAA-------------------------CAA------CAACA------------------------------------------..................................................................................................................................................................................22200.051010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA-------------------------CAA------CAACA------------------------------------------ACAACAACAAC.......................................................................................................................................................................24200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---------ACAGCAACAGCAACAACA...........................................................................................21200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAA-------------------------CAA------CAACA------------------------------------------ACAACAA...........................................................................................................................................................................21200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAA------CA------GC.......................................................................................................................19200.051010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAACAACAA-------------------------CAA------C................................................................................................................................................................................................................................22200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------------------------------------------ACAACAACAACAACAACAACAAC...........................................................................................................................................................28200.051010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAACAACAACAACAGC.........................................................................................................................................26200.051010000
droBip1
ACA-------AAA----AAA-------------------------------------------------------------------------A-CA---ACAACAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---A-------A---------A---------TTACAA---------------------------------------------AAACAACAACG-ACG------AACAAAAACAA-------------------------CAA------CAAAA------------------------------------------ACAACAACAACAATAAAAATTACAACAACAACAACAAAAATTA------CA------ACA---------ACAACAACAAAAATTACAAC---------------------------A--------------------ACAACA--------------------AAC------------SizeHit CountTotal NormTotal
No Reads
droKik1
GAT-------GAG------A-GGCGCAACAACGATATACAGTAATCTAGTGCTTGT-CAAA---------------------------------------------------------------------------------------------------------------------CTGCAGAGCCTTATTAAAACTAACTCCAACATCAAAATGTTGCAAATGCCAA----A--------------------------------------------------------------------------------------------------------------------------------------------ACAAAAAC------------------------------------------------------------------------AAACTAGGAGAGG-------------------------CAA------CAGCAACAAAAACAACAGCAGCATCAACAACAGCAAT------------------------------------------AACAACAACAA------CA------ACA---------GCAACAATAAAG----CGCCGTTTCAACGTCGCAAAATTACAACGATA---ACA--------------TAAGC---AATCCGAGCG--------AGATAGAGTTTAGAGSizeHit CountTotal NormTotal
No Reads
droFic1
GTG-------AC-------GAGGCGGGCG------------------------------------------------------------------------AGGCGGTTA---------------------CCAAAAGCAT---------------------------------------------------------------------CACCGAGTTGCGAGTGCCGACCATA-------------ACGA-CCACAAAC----------------------------------------------------------------------------------------ATCAG---CAACAGCA-GCA------G------------CAA---------------------------------------------CAT--------CTACAGCAACAGCAACAGCAG-------------------------CAA------CAGCA------------------------------------------ACATCAACAGCAGCAATACGAACAACAGCAGCAACAGCAACAC------AA------ACA---------ACAACAACAACAACAACAAT---------------------------A--------------------GCAAC----------------------------------AASizeHit CountTotal NormTotal
No Reads
droEle1
GAG-------CAGCA-------------------------------------------------------------------------------------GCAGCAGC-------------------CC-TC----------------------------------------------------------------------------------------------------------------------------------------------------CAGTCCCGCTTTGGCAGT-------C-----------------------------------A--GTGGCAATAA-------------------CAACAACAACAATGCCAGC---------------------------------------------G-----------G----------------------------------------------------TAGCA---------------------------------------------ACAACAACAACAACAGCGGCAGTAGCAACAACAACACCAG------CA------GCA---------GCAACAATAATAATAACGAT---------------------------A--------------------ATGATG---------------CACATGTT------------SizeHit CountTotal NormTotal
No Reads
droRho1
GAG-------CTG------A-GGCAGCAGAAGGAGCTACAGT--TCCTGGACATGTTGCATCAGCAGCAGGCGCAACATCAGCAACAGGCGCAA-CAACAGCT------------------------------------------------G----------------------------------------------CTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAG---------------------------------------------CAA--------CAACAACGACAGCAGCAGCAG-------------------------CAA------CAACA------------------------------------------ACAACAACAACAACAACAACAACAACAACAACAACAACAACAA------CA------ACA---------ACAACAACAACAGCATCAAC---------------------------A--------------------GCATC----------------------------------AASizeHit CountTotal NormTotal
No Reads
droBia1
GAT-------AAT------AAGAACGATA-----------------------------------------------------------------------ACAGCGAC-A------------------TAAC----------------------------------------------------------------------------------------------------------------------------------------------------TAGTAACATTAAGGAAAA-------A-----------------------------------G--GAGGCATCAT-------------------CAACAACAACAGTAACAACGACGACGACGACAACAACAACAATAACGATAACGATAACGATAACAA--------TAATAGCAATAATAATAATAA-------------------------CAA------TAATA------------------------------------------ATAATAACAATAATAATAATAACAATAATAATAATAACAATAA------TA------ATA---------ACAATAATAATAACAATAAC---------------------------A--------------------ACAAC----------------------------------AASizeHit CountTotal NormTotal
No Reads
droTak1
CAA-------CAACGACAAC-------------------------------------------------------------------ATCAAAG-CTTTGATGGCGGCGCCAAAGCCAAACGGCGA------------------------------------------------------------------------------------------------------------GGC-------------------------------------------------------------------------------------------------------AG--AGCGCCCCACAAGCAACAACT-GCAACAATAACAACAACAATTGCAGC---------------------------------------------A-----------GCAGCAA-------------------------------------------------------------------------CAACAACAAT------------CACAGCGATGACAATGAAACCGGCAGCAACAACAACAATAA------CA------ACA---------ACAATGACAACAGCAACA--------------------------------------------------ACACCAG---------CAGTTGCAATGTC------------SizeHit CountTotal NormTotal
No Reads
droEug1
GCG-------GCC------A-CGTGCAAC---------------------------------CCCAGCAAGTGCAACAAGTGCAATTCTCACAA-CAACAACA------------------------------------------------G----------------------------------------------CCAC---------------------------------------------------------------------------------------------------------------------------------------------------TGCAA---C-------A---------ATAATAATAATACC------------------------------------------------AT--------CAATAATAATAATAATAATAA-------------------------CAA------CAACA------------------------------------------ACAATAATAATAATAATAATAATAATAAT------AATAATACAAGCAGCA------ATA---------CCAACAACAACAACAACAAC---------------------------A--------------------ACAAT----------------------------------AASizeHit CountTotal NormTotal
No Reads
dm3
AAT-------AGTTGTAGTC-------------------------------------------------------------------GAAAGAA-CAACAATGGCGGCAATGAAAGTGAGCAACATGTG-GC----------------------------------------------------------------------------------------------------------------------------------------------------CAGTTCG------------------------------------GCGGAGGAC------GATG--ATTGCGCCAA---C-------A---------ACAATACAAATACCAGC---------------------------------------------A-----------ATAACAACAATACCAGCAA-------------------------CACCGCCACCAGCA------------------------------ACACGA------ACAACAACAATAATAATAACA------GCAGCAGCGGCAACAG------CGAGAAGCGCA---------AGAAGAAGAACAATAACAAC---------------------------A--------------------ACAAC------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCGCA---------AGAAGAAGAA...................................................................................................1924.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001020000000000000000000000000100000000000000000000000000000000000000000000000000010000000000000100000000000000000110000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCGCA---------AGAAGAAGA....................................................................................................1833.67110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000302000000000000000000000000001000000000001000000000000000000000000000000000000000001000000000000100000000000001000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGCA---------AGAAGAAGAAC..................................................................................................1923.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000110000000
.............................................................................................................................................................................................................................................................................................................................................................................A---------ACAATACAAATACCAGC---------------------------------------------A-----------ATAACA................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGCA---------AGAAGAAGAA...................................................................................................1832.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCA---------AGAAGAAGAAC..................................................................................................1821.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCGCA---------AGAAGAAGAAC..................................................................................................2021.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------AGAAGAAGAACAATAACAAC---------------------------A--------------------AC.......................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AAT-------AGTTGTAGTC-------------------------------------------------------------------GAAAGAA-CA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.................................................................................................ACAATGGCGGCAATGAAAGTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA-------------------------CACCGCCACCAGCA------------------------------ACACGA------..................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AT-------AGTTGTAGTC-------------------------------------------------------------------GAAAGAA-CAACAATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..T-------AGTTGTAGTC-------------------------------------------------------------------GAAAGAA-CAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAATAATAACA------GCAGCAGT...............................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------------------------CACCGCCACCAGCA------------------------------AC............................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................ATGGCGGCAATGAAAGTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................C------GATG--ATTGCGCCAA---C-------A---------A...............................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................ATGTG-GC----------------------------------------------------------------------------------------------------------------------------------------------------CAGTTCG------------------------------------GCGGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------------------A-----------ATAACAACAATACCAGCAA-------------------------CACCG.....................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAATAATAATAACA------GCAGCAGCG..............................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................TGAAAGTGAGCAACATGTG-GC----------------------------------------------------------------------------------------------------------------------------------------------------CAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................GAAAGTGAGCAACATGTG-G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACAG------CGAGAAGCGCA---------AGA..........................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
.............................................................................................A-CAACAATGGCGGCAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TGTG-GC----------------------------------------------------------------------------------------------------------------------------------------------------CAGTTCG------------------------------------GCGGAGGA............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGTAGTC-------------------------------------------------------------------GAAAGAA-CAACAATGGCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................AACATGTG-GC----------------------------------------------------------------------------------------------------------------------------------------------------CAGTTCG------------------------------------GCGGA...............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................G--ATTGCGCCAA---C-------A---------ACAATAC.........................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................C-------------------------------------------------------------------GAAAGAA-CAACAATGGCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TTCG------------------------------------GCGGAGGAC------GATG--ATTGCGC........................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCA---------AGAAGAAGAA...................................................................................................1730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA------GCAGCAGCGGCAACAG------.................................................................................................................................2050.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAATAATAATAACA------.......................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCGCA---------AGAAGAAG.....................................................................................................1780.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------ACAACAACAATAATAATAA...............................................................................................................................................................20160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GTC-------GC----AACC-------------------------------------------------------------------GCAACAA-CAAC------AACAA-----------------------------------------------------------------------------------------------------------------------------------------------CCTGAACCGCCAGCAGCAGAGA--CGTCG---------------------------------------------------------------TCGCCCTGG---C------------------------------------------------------------------------------------------------------------AACAACAACAACAACAACAACAGGCGACGCCT----CAACAACAA------------------CAACAACA--------------------------------A------GC---AGCGACAGCAG------CA------ACA---------CCACCGTCAGCAGCAACAAC---------------------------A--------------------ACAAC-----------------------G------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................GAGA--CGTCG---------------------------------------------------------------TCGCCG........................................................................................................................................................................................................................................................................................................................................................................................15200.05100000001000000000
droSec2
AAA-------AAA----ATT-------------------------------------------------------------------ACGATAA-T-------------------------------------------------AAAATAA----------------------------------------------TAAG---------------------------------------------------------------------------------------------------------------------------------------------------AATAA---TAATA-------------A---TAAT---AATAA---------------------------------------------TAA--------TAATAATAATAATAATAATAA-------------------------TAA------TAATA------------------------------------------ATAATAATAATAATAATAATAATAATAAT------AATAATAA------TAATAATAATA---------ATAATAATAATAATAATAAT---------------------------A--------------------ATAATA---------------TGTGTCCT----------AASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AAA-------AAT------A-ATAATAAT----------------------------------------------------------------------------A----------------------------------------------------------------------------------------------AT---------------------------------------------------------------------------------------------------------------------------------------------------AATAA---TAATA-------------A---TAAT---AATAA---------------------------------------------TAA--------TAATAATAATAACAATAATAA-------------------------TAA------CAATA------------------------------------------ATAATAACAATAATAATAACAATAATAATAATAATAATAATAA------TA------ATA---------ATAATAATAATAATAATAAT---------------------------A--------------------ATAAT----------------------------------AASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AAT-------AGTTGTAGTC-------------------------------------------------------------------GAAAGAA-CAACAATGGTGGCAATGAAAGTGAGCAACATGTG-GC----------------------------------------------------------------------------------------------------------------------------------------------------CAGTTCA------------------------------------GCGGAGGAC------GATG--ATTGCGCCAA---C-------A---------ACAATACGAATACCAGC---------------------------------------------A-----------ATAACAACAACACCAGCAG-------------------------CACCGCCACCAGCA------------------------------AC---------------ACGAACAAC---AACAACAACAAT---------AATAA------TA------GCA---------ACAATAACAACAACAACAAT---------------------------A-----------ACAACAACAGCAGC------------A--------GCG------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................ACAATGGTGGCAATGAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001000
..............................................................................................................................GTG-GC----------------------------------------------------------------------------------------------------------------------------------------------------CAGTTCA------------------------------------GCGGAGGAC------GAT..................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAT---------------------------A-----------ACAACAACAGC.......................................18180.0610100000

Generated: 05/17/2015 at 03:55 AM