dvi_18667

exon [dvir_GLEANR_12275:1]; CDS [Dvir\GJ12298-cds]; exon [dvir_GLEANR_12275:2]; CDS [Dvir\GJ12298-cds]; intron [Dvir\GJ12298-in]; Antisense to intron [Dvir\GJ13073-in]

--------------------------------------------######-----------------------------------------------------------------------################################################## TTTGAGCGCTACAAATCATAGTCTTTGCCCAAATCCCAAGCAACATGGATGTAAGCAAAGCGCAAAGCTCTTCAAATAGATAATATTCCTAATCATATTCCCAATTTTATTGCCTTTGCAGTTCGATGCAATTTGCGAAAAGTCCAAGGCCTTCAGCAGCAAGCCGCCAAA ************************************************....((((((.((((.........(((((((..........))).))))..........))))))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	SRR060665 9_females_carcasses_total	SRR060679 140x9_testes_total	M061 embryo	M027 male body	SRR060689 160x9_testes_total	SRR060659 Argentina_testes_total	SRR060664 9_males_carcasses_total	SRR060668 160x9_males_carcasses_total	SRR060681 Argx9_testes_total	SRR060684 140x9_0-2h_embryos_total	V116 male body	SRR060669 160x9_females_carcasses_total
.........................................................................................................................TTCGATGCAATTTGCGAAA...............................	19	0	1	3.00	3	0	1	0	0	0	2	0	0	0	0	0	0	0
.............................................................................................................................................GTCCAAGGCCTTCAGCAGC...........	19	0	1	2.00	2	1	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................AATTTGCGAAAAGTCCAAGGC.....................	21	0	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0	0
................................................................................................................................CAATTTGCGAAAAGTCCAAGGCC....................	23	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................GCGAAAAGTCCAAGGCCTTCAGC..............	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
......................CTTTGCCCAAATCCCAAGCA.................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
................CATAGTCTTTGCCCAAATCCCAAGC..................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................ATTTGCGAAAAGTCCAAGGCCTT..................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................GATTTCGATGCAATTTGCGAAAA..............................	23	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................ATTTCGATGCAATTTGCGAAA...............................	21	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TTGCGAAAAGTCCAAGGC.....................	18	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................GTCCAAGGCCTTCAGCAGCAA.........	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................ATTTCGATGCAATTTGCGA.................................	19	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................CAATTTGCGAAAAGTCCAAGGC.....................	22	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................GGATTTCGATGCAATTTGCGAAA...............................	23	2	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0
TTTGAGCGCTACAAATCATA.......................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................TGCGAAAAGTCCAAGGCCTTCAGCAG............	26	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................GCACTTGGCGGAAAGTCCAAGG......................	22	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................CAAATCCCAAGCAACATGGA..........................................................................................................................	20	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................ATTTGCGAAAAGTCCAAGGCCT...................	22	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................AGTCCAAGGCCTTCAGCAGCA..........	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................ATTTCGATGCAATTTGCGAAAA..............................	22	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................GAAAAGTCCAAGGCCTTC.................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................CCTTTGCCCAAATCACAAGCAAC...............................................................................................................................	23	2	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................TTGATGCAATTTGCGAAAAGTCC..........................	23	1	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................CAAGGCCTTCAGCAGCAAGC.......	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
..............................AAATCCCAAGCAACATGGAT.........................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
...................AGTCTTTGCCCAAATCCCAAGC..................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................TGCGAAAAGTCCAAGGCCTTCAGCA.............	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
........CGAGAAATCAAAGTCTTTG................................................................................................................................................	19	3	20	0.25	5	0	0	3	0	0	0	0	0	0	0	0	0	2
..........................................................................................................................TCGATTCAATTTGGGAAA...............................	18	2	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0

AAACTCGCGATGTTTAGTATCAGAAACGGGTTTAGGGTTCGTTGTACCTACATTCGTTTCGCGTTTCGAGAAGTTTATCTATTATAAGGATTAGTATAAGGGTTAAAATAACGGAAACGTCAAGCTACGTTAAACGCTTTTCAGGTTCCGGAAGTCGTCGTTCGGCGGTTT ************************************************....((((((.((((.........(((((((..........))).))))..........))))))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V116 male body	M027 male body	SRR060665 9_females_carcasses_total	SRR060684 140x9_0-2h_embryos_total	SRR060686 Argx9_0-2h_embryos_total	SRR060672 9x160_females_carcasses_total
..........................................................................................................................AGCTACGTTAAACGCTTTTCA............................	21	0	1	1.00	1	1	0	0	0	0	0
................................TAGGGTTCGTTGTACCTA.........................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0
.......................AAACGGGTTTAGGGTTCGTTGTACCTAC........................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................CCGGAAGTCGTCGTTCGGCGG...	21	0	1	1.00	1	0	1	0	0	0	0
............................................................................................................................CTACGCTAACCGCTATTCAG...........................	20	3	7	0.14	1	0	0	0	1	0	0
..........................CAGGTTCAGGGTTCGTTG...............................................................................................................................	18	2	14	0.07	1	0	0	0	0	1	0
.........................................................................................................................................................GTCGTCGCTCGGTGGTTT	18	2	17	0.06	1	0	1	0	0	0	0
.......................................................................................................................................................AAGTGGTCGTTCGTGGGTTT	20	3	20	0.05	1	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_13049:6460216-6460386 -	dvi_18667	TTTGAGCGCTACAAATCATAGTCTTTGCCCAAATCCCAAGCAACATGG---ATGTAAGCAAAG---CGCA-A---------------------------------AGCTCTTCAAATAGAT--A--------------ATA-TTCCTAATCAT--AT--------TCCCAATTTT-AT-------T--GC---CTTTGCAGTTCGATGCAATTTGCGAAAAGTCCAAGGCCTTCAGCAGCAAGCCGCCAAA
droMoj3	scaffold_6680:4774492-4774644 -		TTTGAGCAACACAAATCATAGTCTATCATTAAATCCCGAGCAAAATGG---ATGTAAGTTGTGCAATG---------------------------------------GGCTCCCTATAGGT--A--------------GCATCGGC------TAA-TCTAAGAACTT------TT-A--------T--TG---CCCTGCAGTTCGAGACGATTTGCGAAAAGTCTAAGGCCT-CAGCAG------------
droGri2	scaffold_15110:6296848-6297013 +		TTTGTGGACAACAAATCATAGTCTTTCTATAAATCGCAAGCAAAATGG---ATGTAAGTAAAGCGCACTC-G----------------------------------AAATGGACTACAATATGA------------------TTTA------TTGAT--------TC------GCATTT------ATTGA---CTTTACAGTTCGAGGCAATTTGCGAAAAGTCCAAGGCCTTCAGCACCAAGCCACCAAA
droWil2	scf2_1100000004511:8052089-8052270 +		TTGCTTGGTGGCAAATCATAGTATTCAGTTAAAACCCATAGAAAATGGA---TGTAGGTTTTATTTTATA-A---------------------------------TAATAAAAAATAATAA--TTTTGTTTGTTTTTGCTATTTTC------TAA-TT-------TA------TA-ATT------T--GAAT-TATTATAGTTCGAGACAATCTGTGAAAAGTCCAAGGCCTTTAGCAAGAAGCCACCAAA
dp5	XR_group8:8796029-8796084 +		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGTTCAACGCAATTCTCGAGAAGACCAAGGCCTTCAGCAAGAAGCCCCCAAC
droPer2	scaffold_9:602175-602310 -		AAC--------------------------------------AACATGGTGTCCGTAAGTAAATAAATCAT-AGATAAATATTACAAGATTCGGTTGATCAGTTATGGATC---------------------------------------------------------------TC-GA-------T--GT---TTAAACAGTTCGAAGAAGCCTCTGAACTCGCCAAGAAGTTCACCAAGAAGCCCACCGA
droAna3	scaffold_13337:1648776-1648842 +		CCGAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--CA---TTACACAGTTTGAGGAGATCGTCGAGAAGGCCAAGAGCTTCAAGAACCTGCCCACCAA
droBip1	scf7180000396541:15163-15244 +		CTAAGT---------------------------------------------ATG--------------------------------------------------------------------------------------------------TAA-T--------TA------AT-ATTT-----T--TT---CCCTTCAGTTCAACGCTATCCTGGAGAAGACCAAGGCTTTCAGCAAGAAGCCTCCCAC
droKik1	scf7180000302391:118178-118277 -		AAAATTCTTA------------------------------------------TAAA---------------------------------------------------------ATTTAATA--A------------------TCTC------TAA-T--------TT------CC-CTTT-----T--CT---CCCAACAGTTCGAAGAAGCTACTGAACTCGCCAAGAAGTTCACCAAGAAGCCCACCGA
droFic1	scf7180000452451:98548-98701 +		-----------CAAGTCACATTTGTCAAGCAAAAACCAAGCAACATGGCTGATGTGAGTTGATGATTGCC-G---------------------------------TAATCAGGATAAATCA--A------------------TTTC------TAA-CC-------TC------TC-AAT------A--TG---ATCCGTAGTTCAACGCTATTCTGGAGAAGACCAAGGCCTTCAGCAAGAAGCCCCCGAC
droEle1	scf7180000490564:6576-6740 -		ACTGAGCGGGACAAGACACATTTGTCAGGCATAACTCAAGCAACATGGCCGATGTAAGTTGACGATCGTC-A---------------------------------GGATCTGGATATGGGA--A------------------TCGC------TAA-T--------TC------TG-TTTG-----T--GC---CCCCGCAGTTCAACGCTATCCTGGAGAAGACCAAGGCCTTCAGCCAGAAGCCCCCAAC
droRho1	scf7180000766314:14219-14383 -		ACTGAGAGGGACAAGTCACATTTGTCAAGCATAACTCAAGCAACATGGCCGATGTAAGTTAATGATCGTC-A---------------------------------GGATCTGGATATAGGC--A------------------TCGC------TAA-T--------TC------TT-ATTT-----T--AC---CCCTGCAGTTCAACGCTATTTTGGAGAAGACCAAGGCCTTCAGCCAGAAGCCCCCGAC
droBia1	scf7180000300910:2424858-2425023 +		ACTGGGAGGCACAAGCCACATTTGTCAAGCATACCCCAAGCAACATGGCTGATGTAAGTTGATCCTCGGT-G---------------------------------AGATCTGTATATAGGACAA------------------TCTC------TAA-C--------TT------CC-TCT------G--CC---CTCTGCAGTTCAACGCAATCCTCGAGAAGACCAAGGCCTTCAGCAAGAAGCCCCCCAC
droTak1	scf7180000415356:436214-436388 +		ACTGCGAGGGACAAGTCACATTTGTCGAGCATAACTCAAGCAACATGGCCGATGTAAGTTGATGATCGTTGA---------------------------------GGATCTGGATATAGAACAA---------------TC-TCTC------TAA-C--------AC------TC-TTTCTCTCTG--TG---ATCTGCAGTTCAACGCTATCCTCGAGAAGACCAAGGCCTTCAGCCAGAAGCCCCCCAC
droEug1	scf7180000409466:5279006-5279101 +		AATGAATGATTTCCCA------------------------------------TA-----------------------------------------------------------------TA--A------------------TCTC------TTA-T--------TT------TC-CA-------T--TC---CCCAACAGTTCGAAGAAGCCTCTGAACTCGCCAAGAAGTTCACCAAGAAGCCCACCGA
dm3	chr3L:8781491-8781658 -		ACTGAGAGGGACAAGTCACATTTGTCAAGCATAACTCAAGCAATATGGCCGATGTAAGTTGATGATTGTA-A---------------------------------AGATCGGAACACAGAA--C------------------TCTC------TAA-C--------TC------CCATTT------G--CCATTATTTACAGTTCAACGCTATCCTCGAGAAGACCAAGGCCTTCAGCAAGAAGCCCCCAAC
droSim2	3l:8570789-8570949 -	dsi_15212	---GAGTGGGACAACTCACATTTGTCAAGCATAACTCAAGCAATATGGCCGATGTAAGTTGAGGATCGTA-A---------------------------------AGATCGGGACACAGAA--T------------------TCTC------TAA-C--------CA------CA-TTT------G--CC---ATTCACAGTTCAACGCTATCCTCGAGAAGACCAAGGCCTTCAGCAAGAAGCCCCCAAC
droSec2	scaffold_2:7050683-7050757 +		ACTCCG----------------------------------------------------------------------------------------------------------------------------------------------------A-C--------TT------TC-CT-------T--TG---CTGAACAGTTCGAGGAAGCCACTGAACTCGCCAAGAAGTTCACCAAGAAGCCCACCGA
droYak3	3L:3128097-3128260 +		ACTGACGGAGACAACTCACATTTGTCACGCAAAACTCAAGCAACATGGCCGATGTAAGTTAATGATCGTC-A---------------------------------GGATCGGAATACAAAA--C------------------TCAC------TAA-C--------TC------CC-TTT------G--CG---ATCTGCAGTTTAACGCTATCCTCGAGAAGACCAAGGCCTTCAGCAAGAAGCCCCCAAC
droEre2	scaffold_4784:5258420-5258582 +		ACTGACAGGGACAAGTCACATTTGTCCAGCATAACTCCAGCAATATGGCCGACGTAAGTTAATGATCGCA-A---------------------------------AGATCGGGACCCAGAA--C------------------TCAC------TAA-C--------TC------CC-CT-------G--CG---ATCTGCAGTTCAACGCTATCCTCGAAAAGACCAAGGCCTTCAGCAAGAAGCCCCCAAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TTTGAGCGCTACAAATCATAGTCTTTGCCCAAATCCCAAGCAACATGG---ATGTAAGCAAAG---CGCA-A---------------------------------AGCTCTTCAAATAGAT--A--------------ATA-TTCCTAATCAT--AT--------TCCCAATTTT-AT-------T--GC---CTTTGCAGTTCGATGCAATTTGCGAAAAGTCCAAGGCCTTCAGCAGCAAGCCGCCAAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................TTCGATGCAATTTGCGAAA...............................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GTCCAAGGCCTTCAGCAGC...........	19	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................AATTTGCGAAAAGTCCAAGGC.....................	21	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................CAATTTGCGAAAAGTCCAAGGCC....................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GCGAAAAGTCCAAGGCCTTCAGC..............	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CTTTGCCCAAATCCCAAGCA.................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CATAGTCTTTGCCCAAATCCCAAGC..................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATTTGCGAAAAGTCCAAGGCCTT..................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TTGCGAAAAGTCCAAGGC.....................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GTCCAAGGCCTTCAGCAGCAA.........	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................CAATTTGCGAAAAGTCCAAGGC.....................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TTTGAGCGCTACAAATCATA.......................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TGCGAAAAGTCCAAGGCCTTCAGCAG............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CAAATCCCAAGCAACATGG---A.......................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATTTGCGAAAAGTCCAAGGCCT...................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AGTCCAAGGCCTTCAGCAGCA..........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GAAAAGTCCAAGGCCTTC.................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................CAAGGCCTTCAGCAGCAAGC.......	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AAATCCCAAGCAACATGG---AT......................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................AGTCTTTGCCCAAATCCCAAGC..................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TGCGAAAAGTCCAAGGCCTTCAGCA.............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTTGAGCAACACAAATCATAGTCTATCATTAAATCCCGAGCAAAATGG---ATGTAAGTTGTGCAATG---------------------------------------GGCTCCCTATAGGT--A--------------GCATCGGC------TAA-TCTAAGAACTT------TT-A--------T--TG---CCCTGCAGTTCGAGACGATTTGCGAAAAGTCTAAGGCCT-CAGCAG------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................ATTAAATCCCGAGCAAAATGG---AT......................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
......................CTATCATTAAATCCCGAGCAAAATGG---........................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0
............................................................................................................................................................................................................GAGACGATTTGCGAAAAGT............................	19	1	1.00	1	0	0	0	1	0	0

droGri2

TTTGTGGACAACAAATCATAGTCTTTCTATAAATCGCAAGCAAAATGG---ATGTAAGTAAAGCGCACTC-G----------------------------------AAATGGACTACAATATGA------------------TTTA------TTGAT--------TC------GCATTT------ATTGA---CTTTACAGTTCGAGGCAATTTGCGAAAAGTCCAAGGCCTTCAGCACCAAGCCACCAAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..............................................................................................................................................................................................................................TCCAAGGCCTTCAGCACCA..........	19	2	1.50	3	3	0
.............................................................................................................................................................................................................................GTCCAAGGCCTTCAGCACC...........	19	2	1.50	3	3	0
............................................................................................................................................................................................................................AGTCCAAGGCCTTCAGCACCAAGC.......	24	2	1.00	2	2	0
..............................................................................................................GGACTACAATATGA------------------TTTA------T..................................................................................................	19	1	1.00	1	1	0
........................TTCTATAAATCGCAAGCAA................................................................................................................................................................................................................	19	2	0.50	1	1	0
...............................................................................................................................................................................................................................CCAAGGCCTTCAGCACCAA.........	19	2	0.50	1	1	0
........................TTCTATAAATCGCAAGCAAAATG............................................................................................................................................................................................................	23	2	0.50	1	1	0
.................................................................................................................................................................................................................AATTTGCGAAAAGTCCAAGGCCTTCAG...............	27	2	0.50	1	1	0
..............................................................................................................................................................................................................................TCCAAGGCCTTCAGCACCAA.........	20	2	0.50	1	1	0
........................................................................................................................................................................................................................GAAAAGTCCAAGGCCTTCAGCA.............	22	2	0.50	1	1	0
........................TTCTATAAATCGCAAGCAAAATGG---A.......................................................................................................................................................................................................	25	2	0.50	1	1	0
..................................................................................................................................................................................................................ATTTGCGAAAAGTCCAAGGCC....................	21	2	0.50	1	1	0
......................................................................................................................................................................................................................................CTTCAGCACCAAGCCACCAAA	21	2	0.50	1	1	0
.........................................................................................................................................................................................................................AAAAGTCCAAGGCCTTCAGCACCAAG........	26	2	0.50	1	1	0
............................................................................................................................................................................................................................AGTCCAAGGCCTTCAGCACCA..........	21	2	0.50	1	1	0
...............................................................................................................................................................................................................GCAATTTGCGAAAAGTCCAAGGCC....................	24	2	0.50	1	1	0
.....................................................................................................................................................................................................................TGCGAAAAGTCCAAGGCC....................	18	2	0.50	1	1	0
.................................................................................................................................................................................................................................AAGGCCTTCAGCACCAAGC.......	19	2	0.50	1	1	0
............................................................................................................................................................................................................................AGTCCAAGGCCTTCAGCACCAA.........	22	2	0.50	1	1	0
..............................................................................................................................................................................................................................TCCAAGGCCTTCAGCACCAAGC.......	22	2	0.50	1	1	0
.........................................................................................................................................................................................................................AAAAGTCCAAGGCCTTCAGCAC............	22	2	0.50	1	1	0
....................................................................................................................................................................................................................TTGCGAAAAGTCCAAGGCC....................	19	2	0.50	1	1	0
..............................................................................................................................................................................................................................TCCAAGGCCTTCAGCACCAAGCC......	23	2	0.50	1	1	0
.............................................................................................................................................................................................................................GTCCAAGGCCTTCAGCACCA..........	20	2	0.50	1	1	0
................CATAGTCTTTCTATAAATCGC......................................................................................................................................................................................................................	21	2	0.50	1	1	0
....................................................................................................................................................................................................................TTGCGAAAAGTCCAAGGCCTTC.................	22	2	0.50	1	1	0
............................................................................................................................................................................................................................AGTCCAAGGCCTTCAGCACCAAG........	23	2	0.50	1	1	0
....................GTCTTTCTATAAATCGCAAG...................................................................................................................................................................................................................	20	2	0.50	1	1	0
....................................................................................................................................................................................................................TTGCGAAAAGTCCAAGGC.....................	18	2	0.50	1	1	0
.............................TAAATCGCAAGCAAAATGG---ATA.....................................................................................................................................................................................................	22	2	0.50	1	1	0
.............................................................................................................................................................................................................................GTCCAAGGCCTTCAGCACCAAGC.......	23	2	0.50	1	1	0
.............................TAAATCGCAAGCAAAATGG---........................................................................................................................................................................................................	19	2	0.50	1	1	0

droWil2

TTGCTTGGTGGCAAATCATAGTATTCAGTTAAAACCCATAGAAAATGGA---TGTAGGTTTTATTTTATA-A---------------------------------TAATAAAAAATAATAA--TTTTGTTTGTTTTTGCTATTTTC------TAA-TT-------TA------TA-ATT------T--GAAT-TATTATAGTTCGAGACAATCTGTGAAAAGTCCAAGGCCTTTAGCAAGAAGCCACCAAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................................................................................................GTCCAAGGCCTTTAGCAAGA..........	20	1	8.00	8	0	6	0	2	0
............................................................................................................................................................................................................................AGTCCAAGGCCTTTAGCAAGA..........	21	1	7.00	7	0	4	0	3	0
...........................................................................................................................................................................................................CGAGACAATCTGTGAAAAGTCCAAGGC.....................	27	1	5.00	5	0	0	1	4	0
.........................................................................................................................................................................................................TTCGAGACAATCTGTGAAAA..............................	20	1	4.00	4	0	1	1	2	0
............................................................................................................................................................................................................................AGTCCAAGGCCTTTAGCAAGAA.........	22	1	4.00	4	0	4	0	0	0
...........................................................................................................................................................................................................CGAGACAATCTGTGAAAAGT............................	20	1	3.00	3	0	0	2	1	0
......................................................................................................................................................................................................................................CTTTAGCAAGAAGCCACCAA.	20	1	3.00	3	0	1	1	1	0
..............................................................................................................................................................................................................................TCCAAGGCCTTTAGCAAGA..........	19	1	3.00	3	0	1	0	2	0
................................................................................................................................................................................................................CAATCTGTGAAAAGTCCAAGGC.....................	22	1	3.00	3	0	2	1	0	0
..........................................................................................................................................................................................................TCGAGACAATCTGTGAAAAG.............................	20	1	2.00	2	0	1	1	0	0
.............................................................................................................................................................................................................................GTCCAAGGCCTTTAGCAAGAAGCCACCA..	28	1	2.00	2	0	2	0	0	0
.........................................................................................................................................................................................................TTCGAGACAATCTGTGAAAAGT............................	22	1	2.00	2	0	1	1	0	0
..........................................................................................................................................................................................................TCGAGACAATCTGTGAAAAGT............................	21	1	2.00	2	0	0	2	0	0
.........................................................................................................................................................................................................................AAAAGTCCAAGGCCTTTAGCAAGAA.........	25	1	2.00	2	0	0	0	2	0
.................................................................................................................................................................................................................AATCTGTGAAAAGTCCAAGGCC....................	22	1	1.00	1	0	0	1	0	0
......................ATTCAGTTAAAACCCATAGAAAATGG...........................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................CAATCTGTGAAAAGTCCAAGGCCTTT.................	26	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................TCTGTGAAAAGTCCAAGGCC....................	20	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................CCAAGGCCTTTAGCAAGAAGCCACC...	25	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................AAAGTCCAAGGCCTTTAGC..............	19	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................TTCGAGACAATCTGTGAAAAGTC...........................	23	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................AATCTGTGAAAAGTCCAAGGCCT...................	23	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................CTGTGAAAAGTCCAAGGCCTTTAGCA.............	26	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................CAATCTGTGAAAAGTCCAAGG......................	21	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................GAGACAATCTGTGAAAAGT............................	19	1	1.00	1	0	0	0	1	0
......................................TAGAAAATGGA---TGTAGGTTTT.............................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1
....................................................................................................................................................................................................................CTGTGAAAAGTCCAAGGCCTTTAGCAA............	27	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................AAGTCCAAGGCCTTTAGCAAGAAGC.......	25	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................GAGACAATCTGTGAAAAG.............................	18	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................CTGTGAAAAGTCCAAGGCCTTTAGC..............	25	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................CAAGGCCTTTAGCAAGAAGCCACCAA.	26	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................TTCGAGACAATCTGTGAAA...............................	19	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................GACAATCTGTGAAAAGTCCAAGGC.....................	24	1	1.00	1	0	1	0	0	0
........................TCAGTTAAAACCCATAGAAAATGGA---.......................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
.........................CAGTTAAAACCCATAGAAAATGGA---.......................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................TTATAGTTCGAGACAATCTGTG..................................	22	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................CAATCTGTGAAAAGTCCAA........................	19	1	1.00	1	0	1	0	0	0
...........................GTTAAAACCCATAGAAAATGGA---T......................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
......................ATTCAGTTAAAACCCATAG..................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
.........................CAGTTAAAACCCATAGAAAATG............................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................CAAGGCCTTTAGCAAGAAGC.......	20	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................TCTGTGAAAAGTCCAAGGCCT...................	21	1	1.00	1	0	0	1	0	0
................CATAGTATTCAGTTAAAACC.......................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................CCAAGGCCTTTAGCAAGAAGCC......	22	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................GCCTTTAGCAAGAAGCCACC...	20	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................CAAGGCCTTTAGCAAGAAGCC......	21	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................CAATCTGTGAAAAGTCCAAG.......................	20	1	1.00	1	0	0	1	0	0
......................ATTCAGTTAAAACCCATAGAAAAT.............................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................GTCCAAGGCCTTTAGCAAGAAGCCACC...	27	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................TGAAAAGTCCAAGGCCTTTAGCA.............	23	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................CCAAGGCCTTTAGCAAGAAGC.......	21	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................GACAATCTGTGAAAAGTCCAA........................	21	1	1.00	1	0	1	0	0	0
.........................CAGTTAAAACCCATAGAAAATGGA---T......................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................GTCCAAGGCCTTTAGCAAGAAGCC......	24	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................CCAAGGCCTTTAGCAAGA..........	18	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................ATCTGTGAAAAGTCCAAGGCCTTTAGC..............	27	1	1.00	1	0	0	0	1	0

dp5

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGTTCAACGCAATTCTCGAGAAGACCAAGGCCTTCAGCAAGAAGCCCCCAAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................TTCAACGCAATTCTCGAGAA..............................	20	1	16.00	16	0	16	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CAACGCAATTCTCGAGAAGACCAAGGC.....................	27	1	15.00	15	0	13	1	0	0	0	1	0	0	0
.................................................................................................................................................................................................................AATTCTCGAGAAGACCAAGGC.....................	21	1	12.00	12	0	12	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GACCAAGGCCTTCAGCAAGA..........	20	1	11.00	11	0	11	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GACCAAGGCCTTCAGCAAGAAGC.......	23	1	11.00	11	0	11	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AGACCAAGGCCTTCAGCAAGA..........	21	1	11.00	11	0	11	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GAAGACCAAGGCCTTCAGC..............	19	1	10.00	10	0	10	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATTCTCGAGAAGACCAAGGC.....................	20	1	7.00	7	0	7	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AACGCAATTCTCGAGAAGACCAAGGC.....................	26	1	6.00	6	0	6	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CAACGCAATTCTCGAGAAG.............................	19	1	4.00	4	0	3	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................AATTCTCGAGAAGACCAAGGCCTTCAGC..............	28	1	4.00	4	0	4	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................AATTCTCGAGAAGACCAAGGCC....................	22	1	4.00	4	0	3	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AGACCAAGGCCTTCAGCAAG...........	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TTCAACGCAATTCTCGAGAAGACCAAGGC.....................	29	1	3.00	3	0	3	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TTCTCGAGAAGACCAAGGC.....................	19	1	3.00	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CAACGCAATTCTCGAGAAGACCAAGGCC....................	28	1	3.00	3	0	2	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................GCAATTCTCGAGAAGACCAAGGCCTT..................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CAACGCAATTCTCGAGAAGA............................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AGACCAAGGCCTTCAGCAAGAAGCCCC....	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CAACGCAATTCTCGAGAAGACC..........................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CAACGCAATTCTCGAGAA..............................	18	1	2.00	2	0	1	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................CGCAATTCTCGAGAAGACCAAG.......................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TTCTCGAGAAGACCAAGGCCTTC.................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATTCTCGAGAAGACCAAGGCCTTCAGC..............	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TTCAACGCAATTCTCGAGA...............................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CTCGAGAAGACCAAGGCCTTCA................	22	1	2.00	2	0	1	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................ACCAAGGCCTTCAGCAAGA..........	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GAAGACCAAGGCCTTCAGCAAGAAGCCC.....	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AGACCAAGGCCTTCAGCAAGAAGC.......	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................AATTCTCGAGAAGACCAAGGCCTTC.................	25	1	2.00	2	0	1	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AAGACCAAGGCCTTCAGCAAG...........	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CGCAATTCTCGAGAAGACCAAGGC.....................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................CAATTCTCGAGAAGACCAAGGC.....................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GCAATTCTCGAGAAGACCAAGGC.....................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................CAAGGCCTTCAGCAAGAAGC.......	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GACCAAGGCCTTCAGCAAGAA.........	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AAGACCAAGGCCTTCAGCAAGA..........	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GAAGACCAAGGCCTTCAGCAAGAAGC.......	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................AGAAGACCAAGGCCTTCAGCAAG...........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................ACCAAGGCCTTCAGCAAGAAGCCCC....	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TCTCGAGAAGACCAAGGCCTTCAGCAA............	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TTCAACGCAATTCTCGAGAAG.............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATTCTCGAGAAGACCAAGGCCT...................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GCAATTCTCGAGAAGACCAAGGCCT...................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATTCTCGAGAAGACCAAGGCCTT..................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GACCAAGGCCTTCAGCAAGAAGCCC.....	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................AATTCTCGAGAAGACCAAGGCCT...................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AGACCAAGGCCTTCAGCAAGAAGCCC.....	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AACGCAATTCTCGAGAAGACCA.........................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CGCAATTCTCGAGAAGACCAAGGCCTTCA................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GACCAAGGCCTTCAGCAAGAAGCCCC....	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................AGAAGACCAAGGCCTTCAGC..............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TTCTCGAGAAGACCAAGGCC....................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................CCAAGGCCTTCAGCAAGAAGCCCC....	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................CTTCAGCAAGAAGCCCCCAAC	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GCAATTCTCGAGAAGACCAAGGCCTTC.................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................CAATTCTCGAGAAGACCAAGG......................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CAACGCAATTCTCGAGAAGACCAAG.......................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................AAGACCAAGGCCTTCAGC..............	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TTCTCGAGAAGACCAAGGCCTTCAGC..............	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CGAGAAGACCAAGGCCTTC.................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TTCAACGCAATTCTCGAGAAGA............................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CGAGAAGACCAAGGCCTTCAGC..............	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GACCAAGGCCTTCAGCAAGAAG........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CTCGAGAAGACCAAGGCCTT..................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TCTCGAGAAGACCAAGGCCTTCAGC..............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GACCAAGGCCTTCAGCAAGAAGCCCCC...	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TTCTCGAGAAGACCAAGGCCTTCA................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATTCTCGAGAAGACCAAGGCCTTC.................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CAACGCAATTCTCGAGAAGAC...........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GAGAAGACCAAGGCCTTCA................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CGAGAAGACCAAGGCCTT..................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AGACCAAGGCCTTCAGCAAGAA.........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATTCTCGAGAAGACCAAGGCCTTCAGCA.............	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATTCTCGAGAAGACCAAGGCC....................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AAC--------------------------------------AACATGGTGTCCGTAAGTAAATAAATCAT-AGATAAATATTACAAGATTCGGTTGATCAGTTATGGATC---------------------------------------------------------------TC-GA-------T--GT---TTAAACAGTTCGAAGAAGCCTCTGAACTCGCCAAGAAGTTCACCAAGAAGCCCACCGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................................................................................CGAAGAAGCCTCTGAACT..............................	18	1	34.00	34	34	0	0	0	0	0
...............................................................................................................................................................................................................GAAGCCTCTGAACTCGCCAAGAAGTT..................	26	1	11.00	11	11	0	0	0	0	0
..............................................................................................................................................................................................................AGAAGCCTCTGAACTCGCCAAGAAGTT..................	27	1	10.00	10	10	0	0	0	0	0
.........................................................................................................................................................................................................TTCGAAGAAGCCTCTGAACT..............................	20	1	9.00	9	9	0	0	0	0	0
...........................................................................................................................................................................................................CGAAGAAGCCTCTGAACTCGCCAAGAAGT...................	29	1	7.00	7	7	0	0	0	0	0
......................................................................................................................................................................................................................CTGAACTCGCCAAGAAGTT..................	19	1	7.00	7	6	1	0	0	0	0
...............................................................................................................................................................................................................GAAGCCTCTGAACTCGCCAAGAA.....................	23	1	6.00	6	6	0	0	0	0	0
..............................................................................................................................................................................................................AGAAGCCTCTGAACTCGCC..........................	19	1	6.00	6	6	0	0	0	0	0
...............................................................................................................................................................................................................GAAGCCTCTGAACTCGCC..........................	18	1	6.00	6	6	0	0	0	0	0
...............................................................................................................................................................................................................GAAGCCTCTGAACTCGCCAAGAAGT...................	25	1	5.00	5	5	0	0	0	0	0
....................................................................................................................................................................................................................CTCTGAACTCGCCAAGAAGTT..................	21	1	5.00	5	5	0	0	0	0	0
......................................................................................................................................................................................................................CTGAACTCGCCAAGAAGT...................	18	1	5.00	5	5	0	0	0	0	0
...........................................................................................................................................................................................................CGAAGAAGCCTCTGAACTCGCCAAGAA.....................	27	1	5.00	5	4	1	0	0	0	0
...........................................................................................................................................................................................................CGAAGAAGCCTCTGAACTCGCCAA........................	24	1	5.00	5	5	0	0	0	0	0
....................................................................................................................................................................................................................CTCTGAACTCGCCAAGAA.....................	18	1	4.00	4	4	0	0	0	0	0
..............................................................................................................................................................................................................AGAAGCCTCTGAACTCGC...........................	18	1	4.00	4	4	0	0	0	0	0
.........................................................................................................................................................................................................TTCGAAGAAGCCTCTGAAC...............................	19	1	4.00	4	4	0	0	0	0	0
..............................................................................................................................................................................................................AGAAGCCTCTGAACTCGCCAAGA......................	23	1	3.00	3	3	0	0	0	0	0
..............................................................................................................................................................................................................AGAAGCCTCTGAACTCGCCAAGAA.....................	24	1	3.00	3	2	1	0	0	0	0
..........................................................................................................................................................................................................TCGAAGAAGCCTCTGAACTCGCCAAGAA.....................	28	1	3.00	3	3	0	0	0	0	0
.........................................................................................................................................................................................................TTCGAAGAAGCCTCTGAA................................	18	1	3.00	3	3	0	0	0	0	0
.........................................................................................................................................................................................................TTCGAAGAAGCCTCTGAACTCGCCA.........................	25	1	3.00	3	3	0	0	0	0	0
.........................................................................................................................................................................................................TTCGAAGAAGCCTCTGAACTCGCCAAGA......................	28	1	3.00	3	3	0	0	0	0	0
...........................................................................................................................................................................................................CGAAGAAGCCTCTGAACTCGCCAAG.......................	25	1	3.00	3	3	0	0	0	0	0
..............................................................................................................................................................................................................AGAAGCCTCTGAACTCGCCAAGAAGT...................	26	1	3.00	3	3	0	0	0	0	0
............................................................................................................................................................................................................GAAGAAGCCTCTGAACTCGCCAAGAAGTT..................	29	1	2.00	2	2	0	0	0	0	0
................................................................................................................................................................................................................AAGCCTCTGAACTCGCCA.........................	18	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................TCTGAACTCGCCAAGAAGTT..................	20	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................TCTGAACTCGCCAAGAAGT...................	19	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................CTCTGAACTCGCCAAGAAGT...................	20	1	2.00	2	0	0	0	0	0	2
.............................................................................................................................................................................................................AAGAAGCCTCTGAACTCGCC..........................	20	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................................CCTCTGAACTCGCCAAGAAGT...................	21	1	2.00	2	1	0	0	0	0	1
....................................................................................................................................................................................................................CTCTGAACTCGCCAAGAAGTTC.................	22	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................................CGAAGAAGCCTCTGAACTCGCC..........................	22	1	2.00	2	1	1	0	0	0	0
.........................................................................................................................................................................................................TTCGAAGAAGCCTCTGAACTCGCC..........................	24	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................................CGAAGAAGCCTCTGAACTCG............................	20	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................................................................CGCCAAGAAGTTCACCAA............	18	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................................AGAAGCCTCTGAACTCGCCAAGG......................	23	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................AGAAGCCTCTGAACTCGCCAAGAAG....................	25	1	1.00	1	0	0	1	0	0	0
...........................................................................................................................................................................................................CGAAGAAGCCTCTGAACC..............................	18	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................AGCCTCTGAACTCGCCAAGAAGTTCACC..............	28	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................TCGAAGAAGCCTCTGAACTCGCCAAG.......................	26	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................AAGAAGCCTCTGAACTCG............................	18	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................AAGAAGCCTCTGAACTCGCCAAGAAGTT..................	28	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................CGAAGAAGCCTCTGAACTCGCCAAGAAGG...................	29	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................GAAGCCTCTGAACTCGCCAAG.......................	21	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................TCGAAGAAGCCTCTGAACT..............................	19	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................CGCCAAGAAGTTCACCAAG...........	19	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................AAGCCTCTGAACTCGCCAAGAAGTT..................	25	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................CCTCTGAACTCGCCAAGA......................	18	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................AGAAGCCTCTGAACTCGCCAA........................	21	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................................................................TTCGAAGAAGCCTCTGAACTCGCCAAGAA.....................	29	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................GAAGCCTCTGAACTCGCCAAGAAGTTC.................	27	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................CGCCAAGAAGTTCACCAAGA..........	20	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................GAAGCCTCTGAACTCGCCAAGA......................	22	1	1.00	1	1	0	0	0	0	0

droAna3

CCGAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--CA---TTACACAGTTTGAGGAGATCGTCGAGAAGGCCAAGAGCTTCAAGAACCTGCCCACCAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................................................................................................................................................GTCGAGAAGGCCAAGAGCTTCAAGA.............	25	1	3.00	3	1	1	0	0	1	0
............................................................................................................................................................................................................................AGGCCAAGAGCTTCAAGAACCTGC.......	24	1	2.00	2	0	1	1	0	0	0
.....................................................................................................................................................................................................................................GCTTCAAGAACCTGCCCACC..	20	1	2.00	2	0	2	0	0	0	0
........................................................................................................................................................................................................................GAGAAGGCCAAGAGCTTCAAGAACC..........	25	1	2.00	2	2	0	0	0	0	0
........................................................................................................................................................................................................................GAGAAGGCCAAGAGCTTCAAG..............	21	1	2.00	2	1	0	0	0	1	0
...........................................................................................................................................................................................................TGAGGAGATCGTCGAGAAGGC...........................	21	1	2.00	2	1	1	0	0	0	0
..........................................................................................................................................................................................................TTGAGGAGATCGTCGAGAAGGC...........................	22	1	2.00	2	0	0	0	0	2	0
...................................................................................................................................................................................................................TCGTCGAGAAGGCCAAGAGCTTCAAGA.............	27	1	2.00	2	1	0	0	0	1	0
.............................................................................................................................................................................................................................GGCCAAGAGCTTCAAGAACCTGCC......	24	1	2.00	2	1	1	0	0	0	0
....................................................................................................................................................................................................................CGTCGAGAAGGCCAAGAGCTTCAAGA.............	26	1	2.00	2	1	0	0	0	1	0
.....................................................................................................................................................................................................................GTCGAGAAGGCCAAGAGCTT..................	20	1	2.00	2	0	1	0	0	1	0
..........................................................................................................................................................................................................................GAAGGCCAAGAGCTTCAAGAACC..........	23	1	2.00	2	0	1	0	0	1	0
....................................................................................................................................................................................................................CGTCGAGAAGGCCAAGAGCTTC.................	22	1	2.00	2	0	2	0	0	0	0
................................................................................................................................................................................................................................CAAGAGCTTCAAGAACCTGCC......	21	1	2.00	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................GTCGAGAAGGCCAAGAGCTTCA................	22	1	2.00	2	2	0	0	0	0	0
....AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--CA---TTACACAGTTTGAGGA..........................................	21	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................CTTCAAGAACCTGCCCACCAA	21	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................CAAGAGCTTCAAGAACCTGCCCA....	23	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................GCCAAGAGCTTCAAGAACCTGCCCACC..	27	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................AAGAGCTTCAAGAACCTGCCCACCA.	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................AAGAGCTTCAAGAACCTGCC......	20	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................AGATCGTCGAGAAGGCCAAGAGCTT..................	25	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................GATCGTCGAGAAGGCCAAG.......................	19	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................CGTCGAGAAGGCCAAGAGCT...................	20	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................AGGCCAAGAGCTTCAAGAACCT.........	22	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................TGAGGAGATCGTCGAGAAGGCCAAGAG.....................	27	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................GCCAAGAGCTTCAAGAACCTGCCCACCAA	29	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................TTGAGGAGATCGTCGAGAAGG............................	21	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................GGCCAAGAGCTTCAAGAACC..........	20	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................ATCGTCGAGAAGGCCAAGAGCTTCA................	25	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................AGGAGATCGTCGAGAAGGCCAAGAG.....................	25	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................GTCGAGAAGGCCAAGAGCT...................	19	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................ACAGTTTGAGGAGATCGTCGAGAA..............................	24	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................................................................................CAAGAGCTTCAAGAACCTGCCC.....	22	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................CTTCAAGAACCTGCCCACC..	19	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................TGAGGAGATCGTCGAGAAGGCCAAGA......................	26	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................................CAAGAGCTTCAAGAACCTGCCCAC...	24	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................CAAGAGCTTCAAGAACCT.........	18	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................................CGTCGAGAAGGCCAAGAGCTTCAAG..............	25	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................GGCCAAGAGCTTCAAGAACCTGCCC.....	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................GATCGTCGAGAAGGCCAAGAGCTTCAAG..............	28	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................ACACAGTTTGAGGAGATCGTCGA.................................	23	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................GAGGAGATCGTCGAGAAGGCCAAGAGC....................	27	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................TGAGGAGATCGTCGAGAAGGCCAAGAGC....................	28	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................GATCGTCGAGAAGGCCAA........................	18	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................ATCGTCGAGAAGGCCAAG.......................	18	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................GAAGGCCAAGAGCTTCAAGA.............	20	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................GGCCAAGAGCTTCAAGAACCTGCCCAC...	27	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................CCAAGAGCTTCAAGAACCTGCCCAC...	25	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................GAGATCGTCGAGAAGGCCAAGA......................	22	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................................TCGTCGAGAAGGCCAAGAGCTT..................	22	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................GCCAAGAGCTTCAAGAACCTGCCCAC...	26	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................GGCCAAGAGCTTCAAGAACCTGCCCACC..	28	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................AAGAGCTTCAAGAACCTGCCC.....	21	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................GATCGTCGAGAAGGCCAAGAG.....................	21	1	1.00	1	0	0	1	0	0	0
.................................................................................................................................................................................................................GATCGTCGAGAAGGCCAAGA......................	20	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................AGGCCAAGAGCTTCAAGAAC...........	20	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................GAGATCGTCGAGAAGGCCAAGAGCT...................	25	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................AGCTTCAAGAACCTGCCC.....	18	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................GCTTCAAGAACCTGCCCACCAA	22	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................GAGAAGGCCAAGAGCTTCAAGA.............	22	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................GATCGTCGAGAAGGCCAAGAGC....................	22	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................GAGGAGATCGTCGAGAAGGCCAAGA......................	25	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................GGAGATCGTCGAGAAGGCCAAGAGCTT..................	27	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................ATCGTCGAGAAGGCCAAGAGCTTC.................	24	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................GATCGTCGAGAAGGCCAAGAGCTT..................	24	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................GTCGAGAAGGCCAAGAGC....................	18	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................GAAGGCCAAGAGCTTCAAGAACCTGCCC.....	28	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................GAAGGCCAAGAGCTTCAAGAACCTGCC......	27	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................AGGCCAAGAGCTTCAAGAACCTGCCCAC...	28	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................GTCGAGAAGGCCAAGAGCTTC.................	21	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................GTCGAGAAGGCCAAGAGCC...................	19	2	0.50	1	0	1	0	0	0	0

droBip1

CTAAGT---------------------------------------------ATG--------------------------------------------------------------------------------------------------TAA-T--------TA------AT-ATTT-----T--TT---CCCTTCAGTTCAACGCTATCCTGGAGAAGACCAAGGCTTTCAGCAAGAAGCCTCCCAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAAATTCTTA------------------------------------------TAAA---------------------------------------------------------ATTTAATA--A------------------TCTC------TAA-T--------TT------CC-CTTT-----T--CT---CCCAACAGTTCGAAGAAGCTACTGAACTCGCCAAGAAGTTCACCAAGAAGCCCACCGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

-----------CAAGTCACATTTGTCAAGCAAAAACCAAGCAACATGGCTGATGTGAGTTGATGATTGCC-G---------------------------------TAATCAGGATAAATCA--A------------------TTTC------TAA-CC-------TC------TC-AAT------A--TG---ATCCGTAGTTCAACGCTATTCTGGAGAAGACCAAGGCCTTCAGCAAGAAGCCCCCGAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACTGAGCGGGACAAGACACATTTGTCAGGCATAACTCAAGCAACATGGCCGATGTAAGTTGACGATCGTC-A---------------------------------GGATCTGGATATGGGA--A------------------TCGC------TAA-T--------TC------TG-TTTG-----T--GC---CCCCGCAGTTCAACGCTATCCTGGAGAAGACCAAGGCCTTCAGCCAGAAGCCCCCAAC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACTGAGAGGGACAAGTCACATTTGTCAAGCATAACTCAAGCAACATGGCCGATGTAAGTTAATGATCGTC-A---------------------------------GGATCTGGATATAGGC--A------------------TCGC------TAA-T--------TC------TT-ATTT-----T--AC---CCCTGCAGTTCAACGCTATTTTGGAGAAGACCAAGGCCTTCAGCCAGAAGCCCCCGAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACTGGGAGGCACAAGCCACATTTGTCAAGCATACCCCAAGCAACATGGCTGATGTAAGTTGATCCTCGGT-G---------------------------------AGATCTGTATATAGGACAA------------------TCTC------TAA-C--------TT------CC-TCT------G--CC---CTCTGCAGTTCAACGCAATCCTCGAGAAGACCAAGGCCTTCAGCAAGAAGCCCCCCAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACTGCGAGGGACAAGTCACATTTGTCGAGCATAACTCAAGCAACATGGCCGATGTAAGTTGATGATCGTTGA---------------------------------GGATCTGGATATAGAACAA---------------TC-TCTC------TAA-C--------AC------TC-TTTCTCTCTG--TG---ATCTGCAGTTCAACGCTATCCTCGAGAAGACCAAGGCCTTCAGCCAGAAGCCCCCCAC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AATGAATGATTTCCCA------------------------------------TA-----------------------------------------------------------------TA--A------------------TCTC------TTA-T--------TT------TC-CA-------T--TC---CCCAACAGTTCGAAGAAGCCTCTGAACTCGCCAAGAAGTTCACCAAGAAGCCCACCGA	Size	Hit Count	Total Norm	Total
No Reads

dm3

ACTGAGAGGGACAAGTCACATTTGTCAAGCATAACTCAAGCAATATGGCCGATGTAAGTTGATGATTGTA-A---------------------------------AGATCGGAACACAGAA--C------------------TCTC------TAA-C--------TC------CCATTT------G--CCATTATTTACAGTTCAACGCTATCCTCGAGAAGACCAAGGCCTTCAGCAAGAAGCCCCCAAC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................CGCTATCCTCGAGAAGACCAAGGC.....................	24	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TATCCTCGAGAAGACCAAGGCCTTC.................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................ACGCTATCCTCGAGAAGACCAAGGC.....................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CAACGCTATCCTCGAGAAGACCAAGGC.....................	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GCTATCCTCGAGAAGACCAAGGC.....................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CCTCGAGAAGACCAAGGCT....................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AACGCTATCCTCGAGAAGACCAAGGC.....................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
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...................................................................................................................................................................................................................TCCTCGAGAAGACCAAGG......................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATCCTCGAGAAGACCAAGGCCT...................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TATCCTCGAGAAGACCAAGGCCTTCAGC..............	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TCAACGCTATCCTCGAGAAGA............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CTCAAGCAATATGGCCGAATC....................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................AGTTGATGATTGTA-A---------------------------------AGAATC............................................................................................................................................	21	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................TGTA-A---------------------------------AGATCGGAATC.......................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ACTCAAGCAATATGGCATC.......................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

---GAGTGGGACAACTCACATTTGTCAAGCATAACTCAAGCAATATGGCCGATGTAAGTTGAGGATCGTA-A---------------------------------AGATCGGGACACAGAA--T------------------TCTC------TAA-C--------CA------CA-TTT------G--CC---ATTCACAGTTCAACGCTATCCTCGAGAAGACCAAGGCCTTCAGCAAGAAGCCCCCAAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................GTCAAGCATAACTCAAGCAATATGGCC.........................................................................................................................................................................................................	27	1	10.00	10	0	6	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................AAGCATAACTCAAGCAATATGGCC.........................................................................................................................................................................................................	24	1	3.00	3	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TTCAACGCTATCCTCGAGA...............................	19	1	3.00	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................ATAACTCAAGCAATATGGCC.........................................................................................................................................................................................................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AGCATAACTCAAGCAATATGGCC.........................................................................................................................................................................................................	23	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AAGACCAAGGCCTTCAGCAAGAAGCCC.....	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................AGCATAACTCAAGCAATATGGCCGAT......................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATCCTCGAGAAGACCAAGGC.....................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................ACCAAGGCCTTCAGCAAGA..........	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GACCAAGGCCTTCAGCAAGAA.........	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CAACGCTATCCTCGAGAAG.............................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GTCAAGCATAACTCAAGCAATATGGC..........................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TATGGCCGATGTAAGTTGAG............................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AGCATAACTCAAGCAATATGGCCGA.......................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TATCCTCGAGAAGACCAAGGCCTTCAGCAAGA..........	32	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................CGGGACACAGAA--T------------------TCTC------TAA-...............................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................CTATCCTCGAGAAGACCAAGGC.....................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................CGCTATCCTCGAGAAGACCAAGGCCTT..................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GACCAAGGCCTTCAGCAAGA..........	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................ACGCTATCCTCGAGAAGACCAAGGCC....................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TGTCAAGCATAACTCAAGC..................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATCCTCGAGAAGACCAAGGCCTTCAGC..............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................TATCCTCGAGAAGACCAAGGCCT...................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................CATTTGTCAAGCATAACTCAAGCAAT...............................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................GCCGATGTAAGTTGAGGA..........................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................TTTGTCAAGCATAACTCAAGCA.................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CAACGCTATCCTCGAGAAGACCAAG.......................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TTGTCAAGCATAACTCAAGCAATATGGC..........................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................CGGGACACAGAA--T------------------TCTC------T..................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TTGTCAAGCATAACTCAAGC..................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AACGCTATCCTCGAGAAGA............................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................AAGCATAACTCAAGCAATATGGC..........................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CTCGAGAAGACCAAGGCCTTCAGCA.............	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................ATAACTCAAGCAATATGGC..........................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TTCAACGCTATCCTCGAGAAG.............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................CAAGCATAACTCAAGCAATATGGCCGATT.....................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................CTC------TAA-C--------CA------CA-TTT------G--CC---ATTC......................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CTCGAGAAGACCAAGGCCT...................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................AAGCATAACTCAAGCAATATGG...........................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ATTTGTCAAGCATAACTCAAGC..................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TTGTCAAGCATAACTCAAGCA.................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ACTCCG----------------------------------------------------------------------------------------------------------------------------------------------------A-C--------TT------TC-CT-------T--TG---CTGAACAGTTCGAGGAAGCCACTGAACTCGCCAAGAAGTTCACCAAGAAGCCCACCGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................................................................................................GTTCGAGGAAGCCACTGAAC...............................	20	1	2.00	2	0	1	1	0
................................................................................................................................................................................................................AAGCCACTGAACTCGCCAAGAAG....................	23	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................................TCGAGGAAGCCACTGAACT..............................	19	1	1.00	1	1	0	0	0
......................................................................................................................................................................................................................................GTTCACCAAGAAGCCCACCGA	21	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................GTTCGAGGAAGCCACTGA.................................	18	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................................TCGAGGAAGCCACTGAAC...............................	18	1	1.00	1	0	0	0	1
..............................................................................................................................................................................................................GGAAGCCACTGAACTCGCCAAGA......................	23	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................CGAGGAAGCCACTGAACTCGC...........................	21	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................GTTCGAGGAAGCCACTGAACT..............................	21	1	1.00	1	0	1	0	0
.............................................................................................................................................................................................................................CGCCAAGAAGTTCACCAAGAAGCCCACC..	28	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................AGTTCGAGGAAGCCACTGA.................................	19	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................AAGTTCACCAAGAAGCCCACC..	21	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................TCGCCAAGAAGTTCACCAAG...........	20	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................CTCGCCAAGAAGTTCACCAAG...........	21	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................TTCGAGGAAGCCACTGAAC...............................	19	1	1.00	1	0	0	1	0

droYak3

ACTGACGGAGACAACTCACATTTGTCACGCAAAACTCAAGCAACATGGCCGATGTAAGTTAATGATCGTC-A---------------------------------GGATCGGAATACAAAA--C------------------TCAC------TAA-C--------TC------CC-TTT------G--CG---ATCTGCAGTTTAACGCTATCCTCGAGAAGACCAAGGCCTTCAGCAAGAAGCCCCCAAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................GTCACGCAAAACTCAAGCAACATGGCC.........................................................................................................................................................................................................	27	1	4.00	4	1	0	3	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATCCTCGAGAAGACCAAGGC.....................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
................................AACTCAAGCAACATGGCCGAT......................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
......................TGTCACGCAAAACTCAAGCAACAT.............................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
............................GCAAAACTCAAGCAACATGGCC.........................................................................................................................................................................................................	22	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
..............................AAAACTCAAGCAACATGGCC.........................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................ACGCTATCCTCGAGAAGACCAAGGC.....................	25	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
..........................ACGCAAAACTCAAGCAACATGGCC.........................................................................................................................................................................................................	24	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TATCCTCGAGAAGACCAAGGCCTTC.................	25	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...............................AAACTCAAGCAACATGGCC.........................................................................................................................................................................................................	19	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
...................................TCAAGCAACATGGCCGATT.....................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AAGACCAAGGCCTTCAGCAAGAAGC.......	25	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GACCAAGGCCTTCAGCAAGA..........	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.........................CACGCAAAACTCAAGCAACAT.............................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.........................CACGCAAAACTCAAGCAACATGGCC.........................................................................................................................................................................................................	25	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AGACCAAGGCCTTCAGCAAGA..........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................AACATGGCCGATGTAAGTTAATGA..........................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................GAGAAGACCAAGGCCTTCAGC..............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................CCAAGGCCTTCAGCAAGAAGC.......	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................AAACTCAAGCAACATGGCCGAT......................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TATCCTCGAGAAGACCAAGGCCTTCAGC..............	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................AACGCTATCCTCGAGAAGACCAA........................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TTAACGCTATCCTCGAGAA..............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AACGCTATCCTCGAGAAGA............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CTCGAGAAGACCAAGGCCTTCAGC..............	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................GAGAAGACCAAGGCCTTCAGCAAGAA.........	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GACCAAGGCCTTCAGCAAGAAGCC......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................CAAAACTCAAGCAACATGGCCGAT......................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................CTTCAGCAAGAAGCCCCCAAC	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............AACTCACATTTGTCACGCAAAACT.......................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TCGAGAAGACCAAGGCCTTCAGC..............	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TTTAACGCTATCCTCGAGAAGACC..........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................CACGCAAAACTCAAGCAACATGGCCGA.......................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................AAAACTCAAGCAACATGGCCGA.......................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TAACGCTATCCTCGAGAAG.............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CGCTATCCTCGAGAAGACCAAGGC.....................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................TTTGTCACGCAAAACTCAAGC..................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CGCTATCCTCGAGAAGACCAAGGCCTTC.................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................CGCAAAACTCAAGCAACATGGCCG........................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................CCAAGGCCTTCAGCAAGAAGCCC.....	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CCTCGAGAAGACCAAGGC.....................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................GCTATCCTCGAGAAGACCAAGGCCTT..................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TTTAACGCTATCCTCGAGA...............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................AAAACTCAAGCAACATGGCCGAT......................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................CACGCAAAACTCAAGCAACATGGCCGAT......................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CCTCGAGAAGACCAAGGCCT...................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................TTAACGCTATCCTCGAGAAGACCAAG.......................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TTTAACGCTATCCTCGAGAAGACCAAGGC.....................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................TCACGCAAAACTCAAGCAACATGGCC.........................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GCTATCCTCGAGAAGACCAAGGC.....................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................GCTATCCTCGAGAAGACCAA........................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................GACCAAGGCCTTCAGCAAGAG.........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CCTCGAGAAGACCAAGGCCTTCAG...............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................CTATCCTCGAGAAGACCAAGGCCT...................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................CCAAGGCCTTCAGCAAGAAGCCCC....	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TTAACGCTATCCTCGAGAAGACCAAGGC.....................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................GCAAAACTCAAGCAACATGGC..........................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GAGAAGACCAAGGCCTTCAGCAAGAAGC.......	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................TTTAACGCTATCCTCGAGAAG.............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................CTATCCTCGAGAAGACCAAGGCCTTC.................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CGAGAAGACCAAGGCCTTCAGC..............	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TTTAACGCTATCCTCGAGAA..............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................CAAAACTCAAGCAACATGGC..........................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................GTCACGCAAAACTCAAGCAACATGGC..........................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

ACTGACAGGGACAAGTCACATTTGTCCAGCATAACTCCAGCAATATGGCCGACGTAAGTTAATGATCGCA-A---------------------------------AGATCGGGACCCAGAA--C------------------TCAC------TAA-C--------TC------CC-CT-------G--CG---ATCTGCAGTTCAACGCTATCCTCGAAAAGACCAAGGCCTTCAGCAAGAAGCCCCCAAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................................GCTATCCTCGAAAAGACCAAGGC.....................	23	1	2.00	2	1	0	0	0	1	0	0
..........................................................................................................................................................................................................TCAACGCTATCCTCGAAAAGACCAAGGC.....................	28	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................CAACGCTATCCTCGAAAAGACCAAGGC.....................	27	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................GAAAAGACCAAGGCCTTCAGCAAGA..........	25	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................TATCCTCGAAAAGACCAAGGCCTTC.................	25	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................AAAGACCAAGGCCTTCAGC..............	19	1	1.00	1	0	1	0	0	0	0	0
.......................GTCCAGCATAACTCCAGC..................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................CTATCCTCGAAAAGACCAAGGCCTTC.................	26	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................CGAAAAGACCAAGGCCTTCAGCAAGA..........	26	1	1.00	1	0	1	0	0	0	0	0
.............................CATAACTCCAGCAATATGGC..........................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................GACCAAGGCCTTCAGCAAGAAGCCC.....	25	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................GCTATCCTCGAAAAGACCAA........................	20	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................CTCGAAAAGACCAAGGCCTTCAG...............	23	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................AGACCAAGGCCTTCAGCAAGAAGC.......	24	1	1.00	1	0	1	0	0	0	0	0
......................TGTCCAGCATAACTCCAGC..................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................AACGCTATCCTCGAAAAGACCA.........................	22	1	1.00	1	0	0	0	0	0	1	0
.................ACATTTGTCCAGCATAACTCCAGC..................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0

dvi_18667

scaffold_13049:6460266-6460336 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads