ID:

dvi_18792

 Coordinate:

scaffold_13049:7307537-7307687 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.1 -7.6

Flybase annnotation

exon [dvir_GLEANR_12241:3]; CDS [Dvir\GJ12262-cds]; intron [Dvir\GJ12262-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAACAAAAAAAAAAATATTGAATTTATAACTTTAACAAAAAAAAAAAACACACACACACATAAGTTTCTGTTTTTGTTTATAGTTCTTGAGTATGTATTGAGAAACAAAAAAAAAAAAAATCAAACAAACATATTAATTGGAAAATGTGTTTAACATATTGATAACTTCTTCAATTTTCAAAACAAAAATCACGCAAACAGACGTTGACGATGTCAAGTTTGTGATCAATTATGATTATCCTTCGAACTCG
************************************************************************************************************************.............((............(((((.....(((((........))))).....)))))..............))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060679
140x9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 M028
head
 SRR060654
160x9_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060688
160_ovaries_total
 SRR1106727
larvae
 M061
embryo
 V047
embryo
 SRR060682
9x140_0-2h_embryos_total
 SRR060678
9x140_testes_total
......................................................................................................................................................................................ACAAAAATCACGCAAACAG.................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................TCAAACAAACATATTAATTGGAAAATGT....................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................TTATAGTTCTTGAGTATGTATTGAGA.................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CAATTATGATTATCCTTCGA..... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GATGTCAAGTTTGTGATCAATT.................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GTTGACGATGTCAAGTTTGTGAT......................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TATGATTATCCTTCGAACT.. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................CAAAAATCACGCAAACAG.................................................. 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TATGATTGTCCTTCGAACT.. 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATGTCAAGTTTGTGATCAATTATGA................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................AATGTGATTAACATATTGA......................................................................................... 19 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................GTAATGAGAAACAAAAAAAAAAA...................................................................................................................................... 23 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................TTTAACAAAAAAAAAAAAC.......................................................................................................................................................................................................... 19 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TATAGCTTTATCAAAAAAAAAA............................................................................................................................................................................................................. 22 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................TATTGGGAACCAAAAAAAAA........................................................................................................................................ 20 2 20 0.10 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0
........................TATACCTTTACCGAAAAAAAAAAA........................................................................................................................................................................................................... 24 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...............................................................................................TATTGGGGAACCAAAAAAAAAAAA.................................................................................................................................... 24 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TATTGAGTCACACAAAAAAAAAA..................................................................................................................................... 23 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ATTGTTTTTTTTTTTATAACTTAAATATTGAAATTGTTTTTTTTTTTTGTGTGTGTGTGTATTCAAAGACAAAAACAAATATCAAGAACTCATACATAACTCTTTGTTTTTTTTTTTTTTAGTTTGTTTGTATAATTAACCTTTTACACAAATTGTATAACTATTGAAGAAGTTAAAAGTTTTGTTTTTAGTGCGTTTGTCTGCAACTGCTACAGTTCAAACACTAGTTAATACTAATAGGAAGCTTGAGC
**************************************************.............((............(((((.....(((((........))))).....)))))..............))************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR060678
9x140_testes_total
 SRR060674
9x140_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 SRR060675
140x9_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060689
160x9_testes_total
 SRR060655
9x160_testes_total
 V116
male body		 V047
embryo
 SRR060670
9_testes_total
.............................GAAAGTGTTTTTTTTTTGTGTGTGTGT................................................................................................................................................................................................... 27 2 3 5.00 15 3 0 0 5 4 0 3 0 0 0 0 0
.............................................................................................................................................................................................................ACTGCTACAGTTCAAACACTAG........................ 22 0 1 3.00 3 0 0 2 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................CAACTGCTACAGTTCAAACACTAG........................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................TGAAAGTGTTTTTTTTTTGTGTGTGT..................................................................................................................................................................................................... 26 2 3 1.00 3 0 0 0 1 1 0 0 0 1 0 0 0
...............................................................................................................................................................................................................TGCTACAGTTCAAACACTAG........................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................AAGTGTTTTTTTTTTTTGTGTGTGT................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................GAAATTGTTTTTTTTTTGTGTGTGTGT................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.............................GAAAGTGTTTTTTTTTTTTTTGTGTGTGT................................................................................................................................................................................................. 29 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
................................AGTGTTTTTTTTTTTTGTGTGTGT................................................................................................................................................................................................... 24 1 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0
...............................AATTTTTTTTTTTTTTTGTGTGTGT................................................................................................................................................................................................... 25 1 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................TGTATCACTAGTGAGGAAG............................................................................... 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................AAAAAAATATCGGGAACTCAT.............................................................................................................................................................. 21 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................TGTGAAAGTGTTTTTTTTTTTTGTGT....................................................................................................................................................................................................... 26 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTGTTTTTAGTTCGTTTG.................................................... 18 1 13 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................TTGTTTTTAGCGCGTTTGA................................................... 19 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0
..................................TGTTTTTTTTTTTTTTGTGTGTGTTTAT............................................................................................................................................................................................. 28 2 19 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
.....................................TTTTTTTTTTTGTGTGTGTGTG................................................................................................................................................................................................ 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................TTTTTTTTTTTTGTGTGTGTGT................................................................................................................................................................................................. 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
...........................................TTTTTGTGAGTGTGTGTAAT............................................................................................................................................................................................ 20 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:7307487-7307737 - dvi_18792 TAA----CAAAAA---AAAAAATATTGAATTTATAACTTTAACAAAAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------AACACACACACACATAAGTTT-CTGTTTTT-GTTT--ATAGTT-CTTG--------------------------------------AGTATGTA----TTGAGA--AACAAAAAAAAAAAAAATCAAACAAACATATT------------------------AATT--------------GGAAAATGTGTTTAACATATTG-AT--AA-------CTTCTTCAATTTTCAAAA------------------CAAAAA-TCA-----------------------------------CGC----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAATTATGATTATCCTTCGAACTCG
droMoj3 scaffold_6680:5564457-5564704 - TAG----CAACAAACAAAAAATTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA------TTAAAAAAAAAAAAAAAAGACACACACACAATGAATA----------AAACACACACATAAGTTT-CTGTTTTT-GTTT--ATAGTT-CTTG--------------------------------------AGTATGTA----TTGAGA--A---------------------------TATTAAAGA-------------------GAAA----CGTATAATTTGTAAAACATGTTTAACATA----TTCATA------ACTTCTTCAATTTTCAAA-------------------TCGAAA-CGCA-----------------------------------------------AAACAGACGTTGACGATGTCAAGTTTGTGATCAATTATGATTATCCTTCCAACTCG
droGri2 scaffold_14446:4359-4578 - TAG----CAAAAG---A---------------------------A---AAAAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAA--TATC-CACAAAA--------------------------------------------------AACCACACACATAAGTTT-CTGTTTTT-GTTT--ATAGTTCTTTG--------------------------------------AGTATGTATATTTTGAGA--AAAT--------------------ATATAATTTG-----------------------------------------TAAAATGTGTTTAACATATTG-AT--CA-------CTTCTTCAATTTTCAAAT------------------C-ACGA-----------------------------------TAATACG----------AAACAGACGTTGACGATGTCAAGTTTGTTATCAATTATGATTATCCTTCGAACTCG
droWil2 scf2_1100000004729:739834-740258 - TAA----AAAAAA---A---------------------------A---CGAGAAAAGAATCCATTTAAAGTATTTTTAAGTTTTATCCCACAAAT------------------CGACACAC-----ACA----AACT-CA--C---------------ACGTACATAGAAAAATATGCATAC--------ACTCC--AACATCA---------------------ACACAAA----------------------------------------C----ACATACAAAAACACATAAATTA-ATGTTTTC-GTTA-AATAGTTTTTAAACTTTTGTTTTTTTTTTTTTTTACTTTTTTATTTTTGAAGTACATA---TTTGAGA--AAGA--------------------TTGTTTCTTCCGT------------TTAATTCGACTGAAAGATATATTTTT-----TG-TGTTAACATTTTT-ATCAAA-------CTTCTTCAATTTTCAAATTATATATATCGTATCGAATCGAAT-CGAA-----TTATACG-AATTACGATCATACAAATCGAATCAAACAATAA-ACACAGATGTTGACGATGTCAAGTTTGTTATCAACTATGATTATCCTTCGAACTCG
dp5 XR_group8:4967497-4967815 + CAA----TTA-------------------------------ACCA---A-------------------------------------CACACTT----------------------ACACAC-----ACA----TACA-CA--CACTATGTACACTCGAACGGACACA---ACAAATACACAC--------AC------ACAGAA------ATAGACTA----------TAA-----------------------------------------C----ACACACACACATGAATAAGTTT-CCGTTTTT-GTTA-AATAGTTTTTTG--------------------------------------AGTAAATA----TTGAGA--AAGA--------------------ATCCTATTTTCGCC--CCCGCATA-TTGGAAAGATT-----------------CGATATTTTTAACATTTTCTTTCATA-------CTTCTTCAATTTTCAAAT------------------TCGAAA-TGAA-----AAATATA----------------AATGAAATG---AAATGA-AAACAGACGTTGACGATGTCAAGTTCGTTATAAACTACGATTATCCTTCGAACTCT
droPer2 scaffold_9446:891-1137 - A----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATAACACACACACA-----------------------------------------------------------------------------------------C----ACACACACACATGAATAAGTTT-CCGTTTTT-GTTA-AATAGTTTTTTG--------------------------------------AGTAAATA----TTGAGA--AAGA--------------------ATCCTATTTTCGCC--CCCGCATA-TTGGAAAGATT-----------------CGATATTTTTAACATTTTCTTTCATA-------CTTCTTCAATTTTCAAAT------------------TCGAAA-TGAA-----AAATATA----------------AATGAAATG---AAATGA-AAACAGACGTTGACGATGTCAAGTTCGTTATAAACTACGATTATCCTTCGAACTCT
droAna3 scaffold_13337:19960847-19961143 + TAA----CAAAC--------------------------TTAACTAAACAAACAAACA---------------------------ATCGCACCA----------------------A-----------------------------------------------------------------------------CTGAGACAGAA------CTGACCACATAAC-CACACAA-----------------------------------------T----ACACACACACAAAAATAAGTTT-TCGTTTTT-GTTA-AATAGTTTTTTG--------------------------------------AGTAACTT----TTGAGATAAAGA--------------------TTCCTATTCTTGACTTTTC--GCATTTGAGTCGATT-----------------CGATATTTTTAACATTTCTTTTCAAA-------CTTCTCCAATTTCCA-AT------------------TCACAA-TCAA----AAAATATA----------------AATCAAATG------TG--AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTATGATTATCCTTCGAACTCG
droBip1 scf7180000396529:448475-448793 - CAATTAACAAAC--------------------------TTAACTAAACAAACAAACA---------------------------ATCGCACCA--A-------------------ACA---------------CC-----------------------------------------------------AGACACCCCGACAGAA------CCGACCAC--A-------TAAACA--------------------------CCTAATTACCTAC----ACACACACACAAAAATAAGTTT-TCGTTTTT-GTTG--ATAGTTTTTTG--------------------------------------AGTAACTT----TTGAGATAAAGA--------------------TTCCTATTCT-GACTTGTC--CCC-CTGCATCGATT-----------------CGATATTTTTAACATTTCTTTTCACA-------CTTCTTCAATTTCCAAAC------------------TCCAAACTGAAAATAAAAACATA----------------AATCAAATG----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTACGATTATCCTTCCAACTCG
droKik1 scf7180000302510:687916-688245 - CAA----CCAAAG-------------------------TCAA------------CGA---------------------------ATCGCACTC--AACACA--------------A-----------------------------------------------------------------------------CATAGACAGACCCCACAACTGACACACACTATACA------TTACACACACTACACACACACACA--------------CACACACACACACACAAAAATAAGTTT-TCGTTTTTCGTTA-AATAGTTTTTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTTGACAT-----GCA-TTGGATCGATT-----------------CGATATTTTTAACATTTCTTTTCACACTCTCCAATTCTCCAATTTTCAAAT------------------TCGAAA-TGAAATC--AAATTTAA---------------AACGAAATG---ATC-GTGATCTAGACGTTGACGATGTCAAGTTTGTGATCAACTACGATTATCCTTCGAACTCC
droFic1 scf7180000453929:653157-653459 + AAA----CAAAAA---A---------------------------A---AAAAAAAGA---------------------------ATCGCACAG----------------------ACACGA-----ATT----CC----------------------------------AGCTCACCTACAC------TAACACCAAGACAGTA------TCGGACA--CACT-CACACAAACA--------------------------------------T----ACACACACACACAAATAAGTTT-TTGTTTTT-GTTG-AATAGTTTCTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAC-------A-A-TTGGTTCGATT-----------------CGATATTTTTAACGCTTCTTTTCACA--------TTCTTCAATTTCCAAAT------------------TCGAAA-TGAA-----AAATATA----------------ATTGAAATC----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTATGATTATCCTTCGAACTCG
droEle1 scf7180000491193:1809447-1809766 - TAA----CAAAG--------------------------TTAAC-A---ACACAAATG---------------------------ATCGCCCCGAT---------------------CATAA-----ACA----------------------------------AATACCATAACACGTACACACACACGCACACGAAGACAGAA------CCGGACA--CAAT-CACACAAACC---------------------------------ACCAA-----A---CCACACACAAATAAGTTT-TTGTTTTT-GTTG-AATAGTTTCTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAC-------GCA-TTGGTTCGATT-----------------CGATATTTTTAACGCTTCTTTTCACA-------CTTCTTCAATTTCCAAAT------------------TCGAAA-TGAA-----AAATATA----------------AATGAAATC----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTATGATTATCCTTCGAACTCG
droRho1 scf7180000780183:65714-66019 - TAA----CAAA---------------------------------------ACAAATG---------------------------ATCTCACCGAT---------------------CA------------------TTA--AC-------------------CAACACCATTACACGTACACAC----ACACACCAAGACAGAA------TCGGACA--CACT-CACACAAACC---------------------------------ACTA---------AACACACACAAATAAGTTT-TTGTTTTT-GTTG-AATAGTTTCTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAC-------GTA-TTGGTTCGATT-----------------CGATATTTTTAACGCTTCTTTTCACA-------CTTCTTCAATTTCAAAAT------------------TCGAAA-TGAA-----AAATATA----------------AATGAAATC----------AAACAGACGTTGACGATGTCAAGTTTGTAATCAACTATGATTATCCTTCGAACTCG
droBia1 scf7180000302193:4512416-4512722 - TAA----CAAAC--------------------------GTACCCA---AACCAAATG---------------------------ATCGCACCG----------------------ACACGC-----ACA----CC----------------------------------ACCACACGAACAC------CCACACCACGACAGAC------ACGGACACACACT-AACATAA-----------------------------------------C----CCCCACACACACAAATAAGTTT-TCGTTTTT-GTTG-AATAGTTTCTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAC-------GTA-CTGCTTCGATT-----------------CGATATTTTTAACGCTTCTTTTCACC-------ATTCTTCAATTT-CAAAC------------------TCGAAA-TGAA-----AAATATA----------------AATGAAATC----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTATGATTATCCTTCGAACTCG
droTak1 scf7180000415809:915099-915399 - TAA----CAAAC--------------------------TTAACCA---AAACAAATG---------------------------ATCGCACCG----------------------AAT---------------------------------------------------------CGAACAC------TCACACTAAGACAGAACAC---ACGGACA--CACT-AACATACACC------------------------------------TA-----ACATACACACACAAATAAGTTTTTCGTTTTT-GTTG-AATAGTTTCTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAC-------GCA-TTGATTCGATT-----------------CGACATTTTTAACGCTTCTTTTCACA-------CTTCTTCAATTTTCAAAT------------------TCGAAA-TGAA----AAAATGTA----------------ATTGAACTC----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTATGATTATCCTTCGAACTCG
droEug1 scf7180000409711:4505383-4505675 - TAA----CTAAA--------------------------TTAAC--------------------------------------------CCACTT--AATACTACATTGTAACACCGACA---------------------------------------------------------------C------ACACACTAAGACAGAA------ACGGACACACACTCTACA--------------------------------------------C----ACCTACACACACAAATAAGTTTTTTGTTTTT-GTTAAAATAGTT-CCTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAA-------ATA-TTGGTTCGATT-----------------CGATATTTTTAACGCTTCTTTTCACA-------CTTCTTCAATTTTCAAAT------------------TCGAAA-TGAA-----AAATATA----------------TTTGAAATC----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTATGATTATCCTTCGAACTCT
dm3 chr3L:6944496-6944805 - TAA----CAAGA--------------------------------A---AAACAAATG---------------------------ATCGCACCG----------------------ACACAA-----ACAA---CCACTAATAC-------------------CAATACCATGACATGAAAAC------ACACACCAAGACAGAA------ACGGACAC-CACT-CACACAA----------------------------------------------------GCACACAAATAAGTTTTTTGTTTTT-GTTA-AATAGTTTCTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAC-------GCA-TTGCTTCGATT-----------------TGATAATTTTAACGCTTCTTTTCACA--------TTCTTCAATTTTCAAAT------------------TCGAAA-TGAA-----AAATATT----------------ATTGAAATC----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTACGATTATCCTTCGAACTCG
droSim2 3l:6806529-6806839 - dsi_12177 TTA----CAAAAC---A---------------------------A---AAACAAATG---------------------------ATCGCACCG----------------------ACACAA-----ACA----CCACTAATAC-------------------CAATACCATGACATGAATAC------AAACACCATGACAGAA------ACGGACAC-CACT-CACACAA----------------------------------------------------GCACACAAATAAGTTTTTCGTTTTT-GTTG-AATAGTTTCTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAC-------GCA-TTGGTTCGATT-----------------TGATAATTTTAACGCTTCTTTTCACA--------TTCTTCAATTTTCAAAT------------------TCGAAA-TGAA-----AAATTTA----------------ATTGAAATC----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTACGATTATCCTTCGAACTCG
droSec2 scaffold_2:6871475-6871785 - TTA----CAAAAT---A---------------------------A---AAACAAATG---------------------------ATCGCACCG----------------------ACACAA-----ACA----CCACTAGTAC-------------------CAATACCATGACATGAATAC------AAACACCATGACAGAA------ACGGACAC-CACT-CACACAA----------------------------------------------------GCACACAAATAAGTTTTTCGTTTTT-GTTG-AATAGTTTCTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAC-------GCA-TTGGTTCGATT-----------------TGATAATTTTAACGCTTCTTTTCACA--------TTCTTCAATTTTCAAAT------------------TCGAAA-TGAA-----AAATATA----------------ATTGAAATC----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTACGATTATCCTTCGAACTCG
droYak3 3L:7527562-7527876 - TAA----CAAGA------------------------------------AAACAAATG---------------------------ATCGCACCAT-G-------------------ACACCACTACCATAACCACCAC---TAC-------------------CACTACAATGACACGAATAC------TCACACCATGACAGAA------ACGGACAA-CACT-CACACAA----------------------------------------------------GCACACAAATAAGTTT-TCGTTTTT-GTTG-AATAGTTTCTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAC-------GCA-TTGGTTCGATT-----------------CGATAATTTTAACGCTTCTTTTCACA--------TTCTTCAATTTTCAAAT------------------TCGAAA-TGAA-----AAATATA----------------ATTGAAATC----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTATGATTACCCTTCGAACTCG
droEre2 scaffold_4784:4414105-4414414 + TTA----CAAGA------------------------------------AAACAAATG---------------------------ATCGCACCG----------------------ACATCA-----CCA----ACAC---CAC-------------------CACTACAACGACACGAACACTCACACTCACACCAATACAGAA------ACGGACAC-CACT-CACACAA----------------------------------------------------GCACACAAATAAGTTT-TCGTTTTT-GTTG-AATAGTTTCTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAC-------GCA-TTGGTTCGATT-----------------CGATAATTTTAACGCTTCTTTTCACA--------TTCTTCAATTTTCAAAT------------------TCGAAA-TGAA-----AAATATA----------------ATTGAAATG----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTATGATTATCCTTCGAACTCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TAA----CAAAAA---AAAAAATATTGAATTTATAACTTTAACAAAAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------AACACACACACACATAAGTTT-CTGTTTTT-GTTT--ATAGTT-CTTG--------------------------------------AGTATGTA----TTGAGA--AACAAAAAAAAAAAAAATCAAACAAACATATT------------------------AATT--------------GGAAAATGTGTTTAACATATTG-AT--AA-------CTTCTTCAATTTTCAAAA------------------CAAAAA-TCA-----------------------------------CGC----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAATTATGATTATCCTTCGAACTCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------CAAAAA-TCA-----------------------------------CGC----------AAACAG..................................................1911.001000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TCAAACAAACATATT------------------------AATT--------------GGAAAATGT.................................................................................................................................................................................2811.001000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TT--ATAGTT-CTTG--------------------------------------AGTATGTA----TTGAGA--....................................................................................................................................................................................................................................................................2611.001000010000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTATGATTATCCTTCGA.....2011.001000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCAAGTTTGTGATCAATT....................2211.001000000000000001000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACGATGTCAAGTTTGTGAT.........................2311.001000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATTATCCTTCGAACT..1911.001000000000000000000000000000000000000000000000000000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAA-TCA-----------------------------------CGC----------AAACAG..................................................1811.001000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCAAGTTTGTGATCAATTATGA................2511.001000000000000000000000000000001000000000000000000000000000000000
.....................................TTTAACAAAAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------AAC...........................................................................................................................................................................................................................................................................................................................................................................1940.251000000000000000000000000000001000000000000000000000000000000000
droMoj3
TAG----CAACAAACAAAAAATTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA------TTAAAAAAAAAAAAAAAAGACACACACACAATGAATA----------AAACACACACATAAGTTT-CTGTTTTT-GTTT--ATAGTT-CTTG--------------------------------------AGTATGTA----TTGAGA--A---------------------------TATTAAAGA-------------------GAAA----CGTATAATTTGTAAAACATGTTTAACATA----TTCATA------ACTTCTTCAATTTTCAAA-------------------TCGAAA-CGCA-----------------------------------------------AAACAGACGTTGACGATGTCAAGTTTGTGATCAATTATGATTATCCTTCCAACTCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACGATGTCAAGTTTGTG...........................2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACGTTGACGATGTCAAGTTT..............................2311.001000010
....................................................................................................................................................................................................................................................................................................TAAGTTT-CTGTTTTT-GTTT--ATAGTT-..................................................................................................................................................................................................................................................................................................................................2511.001100000
..................................................................................................................................................................................................................................................................................................................................CTTG--------------------------------------AGTATGTA----TTGAGA--....................................................................................................................................................................................................................................................................1811.001100000
droGri2
TAG----CAAAAG---A---------------------------A---AAAAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAA--TATC-CACAAAA--------------------------------------------------AACCACACACATAAGTTT-CTGTTTTT-GTTT--ATAGTTCTTTG--------------------------------------AGTATGTATATTTTGAGA--AAAT--------------------ATATAATTTG-----------------------------------------TAAAATGTGTTTAACATATTG-AT--CA-------CTTCTTCAATTTTCAAAT------------------C-ACGA-----------------------------------TAATACG----------AAACAGACGTTGACGATGTCAAGTTTGTTATCAATTATGATTATCCTTCGAACTCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TAA----AAAAAA---A---------------------------A---CGAGAAAAGAATCCATTTAAAGTATTTTTAAGTTTTATCCCACAAAT------------------CGACACAC-----ACA----AACT-CA--C---------------ACGTACATAGAAAAATATGCATAC--------ACTCC--AACATCA---------------------ACACAAA----------------------------------------C----ACATACAAAAACACATAAATTA-ATGTTTTC-GTTA-AATAGTTTTTAAACTTTTGTTTTTTTTTTTTTTTACTTTTTTATTTTTGAAGTACATA---TTTGAGA--AAGA--------------------TTGTTTCTTCCGT------------TTAATTCGACTGAAAGATATATTTTT-----TG-TGTTAACATTTTT-ATCAAA-------CTTCTTCAATTTTCAAATTATATATATCGTATCGAATCGAAT-CGAA-----TTATACG-AATTACGATCATACAAATCGAATCAAACAATAA-ACACAGATGTTGACGATGTCAAGTTTGTTATCAACTATGATTATCCTTCGAACTCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................................................TTTTATTTTTGAAGTACATA---TT...........................................................................................................................................................................................................................................................................2211.00100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATATATCGTATCGAATCGAAT-...........................................................................................................2511.00100010
dp5
CAA----TTA-------------------------------ACCA---A-------------------------------------CACACTT----------------------ACACAC-----ACA----TACA-CA--CACTATGTACACTCGAACGGACACA---ACAAATACACAC--------AC------ACAGAA------ATAGACTA----------TAA-----------------------------------------C----ACACACACACATGAATAAGTTT-CCGTTTTT-GTTA-AATAGTTTTTTG--------------------------------------AGTAAATA----TTGAGA--AAGA--------------------ATCCTATTTTCGCC--CCCGCATA-TTGGAAAGATT-----------------CGATATTTTTAACATTTTCTTTCATA-------CTTCTTCAATTTTCAAAT------------------TCGAAA-TGAA-----AAATATA----------------AATGAAATG---AAATGA-AAACAGACGTTGACGATGTCAAGTTCGTTATAAACTACGATTATCCTTCGAACTCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................GTACACTCGAACGGACACA---ACAAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...................................................................................................................................................................................................................TAGACTA----------TAA-----------------------------------------C----ACACACACACATG..................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACTACGATTATCCTTCGAACTC.2511.0010100000000
droPer2
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATAACACACACACA-----------------------------------------------------------------------------------------C----ACACACACACATGAATAAGTTT-CCGTTTTT-GTTA-AATAGTTTTTTG--------------------------------------AGTAAATA----TTGAGA--AAGA--------------------ATCCTATTTTCGCC--CCCGCATA-TTGGAAAGATT-----------------CGATATTTTTAACATTTTCTTTCATA-------CTTCTTCAATTTTCAAAT------------------TCGAAA-TGAA-----AAATATA----------------AATGAAATG---AAATGA-AAACAGACGTTGACGATGTCAAGTTCGTTATAAACTACGATTATCCTTCGAACTCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACGATGTCAAGTTCGTT...........................2111.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATG---AAATGA-AAACAGACGTTGACG.........................................2711.001100000
droAna3
TAA----CAAAC--------------------------TTAACTAAACAAACAAACA---------------------------ATCGCACCA----------------------A-----------------------------------------------------------------------------CTGAGACAGAA------CTGACCACATAAC-CACACAA-----------------------------------------T----ACACACACACAAAAATAAGTTT-TCGTTTTT-GTTA-AATAGTTTTTTG--------------------------------------AGTAACTT----TTGAGATAAAGA--------------------TTCCTATTCTTGACTTTTC--GCATTTGAGTCGATT-----------------CGATATTTTTAACATTTCTTTTCAAA-------CTTCTCCAATTTCCA-AT------------------TCACAA-TCAA----AAAATATA----------------AATCAAATG------TG--AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTATGATTATCCTTCGAACTCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCAAGTTTGTGATCAA......................2012.002000002
...................................................................................................................A-----------------------------------------------------------------------------CTGAGACAGAA------CTGACCACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..................................................................................................................................................................................................TGAGACAGAA------CTGACCACATAAC-C...................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
............................................AAACAAACAAACA---------------------------ATCGCACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
......................................................................................CGCACCA----------------------A-----------------------------------------------------------------------------CTGAGACAGAA------CTGACCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
droBip1
CAATTAACAAAC--------------------------TTAACTAAACAAACAAACA---------------------------ATCGCACCA--A-------------------ACA---------------CC-----------------------------------------------------AGACACCCCGACAGAA------CCGACCAC--A-------TAAACA--------------------------CCTAATTACCTAC----ACACACACACAAAAATAAGTTT-TCGTTTTT-GTTG--ATAGTTTTTTG--------------------------------------AGTAACTT----TTGAGATAAAGA--------------------TTCCTATTCT-GACTTGTC--CCC-CTGCATCGATT-----------------CGATATTTTTAACATTTCTTTTCACA-------CTTCTTCAATTTCCAAAC------------------TCCAAACTGAAAATAAAAACATA----------------AATCAAATG----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTACGATTATCCTTCCAACTCGSizeHit CountTotal NormTotal
No Reads
droKik1
CAA----CCAAAG-------------------------TCAA------------CGA---------------------------ATCGCACTC--AACACA--------------A-----------------------------------------------------------------------------CATAGACAGACCCCACAACTGACACACACTATACA------TTACACACACTACACACACACACA--------------CACACACACACACACAAAAATAAGTTT-TCGTTTTTCGTTA-AATAGTTTTTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTTGACAT-----GCA-TTGGATCGATT-----------------CGATATTTTTAACATTTCTTTTCACACTCTCCAATTCTCCAATTTTCAAAT------------------TCGAAA-TGAAATC--AAATTTAA---------------AACGAAATG---ATC-GTGATCTAGACGTTGACGATGTCAAGTTTGTGATCAACTACGATTATCCTTCGAACTCCSizeHit CountTotal NormTotal
No Reads
droFic1
AAA----CAAAAA---A---------------------------A---AAAAAAAGA---------------------------ATCGCACAG----------------------ACACGA-----ATT----CC----------------------------------AGCTCACCTACAC------TAACACCAAGACAGTA------TCGGACA--CACT-CACACAAACA--------------------------------------T----ACACACACACACAAATAAGTTT-TTGTTTTT-GTTG-AATAGTTTCTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAC-------A-A-TTGGTTCGATT-----------------CGATATTTTTAACGCTTCTTTTCACA--------TTCTTCAATTTCCAAAT------------------TCGAAA-TGAA-----AAATATA----------------ATTGAAATC----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTATGATTATCCTTCGAACTCGSizeHit CountTotal NormTotal
No Reads
droEle1
TAA----CAAAG--------------------------TTAAC-A---ACACAAATG---------------------------ATCGCCCCGAT---------------------CATAA-----ACA----------------------------------AATACCATAACACGTACACACACACGCACACGAAGACAGAA------CCGGACA--CAAT-CACACAAACC---------------------------------ACCAA-----A---CCACACACAAATAAGTTT-TTGTTTTT-GTTG-AATAGTTTCTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAC-------GCA-TTGGTTCGATT-----------------CGATATTTTTAACGCTTCTTTTCACA-------CTTCTTCAATTTCCAAAT------------------TCGAAA-TGAA-----AAATATA----------------AATGAAATC----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTATGATTATCCTTCGAACTCGSizeHit CountTotal NormTotal
No Reads
droRho1
TAA----CAAA---------------------------------------ACAAATG---------------------------ATCTCACCGAT---------------------CA------------------TTA--AC-------------------CAACACCATTACACGTACACAC----ACACACCAAGACAGAA------TCGGACA--CACT-CACACAAACC---------------------------------ACTA---------AACACACACAAATAAGTTT-TTGTTTTT-GTTG-AATAGTTTCTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAC-------GTA-TTGGTTCGATT-----------------CGATATTTTTAACGCTTCTTTTCACA-------CTTCTTCAATTTCAAAAT------------------TCGAAA-TGAA-----AAATATA----------------AATGAAATC----------AAACAGACGTTGACGATGTCAAGTTTGTAATCAACTATGATTATCCTTCGAACTCGSizeHit CountTotal NormTotal
No Reads
droBia1
TAA----CAAAC--------------------------GTACCCA---AACCAAATG---------------------------ATCGCACCG----------------------ACACGC-----ACA----CC----------------------------------ACCACACGAACAC------CCACACCACGACAGAC------ACGGACACACACT-AACATAA-----------------------------------------C----CCCCACACACACAAATAAGTTT-TCGTTTTT-GTTG-AATAGTTTCTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAC-------GTA-CTGCTTCGATT-----------------CGATATTTTTAACGCTTCTTTTCACC-------ATTCTTCAATTT-CAAAC------------------TCGAAA-TGAA-----AAATATA----------------AATGAAATC----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTATGATTATCCTTCGAACTCGSizeHit CountTotal NormTotal
No Reads
droTak1
TAA----CAAAC--------------------------TTAACCA---AAACAAATG---------------------------ATCGCACCG----------------------AAT---------------------------------------------------------CGAACAC------TCACACTAAGACAGAACAC---ACGGACA--CACT-AACATACACC------------------------------------TA-----ACATACACACACAAATAAGTTTTTCGTTTTT-GTTG-AATAGTTTCTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAC-------GCA-TTGATTCGATT-----------------CGACATTTTTAACGCTTCTTTTCACA-------CTTCTTCAATTTTCAAAT------------------TCGAAA-TGAA----AAAATGTA----------------ATTGAACTC----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTATGATTATCCTTCGAACTCGSizeHit CountTotal NormTotal
No Reads
droEug1
TAA----CTAAA--------------------------TTAAC--------------------------------------------CCACTT--AATACTACATTGTAACACCGACA---------------------------------------------------------------C------ACACACTAAGACAGAA------ACGGACACACACTCTACA--------------------------------------------C----ACCTACACACACAAATAAGTTTTTTGTTTTT-GTTAAAATAGTT-CCTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAA-------ATA-TTGGTTCGATT-----------------CGATATTTTTAACGCTTCTTTTCACA-------CTTCTTCAATTTTCAAAT------------------TCGAAA-TGAA-----AAATATA----------------TTTGAAATC----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTATGATTATCCTTCGAACTCTSizeHit CountTotal NormTotal
No Reads
dm3
TAA----CAAGA--------------------------------A---AAACAAATG---------------------------ATCGCACCG----------------------ACACAA-----ACAA---CCACTAATAC-------------------CAATACCATGACATGAAAAC------ACACACCAAGACAGAA------ACGGACAC-CACT-CACACAA----------------------------------------------------GCACACAAATAAGTTTTTTGTTTTT-GTTA-AATAGTTTCTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAC-------GCA-TTGCTTCGATT-----------------TGATAATTTTAACGCTTCTTTTCACA--------TTCTTCAATTTTCAAAT------------------TCGAAA-TGAA-----AAATATT----------------ATTGAAATC----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTACGATTATCCTTCGAACTCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------ATTGAAATC----------AAACAGACGTTGACGA........................................26133.003300000000000000000000000000000000000000100000000200000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002000000000000302000000010001000100000000000000000000000000000000000000000000000000000000000000000001000100001010010000100000000111000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------ATTGAAATC----------AAACAGACGTTGACGATG......................................2818.0080000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATT----------------ATTGAAATC----------AAACAGACGTT.............................................2417.0070000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAC-------GCA-TTGCTTCGATT-----------------TGATAAT................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----------------ATTGAAATC----------AAACAGACGTTGACGA........................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGACGATGTCAAGTTTGTGA..........................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATC----------AAACAGACGTTGACGATG......................................2515.0050000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----------AAACAGACGTTGACGATGTCAAG.................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..................................................................................................................................................................................................................ACGGACAC-CACT-CACACAA----------------------------------------------------GC.......................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGATGTCAAGTTTGTGATCAAC.....................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTTTGTGATCAACTACGATTA.............2514.0040000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................CAAATG---------------------------ATCGCACCG----------------------ACACAA-----ACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATT----------------ATTGAAATC----------AAACAGACGTTGAC..........................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................AATG---------------------------ATCGCACCG----------------------ACACAA-----AC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAATC----------AAACAGACGTTGACGA........................................2413.0030000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................C------ACACACCAAGACAGAA------ACGGACAC-CACT-....................................................................................................................................................................................................................................................................................................................................................................................................................................2913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAATC----------AAACAGACGTTGACGATG......................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATT-----------------TGATAATTTTAACGCTT......................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCAAGTTTGTGATCAACTACGAT...............2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................TTT-GTTA-AATAGTTTCTTG--------------------------------------AG......................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................CAAATG---------------------------ATCGCACCG----------------------ACACAA-----AC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATT----------------ATTGAAATC----------AAACAGACGTT.............................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACGATGTCAAGTTTGTGATCAAC.....................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATT----------------ATTGAAATC----------AAACAGACGTTGACGA........................................2913.0030000000000000000000000000000000000000000000000000100000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..A----CAAGA--------------------------------A---AAACAAATG---------------------------ATCGCACCG----------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................ACGGACAC-CACT-CACACAA----------------------------------------------------G........................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................AAATG---------------------------ATCGCACCG----------------------ACACAA-----AC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTATTTTCGAC-------GCA-TTGCTTCGATT-----------------.......................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................................................................................................................................................................................................................................................................................................................................................................................................TCCTATTTTCGAC-------GCA-TTGCTTCGAT.........................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................ACAAATG---------------------------ATCGCACCG----------------------ACACAA-----ACAA---CCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATC----------AAACAGACGTTGACGT........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-TTGCTTCGATT-----------------TGATAATTTT.............................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AAGA--------------------------------A---AAACAAATG---------------------------ATCGCACCG----------------------ACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................AAGACAGAA------ACGGACAC-CACT-CACA................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAAT------------------TCGAAA-TGAA-----G.................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
droSim2
TTA----CAAAAC---A---------------------------A---AAACAAATG---------------------------ATCGCACCG----------------------ACACAA-----ACA----CCACTAATAC-------------------CAATACCATGACATGAATAC------AAACACCATGACAGAA------ACGGACAC-CACT-CACACAA----------------------------------------------------GCACACAAATAAGTTTTTCGTTTTT-GTTG-AATAGTTTCTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAC-------GCA-TTGGTTCGATT-----------------TGATAATTTTAACGCTTCTTTTCACA--------TTCTTCAATTTTCAAAT------------------TCGAAA-TGAA-----AAATTTA----------------ATTGAAATC----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTACGATTATCCTTCGAACTCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................GAA------ACGGACAC-CACT-CACACAA----------------------------------------------------GC.......................................................................................................................................................................................................................................................................................................................................................................2413.00300300000000000000
.....................................................................................................................................................................................................GACAGAA------ACGGACAC-CACT-....................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----------------ATTGAAATC----------AAACAGACGTTGACGA........................................2712.00200000020000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----------------ATTGAAATC----------AAACAGACGTTGAC..........................................2512.00200000011000000000
...........................................................................................................................................................................................................A------ACGGACAC-CACT-CACACAA----------------------------------------------------GC.......................................................................................................................................................................................................................................................................................................................................................................2212.00210100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................A--------------------TTCCTATTTTCGAC-------GCA-TTGGTT.............................................................................................................................................................................................................2412.00200200000000000000
....................................................................................................................................................................ATACCATGACATGAATAC------AAACACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
..................................................ACAAATG---------------------------ATCGCACCG----------------------ACACAA-----AC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
...................................................................................................................................................................................................ATGACAGAA------ACGGACAC-CACT-CAC.................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
.................................................AACAAATG---------------------------ATCGCACCG----------------------ACACAA-----AC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC-------GCA-TTGGTTCGATT-----------------TGAT...................................................................................................................................................................................2211.00100010000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAATC----------AAACAGACGTTGACGATGT.....................................2711.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCACA--------TTCTTCAATTTTCAAAT------------------TCGA..............................................................................................................2911.00100000000100000000
..............................................................................................................................................................................................ACACCATGACAGAA------ACGGACAC-CACT-T...................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
.................................................AACAAATG---------------------------ATCGCACCG----------------------ACACAA-----ACA----C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTTTGTGATCAACTACGATTA.............2611.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTTGTGATCAACTACGATTATCCT.........2711.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTA----------------ATTGAAATC----------AAACAGAC................................................2111.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGACGTTGACGATGG.....................................1911.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA----------------ATTGAAATC----------AAACAGACGTTGAC..........................................2611.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------ATTGAAATC----------AAACAGACGTTGACGA........................................2611.00100000010000000000
.......................................................................................................................................................................................................................................................................................................GTTTTTCGTTTTT-GTTG-A.........................................................................................................................................................................................................................................................................................................................................1820.50100000010000000000
droSec2
TTA----CAAAAT---A---------------------------A---AAACAAATG---------------------------ATCGCACCG----------------------ACACAA-----ACA----CCACTAGTAC-------------------CAATACCATGACATGAATAC------AAACACCATGACAGAA------ACGGACAC-CACT-CACACAA----------------------------------------------------GCACACAAATAAGTTTTTCGTTTTT-GTTG-AATAGTTTCTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAC-------GCA-TTGGTTCGATT-----------------TGATAATTTTAACGCTTCTTTTCACA--------TTCTTCAATTTTCAAAT------------------TCGAAA-TGAA-----AAATATA----------------ATTGAAATC----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTACGATTATCCTTCGAACTCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................A---------------------------A---AAACAAATG---------------------------ATCGCACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.......................................................................................................................................................................................................................................................................................................GTTTTTCGTTTTT-GTTG-AATAG.....................................................................................................................................................................................................................................................................................................................................2211.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATC----------AAACAGACGTTGACGATGT.....................................2311.0010100
...........................................................................................................................................................................................................A------ACGGACAC-CACT-CACACAA----------------------------------------------------GCACACAA.................................................................................................................................................................................................................................................................................................................................................................2811.0011000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAAGTTTGTGATCAACTACGA................2411.0011000
droYak3
TAA----CAAGA------------------------------------AAACAAATG---------------------------ATCGCACCAT-G-------------------ACACCACTACCATAACCACCAC---TAC-------------------CACTACAATGACACGAATAC------TCACACCATGACAGAA------ACGGACAA-CACT-CACACAA----------------------------------------------------GCACACAAATAAGTTT-TCGTTTTT-GTTG-AATAGTTTCTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAC-------GCA-TTGGTTCGATT-----------------CGATAATTTTAACGCTTCTTTTCACA--------TTCTTCAATTTTCAAAT------------------TCGAAA-TGAA-----AAATATA----------------ATTGAAATC----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTATGATTACCCTTCGAACTCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACGATGTCAAGTTTGTGATC........................2412.00200200000000
...........................................................................................................................................................................................................A------ACGGACAA-CACT-CACACAA----------------------------------------------------G........................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGATCAACTATGATTACCCTTC.......2711.00101000000000
.....................................................................................................................................................................................................................................................................................................................GTTG-AATAGTTTCTTG--------------------------------------AGT.....................................................................................................................................................................................................................................................................................1911.00101000000000
..............................................................................................................................................................................................ACACCATGACAGAA------ACGGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..........................................................................................................................................................................................................AA------ACGGACAA-CACT-CACACAA----------------------------------------------------GC.......................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTTGACGATGTCAAGTTTGTGAT.........................2611.00101000000000
droEre2
TTA----CAAGA------------------------------------AAACAAATG---------------------------ATCGCACCG----------------------ACATCA-----CCA----ACAC---CAC-------------------CACTACAACGACACGAACACTCACACTCACACCAATACAGAA------ACGGACAC-CACT-CACACAA----------------------------------------------------GCACACAAATAAGTTT-TCGTTTTT-GTTG-AATAGTTTCTTG--------------------------------------AGTA--------TTGAGA--AAGA--------------------TTCCTATTTTCGAC-------GCA-TTGGTTCGATT-----------------CGATAATTTTAACGCTTCTTTTCACA--------TTCTTCAATTTTCAAAT------------------TCGAAA-TGAA-----AAATATA----------------ATTGAAATG----------AAACAGACGTTGACGATGTCAAGTTTGTGATCAACTATGATTATCCTTCGAACTCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTTGACGATGTCAAGTTTGTGAT.........................2615.0050000005
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTTGACGATGTCAAGTTTGTGATCA.......................2811.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATG----------AAACAGACGTTGACGATGTCAAG.................................2711.0010000100
....................................................................................................................................................................................................ATACAGAA------ACGGACAC-CACT-CACA................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTTTGTGATCAACTATGATTATC...........2611.0010100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTCAAGTTTGTGATC........................1911.0010000010
...........................................................................................................................................................................................CTCACACCAATACAGAA------ACGGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATA----------------ATTGAAATG----------AAAC....................................................1911.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................................A--------------------TTCCTATTTTCGAC-------GCA-TT.................................................................................................................................................................................................................2011.0010000100
................................................................................................................................................................................................................................................................................................................TTTT-GTTG-AATAGTTTCTTG--------------------------------------AGT.....................................................................................................................................................................................................................................................................................2311.0010000010
.......................................................................................................................................................................................................CAGAA------ACGGACAC-CACT-CACA................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGATGTCAAGTTTGTGATCAACT....................2511.0010000100
.......CAAGA------------------------------------AAACAAATG---------------------------ATCGCACCG----------------------ACAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTTGACGATGTCAAGTTTGTGATC........................2711.0010000001

Generated: 05/16/2015 at 09:46 PM