ID:

dvi_18783

 Coordinate:

scaffold_13049:7081757-7082025 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.6 -10.1 -9.9

Flybase annnotation

CDS [Dvir\GJ13108-cds]; CDS [Dvir\GJ13108-cds]; exon [dvir_GLEANR_13024:3]; exon [dvir_GLEANR_13024:4]; intron [Dvir\GJ13108-in]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCAACAACGGTGAGTCGGATGGCTCTGGCAGTCCGGACGAGAACATTTTGGTACGTTAGCGACGCGTAGTATGCCTGGACATGGTCCAAAACTAACTTGCTTTTCGTTTACCCCCCTTTACTCACTATAACCCAAACGTATCGTCGCTCCGTTGTCTCGTTGTCTTTGTGGTGTCACGAATGTGCGTGTAAGTGTAGAGAACACAATGAGTCATGGTCGTGGTGTCAGCTTTCTATTCTTCCTGCTATCGCCGCTTATGATTATATATGATTTCATTATTTATGATTTTATTTACTGAACTTTTTATTTTGCATAACAGCGCCCCAAACCGCAAAATGATCCACCGCCACGTTACTCCTCGATTAATCC
************************************************************************************************************************************************************************.....((((((.((((.......((((.....)))).......)))).))))))....*********************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M027
male body		 M061
embryo
 SRR060660
Argentina_ovaries_total
 SRR060678
9x140_testes_total
 M047
female body
 SRR060685
9xArg_0-2h_embryos_total
 V053
head
 M028
head
 SRR060658
140_ovaries_total
 SRR060666
160_males_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060683
160_testes_total
 SRR060689
160x9_testes_total
 SRR1106726
embryo_14-16h
 SRR1106730
embryo_16-30h
 V047
embryo
 SRR060664
9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
.............................................................................................................................................................................................................ATGAGTCATGGTCGTGGTGTC............................................................................................................................................... 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................CTCTGGCAGTCCGGACGAGAACATTTTGA.............................................................................................................................................................................................................................................................................................................................. 29 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TGGTGTCACGAATGTGCGTGTAAGTGTA............................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GAACACAGTTAGTCATGGTCG...................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................CTCTGGCAGTCCGGACGAGAGCATTTTG............................................................................................................................................................................................................................................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................GTCTCGTTGTCTTTGTGGTGT................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................ATGGCTCTGGCAGTCCGGACG.......................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................ATAACAGCGCCCCAAACCGCAAA.................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................CCGGACGAGAACATTTTGGTAC........................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GCTCTGGCAGTCCGGACGAGAACAT................................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..AACAACGGTGAGTCGGATGGCTCTGGC.................................................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................CAAAATGATCCACCGCCACGT................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CGGGCAGTCCGGACGAGAACATTT................................................................................................................................................................................................................................................................................................................................. 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................TTTCTATTCTTCCTGCTATCGCC..................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GCTCTGGCAGTCCGGACGAGAACATTT................................................................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....AACGGTGAGTCGGATGGCTCT....................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................AAACCGCAAAATGCTCCACCA....................... 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................CGTTGGCGACGCGTGGTATGC....................................................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................ACGAGAACATTTTGGTACGTT........................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................TGGCTCTGGCAGTCCGGACGA......................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................ACCCCTCAAACCGCAAAATGAT............................. 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................TGGCTCTGGCAGTCCGGACG.......................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...ACAACGGTGAGTCGGATGGCTCT....................................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................CCACGTTACTCCTCGATTAAT.. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TGTGCCTGAACATGGTCCAGA....................................................................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......ACGCTGGGTCGGATAGCTCTG...................................................................................................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................ACATGGTCCAGGACTAGCTTG.............................................................................................................................................................................................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................GTGCGTCTAGGTGTGGAGAA........................................................................................................................................................................ 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................................................................................................................................ATGTGCGTGTTAGTGGGGAGA......................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................GGTGTGCCTGAACATGGTCC.......................................................................................................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................GACGATCACATTTTGCTACG.......................................................................................................................................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................CAGTCCGGACGATCACATA.................................................................................................................................................................................................................................................................................................................................. 19 3 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GGTTGTTGCCACTCAGCCTACCGAGACCGTCAGGCCTGCTCTTGTAAAACCATGCAATCGCTGCGCATCATACGGACCTGTACCAGGTTTTGATTGAACGAAAAGCAAATGGGGGGAAATGAGTGATATTGGGTTTGCATAGCAGCGAGGCAACAGAGCAACAGAAACACCACAGTGCTTACACGCACATTCACATCTCTTGTGTTACTCAGTACCAGCACCACAGTCGAAAGATAAGAAGGACGATAGCGGCGAATACTAATATATACTAAAGTAATAAATACTAAAATAAATGACTTGAAAAATAAAACGTATTGTCGCGGGGTTTGGCGTTTTACTAGGTGGCGGTGCAATGAGGAGCTAATTAGG
***********************************************************************************************************************************************.....((((((.((((.......((((.....)))).......)))).))))))....************************************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060659
Argentina_testes_total
 SRR060666
160_males_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060661
160x9_0-2h_embryos_total
 V053
head
 GSM1528803
follicle cells		 SRR060656
9x160_ovaries_total
 SRR060667
160_females_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060678
9x140_testes_total
 SRR060683
160_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 V116
male body		 SRR060685
9xArg_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060679
140x9_testes_total
 M027
male body		 SRR060669
160x9_females_carcasses_total
.......................................................................................................................................................................................................................................ACATAGGAAGAACGATAGCGG..................................................................................................................... 21 3 1 6.00 6 0 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................ATAGGAAGAACGATAGCGG..................................................................................................................... 19 2 2 2.00 4 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................ATAGGAAGAACGATAGCGGTG................................................................................................................... 21 3 3 1.67 5 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................CATAGGAAGAACGATAGCGG..................................................................................................................... 20 3 3 1.33 4 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................CGGTACGGACCTGTACCAGGTTTT...................................................................................................................................................................................................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................ATAGGAAGGACGATAGCGGTG................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................ATGAGTGATATTGGGTTTGCAT..................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TAGGAAGAACGATAGCGG..................................................................................................................... 18 2 4 1.00 4 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TTGTCGCGGGGTTTGGCGTTTT................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................CGCAGGGTTTGGCGCTTTA................................ 19 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TACACGCACATTCACATCTCT......................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................TTTTCCTAGGTGGCGGTGC.................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TCGCTGCGCATCATACGGACC................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CGTCAGGCCTGCTCTTGTAAA................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................GGCGGTGCAATGAGGAGCTAA..... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................GCGGGGTTTGGCGTTTTACTA............................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................CGGTGCAATGAGGAGCTAATT... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................TACCGAGACCGTCAGGCCTGCTC........................................................................................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CCAGGTTTTGATTGGACGGGA.......................................................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................ACCGCCAGGCATGCTCTT...................................................................................................................................................................................................................................................................................................................................... 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................ACCGCCAGGCCTGCCCTTA..................................................................................................................................................................................................................................................................................................................................... 19 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................GCGTTTTAGTAGGTGGTGGAG................... 21 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................ACCGCCAGGCCTGCTCTGA..................................................................................................................................................................................................................................................................................................................................... 19 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................CCTGCACCAGAGTAGAAAGA....................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................ATAGGAAGAACGATAGCG...................................................................................................................... 18 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TAGGAAGAACGATAGCGGTG................................................................................................................... 20 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................ACATAGGAAGAACGATAGCG...................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................CCACAGTGCATAGAGGCA...................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................CATAGGAAGAACGATAGCG...................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:7081707-7082075 + dvi_18783 CCAA-CAACGGTGAGTCGGA------TGGCTCTGGCAGTCCGGACGAGAACATTTTGGTACGTTAGCGACGCGTAGTATGCCTGGACA------------------------TGGT---------C----CAAAACTAACT-TGCTTTTCGTTTACCCCCCTT-TACTCACTATAACC--CAAACGTATCGT----C--------------------------------GC-TCC---GTTG------------T------------------------------------------CTCGTTGTCTTTGTGGTGTCA-----------------C--------GAATGTGCGTGTAAGTGTAGAG--AACA----CAATG----------------AGTCAT------------------------------------------------------------------GGTCGTGGTGTCAGCTTTCTATTC-----------TTC-CTG-CTATCGCC--------GC-----------------------T-TATGA-------TTAT-ATATGA------TTTCATTATT----------------TATGATTTTATTTACT-GAACTTTTTA-TTTTGCAT--AACAGCGCCCCAAACCGCAAAATGATCCACCGCCACGTTACTCCTCGATTAATCC
droMoj3 scaffold_6680:5357887-5358281 + CTAA-GAATGAGCAATCGGA------TGGCTCTGGCAGTCCGGATGAAAATGTTTTGGTATGTTAGATTTGAGTCGGTCGCTTGGACT------------------------TGGT---------C----CATAACTAACTTTGCTTTTCGTTTACT-----------------------------------------CTCTACTTTACCACTCACTCACTGTAACCC-AAATGTACCGTCG------------TC-GTTCCG--------------------------------------------TTGTGACGTC------------------A--------CAATGTACGCGTAAGTGTAGAGTAATCAATTGTAATG----------------AGTCATGTC-----AT--------------------------------------------------------GGTCGTGGTATCTGCTTTTTACTC----T-------TC-C--------------T----GCTT-GTGATAT-----ATGTAT-TT-ATA--------------GTCAGCCA-TGTTTTTATTTAT---GATTTTAACTATTTATGATTT-C---AAT-TTTGACTTTA-TTTTGCCTACAACAGCGCCCCAAACCGCATAACGATCCACCGCCACGTTACTCCTCGATTAATCC
droGri2 scaffold_15110:5764126-5764512 - CCAA-GAATAAGGAAGCGGAGGCCTCTGGCTCTGGCAGTCCGGACGAGAACATTTTGGTACGTTAACCAGG--------------GCA------------------------TGGTCTAT-----C-----TAAACTAACC-TGCTTTTCATTT------------CTAACC---CAA--AAACTGTATCTGATGTCACTCT------------------------------------CTTG------------T------------------------------------------CGCACTTTC-TTGTGACGTCA--------------------------CGGCGTGTCTGTAAGTGTAGAG--ATGG----AAATG----------------AGTCTTCCTTATTTCT--------------------------------GCTTATCT-----ATTTTATAT--A-TT-CGTT---------------------------TC-CTG-CTTTCGTCG--TCATCGCTT-TTGATAT-----ATGTA-CAT-ATTAA-------TA----------------TATATTTAT---TATTTGTTCCACTTATGATTTGATTTGGA-ATTTTTCATG-TTTTGCAT--CACAGCGCCCCAAGCCGCATAATGATCCACCGCCACGTTACTCCTCGATTAATCC
droWil2 scf2_1100000004729:437355-437854 + CTGAAGCAAGTGGT-AGCGG------AGGCTCTTGTAGTCCCGATGAAAATATTTTGGTAGGTGTTTTCTTT-------------AAATCCCACAACTAGACTAACTCACAAATGA---G-----C-----TATACTAACT-TGCTATTCATTTTC---------------------------------------GTTCTCT---------------------------CCCTCT------CTCTCTC--TCTCTCTCTCTCTCTGTCTCGCTCGCTCGTTCGTTTGCTTTCGTTTTGTCTTTGTCTGTGTGGCGCATTC---------------T--------TGGTCAACGTGTAAGTTTAGTC--ATCC----CCATAGACCGCTCTAACCAACATTCCTCCC-----TCGCCCGCCCACACACACACACACACACTCGCCTGCTTATCCTCTCACTATGAGTCATACGA-TCCCGCT-----------------------TTT-CTT-TTAACATTT--T----ATT--G--ATAATTG-AATGTTT-GT-ATGGGTTTCCGATTT------GTTATTATTTTTATTTTG---TATA-------CTTTTCAT----TTTGTT-TTGTTTTTTG-ATTTGCTTCTGACAGCGCCCCAAGCCTGATTATGATCCACCGCCCCGATATACTTCCATTAATCC
dp5 XR_group8:5181466-5181808 + C-----AAT------ACGGA------TGATTCGGGCAGCCCAGATGAGAATATTCTGGTAGGTTTTTCCTT--TAGTTTGGCGTT-----------------------------GCCTCTTTAATCTACTAACATTGATCG-TGCTTATCGTTCTT--T-CAT-CACTTAACTG---------------------GTTGT--AT---------------------CTTCTCCTCCGCCCTTGTATCTC--TATCTC--ACTCT--------------------------------------------ATATGACGTCA------------------------------ATGCGTGTAAGTCTTATC--ATCCCAGAAAATG----------------ATTCATACC-----CT---------------------------------------------------------GCC-TGCTGCC----------------------------TG-CTATCACTC--------------------------------------------------------CCACCGTTTTTGTTGATTTTGATT----------------TGCTTTTTGATTTCCCTTTT-TTTTGCTT--GACAGCGCCCCAAACCCAACAATGATCCGCCGCCACGTTATACCTCCATTAATCC
droAna3 scaffold_13337:20164045-20164437 + T-------T------ACGGA------TGGCTCCGGCAGCCCGGATGAGAACATATTGGTAGGTTATCTCTGTGTAGAACTCTCCTAATA------------------------------------C-----TAAACTAACT-CGCTTATCGTTCTGCAA-CATCCACTAAACAAACGA--ATACGGCTT--TTGGGCTCGCT---------------------------TCTT-CGCCTATGTATGTTATTCTTTC--AATCT--------------------------------------------GTGTGACGTCAAT-G-----------GCC--------CACTGTGCGTGTAAGTCCAGTC--ATCC----AAGTG----------------ATTCAT------------------------------------------------------------------AGTT-AGCTGCCCAC-------TC-CTCC---GCATTC-CTG-TTATCATTG--T----GAAC-T--T---GTT-GATGTAGC-T-ATTTA-------ATTATTGATGGCAAT-TTATTATTT-T---CAAC----------------TGCATTTTA-TTCT-TTTAA-TTTTGCTT--GACAGCGCCCCAAACCCGAAAATGATCCGCCGCCGCGTTACACCTCGATTAATCC
droBip1 scf7180000396529:248104-248496 - T-------T------TCGGA------TGGCTCCGGCAGCCCGGATGAGAACATTTTGGTAGGTTATCTCTGTGTAGAACTCTTCTAATA------------------------------------C-----GAAACTAACT-CGCTTATCGTTCTGCAA-CATCCACTAAACAAACGA--ATACGGCT-C-TTGGGTTCTAT---------------------------TCTT-CGCCTATGTATGTTGTTCTTTC--AATCT--------------------------------------------GTGTGACGTCAAT-G-----------GCC--------CACTGTGCGTGTAAGTCCAGTC--ATCC----AAGTG----------------ATTCAT------------------------------------------------------------------AGTT-AGCTGACCAC---------CCTCC---GCACTC-CTG-TTATCATTG--T----GAAT-T--T---GTT-GATGTAG-CT-ATTTA-------TTTATTGATGGCAATTTTATTATTT-T---TATT----------------TTCATTTTA-TTCT-TTTAA-TTTTGCTT--GACAGCGCCCCAAACCCGAAAATGATCCGCCGCCGCGTTACACCTCGATTAATCC
droKik1 scf7180000302510:470290-470680 - C-------T------ACGGA------TGACTCCGGCAGCCCGGATGAGAACATCTTGGTAGGTTATTTCGGTGTAGTGTGCTCTTAAAA------------------------------------C----CAAAACTAACT-TGCTTATCGTCTTACCA-CATCCACTAAACAAACGT--ACACCGCTTCTATGGGTTCTCT---------------------------TTC--------TG------------TCTA--TCT--------------------------------------------GTGTGATGTCTTCTG---TGCCTG-TGCCCGTGTATCCAC------TGTAAGTCCAGTC--ATCC----AAGTG----------------ATTCAT------------------------------------------------------------------AGTTTTGCTGCCCGC------------CT---GCCCGTTGTG-TTATCAGTT--T----GCTT-G--T---CTCGGATGTTGGTT-ATTTG-------ATCATTTATGGCCTCGTTTTTATTTAT---GATT----------------TGCATTTTG-TTTTGTTTAATTTTTGCCT--GACAGCGCCCCAAACCCGATAATGATCCGCCGCCGCGTTACACCTCGATTAATCC
droFic1 scf7180000453929:849376-849773 + C-----AAT------ACGGA------TGGCTCGGGCAGCCCGGATGAGAATATTTTGGTAGGTTATCTCTGTGTAGAATGCTGTTAAA-C-----------------------------------C----CACAACTAACT-TGCTTCTCGTTCTGCAA-CAT-CACTAAACAAACAA--AAATCGCTTCCGTGGGTTCCTC---------------------------TC-CCCAC---TG------------TTTATCTCT--------------------------------------------GTGTGACGTCTTTTGGTTTCCCTC-TGCC--------CACTGTGCGTGTAAGTCCAGTC--ATCC----AAGTG----------------ATTCAT------------------------------------------------------------------ACTT-TGCTGCCCAC---------TGTCT---GCCCAC-CTG-TTATCATTT--T----GCTTCG--T---CTT-GATGTGCCTT-ATTGA-------TTTG-TTAAGCCACTATTTTTATTTTG---AATT----------------TGCCTTATG-TTTTCTTTAA-TTTTGCTT--GACAGCGCCCCAAACCCGATAACGACCCGCCGCCGCGTTACACCTCGATTAATCC
droEle1 scf7180000491193:1600689-1601077 - C-----AAT------ACGGA------TGGCTCGGGCAGCCCGGATGAGAATATTTTGGTAGGTTTACTTTGTGTAGAATGCTGGTAAT-C-----------------------------------C----AAAAACTAACT-CGCTTATCGTTCTGCAA-CAT-CACTTAACAAATGG--AAAACGCTTCCATGGTTTCTTC---------------------------TC-TCCAC---TG------------TTAATATCT--------------------------------------------GTGTGACGTATTTTG-CCCGTCTG-TGCC--------AACTGTGCGTGTAAGTCCAGTC--ATCC----AAATG----------------ATTCAT------------------------------------------------------------------AGTT-TGCTGCCCAC---------TGTCT---GTCCAC-CTG-TTATCATTT-------GATT-A--T---------TATG-CCT-ATTAA-------TTTG-TTATGCGCGTGTTTATTATTTT---TATT----------------TGCCTTATG-TTTTCTTTAA-TTTTGCTT--GACAGCGCCCCAAACCCGAAAATGATCCGCCGCCGCGGTACACCTCGATTAACCC
droRho1 scf7180000779207:75726-76116 - CGAA-CAAT------ACGGA------TGGCTCGGGCAGCCCGGATGAGAATATTTTGGTAGGTTTACTTTGTGTAAAATGCTGTTAAT-C-----------------------------------A----AACAACTAACT-CGCTTATCGTTCTGAAA-CAT-CACTAAACAAATGA--AAAACGCTTCCATGGGTTCTTC--------------------------CCCCAACGCT-------------------ATATCT--------------------------------------------GTGTGACGTATTTTT-CCCGTCTG-TGCC--------TACTGTGCGTGTAAGTCCAGTC--ATCC----AAATG----------------ATTCAT------------------------------------------------------------------AGTT-TGCTGCCCAC---------TGTCT---GCCCAC-CTG-TTATCATTT-------GATT-G--T---------TATG-CCT-TTTGA-------TTTG-TTATTCCAGTGTTTTTTTTA-TTATTATT----------------TGCCTTAT---TTTCTTTAA-TTTTGCTT--GACAGCGCCCCAAACCTGAAAATGATCCGCCTCCGCGTTACACCTCTATTAATCC
droBia1 scf7180000302193:4309025-4309412 - AC----AAT------ACGGA------TGGCTCGGGCAGCCCGGATGAGAATATTTTGGTAGGTGAACCCTGTGTAGATTGCCAGTAAAAC-----------------------------------A----AACAACTAACT-TGCTTATCTCTCTGCCA-CAT-TACTAAACAAATGA--A-AACGCTTCCATGGGTTGTGA---------------------------TC-TCCAA---TC------------CTTATCTGT--------------------------------------------GTGTGACGTCTTT-GGCCTGTCTA-TGCC--------CACTGTGCGTGTAAGTCCAGTC--ATCC----AAATG----------------ATTCAT------------------------------------------------------------------AGCT-TGCTGCCCAC-------TCTGTCT---GCCCAA-TTG-CTATCATTT--C----GCTT-G--T---CTC-GATGTACCTTTACTT-----------------------ATTTTTATTTGTTATTATT----------------TGCCTTATG-TTTTCTTTGA-TTTTGCTT--GACAGCGCCCCAAACCCGAAAATGATCCGCCGCCGCGTTACACCTCCATTAATCC
droTak1 scf7180000415809:699952-700355 - C-----AAT------ACGGA------TGACTCGGGCAGCCCGGATGAGAATATTTTGGTAGGTTAACTCTGTGTAGATTGCTCTTAAAT------------------------------------C----CAAAACTAACT-TGCTTATCGTTCTGCCA-CAT-AACTAAACAAATGA--AAAACGCTTCCATGGGTTCTGCTA---------------------C---TC-TCCAA---TC------------TTTATCTGT--------------------------------------------GTGTGACGTCTGTTGGCCTGTCTATTGCC--------CACTGTGCGTGTAAGTCCAGTC--ATCC----AAATG----------------ATTCAT------------------------------------------------------------------AGTT-TGCCGCCCAC---------TGTCT---GCCCAA-TTGTTTATCATTTCTC----GCTT-G--T---CTC-GATGTGCCTT-ATTGA-------TTTG-TTACCCCAGAGTTATCATTTTT---TATT----------------TGCCTTATG-TTTTCTTTAA-TTTTGCTT--GACAGCGCCCCAAACCCGAAAATGATCCGCCGCCGCGTTACACCTCTATTAATCC
droEug1 scf7180000409711:4312935-4313327 - C-----AAT------ACGGA------TGGCTCGGGCAGCCCGGATGAGAATATTTTGGTAGGTTATCTTTATGTAGAATGCTGTTAAA-T-----------------------------------C----AACAACTAACT-CGCTTATCGTTCTGCTA-TAT-CACTTAACAAACGACTATAACGCTTCCATGGGTTCTCT---------------------------TCCTCTACTTTTG------------TA--TATCT--------------------------------------------GTGTGACGTCTTTTG-----------GCC--------CACTATTCGTGTAAGTCCAGTC--ATCC----AAATG----------------ATTCAT------------------------------------------------------------------AGTT-CGCTGCCCAC---------TGTCTGCCGCCCGC-CTG-TTATCATTT--C----GCTT-G--T---CTC-GATGTGTCCT-ATTGA-------TTTA-TTTTGCCAGTGTTTTCATTTTT---TATT----------------TGCCTTATG-TTTT-TTTAA-TTTTGCTT--GACAGCGCCCTAAACCCGAAAATGATCCGCCGCCGCGGTACACATCTATTAATCC
dm3 chr3L:6747858-6748212 - C-----AAC------ACGGA------TGGCTCGGGCAGCCCGGATGAGAATATTTTGGTAGGTTATCTCTGTGTAGAATGCTGTTAAAGC-----------------------------------C----AACAACTAACT-CGCTTATCGTTCTGCTATCAC-CACTAAACAAACGA--AAAACGCTTCTATGGGCTCTCC---------------------------TCCACCGCTCTTG------------CCTAT-----------------------------------------------------------------------------------------CTCTGTGTAAGTCCAGTC--ATCC----AAGTG----------------ATTCAT------------------------------------------------------------------AGTT-TACTGTCCAG-------------------------TG-TTATCATTT--C----GCTC-G--T---CTT-GATGTTCCCC-ATTGA-------TTTG-TTATGCCAGTGTTTTCATTTTT---TATT----------------TGCCTTATC-TTTTCTTTAA-TTTTGCCT--AACAGCGCCCCAAACCCGAAAATGATCCGCCGCCGCGTTACACCTCCATTAATCC
droSim2 3l:6623176-6623531 - dsi_9721 C-----AAC------ACGGA------TGGCTCGGGCAGTCCGGATGAGAATATTTTGGTAGGTTATCTCTGTGTAGAATGCTGGTAAAGC-----------------------------------C----AACAACTAACT-CGCTTATCGTTCTGCTATCGT-CACTAAACAAACGA--AAAACGCTTCCGTGGGCTCTCC---------------------------TCTACCGCTCTTG------------TCTA----------------------------------------------------------------------------------------TTCTCTGTGTAAGTCCAGTC--ATCC----AAGTG----------------ATTCAT------------------------------------------------------------------AGTT-TGCTGTCCAC-------------------------TG-TTATCATTT--T----GCTC-G--T---CTC-GATGTTCCCT-ATTGA-------TTTG-TTATGCCAGTGTTTTTATTTTT---TATT----------------TGCCTTATA-TTTTCTTTAA-TTTTGCCT--AACAGCGCCCCAAACCCGAAAATGATCCGCCGCCGCGTTACACCTCCATTAATCC
droSec2 scaffold_2:6684487-6684842 - C-----AAC------ACGGA------TGGCTCGGGCAGTCCGGATGAGAATATTTTGGTAGGTTATCTCTGTGTAGAATGCTGTTAAAGC-----------------------------------C----AACAACTAACT-CGCTTATCGTTCTGCTATCGT-CACTAAACAAACGA--AAAACGCTTCCGTGGGCTCTCC---------------------------TCCACCGCTCTTG------------TCTA----------------------------------------------------------------------------------------TTCTCTGTGTAAGTCCAGTC--ATCC----AAGTG----------------ATTCAT------------------------------------------------------------------AGTT-TGCTGTCCAC-------------------------TG-TTATCATTT--T----GCTC-G--T---CTC-GATGTTCCCT-ATTGA-------TTTG-TTATGCCAGTGTTTTTATTTTT---TATT----------------TGCCTTATA-TTTTCTTTAA-TTTTGCCT--AACAGCGCCCCAAACCCGAAAATGATCCGCCGCCGCGTTACACCTCCATTAACCC
droYak3 3L:7333128-7333503 - -------AT------ACGGA------TGGCTCGGGCAGCCCGGATGAGAATATTTTGGTAGGTTATCTCTGTGTAGAATGCTGTTAAA-C-----------------------------------C----AACAACTAACT-CGCTTATCGTTCTGCAA-CAT-CACTAAACAAATGA--AAAACGCTACTATGGGTTCTCCAC---------------------CTCCTCCTCCACTCTTG------------TTTATCTCT--------------------------------------------GTGTGACGTC------------------C--------CACTGTGCGTGTAAGTCCAGTC--ATCC----AAATG----------------ATTCAT------------------------------------------------------------------AGCT-TGCTGTCCAC-------------------------TG-TTATCGCTT--C----GCTA-G--T---CTC-GATGTTCCTT-ATTGA-------TTTG-TTATGCCAGTGTTTTTATTTTT---TATT----------------TGCCTTATC-TTTTCTTTAA-TTTTGCCT--AACAGCGCCCCAAACCCGAAAATGATCCGCCGCCGCGTTACACCTCCATTAATCC
droEre2 scaffold_4784:4615799-4616170 + C-----AAT------ACGGA------TGGCTCGGGCAGCCCGGATGAGAATATTCTGGTAGGTTATCTCTGTGTAGAATGCTGTTTAA-C-----------------------------------C----AAAAACTAACT-CGCTTCTCGTTCTGCAA-CAT-CACTAAACAAATGA--AATACGCTTCCATGGGCTCTCC---------------------------TCCTCCACTCTTG------------TTTGTTTCT--------------------------------------------GTGCGAAA------------------ACC--------CACTGTGCGTGTAAGTTCAGTC--ATCC----AAGTG----------------ATTCAT------------------------------------------------------------------AGCT-TGTTGTCCAC-------------------------TG-TTATCTTTT--C----GCTT-G--A---CTC-AATGTTCCCT-ATTGA-------TTTG-TTATGCCAGTGTTTCTATTTTT---TATT----------------TGCCTTATT-TTCTCTTTAA-TTTTGCCT--AACAGCGCCCCAAACCCGAAAATGATCCGCCGCCGCGTTACACCTCCATTAATCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CCAA-CAACGGTGAGTCGGA------TGGCTCTGGCAGTCCGGACGAGAACATTTTGGTACGTTAGCGACGCGTAGTATGCCTGGACA------------------------TGGT---------C----CAAAACTAACT-TGCTTTTCGTTTACCCCCCTT-TACTCACTATAACC--CAAACGTATCGT----C--------------------------------GC-TCC---GTTG------------T------------------------------------------CTCGTTGTCTTTGTGGTGTCA-----------------C--------GAATGTGCGTGTAAGTGTAGAG--AACA----CAATG----------------AGTCAT------------------------------------------------------------------GGTCGTGGTGTCAGCTTTCTATTC-----------TTC-CTG-CTATCGCC--------GC-----------------------T-TATGA-------TTAT-ATATGA------TTTCATTATT----------------TATGATTTTATTTACT-GAACTTTTTA-TTTTGCAT--AACAGCGCCCCAAACCGCAAAATGATCCACCGCCACGTTACTCCTCGATTAATCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................ATG----------------AGTCAT------------------------------------------------------------------GGTCGTGGTGTC..............................................................................................................................................................................................................................2112.002000000000020000000000000000000000000000000000000000000000000000
.............................CTCTGGCAGTCCGGACGAGAACATTTTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TGGTGTCA-----------------C--------GAATGTGCGTGTAAGTGTA....................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................G------------T------------------------------------------CTCGTTGTCTTTGTGGTGT...................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
...................A------TGGCTCTGGCAGTCCGGACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--AACAGCGCCCCAAACCGCAAA..................................2311.001000000000000000010000000000000000000000000000000000000000000000
.......................................CCGGACGAGAACATTTTGGTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
............................GCTCTGGCAGTCCGGACGAGAACAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000100
..AA-CAACGGTGAGTCGGA------TGGCTCTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAATGATCCACCGCCACGT.................2111.001000000000000000000000000000000000001000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTATTC-----------TTC-CTG-CTATCGCC--------...............................................................................................................................................................................2311.001100000000000000000000000000000000000000000000000000000000000000
............................GCTCTGGCAGTCCGGACGAGAACATTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
......AACGGTGAGTCGGA------TGGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
...........................................ACGAGAACATTTTGGTACGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
..........................TGGCTCTGGCAGTCCGGACGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
..........................TGGCTCTGGCAGTCCGGACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
...A-CAACGGTGAGTCGGA------TGGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000100000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACGTTACTCCTCGATTAAT..2111.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
CTAA-GAATGAGCAATCGGA------TGGCTCTGGCAGTCCGGATGAAAATGTTTTGGTATGTTAGATTTGAGTCGGTCGCTTGGACT------------------------TGGT---------C----CATAACTAACTTTGCTTTTCGTTTACT-----------------------------------------CTCTACTTTACCACTCACTCACTGTAACCC-AAATGTACCGTCG------------TC-GTTCCG--------------------------------------------TTGTGACGTC------------------A--------CAATGTACGCGTAAGTGTAGAGTAATCAATTGTAATG----------------AGTCATGTC-----AT--------------------------------------------------------GGTCGTGGTATCTGCTTTTTACTC----T-------TC-C--------------T----GCTT-GTGATAT-----ATGTAT-TT-ATA--------------GTCAGCCA-TGTTTTTATTTAT---GATTTTAACTATTTATGATTT-C---AAT-TTTGACTTTA-TTTTGCCTACAACAGCGCCCCAAACCGCATAACGATCCACCGCCACGTTACTCCTCGATTAATCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-TTTGACTTTA-TTTTGCCTACAACAG..................................................2711.001100000
.............AATCGGA------TGGCTCTGGCAGTCCGGATGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-TT-ATA--------------GTCAGCCA-TGTTT.....................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCTTTTTACTC----T-------TC-C--------------T----GCTT-GTGAC.....................................................................................................................................................................2811.001000010
droGri2
CCAA-GAATAAGGAAGCGGAGGCCTCTGGCTCTGGCAGTCCGGACGAGAACATTTTGGTACGTTAACCAGG--------------GCA------------------------TGGTCTAT-----C-----TAAACTAACC-TGCTTTTCATTT------------CTAACC---CAA--AAACTGTATCTGATGTCACTCT------------------------------------CTTG------------T------------------------------------------CGCACTTTC-TTGTGACGTCA--------------------------CGGCGTGTCTGTAAGTGTAGAG--ATGG----AAATG----------------AGTCTTCCTTATTTCT--------------------------------GCTTATCT-----ATTTTATAT--A-TT-CGTT---------------------------TC-CTG-CTTTCGTCG--TCATCGCTT-TTGATAT-----ATGTA-CAT-ATTAA-------TA----------------TATATTTAT---TATTTGTTCCACTTATGATTTGATTTGGA-ATTTTTCATG-TTTTGCAT--CACAGCGCCCCAAGCCGCATAATGATCCACCGCCACGTTACTCCTCGATTAATCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................TTGGTACGTTAACCAGG--------------GCA------------------------T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-CTTTCGTCG--TCATCGCTT-..........................................................................................................................................................................2011.00110
droWil2
CTGAAGCAAGTGGT-AGCGG------AGGCTCTTGTAGTCCCGATGAAAATATTTTGGTAGGTGTTTTCTTT-------------AAATCCCACAACTAGACTAACTCACAAATGA---G-----C-----TATACTAACT-TGCTATTCATTTTC---------------------------------------GTTCTCT---------------------------CCCTCT------CTCTCTC--TCTCTCTCTCTCTCTGTCTCGCTCGCTCGTTCGTTTGCTTTCGTTTTGTCTTTGTCTGTGTGGCGCATTC---------------T--------TGGTCAACGTGTAAGTTTAGTC--ATCC----CCATAGACCGCTCTAACCAACATTCCTCCC-----TCGCCCGCCCACACACACACACACACACTCGCCTGCTTATCCTCTCACTATGAGTCATACGA-TCCCGCT-----------------------TTT-CTT-TTAACATTT--T----ATT--G--ATAATTG-AATGTTT-GT-ATGGGTTTCCGATTT------GTTATTATTTTTATTTTG---TATA-------CTTTTCAT----TTTGTT-TTGTTTTTTG-ATTTGCTTCTGACAGCGCCCCAAGCCTGATTATGATCCACCGCCCCGATATACTTCCATTAATCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTT------GTTATTATTTTTATTTTG---T.........................................................................................................2411.00100010
........................................................................................................................................................................................................................................................................................TCGTTTGCTTTCGTTTTGTCT..................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
...........GGT-AGCGG------AGGCTCTTGTAGTCCCGATGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100
...........................................ATGAAAATATTTTGGTAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTG-AATGTTT-GT-ATGGGT..............................................................................................................................................2011.00100100
....AGCAAGTGGT-AGCGG------AGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
......CAAGTGGT-AGCGG------AGGCTCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
...........GGT-AGCGG------AGGCTCTTGTAGTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCTGATTATGATCCACCGCCCCG..................2611.00101000
........AGTGGT-AGCGG------AGGCTCTTGTAGTCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
...AAGCAAGTGGT-AGCGG------AGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTG-AATGTTT-GT-ATGGG...............................................................................................................................................2111.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CCCACACACACACACACACACT.......................................................................................................................................................................................................................................................................22200.05100001
dp5
C-----AAT------ACGGA------TGATTCGGGCAGCCCAGATGAGAATATTCTGGTAGGTTTTTCCTT--TAGTTTGGCGTT-----------------------------GCCTCTTTAATCTACTAACATTGATCG-TGCTTATCGTTCTT--T-CAT-CACTTAACTG---------------------GTTGT--AT---------------------CTTCTCCTCCGCCCTTGTATCTC--TATCTC--ACTCT--------------------------------------------ATATGACGTCA------------------------------ATGCGTGTAAGTCTTATC--ATCCCAGAAAATG----------------ATTCATACC-----CT---------------------------------------------------------GCC-TGCTGCC----------------------------TG-CTATCACTC--------------------------------------------------------CCACCGTTTTTGTTGATTTTGATT----------------TGCTTTTTGATTTCCCTTTT-TTTTGCTT--GACAGCGCCCCAAACCCAACAATGATCCGCCGCCACGTTATACCTCCATTAATCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACCCAACAATGATCCGCCGC......................2312.0020200000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATCCGCCGCCACGTT................1911.0010100000000
..............................................................................TGGCGTT-----------------------------GCCTCTTTAATCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................CCCAGATGAGAATATTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...................A------TGATTCGGGCAGCCCAGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droAna3
T-------T------ACGGA------TGGCTCCGGCAGCCCGGATGAGAACATATTGGTAGGTTATCTCTGTGTAGAACTCTCCTAATA------------------------------------C-----TAAACTAACT-CGCTTATCGTTCTGCAA-CATCCACTAAACAAACGA--ATACGGCTT--TTGGGCTCGCT---------------------------TCTT-CGCCTATGTATGTTATTCTTTC--AATCT--------------------------------------------GTGTGACGTCAAT-G-----------GCC--------CACTGTGCGTGTAAGTCCAGTC--ATCC----AAGTG----------------ATTCAT------------------------------------------------------------------AGTT-AGCTGCCCAC-------TC-CTCC---GCATTC-CTG-TTATCATTG--T----GAAC-T--T---GTT-GATGTAGC-T-ATTTA-------ATTATTGATGGCAAT-TTATTATTT-T---CAAC----------------TGCATTTTA-TTCT-TTTAA-TTTTGCTT--GACAGCGCCCCAAACCCGAAAATGATCCGCCGCCGCGTTACACCTCGATTAATCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCGCCGCCGCGTTACACCTCGA.......2511.001100000
.............................................................................................................................................................................AACGA--ATACGGCTT--TTGGGCTCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
droBip1
T-------T------TCGGA------TGGCTCCGGCAGCCCGGATGAGAACATTTTGGTAGGTTATCTCTGTGTAGAACTCTTCTAATA------------------------------------C-----GAAACTAACT-CGCTTATCGTTCTGCAA-CATCCACTAAACAAACGA--ATACGGCT-C-TTGGGTTCTAT---------------------------TCTT-CGCCTATGTATGTTGTTCTTTC--AATCT--------------------------------------------GTGTGACGTCAAT-G-----------GCC--------CACTGTGCGTGTAAGTCCAGTC--ATCC----AAGTG----------------ATTCAT------------------------------------------------------------------AGTT-AGCTGACCAC---------CCTCC---GCACTC-CTG-TTATCATTG--T----GAAT-T--T---GTT-GATGTAG-CT-ATTTA-------TTTATTGATGGCAATTTTATTATTT-T---TATT----------------TTCATTTTA-TTCT-TTTAA-TTTTGCTT--GACAGCGCCCCAAACCCGAAAATGATCCGCCGCCGCGTTACACCTCGATTAATCCSizeHit CountTotal NormTotal
No Reads
droKik1
C-------T------ACGGA------TGACTCCGGCAGCCCGGATGAGAACATCTTGGTAGGTTATTTCGGTGTAGTGTGCTCTTAAAA------------------------------------C----CAAAACTAACT-TGCTTATCGTCTTACCA-CATCCACTAAACAAACGT--ACACCGCTTCTATGGGTTCTCT---------------------------TTC--------TG------------TCTA--TCT--------------------------------------------GTGTGATGTCTTCTG---TGCCTG-TGCCCGTGTATCCAC------TGTAAGTCCAGTC--ATCC----AAGTG----------------ATTCAT------------------------------------------------------------------AGTTTTGCTGCCCGC------------CT---GCCCGTTGTG-TTATCAGTT--T----GCTT-G--T---CTCGGATGTTGGTT-ATTTG-------ATCATTTATGGCCTCGTTTTTATTTAT---GATT----------------TGCATTTTG-TTTTGTTTAATTTTTGCCT--GACAGCGCCCCAAACCCGATAATGATCCGCCGCCGCGTTACACCTCGATTAATCCSizeHit CountTotal NormTotal
No Reads
droFic1
C-----AAT------ACGGA------TGGCTCGGGCAGCCCGGATGAGAATATTTTGGTAGGTTATCTCTGTGTAGAATGCTGTTAAA-C-----------------------------------C----CACAACTAACT-TGCTTCTCGTTCTGCAA-CAT-CACTAAACAAACAA--AAATCGCTTCCGTGGGTTCCTC---------------------------TC-CCCAC---TG------------TTTATCTCT--------------------------------------------GTGTGACGTCTTTTGGTTTCCCTC-TGCC--------CACTGTGCGTGTAAGTCCAGTC--ATCC----AAGTG----------------ATTCAT------------------------------------------------------------------ACTT-TGCTGCCCAC---------TGTCT---GCCCAC-CTG-TTATCATTT--T----GCTTCG--T---CTT-GATGTGCCTT-ATTGA-------TTTG-TTAAGCCACTATTTTTATTTTG---AATT----------------TGCCTTATG-TTTTCTTTAA-TTTTGCTT--GACAGCGCCCCAAACCCGATAACGACCCGCCGCCGCGTTACACCTCGATTAATCCSizeHit CountTotal NormTotal
No Reads
droEle1
C-----AAT------ACGGA------TGGCTCGGGCAGCCCGGATGAGAATATTTTGGTAGGTTTACTTTGTGTAGAATGCTGGTAAT-C-----------------------------------C----AAAAACTAACT-CGCTTATCGTTCTGCAA-CAT-CACTTAACAAATGG--AAAACGCTTCCATGGTTTCTTC---------------------------TC-TCCAC---TG------------TTAATATCT--------------------------------------------GTGTGACGTATTTTG-CCCGTCTG-TGCC--------AACTGTGCGTGTAAGTCCAGTC--ATCC----AAATG----------------ATTCAT------------------------------------------------------------------AGTT-TGCTGCCCAC---------TGTCT---GTCCAC-CTG-TTATCATTT-------GATT-A--T---------TATG-CCT-ATTAA-------TTTG-TTATGCGCGTGTTTATTATTTT---TATT----------------TGCCTTATG-TTTTCTTTAA-TTTTGCTT--GACAGCGCCCCAAACCCGAAAATGATCCGCCGCCGCGGTACACCTCGATTAACCCSizeHit CountTotal NormTotal
No Reads
droRho1
CGAA-CAAT------ACGGA------TGGCTCGGGCAGCCCGGATGAGAATATTTTGGTAGGTTTACTTTGTGTAAAATGCTGTTAAT-C-----------------------------------A----AACAACTAACT-CGCTTATCGTTCTGAAA-CAT-CACTAAACAAATGA--AAAACGCTTCCATGGGTTCTTC--------------------------CCCCAACGCT-------------------ATATCT--------------------------------------------GTGTGACGTATTTTT-CCCGTCTG-TGCC--------TACTGTGCGTGTAAGTCCAGTC--ATCC----AAATG----------------ATTCAT------------------------------------------------------------------AGTT-TGCTGCCCAC---------TGTCT---GCCCAC-CTG-TTATCATTT-------GATT-G--T---------TATG-CCT-TTTGA-------TTTG-TTATTCCAGTGTTTTTTTTA-TTATTATT----------------TGCCTTAT---TTTCTTTAA-TTTTGCTT--GACAGCGCCCCAAACCTGAAAATGATCCGCCTCCGCGTTACACCTCTATTAATCCSizeHit CountTotal NormTotal
No Reads
droBia1
AC----AAT------ACGGA------TGGCTCGGGCAGCCCGGATGAGAATATTTTGGTAGGTGAACCCTGTGTAGATTGCCAGTAAAAC-----------------------------------A----AACAACTAACT-TGCTTATCTCTCTGCCA-CAT-TACTAAACAAATGA--A-AACGCTTCCATGGGTTGTGA---------------------------TC-TCCAA---TC------------CTTATCTGT--------------------------------------------GTGTGACGTCTTT-GGCCTGTCTA-TGCC--------CACTGTGCGTGTAAGTCCAGTC--ATCC----AAATG----------------ATTCAT------------------------------------------------------------------AGCT-TGCTGCCCAC-------TCTGTCT---GCCCAA-TTG-CTATCATTT--C----GCTT-G--T---CTC-GATGTACCTTTACTT-----------------------ATTTTTATTTGTTATTATT----------------TGCCTTATG-TTTTCTTTGA-TTTTGCTT--GACAGCGCCCCAAACCCGAAAATGATCCGCCGCCGCGTTACACCTCCATTAATCCSizeHit CountTotal NormTotal
No Reads
droTak1
C-----AAT------ACGGA------TGACTCGGGCAGCCCGGATGAGAATATTTTGGTAGGTTAACTCTGTGTAGATTGCTCTTAAAT------------------------------------C----CAAAACTAACT-TGCTTATCGTTCTGCCA-CAT-AACTAAACAAATGA--AAAACGCTTCCATGGGTTCTGCTA---------------------C---TC-TCCAA---TC------------TTTATCTGT--------------------------------------------GTGTGACGTCTGTTGGCCTGTCTATTGCC--------CACTGTGCGTGTAAGTCCAGTC--ATCC----AAATG----------------ATTCAT------------------------------------------------------------------AGTT-TGCCGCCCAC---------TGTCT---GCCCAA-TTGTTTATCATTTCTC----GCTT-G--T---CTC-GATGTGCCTT-ATTGA-------TTTG-TTACCCCAGAGTTATCATTTTT---TATT----------------TGCCTTATG-TTTTCTTTAA-TTTTGCTT--GACAGCGCCCCAAACCCGAAAATGATCCGCCGCCGCGTTACACCTCTATTAATCCSizeHit CountTotal NormTotal
No Reads
droEug1
C-----AAT------ACGGA------TGGCTCGGGCAGCCCGGATGAGAATATTTTGGTAGGTTATCTTTATGTAGAATGCTGTTAAA-T-----------------------------------C----AACAACTAACT-CGCTTATCGTTCTGCTA-TAT-CACTTAACAAACGACTATAACGCTTCCATGGGTTCTCT---------------------------TCCTCTACTTTTG------------TA--TATCT--------------------------------------------GTGTGACGTCTTTTG-----------GCC--------CACTATTCGTGTAAGTCCAGTC--ATCC----AAATG----------------ATTCAT------------------------------------------------------------------AGTT-CGCTGCCCAC---------TGTCTGCCGCCCGC-CTG-TTATCATTT--C----GCTT-G--T---CTC-GATGTGTCCT-ATTGA-------TTTA-TTTTGCCAGTGTTTTCATTTTT---TATT----------------TGCCTTATG-TTTT-TTTAA-TTTTGCTT--GACAGCGCCCTAAACCCGAAAATGATCCGCCGCCGCGGTACACATCTATTAATCCSizeHit CountTotal NormTotal
No Reads
dm3
C-----AAC------ACGGA------TGGCTCGGGCAGCCCGGATGAGAATATTTTGGTAGGTTATCTCTGTGTAGAATGCTGTTAAAGC-----------------------------------C----AACAACTAACT-CGCTTATCGTTCTGCTATCAC-CACTAAACAAACGA--AAAACGCTTCTATGGGCTCTCC---------------------------TCCACCGCTCTTG------------CCTAT-----------------------------------------------------------------------------------------CTCTGTGTAAGTCCAGTC--ATCC----AAGTG----------------ATTCAT------------------------------------------------------------------AGTT-TACTGTCCAG-------------------------TG-TTATCATTT--C----GCTC-G--T---CTT-GATGTTCCCC-ATTGA-------TTTG-TTATGCCAGTGTTTTCATTTTT---TATT----------------TGCCTTATC-TTTTCTTTAA-TTTTGCCT--AACAGCGCCCCAAACCCGAAAATGATCCGCCGCCGCGTTACACCTCCATTAATCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAG-------------------------TG-TTATCATTT--C----GC.............................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................AACAACTAACT-CGCTTATCGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000
..........................................................................................................................................ACT-CGCTTATCGTTCTGCTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCATTT--C----GCTC-G--T---CTT-GATG...........................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TGGCTCGGGCAGCCCGGATGAGAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
C-----AAC------ACGGA------TGGCTCGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGAAAATGATCCGCCGCCGCGT.................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................AAACAAACGA--AAAACGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TAT-----------------------------------------------------------------------------------------CTCTGTGTAAGTCCA....................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................ACGA--AAAACGCTTCTATGGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GCTCGGGCAGCCCGGATGAGAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TCGGGCAGCCCGGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-TTATGCCAGTGTTTTCAT.................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................CTAACT-CGCTTATCGTTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCCGAAAATGATCCGCCG.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................TAT-----------------------------------------------------------------------------------------CTCTGTGTAAGTCCAGTC--...............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
..............................TCGGGCAGCCCGGATGAGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................AGCCCGGATGAGAATATTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGA-------TTTG-TTATGCCAGTGT.......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTAA-TTTTGCCT--AACAG..................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........C------ACGGA------TGGCTCGGGCAGCCCGGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AAC------ACGGA------TGGCTCGGGCAGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
C-----AAC------ACGGA------TGGCTCGGGCAGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................TGGCTCGGGCAGCCCGGATGAGAATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT--C----GCTC-G--T---CTT-GATGTT.........................................................................................................................................................1911.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AAC------ACGGA------TGGCTCGGGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
................................................................................................................................................................................GA--AAAACGCTTCTATGGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................CGA--AAAACGCTTCTATGGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GGGCAGCCCGGATGAGAATATTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
......AAC------ACGGA------TGGCTCGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................................GCCCGGATGAGAATATTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AC------ACGGA------TGGCTCGGGCAGCCCGGATGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAA-TTTTGCCT--AACAGCG................................................2111.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GA------TGGCTCGGGCAGCCCGGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..................GA------TGGCTCGGGCAGCCCGGATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................GGCTCGGGCAGCCCGGATGAGAATATTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................CGCTCTTG------------CCTAT-----------------------------------------------------------------------------------------CTCTG..............................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCGAAAATGATCCGCC........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
C-----AAC------ACGGA------TGGCTCGGGCAGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..................GA------TGGCTCGGGCAGCCCGGATGAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA-------TTTG-TTATGCCAGTGTTA.....................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................AAAACGCTTCTATGGGCTCTCT---------------------------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ACGGA------TGGCTCGGGCAGCCCGGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------TTTG-TTATGCCAGTGTTTTC...................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTT--C----GCTC-G--T---CTT-GATGTTC........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................AGCCCGGATGAGAATATTTTGGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ACGGA------TGGCTCGGGCAGCCCGGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................AACAACTAACT-CGCTTATCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCGAAAATGATCCGCCGC......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................CTCGGGCAGCCCGGATGAGAATATTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTTT---TATT----------------TGCCTTATC-T...........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCAG-------------------------TG-TTATCATTT--C----G..............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.......AC------ACGGA------TGGCTCGGGCAGCCCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
C-----AAC------ACGGA------TGGCTCGGGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................GA--AAAACGCTTCTATGGGCTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................T-CGCTTATCGTTCTGCTATCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................CTCTGTGTAGAATGCTGTTAAAGC-----------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGA-------TTTG-TTATGCCAGTGTT......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCGTTACACCTCCATTAATC.2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................GTAAGTCCAGTC--ATCC----AAGTG----------------..................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-TTATGCCAGTGTTTTCATT................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.........................................................................................................................................AACT-CGCTTATCGTTCTGCTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................CCGGATGAGAATATTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TTTTGCCT--AACAGCGCCCCA...........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAAATGATCCGCCGCCGCGT.................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTT---TATT----------------TGCCTTATC-TTT.........................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCC-ATTGA-------TTTG-TTAT...............................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........C------ACGGA------TGGCTCGGGCAGCCCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................CGGATGAGAATATTTTGGTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GCAGCCCGGATGAGAATATTTTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.........................................................GTAGGTTATCTCTGTGTAGAATGCTGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CTGTGTAGAATGCTGTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................TCGGGCAGCCCGGATGAGAATATTTTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATTT--C----GCTC-G--T---CTT-GA.............................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGATCCGCCGCCGCGTTACA.............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TGTAGAATGCTGTTAAAGC-----------------------------------C----A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AC------ACGGA------TGGCTCGGGCAGCCCGGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........C------ACGGA------TGGCTCGGGCAGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
C-----AAC------ACGGA------TGGCTCGGGCAGCCCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------------------------TG-TTATCATTT--C----GCTC-G--T---CT.................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
droSim2
C-----AAC------ACGGA------TGGCTCGGGCAGTCCGGATGAGAATATTTTGGTAGGTTATCTCTGTGTAGAATGCTGGTAAAGC-----------------------------------C----AACAACTAACT-CGCTTATCGTTCTGCTATCGT-CACTAAACAAACGA--AAAACGCTTCCGTGGGCTCTCC---------------------------TCTACCGCTCTTG------------TCTA----------------------------------------------------------------------------------------TTCTCTGTGTAAGTCCAGTC--ATCC----AAGTG----------------ATTCAT------------------------------------------------------------------AGTT-TGCTGTCCAC-------------------------TG-TTATCATTT--T----GCTC-G--T---CTC-GATGTTCCCT-ATTGA-------TTTG-TTATGCCAGTGTTTTTATTTTT---TATT----------------TGCCTTATA-TTTTCTTTAA-TTTTGCCT--AACAGCGCCCCAAACCCGAAAATGATCCGCCGCCGCGTTACACCTCCATTAATCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................AAAACGCTTCCGTGGGCTCTCC---------------------------T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200200000000000000
.......................................CCGGATGAGAATATTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
......................................TCCGGATGAGAATATTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
.......................................................................TGTAGAATGCTGGTAAAGC-----------------------------------C----A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
...................................................................................................................................................ATCGTTCTGCTATCGT-CACTAAACAAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
......AAC------ACGGA------TGGCTCGGGCAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
........................................CGGATGAGAATATTTTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
...............................................................................................................................................GCTTATCGTTCTGCTATCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
.....................................GTCCGGATGAGAATATTTTGGTAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
.............................CTCGGGCAGTCCGGATGAGAATATTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
..................................................................................................................................................TATCGTTCTGCTATCGT-CACTAAACAAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TCAT------------------------------------------------------------------AGTT-TGCTGTA..............................................................................................................................................................................................................................15200.05100000000010000000
droSec2
C-----AAC------ACGGA------TGGCTCGGGCAGTCCGGATGAGAATATTTTGGTAGGTTATCTCTGTGTAGAATGCTGTTAAAGC-----------------------------------C----AACAACTAACT-CGCTTATCGTTCTGCTATCGT-CACTAAACAAACGA--AAAACGCTTCCGTGGGCTCTCC---------------------------TCCACCGCTCTTG------------TCTA----------------------------------------------------------------------------------------TTCTCTGTGTAAGTCCAGTC--ATCC----AAGTG----------------ATTCAT------------------------------------------------------------------AGTT-TGCTGTCCAC-------------------------TG-TTATCATTT--T----GCTC-G--T---CTC-GATGTTCCCT-ATTGA-------TTTG-TTATGCCAGTGTTTTTATTTTT---TATT----------------TGCCTTATA-TTTTCTTTAA-TTTTGCCT--AACAGCGCCCCAAACCCGAAAATGATCCGCCGCCGCGTTACACCTCCATTAACCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................GGCAGTCCGGATGAGAATATTTTGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
...................A------TGGCTCGGGCAGTCCGGATGAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
..............................................................................................................................................................ATCGT-CACTAAACAAACGA--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
...................................................................................................................................ACAACTAACT-CGCTTATCGTTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
..................GA------TGGCTCGGGCAGTCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
droYak3
-------AT------ACGGA------TGGCTCGGGCAGCCCGGATGAGAATATTTTGGTAGGTTATCTCTGTGTAGAATGCTGTTAAA-C-----------------------------------C----AACAACTAACT-CGCTTATCGTTCTGCAA-CAT-CACTAAACAAATGA--AAAACGCTACTATGGGTTCTCCAC---------------------CTCCTCCTCCACTCTTG------------TTTATCTCT--------------------------------------------GTGTGACGTC------------------C--------CACTGTGCGTGTAAGTCCAGTC--ATCC----AAATG----------------ATTCAT------------------------------------------------------------------AGCT-TGCTGTCCAC-------------------------TG-TTATCGCTT--C----GCTA-G--T---CTC-GATGTTCCTT-ATTGA-------TTTG-TTATGCCAGTGTTTTTATTTTT---TATT----------------TGCCTTATC-TTTTCTTTAA-TTTTGCCT--AACAGCGCCCCAAACCCGAAAATGATCCGCCGCCGCGTTACACCTCCATTAATCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................AGCCCGGATGAGAATATTTTGCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
...................................................................................................................................................................................................................................................................................................................GTGTGACGTC------------------C--------CACTGTGCGT.............................................................................................................................................................................................................................................................................................................................................................2111.00100000100000
................................................................................................................................................................................................................................................................TATCTCT--------------------------------------------GTGTGACGTC------------------C--------CACTGTGCGT.............................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCTT--C----GCTA-G--T---CTC-GAT............................................................................................................................................................2111.00101000000000
droEre2
C-----AAT------ACGGA------TGGCTCGGGCAGCCCGGATGAGAATATTCTGGTAGGTTATCTCTGTGTAGAATGCTGTTTAA-C-----------------------------------C----AAAAACTAACT-CGCTTCTCGTTCTGCAA-CAT-CACTAAACAAATGA--AATACGCTTCCATGGGCTCTCC---------------------------TCCTCCACTCTTG------------TTTGTTTCT--------------------------------------------GTGCGAAA------------------ACC--------CACTGTGCGTGTAAGTTCAGTC--ATCC----AAGTG----------------ATTCAT------------------------------------------------------------------AGCT-TGTTGTCCAC-------------------------TG-TTATCTTTT--C----GCTT-G--A---CTC-AATGTTCCCT-ATTGA-------TTTG-TTATGCCAGTGTTTCTATTTTT---TATT----------------TGCCTTATT-TTCTCTTTAA-TTTTGCCT--AACAGCGCCCCAAACCCGAAAATGATCCGCCGCCGCGTTACACCTCCATTAATCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................CTTCTCGTTCTGCAA-CAT-CAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAC-------------------------TG-TTATCTTTT--C----GCT............................................................................................................................................................................2111.0011000000
.......AT------ACGGA------TGGCTCGGGCAGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100

Generated: 05/16/2015 at 09:40 PM