ID:

dvi_18700

 Coordinate:

scaffold_13049:6589478-6589766 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-58.5 -58.3 -58.2

Flybase annnotation

CDS [Dvir\GJ12291-cds]; exon [dvir_GLEANR_12269:9]; CDS [Dvir\GJ12291-cds]; exon [dvir_GLEANR_12269:10]; intron [Dvir\GJ12291-in]

Repeatable elements

NameClassFamilyStrand
(CAGT)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACGTGGAGACGCGTTCCCTTTATCGCGATGACTCTCCAGGCGTGGTACAGGTGTGGTATATCTATATAACTGACTGACTGATTGAGTGGCTGACTGACAGAGTGACAGATAGATTGACTGATGAATTCGCTAAGTGATTGAGTGACTGATGCACTGACTAAGCAGTCACGTTCTGACCAACTGGCAAGTAATTGACTAGCTCATGGACTAACTGATGTACAAGTGACTAACTGATTGAGAAAGTAATTGAACTTTAGATAGATGTTACCGCGAACAGTCTAACATTTGAATAAAAGCCCGCTAACGCCGGACTTTAACTCGCTTCACTTTCGATTTTAGGGTAAAATTCAGATGTGGATAGAGCTGTACGAGCAGAACATGTTCATTCC
**************************************************....(((..((((((....(((....(((.....(((.....))).....)))..)))))))))..)))..((((.(((..((((((.((((((((((.(((..((((..((((((((.(((((..((....))..)).)))))))).)))......(((.((((.((.(((...(((..((.....))..)))..))).)).)))).)))..))))..)))..))))).............((((((.((....)).)).)))).)))))..)))))).))).)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M028
head
 M027
male body		 V053
head
 M061
embryo
 SRR060684
140x9_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 M047
female body
 V047
embryo
 V116
male body		 SRR060663
160_0-2h_embryos_total
 SRR060670
9_testes_total
 SRR060681
Argx9_testes_total
 SRR060667
160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060689
160x9_testes_total
 SRR060657
140_testes_total
 SRR060659
Argentina_testes_total
 SRR060655
9x160_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060671
9x160_males_carcasses_total
 SRR060683
160_testes_total
 SRR060658
140_ovaries_total
 SRR060654
160x9_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060680
 9xArg_testes_total
.....................................................................................................................................................................................................................................................................................................................................ACTTTCGATGGTAGGATA.............................................. 18 3 20 8.70 174 0 40 0 1 25 26 30 0 0 0 0 0 0 14 16 0 8 1 7 0 3 0 0 0 2 0 0 0 0 0 0 1
.........................................................................................CTGACTGTGAGAGTGACAGCT....................................................................................................................................................................................................................................................................................... 21 3 9 5.67 51 28 2 4 12 0 0 0 3 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CTGACTGTGAGAGTGACA.......................................................................................................................................................................................................................................................................................... 18 2 12 2.92 35 15 2 6 0 0 0 0 9 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................CTGACTGTGAGAGTGACAG......................................................................................................................................................................................................................................................................................... 19 2 9 2.11 19 10 2 4 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................GCCTGACTGTGAGAGTGACAGAT....................................................................................................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ACTGATTGAGTGGCTGACTGA.................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TATCGCGATGACTCTCCAGGCGTGG........................................................................................................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................GCCTGACTGCGAGAGTGACAG......................................................................................................................................................................................................................................................................................... 21 3 11 0.82 9 0 0 0 0 0 3 0 0 0 0 1 0 0 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................GCCTGACTGCGAGAGTGACA.......................................................................................................................................................................................................................................................................................... 20 3 17 0.76 13 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 6 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GATGAACTCGCAAGGTGATT.......................................................................................................................................................................................................................................................... 20 3 5 0.60 3 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CTCCAGAGGTGGTAGAGGT................................................................................................................................................................................................................................................................................................................................................. 19 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................GGCTGACTGTGAGAGTGACAGCT....................................................................................................................................................................................................................................................................................... 23 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................TTGATCTTTAGAAAGATGCTAC......................................................................................................................... 22 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................ACTTTCGATGGTAGGGTA.............................................. 18 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CTGACTGCGAGAGTGACAGCT....................................................................................................................................................................................................................................................................................... 21 3 7 0.29 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CTGACTGCGAGAGTGACA.......................................................................................................................................................................................................................................................................................... 18 2 12 0.25 3 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................ACTTTCGATGTTAGGATA.............................................. 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CCTGACTGTCAGAGTGACA.......................................................................................................................................................................................................................................................................................... 19 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CTGACTGCGAGAGTGACAG......................................................................................................................................................................................................................................................................................... 19 2 8 0.25 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................TTGAATTGGAGCCCGCTAAC.................................................................................... 20 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ACCGATTGAGTGGCTTAGTGA.................................................................................................................................................................................................................................................................................................... 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................GATTGAGTGGCTTAGTGA.................................................................................................................................................................................................................................................................................................... 18 2 16 0.13 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................CACGTAATTGACTAGCTTTTG........................................................................................................................................................................................ 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TGACTGCGAGAGTGACAGCT....................................................................................................................................................................................................................................................................................... 20 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GATGAACTCGCAAGGTGAT........................................................................................................................................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTCTGACCAATAGGCACGT........................................................................................................................................................................................................ 19 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................CACTTTCGATGGTAGGATA.............................................. 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................................................................CGAACGGTTTAACATTCGA.................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................................................................................AACTTTCGATGGTAGGGTA.............................................. 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................ACTTTCGATGGTAGGATAA............................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................GCGATAGTAATTGAACTTA...................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CCTGACTGCGAGAGTGACA.......................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................AACTGGCAAGGAATTGGCGA............................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TGACTGCGAGAGTGACAG......................................................................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGCACCTCTGCGCAAGGGAAATAGCGCTACTGAGAGGTCCGCACCATGTCCACACCATATAGATATATTGACTGACTGACTAACTCACCGACTGACTGTCTCACTGTCTATCTAACTGACTACTTAAGCGATTCACTAACTCACTGACTACGTGACTGATTCGTCAGTGCAAGACTGGTTGACCGTTCATTAACTGATCGAGTACCTGATTGACTACATGTTCACTGATTGACTAACTCTTTCATTAACTTGAAATCTATCTACAATGGCGCTTGTCAGATTGTAAACTTATTTTCGGGCGATTGCGGCCTGAAATTGAGCGAAGTGAAAGCTAAAATCCCATTTTAAGTCTACACCTATCTCGACATGCTCGTCTTGTACAAGTAAGG
**************************************************....(((..((((((....(((....(((.....(((.....))).....)))..)))))))))..)))..((((.(((..((((((.((((((((((.(((..((((..((((((((.(((((..((....))..)).)))))))).)))......(((.((((.((.(((...(((..((.....))..)))..))).)).)))).)))..))))..)))..))))).............((((((.((....)).)).)))).)))))..)))))).))).)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M027
male body		 SRR060662
9x160_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 M047
female body
 SRR060680
 9xArg_testes_total
 V116
male body		 SRR060679
140x9_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060689
160x9_testes_total
 SRR060665
9_females_carcasses_total
..........................................................................................................................................................................................................................................................................TGGGGCTTGCCAGATTGTGA....................................................................................................... 20 3 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................CGAAGTGAAAGCTAAAATCGT................................................ 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........GCACGGGATATAGCGCAACT...................................................................................................................................................................................................................................................................................................................................................................... 20 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGAGGGGTCCGCCCCATG..................................................................................................................................................................................................................................................................................................................................................... 18 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................AAGTGGAAGCTTAAATCACA............................................... 20 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................TCGTCAGTGCGAGACTGC................................................................................................................................................................................................................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................GGGCGAGTGCGGGGTGAAATT........................................................................ 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................TTCGGGCGCTAGCAGCCTG............................................................................. 19 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................CTTTTTTTCGGGCAAGTGCG.................................................................................. 20 3 10 0.20 2 0 0 0 0 0 0 0 0 0 1 1 0 0
............................................................AGATATATTGAATGACGGAGT.................................................................................................................................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GCTTGTCTGATTTTAAACTTG.................................................................................................. 21 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................GGGCGACACCGGCCTGAAA.......................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................GTCCCATTTTAAGGCTACT.................................. 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................................................................................................AGAAATGGCGCGAAGTGAAA........................................................... 20 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................ACATGTTCGATGATGGACT........................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................GGGTGATACCGGCCTGAA........................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:6589428-6589816 - dvi_18700 ACGTGGAGACGCGTTCCCTTTATCGCGATGACTCTCCAGGCGTGGTACAGGTGTGGTAT---A--TCT-------------ATATAACTG-----------------------------------------------------------------------------------------------ACTGACTGATT----GAGTGGCTGACTGACAGAGTGACAG----ATAGATTGACTGATG--------AATTCGCTA-------------------------------------------------------------------------------------------A-------------------------GTGATTG---------------------------------AGTG-------ACT--------------GATGCACT------------GACTAAGCAGTCACGTTCTGACCAACTGGCAA-G-TAATTGACTAGCTCATGGACT----A-------------------------------------ACTGAT-GTA-CAAGTGACTAACTGATTGAGAAAGTAATT-----GAACTTTAGATAGATGTTACCGCGAAC--AGTCTAACATTTGAATAAAAGCC----------------------------------------------------------------------------CGCTAACGCCGGACTTTAACTCGCTTCACTTTCGATTTTAGGGTAAAATTCAGATGTGGATAGAGCTGTACGAGCAGAACATGTTCATTCC
droMoj3 scaffold_6491:100319-100520 - TGACT--------------------------------------------------------------------------------GACTG-----------------------------------------------------------------------------------------------ACA------------GAGCGACGAAATGACCGAGTGACAG----ATTGACAGAGTGACA--------GAGTCACTG-----AA---------------------------------------------------------------------------------------------------------------CAACAGGACGACT---------------------GACTGACAGAGCGG-----CG--------AAAT--------------------GA-------------------CAGAGTGACAGAG-CCACTGAACAACAATACAACT----G----------------ACTGACAG-----------------AA-----CAACGAAATGACAGAGTGACAGAGCCACT-----GAA--------------------GAAC--AGTACA---ACTGACTAAAAGACCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15074:7013758-7013931 + TAACT--------------------------------------------------------------------------------GACTG-----------------------------------------------------------------------------------------------ACTAACT--------GACTGACTAACTGACTG----ACTA----ACTGACTGACTAACT--------GACTGACTA-----ACTGA----C-------------------------------------------------------------------------------------------------------TGACTAACTGACT---------------------G----ACTAACTGA-----CT--------AACT--------------------GA-------------------CTAACTGACTGAC-T------------------------A----ACTGACTGACTGACT-------------ACCTGACCAAC---------TGACTGACTGACTGGCCAAGTGACTAACTTGA------A--------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:11030981-11031090 + ATGGA---------------------------------------------------------------------------------ATTG-----------------------------------------------------------------------------------------------ACTGACTGAAT----GACTAACTGACTGACAG------------ACTAACGGACTGACT--------GACTG--------------------------------------------------------------------------------------------------------------------------------ACTAACT---------------------G---------------------------------ATTGGGTGGGTGGTTGTGCGGGTGA--AGCAATTGT----CTGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------CA
dp5 XL_group1e:5228760-5228910 + TGAT------------------------------------------------------------------------------------TG-----------------------------------------------------------------------------------------------ACT------------CAATGACTGACTGACTGAAGGATAT----ATTGACTAACTGATG--------GTTGGA----------------------------------------------------------------------------------CTTCATTCGGTAAATGAATGAAT--GACGGTTGGTTGGTT---GGACTCACTGACTGACGGATTGACG-----G----AT-------TGACT--------------GATTGACTGACT--------GA-------------------CTGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_15:638317-638451 - CTGAA-----------------------------------------------------------------------------------TG-----------------------------------------------------------------------------------------------ACTGACTGACT----GACTGACTGACTGACTG------------ACTGACTGACTGACC--------GATTGACTG-----ACTGTTTGAT-------------------------------------------------------------------------------------------------------TCACAGACTCACTGAGT--------GAATGACTG-----A-------------A--------TGAGT--------------------GA-------------------CTGAGTGACT-----------------------------G----ACTTGCTA----ACC-----A---------------------------------------------AA----------------------------------------------------------TAACCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13117:2727889-2728008 - ATATCT--------------------------------------------------------------------------------ATAG---------------------------------------------------------------ATA------------------TGTATATTG--ATTGACTGATT----GACTGTCTG--------------------ACTGACTGACTGTCT--------GATTGACTG-----AC---------------------------------------------------------------------------------------------------------------TGACTGGCTGACT---------------------GACTGACTGATCGC-----TG--------A------------TCT--------GACTGA--TGACATGA-----------------------------------------------------------------------------------------------------------------------TCT-------------G--------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000394714:86149-86252 - TGAAT--------------------------------------------------------------------------------GATTG-----------------------------------------------------------------------------------------------ACT------------AATTGAATGATTGACTAACTGAATG----ATTGACTAACTGATT--------GATTGATTG----------------------------------------------------------------------------------------------------------------------------ACTAACTGACT-----------------A----AC-------TGACT--------------GACTGACTGACT--------GA-------------------CTGAC----C-----------------------------G----A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C
droKik1 scf7180000302577:1524033-1524183 - ACTA----------------------------------------------------------------------------------ACTG-----------------------------------------------------------------------------------------------ACTGAATGAAT----GACTGACTGACTGGCGAACTGACTG----ACTGAATAACTGACG--------AACTGACGA-------------------------------------------------------------------------------------------A-------------------------CTGACGAACT----------------GACGAACTG-----A-------------C--------TGACTCGCTGGATGACT-------------------------------AAC-----------------------------------------TCACCA----AC----------------------------------------------TGAGTGAGTACTT-----AAAGCAATGGCAAACATTA----------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453872:503544-503653 - CCAAT-----------------------------------------------------------------------------------TG-----------------------------------------------------------------------------------------------CCTGATTGACT----CACTGGCTGACTGACTGACTGACTG----ATTGACTAATTGACT--------AAATGACTG---------A----T-------------------------------------------------------------------------------------------------------TGACTAACTGGCT---------------------G----AT-------TGACT--------------TGCTGACTGACT-------------------------------GAC----T-------------------------------------GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG
droEle1 scf7180000491006:1189547-1189727 - ACAGCT---------------------------------------------------------------------------AAGTAATTG-----------------------------------------------------------------------------------------------ACT------------AACTGACTAACTGACTAACTGACTA----ACTGACTAACTGTCT--------AACTGACTA-----AC---------------------------------------------------------------------------------------------------------------TGACTAACTGACT---------------------A----AC-------TGACT--------------AACTGACTATCT--------GA-------------------CTAACTGACTAGTTAGTCACAATGTGCGACTTAGTGACTA----TTTGGCTA----ACT----------------------------------GACTTACTGAATATCTCACTATTA-------------G--------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779914:688598-688816 + CTAACT-------------------------------------------------------------------------------GACTG-----------------------------------------------------------------------------------------------ACTGACT--------GATTGACTGACTGACTGACTGACTG----ACTGACTGACTGACT--------GACTGACTG---------A----C-------------------------------------------------------------------------------------------------------TGACTGACTGACT---------------------G----AC-------TGACT--------------GACTGACTGACT--------GA-------------------CTGACTGACTG---------------------------------ACTGACTG----ACT-----GACTCACTGACTCACTGACTGAA-TGACTAACTCGCCAACTGAGTGAGTACTT-----AAAGCAATGGCAAACATTAGCATAAAGCTGGGCTATCA-----------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------TT
droBia1 scf7180000301760:732261-732410 - GACTG---------------------------------------------------------------------------------ATGG-----------------------------------------------------------------------------------------------ACTGACT------------GATGGACTGACTGGGTGACAGACTGACTGACTAGCTGACC--------AATTGGCTG-------------------------------------------------------------------------------------------A-------------------------CTGACTG---------------------------------AGAG----G-----CCAACAGACAGACT--------------------GA-------------------CTGGCTGACTGGC---------------------T----GACTGATTGACTG----ACT----------------------------------GACTGACTGATTGATTGACTGACT-------------G--------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000410393:20894-21123 - CT-----------------TCATCGCGATAGCTTTAAAACTGAGAGACTAGTTCGCATA---GAAACG-----GACAGACTGACAGACTG-----------------------------------------------------------------------------------------------ACA------------GACTGACAGACTGACAGACTGACAG----ACTGACAGACTGACAGACTGACAGACTGAC---------AGA----C-------------------------------------------------------------------------------------------------------TGACA-----------------------------GACTGACAGACTGA-----CA--------GACT--------------------GA-------------------CAGACTGACAGAC-TGACAGACTGACAGACTGACA----GAC----------------TGACAG-----------------AC-----TGACAGACTGACAGACTGACAGACTGACA-------------G--------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000408940:234-503 + ACTGACAGAC--------------------------------------T------------------------GACAGACTGACAGACTG-----------------------------------------------------------------------------------------------ACA------------GACTGACAGACTGACAGACTGACAG----ACTGACAGACTGACAGACTGACAGACTGAC---------AGA----C-------------------------------------------------------------------------------------------------------TGACA-----------------------------GACTGACAGACTGA-----CA--------GACT--------------------GA-------------------CAGACTGACAGAC-TGACAGACTGACAGACTGACA----GAC----------------TGACAG-----------------AC-----TGACAGACTGACAGACTGACAGACTGACA-------------G---------------------------------ACTAACAGACTGACAGACTGACAGACTGACAGACTGACAGACCTTGTTTAACTTTTTTCTGTTTATATC----------------------------------------------TTTCGAT-----------------------------------------------------TT
dm3 chr3L:8900297-8900673 - ATGTGGAAACCCGCTCCCTTTGCCGCGATGATTTTCCAAATGTCGAACAGGTAAGTTAG---GCAACGAAGTG------------------------TAGGTGCAAACCTATCCCAATGCAATGACTCACTCACATAGTTAGAATATCTAAAAATAGCATGGCCAAATTAAAGCTATACATATAT--GGCCAAAAAGTGTCTAGA--------------------------------------------------------CAGTCTCTATCAAT-A---TTCAACTAATCTGTGAGAAATA------TGT-TGATA-AATGTTGATAAAACATATTACGTTTTATTTTCGATATAAAAAAGTATTATTTTTATTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------TATA----------------------------------------------------------------------------------TATTTATAATAAACCAAACTACTAATGCAACCCATTG------------------TCCAGGGCAAACTACAACTGTGGATAGAGCTGTTCGAGGCGAACATCTATGTGCC
droSim2 x:14689665-14689851 + GTGGGGGC-----------------------------------------------------------T-------------GACTAACTG-----------------------------------------------------------------------------------------------ACTAACT------------GACAGACTGACTAGCCGACTT----AGCGACTAACTGACC--------AACTGACTA-----ACTGACAAAC-TGGCTT---------------------------------------------------------------------A-------------------------CTGACTA--------AGT--------GACTAACTG-----A-------------C--------TTACT--------------------GA-------------------CTAAGTGACT-----------------------------A----ACTGACTA----ACT-----G----ACTAACTGACAGAC-ACACTAGCTGACTAGCCGACTTAGCGACTAACT-------------G--------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_0:1170821-1171205 - ATGTGGAAACCCGCTCCCTCTGCCGCGATGATTTTCCAAATGTTGAACAGGTAATAAAA---ACAACGAAGTG--TAGTGT--------------------AGCAAACTTATCCCAATGTAATGACTCACTT--TTAGTTAAAATTTCTACAAATAGCATTGCCAAATTAAAGCTATACATTTAC--GACCAAAAACAGTCTAGA--------------------------------------------------------GAGCCGTTATCAAT-ATTGTTTACCTAATCTGTGACAAATTGCATTATGAGTAATA-ATCATTGATAAAACATATTTCGTTTTATTTTAGATATAAAAAAGTAATATTTTCATTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------TATA------------------------------------------------------------------------------------TTTATAATAAACCAATCTACTAATGCAACCCATTG------------------TCCAGGGCAAACTCCAACTGTGGATAGAGCTGTTCGAGGCGAACATCTATGTGCC
droYak3 3L:3013562-3013892 + ATGTGGAAACCCGCTCCCTTTGCCGAGATGATTTTCCAAATGTCGAACAGGTAATA--GGAAACA------------------------------ATTACGCGCTAACCTATCCCAATGAAATGACTCATTG--ATGGTAAAAATATCCAAAAATA------------------TGTACATCTAT--TGCCATAAAAAATCATG--------------------------------------------------------------------AAA-ATGAATCAGCTTATCTGTGACAAATGGCATTTTAGCTAGCA-ATCATAGATAACA-TTATGTAGTTTAATTTGAGATATAAATTTGT--TTTTTTTGGTTAAGT---AAACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTAATGCAAACCATTG------------------TCCAGGGCAAACTGCAACTGTGGATAGAGCTGTTCGAGGCGAACATCTATGTGCC
droEre2 scaffold_4784:5143106-5143441 + ATGTGGAAACCCGCTCCCTTTGCCGAGATGATTTTCCCAATGTCGAGCAGGTAATTTAA---ACACCAAAAGG--C--TTTTATGAGTTAACCAAATTACGCGCTTACCTATCCCAATGAAGTGACTCATTT--GTAGTAAAAATATC--------------------------TGTACATGTAT--TGCCATAAGGAGTCTAGA------------------------------------------------------------------CAAA-ATTAACCACCTAATCAGTGACAAACAGCATTACAAATAGCGCATCATTGATAACA---------------------------------------------G----------------------------------------------------------------------------------------------A--TAG-------------------------------------------------------------------------------------------AT-----TT--------ATATAAAATTAGAGTTTT-----------------------------------------------------------TACATA------------------------------------------------------------------TTGTGCTAATGCCACCCATTG------------------TCCAGGGCAAACTCCAACTGTGGATAGAGCTGTTCGAGGCGAACATCTACGTGCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ACGTGGAGACGCGTTCCCTTTATCGCGATGACTCTCCAGGCGTGGTACAGGTGTGGTAT---A--TCT-------------ATATAACTG-----------------------------------------------------------------------------------------------ACTGACTGATT----GAGTGGCTGACTGACAGAGTGACAG----ATAGATTGACTGATG--------AATTCGCTA-------------------------------------------------------------------------------------------A-------------------------GTGATTG---------------------------------AGTG-------ACT--------------GATGCACT------------GACTAAGCAGTCACGTTCTGACCAACTGGCAA-G-TAATTGACTAGCTCATGGACT----A-------------------------------------ACTGAT-GTA-CAAGTGACTAACTGATTGAGAAAGTAATT-----GAACTTTAGATAGATGTTACCGCGAAC--AGTCTAACATTTGAATAAAAGCC----------------------------------------------------------------------------CGCTAACGCCGGACTTTAACTCGCTTCACTTTCGATTTTAGGGTAAAATTCAGATGTGGATAGAGCTGTACGAGCAGAACATGTTCATTCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................ACTGATT----GAGTGGCTGACTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
....................TATCGCGATGACTCTCCAGGCGTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000010000000000000000000000000000000
droMoj3
TGACT--------------------------------------------------------------------------------GACTG-----------------------------------------------------------------------------------------------ACA------------GAGCGACGAAATGACCGAGTGACAG----ATTGACAGAGTGACA--------GAGTCACTG-----AA---------------------------------------------------------------------------------------------------------------CAACAGGACGACT---------------------GACTGACAGAGCGG-----CG--------AAAT--------------------GA-------------------CAGAGTGACAGAG-CCACTGAACAACAATACAACT----G----------------ACTGACAG-----------------AA-----CAACGAAATGACAGAGTGACAGAGCCACT-----GAA--------------------GAAC--AGTACA---ACTGACTAAAAGACCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGCCACT-----GAA--------------------GAAC--AGTAC.........................................................................................................................................................................................25122.67321530095
................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGCGG-----CG--------AAAT--------------------GA-------------------CAGAGT...............................................................................................................................................................................................................................................................................................................................................2542.5010610012
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAG-----------------AA-----CAACGAAATGACAGAGT............................................................................................................................................................................................................................................2532.337500020
................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGCGG-----CG--------AAAT--------------------GA-------------------CAGAGTG..............................................................................................................................................................................................................................................................................................................................................2642.259800010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAG-----------------AA-----CAACGAAATGACAGAGTG...........................................................................................................................................................................................................................................2632.006410010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----G----------------ACTGACAG-----------------AA-----CAACGAAATGACA................................................................................................................................................................................................................................................2521.002100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----G----------------ACTGACAG-----------------AA-----CAACGAAATGACAGA..............................................................................................................................................................................................................................................2721.002200000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAG-----------------AA-----CAACGAAATGACAGAGTGAC.........................................................................................................................................................................................................................................2831.003200010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGCCACT-----GAA--------------------GAAC--AGTACA---AC...................................................................................................................................................................................28120.759110061
................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGCGG-----CG--------AAAT--------------------GA-------------------CAGAG................................................................................................................................................................................................................................................................................................................................................2440.753210000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAG-----------------AA-----CAACGAAATGACAGAGT............................................................................................................................................................................................................................................2430.672100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGTGACAGAGCCACT-----GAA--------------------G...................................................................................................................................................................................................25140.649800010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----G----------------ACTGACAG-----------------AA-----CAACGAAATGACAG...............................................................................................................................................................................................................................................2620.501100000
................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGCGG-----CG--------AAAT--------------------GA-------------------CAGAGTGA.............................................................................................................................................................................................................................................................................................................................................2740.502200000
.......................................................................................................................................................................................................................................................................................................................................................................................................T---------------------GACTGACAGAGCGG-----CG--------AAAT--------------------GA-------------------CAG..................................................................................................................................................................................................................................................................................................................................................2640.502200000
.......................................................................................................................................................................................................................................................................................................................................................................................................T---------------------GACTGACAGAGCGG-----CG--------AAAT--------------------GA-------------------CA...................................................................................................................................................................................................................................................................................................................................................2540.502200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------ACTGACAG-----------------AA-----CAACGAAATGAC.................................................................................................................................................................................................................................................2320.501100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGACAG-----------------AA-----CAACGAAATGACAG...............................................................................................................................................................................................................................................2420.501100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------ACTGACAG-----------------AA-----CAACGAAATGACAGA..............................................................................................................................................................................................................................................2620.501100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----G----------------ACTGACAG-----------------AA-----CAACGAAATGAC.................................................................................................................................................................................................................................................2420.501100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGAGCGG-----CG--------AAAT--------------------GA-------------------CAGAGT...............................................................................................................................................................................................................................................................................................................................................2440.502200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----G----------------ACTGACAG-----------------AA-----CAACGAAATGA..................................................................................................................................................................................................................................................2320.501100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----G----------------ACTGACAG-----------------AA-----CAACGAAATG...................................................................................................................................................................................................................................................2220.501100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----G----------------ACTGACAG-----------------AA-----CAACGAAATGAG.................................................................................................................................................................................................................................................2420.501100000
.......................................................................................................................................................................................................................................................................................................................................................................................................T---------------------GACTGACAGAGCGG-----CG--------AAAT--------------------GA-------------------C....................................................................................................................................................................................................................................................................................................................................................2440.502200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----G----------------ACTGACAG-----------------AA-----CAACGAAATGACAGAG.............................................................................................................................................................................................................................................2820.501100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGCCACT-----GAA--------------------GAAC--AGTA..........................................................................................................................................................................................24120.425400001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGACAGAGCCACT-----GAA--------------------GAAC--AG............................................................................................................................................................................................2680.383000021
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------------------CAGAGTGACAGAG-CCACTGAACAAC...........................................................................................................................................................................................................................................................................................................................27200.357700000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGCCACT-----GAA--------------------GAAC--AGTACA---.....................................................................................................................................................................................26120.334120001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-----------------AA-----CAACGAAATGACAGAGTGACAG.......................................................................................................................................................................................................................................2630.331100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAG-----------------AA-----CAACGAAATGACAGAGC............................................................................................................................................................................................................................................2530.331000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGAGCCACT-----GAA--------------------GAAC--AGTACA---AC...................................................................................................................................................................................27120.334200020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGTGACAGAGCCACT-----GAA--------------------GAAC--..............................................................................................................................................................................................28130.314300010
.............................................................................................................................................................................................................................................................................................................................................................................................................................GACTGACAGAGCGG-----CG--------AAAT--------------------GA-------------------CAGA.................................................................................................................................................................................................................................................................................................................................................2640.251100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GACTGACAGAGCGG-----CG--------AAAT--------------------GA-------------------CAG..................................................................................................................................................................................................................................................................................................................................................2540.251100000
.......................................................................................................................................................................................................................................................................................................................................................................................................T---------------------GACTGACAGAGCGG-----CG--------A.................................................................................................................................................................................................................................................................................................................................................................................................1840.251010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ACTGACAGAGCGG-----CG--------AAAT--------------------GA-------------------CAGA.................................................................................................................................................................................................................................................................................................................................................2540.251100000
.......................................................................................................................................................................................................................................................................................................................................................................................................T---------------------GACTGACAGAGCGG-----CG--------AAAT--------------------GA-------------------CAT..................................................................................................................................................................................................................................................................................................................................................2640.251100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGAGCGG-----CG--------AAAT--------------------GA-------------------CAGA.................................................................................................................................................................................................................................................................................................................................................2240.251100000
................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGCGG-----CG--------AAAT--------------------GA-------------------CAG..................................................................................................................................................................................................................................................................................................................................................2240.251100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ACTGACAGAGCGG-----CG--------AAAT--------------------G.........................................................................................................................................................................................................................................................................................................................................................................2040.251100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT--------------------GA-------------------CAGAGTGACAGAG-CCACTGA................................................................................................................................................................................................................................................................................................................................25200.255500000
.......................................................................................................................................................................................................................................................................................................................................................................................................T---------------------GACTGACAGAGCGG-----CG--------AAAT--------------------G.........................................................................................................................................................................................................................................................................................................................................................................2240.251100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGCCACT-----GAA--------------------GAAC--AGTACA---A....................................................................................................................................................................................27120.253210000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CTGACAGAGCGG-----CG--------AAAT--------------------GA-------------------CAGAGTGA.............................................................................................................................................................................................................................................................................................................................................2840.251000010
................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGCGG-----CG--------AAAT--------------------GA-------------------CAGAGTGAC............................................................................................................................................................................................................................................................................................................................................2840.251100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GACTGACAGAGCGG-----CG--------AAAT--------------------GA-------------------CA...................................................................................................................................................................................................................................................................................................................................................2440.251100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGTGACAGAGCCACT-----GAA--------------------GA..................................................................................................................................................................................................26140.213200010
................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGCGG-----CG--------AAAT--------------------GA-------------------CAGAGC...............................................................................................................................................................................................................................................................................................................................................25150.203200010
...............................................................................................................................................................................................................................................................TCACTG-----AA---------------------------------------------------------------------------------------------------------------CAACAGGACGACT---------------------GACT...........................................................................................................................................................................................................................................................................................................................................................................................................................25200.204200020
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGCCACT-----GAA--------------------GAAC--AGT...........................................................................................................................................................................................23120.172100010
........................................................................................TG-----------------------------------------------------------------------------------------------ACA------------GAGCGACGAAATGACCGAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.153000003
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GG-----CG--------AAAT--------------------GA-------------------CAGAGTGACAGAG-CC.....................................................................................................................................................................................................................................................................................................................................2570.141000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGAGTGACAGAGCCACT-----GAA--------------------GA..................................................................................................................................................................................................25140.142200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGG-----CG--------AAAT--------------------GA-------------------CAGAGTGACAG..........................................................................................................................................................................................................................................................................................................................................2470.141000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGACAGAGCCACT-----GAA--------------------GAAC--AG............................................................................................................................................................................................2580.131000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAGCCACT-----GAA--------------------GAAC--AGTAC.........................................................................................................................................................................................2680.131100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGTGACAGAGCCACT-----GAA--------------------GAAC--AG............................................................................................................................................................................................2780.131100000
.......................................................................................................................................................................................................................................TGACAGAGTGACA--------GAGTCACTG-----AA---------------------------------------------------------------------------------------------------------------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGCCACT-----GAA--------------------GAAC--AGTACA---ACT..................................................................................................................................................................................29120.081000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGCCACT-----GAA--------------------GAAC--AG............................................................................................................................................................................................22120.081100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGCCACT-----GAA--------------------GAAC--AGTACA---.....................................................................................................................................................................................24120.081100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGAGTGACAGAGCCACT-----GAA--------------------GAAC--..............................................................................................................................................................................................27130.081100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGACAGAGCCACT-----GAA--------------------GAAC--A.............................................................................................................................................................................................25130.081100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGTGACAGAGCCACT-----GAA--------------------GAA.................................................................................................................................................................................................27140.071100000
.......................................................................................................................................................................................................................................................................................................................................................................................................T---------------------GACTGACAGAGCGG-----CG--------AAAT--------------------GA-------------------TT...................................................................................................................................................................................................................................................................................................................................................25140.071100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGTGACAGAGCCACT-----GAA--------------------GA..................................................................................................................................................................................................24140.071100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGAGTGACAGAGCCACT-----GAA--------------------G...................................................................................................................................................................................................24140.071100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGCCACT-----GAA--------------------GAAC--AGTAA.........................................................................................................................................................................................25150.071000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACT-----GAA--------------------GAAC--AGTACA---ACTGAC...............................................................................................................................................................................25180.061000010
...................................................................................................................................................................................................................TGACCGAGTGACAG----ATTGACAGAGTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
.....................................................................................................................................................................................................................................ATTGACAGAGTGACA--------GAGTCACTG-----AA---------------------------------------------------------------------------------------------------------------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACAGAGTGACAGAGCCACT-----GA.........................................................................................................................................................................................................................24200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGTGACAGAGCCACT-----GAA--------------------GAAA--..............................................................................................................................................................................................28200.051100000
...........................................................................................................................................................................................................................................AGAGTGACA--------GAGTCACTG-----AA---------------------------------------------------------------------------------------------------------------CAACAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
......................................................................................ACTG-----------------------------------------------------------------------------------------------ACA------------GAGCGACGAAATGACCGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
.................................................................................................................................................................................................................AATGACCGAGTGACAG----ATTGACAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-----GAA--------------------GAAC--AGTACA---ACTGAC...............................................................................................................................................................................21200.051000010
....................................................................................................................................................................................................................GACCGAGTGACAG----ATTGACAGAGTGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
...............................................................................................................................................................................................................................................................TCACTG-----AA---------------------------------------------------------------------------------------------------------------CAACAGGACGACT---------------------GACA...........................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
....................................................................................................................................................................................................................GACCGAGTGACAG----ATTGACAGAGTGACA--------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000010
...............................................................................................................................................................................................................................................TGACA--------GAGTCACTG-----AA---------------------------------------------------------------------------------------------------------------CAACAGGACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
...................................................................................................................................................................................................................TGACCGAGTGACAG----ATTGACAGAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
.......................................................................................................................................................................................................................CGAGTGACAG----ATTGACAGAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACAACAATACAACT----G----------------ACTGAC.......................................................................................................................................................................................................................................................................................24200.051000010
....T--------------------------------------------------------------------------------GACTG-----------------------------------------------------------------------------------------------ACA------------GAGCGACGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000100
droGri2
TAACT--------------------------------------------------------------------------------GACTG-----------------------------------------------------------------------------------------------ACTAACT--------GACTGACTAACTGACTG----ACTA----ACTGACTGACTAACT--------GACTGACTA-----ACTGA----C-------------------------------------------------------------------------------------------------------TGACTAACTGACT---------------------G----ACTAACTGA-----CT--------AACT--------------------GA-------------------CTAACTGACTGAC-T------------------------A----ACTGACTGACTGACT-------------ACCTGACCAAC---------TGACTGACTGACTGGCCAAGTGACTAACTTGA------A--------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ATGGA---------------------------------------------------------------------------------ATTG-----------------------------------------------------------------------------------------------ACTGACTGAAT----GACTAACTGACTGACAG------------ACTAACGGACTGACT--------GACTG--------------------------------------------------------------------------------------------------------------------------------ACTAACT---------------------G---------------------------------ATTGGGTGGGTGGTTGTGCGGGTGA--AGCAATTGT----CTGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------CASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
TGAT------------------------------------------------------------------------------------TG-----------------------------------------------------------------------------------------------ACT------------CAATGACTGACTGACTGAAGGATAT----ATTGACTAACTGATG--------GTTGGA----------------------------------------------------------------------------------CTTCATTCGGTAAATGAATGAAT--GACGGTTGGTTGGTT---GGACTCACTGACTGACGGATTGACG-----G----AT-------TGACT--------------GATTGACTGACT--------GA-------------------CTGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CTGAA-----------------------------------------------------------------------------------TG-----------------------------------------------------------------------------------------------ACTGACTGACT----GACTGACTGACTGACTG------------ACTGACTGACTGACC--------GATTGACTG-----ACTGTTTGAT-------------------------------------------------------------------------------------------------------TCACAGACTCACTGAGT--------GAATGACTG-----A-------------A--------TGAGT--------------------GA-------------------CTGAGTGACT-----------------------------G----ACTTGCTA----ACC-----A---------------------------------------------AA----------------------------------------------------------TAACCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
ATATCT--------------------------------------------------------------------------------ATAG---------------------------------------------------------------ATA------------------TGTATATTG--ATTGACTGATT----GACTGTCTG--------------------ACTGACTGACTGTCT--------GATTGACTG-----AC---------------------------------------------------------------------------------------------------------------TGACTGGCTGACT---------------------GACTGACTGATCGC-----TG--------A------------TCT--------GACTGA--TGACATGA-----------------------------------------------------------------------------------------------------------------------TCT-------------G--------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TGAAT--------------------------------------------------------------------------------GATTG-----------------------------------------------------------------------------------------------ACT------------AATTGAATGATTGACTAACTGAATG----ATTGACTAACTGATT--------GATTGATTG----------------------------------------------------------------------------------------------------------------------------ACTAACTGACT-----------------A----AC-------TGACT--------------GACTGACTGACT--------GA-------------------CTGAC----C-----------------------------G----A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droKik1
ACTA----------------------------------------------------------------------------------ACTG-----------------------------------------------------------------------------------------------ACTGAATGAAT----GACTGACTGACTGGCGAACTGACTG----ACTGAATAACTGACG--------AACTGACGA-------------------------------------------------------------------------------------------A-------------------------CTGACGAACT----------------GACGAACTG-----A-------------C--------TGACTCGCTGGATGACT-------------------------------AAC-----------------------------------------TCACCA----AC----------------------------------------------TGAGTGAGTACTT-----AAAGCAATGGCAAACATTA----------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CCAAT-----------------------------------------------------------------------------------TG-----------------------------------------------------------------------------------------------CCTGATTGACT----CACTGGCTGACTGACTGACTGACTG----ATTGACTAATTGACT--------AAATGACTG---------A----T-------------------------------------------------------------------------------------------------------TGACTAACTGGCT---------------------G----AT-------TGACT--------------TGCTGACTGACT-------------------------------GAC----T-------------------------------------GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGSizeHit CountTotal NormTotal
No Reads
droEle1
ACAGCT---------------------------------------------------------------------------AAGTAATTG-----------------------------------------------------------------------------------------------ACT------------AACTGACTAACTGACTAACTGACTA----ACTGACTAACTGTCT--------AACTGACTA-----AC---------------------------------------------------------------------------------------------------------------TGACTAACTGACT---------------------A----AC-------TGACT--------------AACTGACTATCT--------GA-------------------CTAACTGACTAGTTAGTCACAATGTGCGACTTAGTGACTA----TTTGGCTA----ACT----------------------------------GACTTACTGAATATCTCACTATTA-------------G--------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CTAACT-------------------------------------------------------------------------------GACTG-----------------------------------------------------------------------------------------------ACTGACT--------GATTGACTGACTGACTGACTGACTG----ACTGACTGACTGACT--------GACTGACTG---------A----C-------------------------------------------------------------------------------------------------------TGACTGACTGACT---------------------G----AC-------TGACT--------------GACTGACTGACT--------GA-------------------CTGACTGACTG---------------------------------ACTGACTG----ACT-----GACTCACTGACTCACTGACTGAA-TGACTAACTCGCCAACTGAGTGAGTACTT-----AAAGCAATGGCAAACATTAGCATAAAGCTGGGCTATCA-----------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------TTSizeHit CountTotal NormTotal
No Reads
droBia1
GACTG---------------------------------------------------------------------------------ATGG-----------------------------------------------------------------------------------------------ACTGACT------------GATGGACTGACTGGGTGACAGACTGACTGACTAGCTGACC--------AATTGGCTG-------------------------------------------------------------------------------------------A-------------------------CTGACTG---------------------------------AGAG----G-----CCAACAGACAGACT--------------------GA-------------------CTGGCTGACTGGC---------------------T----GACTGATTGACTG----ACT----------------------------------GACTGACTGATTGATTGACTGACT-------------G--------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CT-----------------TCATCGCGATAGCTTTAAAACTGAGAGACTAGTTCGCATA---GAAACG-----GACAGACTGACAGACTG-----------------------------------------------------------------------------------------------ACA------------GACTGACAGACTGACAGACTGACAG----ACTGACAGACTGACAGACTGACAGACTGAC---------AGA----C-------------------------------------------------------------------------------------------------------TGACA-----------------------------GACTGACAGACTGA-----CA--------GACT--------------------GA-------------------CAGACTGACAGAC-TGACAGACTGACAGACTGACA----GAC----------------TGACAG-----------------AC-----TGACAGACTGACAGACTGACAGACTGACA-------------G--------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
ACTGACAGAC--------------------------------------T------------------------GACAGACTGACAGACTG-----------------------------------------------------------------------------------------------ACA------------GACTGACAGACTGACAGACTGACAG----ACTGACAGACTGACAGACTGACAGACTGAC---------AGA----C-------------------------------------------------------------------------------------------------------TGACA-----------------------------GACTGACAGACTGA-----CA--------GACT--------------------GA-------------------CAGACTGACAGAC-TGACAGACTGACAGACTGACA----GAC----------------TGACAG-----------------AC-----TGACAGACTGACAGACTGACAGACTGACA-------------G---------------------------------ACTAACAGACTGACAGACTGACAGACTGACAGACTGACAGACCTTGTTTAACTTTTTTCTGTTTATATC----------------------------------------------TTTCGAT-----------------------------------------------------TTSizeHit CountTotal NormTotal
No Reads
dm3
ATGTGGAAACCCGCTCCCTTTGCCGCGATGATTTTCCAAATGTCGAACAGGTAAGTTAG---GCAACGAAGTG------------------------TAGGTGCAAACCTATCCCAATGCAATGACTCACTCACATAGTTAGAATATCTAAAAATAGCATGGCCAAATTAAAGCTATACATATAT--GGCCAAAAAGTGTCTAGA--------------------------------------------------------CAGTCTCTATCAAT-A---TTCAACTAATCTGTGAGAAATA------TGT-TGATA-AATGTTGATAAAACATATTACGTTTTATTTTCGATATAAAAAAGTATTATTTTTATTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------TATA----------------------------------------------------------------------------------TATTTATAATAAACCAAACTACTAATGCAACCCATTG------------------TCCAGGGCAAACTACAACTGTGGATAGAGCTGTTCGAGGCGAACATCTATGTGCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAGAGCTGTTCGA..................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................AATGTCGAACAGGTAAGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGTGGATAGAGCTGTTCGAGGCATC............2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GTGGGGGC-----------------------------------------------------------T-------------GACTAACTG-----------------------------------------------------------------------------------------------ACTAACT------------GACAGACTGACTAGCCGACTT----AGCGACTAACTGACC--------AACTGACTA-----ACTGACAAAC-TGGCTT---------------------------------------------------------------------A-------------------------CTGACTA--------AGT--------GACTAACTG-----A-------------C--------TTACT--------------------GA-------------------CTAAGTGACT-----------------------------A----ACTGACTA----ACT-----G----ACTAACTGACAGAC-ACACTAGCTGACTAGCCGACTTAGCGACTAACT-------------G--------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
ATGTGGAAACCCGCTCCCTCTGCCGCGATGATTTTCCAAATGTTGAACAGGTAATAAAA---ACAACGAAGTG--TAGTGT--------------------AGCAAACTTATCCCAATGTAATGACTCACTT--TTAGTTAAAATTTCTACAAATAGCATTGCCAAATTAAAGCTATACATTTAC--GACCAAAAACAGTCTAGA--------------------------------------------------------GAGCCGTTATCAAT-ATTGTTTACCTAATCTGTGACAAATTGCATTATGAGTAATA-ATCATTGATAAAACATATTTCGTTTTATTTTAGATATAAAAAAGTAATATTTTCATTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------TATA------------------------------------------------------------------------------------TTTATAATAAACCAATCTACTAATGCAACCCATTG------------------TCCAGGGCAAACTCCAACTGTGGATAGAGCTGTTCGAGGCGAACATCTATGTGCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ATGTGGAAACCCGCTCCCTTTGCCGAGATGATTTTCCAAATGTCGAACAGGTAATA--GGAAACA------------------------------ATTACGCGCTAACCTATCCCAATGAAATGACTCATTG--ATGGTAAAAATATCCAAAAATA------------------TGTACATCTAT--TGCCATAAAAAATCATG--------------------------------------------------------------------AAA-ATGAATCAGCTTATCTGTGACAAATGGCATTTTAGCTAGCA-ATCATAGATAACA-TTATGTAGTTTAATTTGAGATATAAATTTGT--TTTTTTTGGTTAAGT---AAACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTAATGCAAACCATTG------------------TCCAGGGCAAACTGCAACTGTGGATAGAGCTGTTCGAGGCGAACATCTATGTGCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
ATGTGGAAACCCGCTCCCTTTGCCGAGATGATTTTCCCAATGTCGAGCAGGTAATTTAA---ACACCAAAAGG--C--TTTTATGAGTTAACCAAATTACGCGCTTACCTATCCCAATGAAGTGACTCATTT--GTAGTAAAAATATC--------------------------TGTACATGTAT--TGCCATAAGGAGTCTAGA------------------------------------------------------------------CAAA-ATTAACCACCTAATCAGTGACAAACAGCATTACAAATAGCGCATCATTGATAACA---------------------------------------------G----------------------------------------------------------------------------------------------A--TAG-------------------------------------------------------------------------------------------AT-----TT--------ATATAAAATTAGAGTTTT-----------------------------------------------------------TACATA------------------------------------------------------------------TTGTGCTAATGCCACCCATTG------------------TCCAGGGCAAACTCCAACTGTGGATAGAGCTGTTCGAGGCGAACATCTACGTGCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 08:49 PM