ID:

dvi_18655

 Coordinate:

scaffold_13049:6401006-6401156 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.1 -15.8 -15.8

Flybase annnotation

exon [dvir_GLEANR_12279:2]; CDS [Dvir\Prm-cds]; intron [Dvir\Prm-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTATATATACATATGCGTCGGTGAAAATTATGTAACAAGCACCTCCGAGATACACATTGAAAAAATGCGATAAATAAAAATACATATACGTATATTTGAATTTTGTGCAAAAAGTAAAACAGAAACTCGAAAACTTGTGCGAAAATTAAAATGAAAACCTCAATTTCAACATGAATACAAATATGATATATTTTCTTGCAGGATAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGCTGCG
**************************************************...............(((((.(((((...((.(((((..((((.(((((.((((((((((........................)))))))))).))))).(((((.......)))))......))))..))))))).)))))..))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 V053
head
 SRR060664
9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR060660
Argentina_ovaries_total
 M047
female body
 SRR060658
140_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060688
160_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
 V116
male body		 SRR060669
160x9_females_carcasses_total
 M027
male body		 SRR060678
9x140_testes_total
 SRR060671
9x160_males_carcasses_total
 SRR060656
9x160_ovaries_total
..............................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAGCTGC. 28 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATAAGATCCGTTTGCTCCAA............................. 20 0 1 2.00 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAGC.... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AGATGATCTTGAAGTTGAACGTGA...... 24 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GATAAGATCCGTTTGCTCCAA............................. 21 0 1 2.00 2 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAGCT... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GATGATCTTGAAGTTGAAC.......... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATAAGATCCGTTTGCTCCAAGATG......................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GCTCCAAGATGATCTTGAA................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GGATAAGATCCGTTTGCTCCAAG............................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CGCTTGGAGGATAAGATCCGTTTGCTCC............................... 28 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................ATTAAAATGAAAACCTCAA........................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGAAGTTGAACGTGAGCT... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TAAGATCCGTTTGCTCCAAGATG......................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TGATCTTGAAGTTGAACGTGAG..... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AAGATCCGTTTGCTCCAAG............................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GATGATCTTGAGGTTGAACGT........ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AGGATCTTGAAGTTGAACGTGAGCTGC. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGGAGGATAAGATCCGTTTGCTCC............................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TTTGCTCCAAGATGATCTTGAAGTTG............. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATAAGATCCGTTTGCTCCAAG............................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ATCCTGAAGTTGAACGTGAGCTGC. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GAGGATAAGATCCGTTTGCTCC............................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AGATCCGTTTGCTCCAAGATGAT....................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TAAGATCCGTTTGCTCCAA............................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ATGATCTTGAAGTTGAACGTGAGC.... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTAAAGTGGAACGTGAGCTGGG 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................AGAATAGGATCCGGTTGCT................................. 19 3 8 0.25 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TATATTTGACTTTTGTTCTAAAA.......................................................................................................................................... 23 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................ATTTGCTCCGAGATGATC...................... 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................TTAAAGTTGTACGTGAGCTGG. 21 3 10 0.20 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0
...........................................................................................................................................................................................................................CAAGAGGATCTAGAAGTT.............. 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................ATCCAAATGAAAACCTCAGTT...................................................................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................................ATAAGATCCGTGTGCTCCAA............................. 20 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................................AGTTGTACGTGAGCTGGG 18 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................TTAAAGTGGCACGTGAGCTG.. 20 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

GATATATATGTATACGCAGCCACTTTTAATACATTGTTCGTGGAGGCTCTATGTGTAACTTTTTTACGCTATTTATTTTTATGTATATGCATATAAACTTAAAACACGTTTTTCATTTTGTCTTTGAGCTTTTGAACACGCTTTTAATTTTACTTTTGGAGTTAAAGTTGTACTTATGTTTATACTATATAAAAGAACGTCCTATTCTAGGCAAACGAGGTTCTACTAGAACTTCAACTTGCACTCGACGC
**************************************************...............(((((.(((((...((.(((((..((((.(((((.((((((((((........................)))))))))).))))).(((((.......)))))......))))..))))))).)))))..))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 M047
female body
 SRR060684
140x9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060667
160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060680
 9xArg_testes_total
 V053
head
 SRR060662
9x160_0-2h_embryos_total
 SRR060656
9x160_ovaries_total
 SRR060677
Argx9_ovaries_total
 M027
male body		 SRR060681
Argx9_testes_total
.........................TTAATTCATTGTTCCTGAAG.............................................................................................................................................................................................................. 20 3 18 3.67 66 0 2 11 9 7 5 3 2 1 8 6 5 2 2 1 1 0 0 1 0 0 0 0
..........................TAATTCATTGTTCCTGAAG.............................................................................................................................................................................................................. 19 3 20 3.20 64 0 1 10 8 3 5 7 8 8 0 2 3 2 1 2 1 2 0 0 0 0 0 1
............................................................................................................................................................................................................TTCTAGGCAAACGAGGTTCTACTAG...................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TTTTACTTTCGGTCTTAAAGT................................................................................... 21 3 20 0.75 15 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TTTTACTTTCGGTGTTAAAGT................................................................................... 21 2 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TTACTGTGGGAGTTAAGGTTGT................................................................................ 22 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................AATTTTTCTTTTGGAGCTA....................................................................................... 19 2 19 0.11 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0
.........................................................................................................................................CCGCTTTTAATTTTACATTT.............................................................................................. 20 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................TTTGTCTTAGAGATTTTG..................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:6400956-6401206 - dvi_18655 CTATATATACA------------TATGCGTCGGTGAA-AATTATGTAACAAGCACCTCCGAGATACACATTGAAAAAATGCGATAAATAAAAATACATAT---------------------------------------------------AC--GTATATTTG-----------------AA--TTTTGTGCAAAAAGTAAAACAGAAACTC-------G-----------------------------------------------------------AAAACTTG-------------TGCGAAAATTAAAATGAAAACCTCAATT------------------------------------------------------------------------------TC----AA---------------------------------------------C-----ATGAATACA-AATATGATATATTT------TCTTGCAGGATAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGCTGCG
droMoj3 scaffold_6680:4720960-4721217 - ATATATA----------------TATGCGTCGGTGAA-AATTATGTAACAAGCACCTC-GAGATACACATTGAAA-AATGCGATAAA-AAAAATACATAT---------------------------------------------------A------TATACT--TA-------------AA--TTTTGTGCGAAAAA-----------CTCT------G-----------------------------------------------------------AAAA-------------TTGGTGTGAAAAT----------------ATTTCAAGAAAAAATTG--C--TGAAA-AATATTG------AAT---------------------------------------------------------------------ATAAAAATTGAAGCTAAA---A-----CTGAATACAAAATAT---GAATTT------TCTTGCAGGATAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGCTGCG
droGri2 scaffold_15110:6342909-6343158 + ATATATATATA------------AATGCGTTGGTGAA-AATTATGTAACAAGCACCTGCGAGATACACAATGA--------------------------------------------------------------------------------------------------------AAAA-----TTCGCTAAAAA--------AGT----TAATC---G-----------------------------------------------------------AAAATTTGTGCTGAAACTAAGTGTG-------------------------------AAAATTG--AAAA-----AAAAAGA------AAAAAAAAGAAAAAGAAAAATAAAATATAAATGAAAAATTTC----GT---------------------------------------------C-----ATGAATACA-AATAT---GAATTT------TTTTGCAGGACAAGATCCGTTTGCTCCACGATGATCTGGAAGTTGAACGTGAGCTGCG
droWil2 scf2_1100000004511:8119044-8119229 + ATACATATTT-TGCATAT----------------------------------------------------AGAATGATTG---TATATAAGTTTGCATAT--------AT-----------------------------------------GT------ATGAGATGAGA-AGATGATGAA-----TTTGTAAACTAA-------------------------------------------------------------------------------ATGAGATTATCTATTCAAAGTAATAGT-----------------------------------------------------------------------------AAA-TGA--------------------------------------------------------------------------------------------TGAA--ATTTTTCAAATTTTCCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAATTGCG
dp5 XR_group8:8851831-8852080 + ATATACATACTCGCACATACATATATGCATTGCTAAA-AATTATGTAATGACCACCTCCGAGAGATATATAGA-------------------------------------------------------------------------------------------AAAACATCGAAGAAAA---TG-TCAG-------------------------------TGTGTT--TAAGTGTTA---AAAAAAAAAAAATAATAATACATAGTTTCGAAAAC---------------------------CGATAA-------------------------------TTG--CA--------------------------------ATTAA-AGA-----------------------------------------------------------------TCACTGAT-----CTGAATA---TTTATTCACAATTT------TTTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAATTGCG
droPer2 scaffold_50:354327-354576 - ATATACATACTCGCACATACATATATGCATTGCTAAA-AATTATGTAATGACCACCTCCGAGAGATATATAGA-------------------------------------------------------------------------------------------AAAACATCGAAGAAAA---TG-TCAG-------------------------------TGTGTT--TAAGTGTTA---AAAAAAAAAAAATAATAATACATAGTTTCGAGAAC---------------------------CGATAA-------------------------------TTG--CA--------------------------------ATTAA-AGA-----------------------------------------------------------------TCACTGAT-----CTGAATA---TTTATTCACAATTT------TTTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAATTGCG
droAna3 scaffold_13337:7903165-7903423 + TTGTATATACA------------TATGCATTGCTAAA-AATTATGTAAT-ACCACCTCCGAGCGATACGTA------------------------CCTACAC--GTATATATCTTTCAAATAGTCGAAAATTAA-AAATCGGAATAT----ATACGTATA-----------------------TG-TCTGTGTAGAAAT-------------CAATC--C-TGTGCT-TAAAGTGCTA-------------------------------------------------------------------------------------------------------------ATTAAAT----------------ACATATCAAATGAA-AAA-----------------------------------------------------------------TATA---T-----CTAAATAAA----ATTCAACGTTT------TCTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAACTGCG
droBip1 scf7180000396541:59656-59925 + TTGTATATACA------------TATGCATTGCTAAA-AATTATGTAAT-ACCACCTCCGAGCGATACGTT------------------------CATACA------TATATCTTTCAAAGAGTCGAAAATTAAAAAATCGGAA-----------------------------TACATATA--T-TTTTGTGTAGAAAT-------------CAATC--C-TGTGCT-TATAGTGCT---------------------------------------AATG--------------------------------------------------------G---CAA--CGATAAA--AATATGA------AATATTTATAAAATGAAAAAA-----------------------------------------------------------------TATA---T-----CTAAATAAA----ATTCAACGTTT------TCTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGCTGCG
droKik1 scf7180000302474:228399-228650 + CTGTATATACA------------TATGCATTGCTAAA-AATTATGTAATGGCCACCGCCGAGCGATATATA------------------------CATATAC--G---------------------AAAA-----------------------------AAAAGAAATCATCGAAGAAAAA--T-ATTTGTGAAGAAAC-------------CAATG--C-TGTGCTA-ATAGTGCCA----------------------------------------TA--------------------------------------------------------A--AT-------TCAAA-AATATAA------ATTATTAAGCCCATGAA-AGA-----------------------------------------------------------------TCCC---T-----CTGAATAAA-TGTATCCACCATTT------TCTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAATTGCG
droFic1 scf7180000449809:5890-5937 + CTATATGTTTC------------TGTGCGCAGCGT---------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCATAATGTGCGACAGGAACTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490629:15430-15548 + GTATATATGTA------------TATATGTATATATG-T---------------------------------------------AT------------ATATGTATATATGTATAT-ATG----------------------TATATATGT----ATATA----------------------------------TG---------------------------------------------------------------------------------------------------------TATATATGTATATATGTATATATGTATA------------------------------------------------------------------------------TATGTATATATGTATA-------------------------------------T-----ATGTAT-------------------------------------------------------------------------------AAA
droRho1 scf7180000757774:56-315 - CTGTATATACA------------TATGCATTGCTAAA-AATTATGTAATGGCCACCTCTGAGCGATACGTA------------------------CATAT---------------------------------------------------A------TATACGAAAACATCGAAGAAAAA--A-TTTTGTGAAAAAAT-------------CAATG--C-TGTGCTAAAAAGTGATTT-------------------------------------AA-G--------------------------------------------------------AAAAATTAAAAATGAAGAAATATGA------AAAAATTAACCCATACA-AGA-----------------------------------------------------------------ACGT---A-----CTGAATAAA-TGTATCCTCAATTT------TCTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCG
droBia1 scf7180000301232:32825-32925 - ATATGTATATG------------TATGTGTATGTGTA-T---------------------------------------------AT------------GTATATGTATAT-------------------------------------------------------GTATATCGTATATGTA-----TATGTATATGTAT-------------ATG--------------------------------------------------------------------------------------------TATATGTATATGTATAT------------------------------------------------------------------------------------------------------------------------------------------------GTATATG-TATAT-------------------------------------------------------------------------
droEug1 scf7180000408993:1892-2063 + GTATATATGTA------------TATATGTATATATG-T---------------------------------------------AT------------ATATGTATATATGTATAT-ATG----------------------TATATATGT----ATATA----------------------------------TG---------------------------------------------------------------------------------------------------------TATATATGTTTATTTGTATATATGTATT------------------------------------------------------------------------------TA----CACATGTATACATAAATAAATTTAAGATTAGAACTGAGAATTTG---ACTGACCTTGATGCA---------------------------AGAATGGTATTTGCTTGC----------------------------------
dm3 chr3L:8737382-8737639 - CTGTATATACA------------TATGCATTGCTAAAAAATTATGTAATGGCCACCTCTGGGCAATACATA----------------------------T---------------------------------------------------AC------ACGAGAAAACATCGAAGAAAAA-----TTTGTGAAGAAAT-------------CAATCAAC-TGTGCTGTAAAGTGCTTTTT-----------------------------------AATG--------------------------------------------------------AATGTTT--TAATCAAATAATATGA------AATAACGAGCCCATAAA-AGA-----------------------------------------------------------------TCAA---A-----CTCAATAAA-TGTATCCACCATTT------TCTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCG
droSim2 3l:8526910-8527164 - CTGTATATACA------------TATGCATTGCTAAA-AATTATGTAATGGCCACCTCTGGGCAATACATA----------------------------T---------------------------------------------------AC------AAGAGAAAACATCGAAGAAAAA-----TTTGTGAAGAAAT-------------CAATA--C-TGTGCTGTAAAGTGCTTTTT-----------------------------------AATG--------------------------------------------------------AAATTTG--CAATCAAATGATATGA------AATAACGAGCCCATAAA-AGA-----------------------------------------------------------------TCAC---A-----CTCAATAAA-TGTATCCACCATTT------TCTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCG
droSec2 scaffold_0:1014913-1015160 - CTGTATATACA------------TATGCATTGCTAAA-AATTATGTAATGGCCACCTCTGGGCAATACATA----------------------------T---------------------------------------------------AC------AAGAGAAAACATCGAAGAAAAA-----TTTGTGAAGAAAT-------------CAATA--C-TGTGCTGTAAAGTGCTTTGT-----------------------------------AATG--------------------------------------------------------AAAGTTG--CAATCAAATAATATGA------AATAACAAGCCCA-------------------------------------------------------------------------TCAC---A-----CTCAATAAA-TTTATCCACCATTT------TCTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCG
droYak3 3L:3172733-3173000 + CTGTATATACA------------TATGCATTGCTAAAAAATTATGTAATGGCCACCTCTGGGCAATACATA----------------------------T---------------------------------------------------ACTCGTACATGCGAAAACATCGAAGAAAAA-----TGTGTGAAGAAAT-------------CAATG--C-TGTGCTGTAAAGTGCTTTTT-----------------------------------AATG--------------------------------------------------------AAAGTTT--CAATCAAATCATATGAAATAGAAATAATGAGCCCATAAA-AGA-----------------------------------------------------------------TCAC---A-----CTCAATAAA-TGTATCCACCATTT------TCTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCG
droEre2 scaffold_4784:5305296-5305552 + CTGTATATACA------------TATGCATTGCTAAA-AATTATGTAATGGCCACCTCTGGGCAATACATA----------------------------T---------------------------------------------------AC--ATAGATGAGAAAACATCGAAGAAAAA-----TTTGTGAAGAAAT-------------CAATG--C-TGTGCTGTAAAGTGCTTTTT-----------------------------------AATG--------------------------------------------------------AAAGTTT--CAATCAAATC--ATGA------AATAATGAGTCCATAAA-AGA-----------------------------------------------------------------TCAC---A-----CTCAATAAA-TGTATCCACCATTT------TCTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CTATATATACA------------TATGCGTCGGTGAA-AATTATGTAACAAGCACCTCCGAGATACACATTGAAAAAATGCGATAAATAAAAATACATAT---------------------------------------------------AC--GTATATTTG-----------------AA--TTTTGTGCAAAAAGTAAAACAGAAACTC-------G-----------------------------------------------------------AAAACTTG-------------TGCGAAAATTAAAATGAAAACCTCAATT------------------------------------------------------------------------------TC----AA---------------------------------------------C-----ATGAATACA-AATATGATATATTT------TCTTGCAGGATAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGCTGCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAGCTGC.2813.003000300000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGATCCGTTTGCTCCAA.............................2012.002000100001000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAGC....2512.002000200000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATCTTGAAGTTGAACGTGA......2412.002000000000000000000000010000000000000000000000000000000000000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGATCCGTTTGCTCCAA.............................2112.002000000000000000100100000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAGCT...2611.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAAC..........1911.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGATCCGTTTGCTCCAAGATG.........................2411.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCAAGATGATCTTGAA.................1911.001000000000000000000100000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAGATCCGTTTGCTCCAAG............................2311.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................ATTAAAATGAAAACCTCAA...................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGTTGAACGTGAGCT...1811.001000000000000000000000000000000000000000000000000000000000000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGATCCGTTTGCTCCAAGATG.........................2311.001000000000000000000000000000000000000000000000000000000000000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCTTGAAGTTGAACGTGAG.....2211.001000000000010000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATCCGTTTGCTCCAAG............................1911.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTCCAAGATGATCTTGAAGTTG.............2611.001000000000000000010000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGATCCGTTTGCTCCAAG............................2111.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCCGTTTGCTCCAAGATGAT.......................2311.001000000000000000000000000000000000000000000000000000000000000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGATCCGTTTGCTCCAA.............................1911.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCTTGAAGTTGAACGTGAGC....2411.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
ATATATA----------------TATGCGTCGGTGAA-AATTATGTAACAAGCACCTC-GAGATACACATTGAAA-AATGCGATAAA-AAAAATACATAT---------------------------------------------------A------TATACT--TA-------------AA--TTTTGTGCGAAAAA-----------CTCT------G-----------------------------------------------------------AAAA-------------TTGGTGTGAAAAT----------------ATTTCAAGAAAAAATTG--C--TGAAA-AATATTG------AAT---------------------------------------------------------------------ATAAAAATTGAAGCTAAA---A-----CTGAATACAAAATAT---GAATTT------TCTTGCAGGATAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGCTGCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAG.....2413.003000003
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAAC..........1913.003100002
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGATCCGTTTGCTCCAAG............................2113.003200010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGATGATCTTGAAGTTGAACGTGAG.....2711.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAGCTG..2711.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAGCT...2611.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGATCTTGAAGTTGAACGT........2311.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCAAGATGATCTTGAAGTTGAACG.........2711.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATCCGTTTGCTCCAAG............................1911.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAGATCCGTTTGCTCCAA.............................2211.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCCAAGATGATCTTGAAG................2111.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTTGCTCCAAGATGATCTTGA..................2411.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCTCCAAGATGATCTTGAAGTTGAA...........2911.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGATGATCTTGAAGTTGAACG.........2511.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGATCCGTTTGCTCCAA.............................2011.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGT........2111.001001000
droGri2
ATATATATATA------------AATGCGTTGGTGAA-AATTATGTAACAAGCACCTGCGAGATACACAATGA--------------------------------------------------------------------------------------------------------AAAA-----TTCGCTAAAAA--------AGT----TAATC---G-----------------------------------------------------------AAAATTTGTGCTGAAACTAAGTGTG-------------------------------AAAATTG--AAAA-----AAAAAGA------AAAAAAAAGAAAAAGAAAAATAAAATATAAATGAAAAATTTC----GT---------------------------------------------C-----ATGAATACA-AATAT---GAATTT------TTTTGCAGGACAAGATCCGTTTGCTCCACGATGATCTGGAAGTTGAACGTGAGCTGCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ATACATATTT-TGCATAT----------------------------------------------------AGAATGATTG---TATATAAGTTTGCATAT--------AT-----------------------------------------GT------ATGAGATGAGA-AGATGATGAA-----TTTGTAAACTAA-------------------------------------------------------------------------------ATGAGATTATCTATTCAAAGTAATAGT-----------------------------------------------------------------------------AAA-TGA--------------------------------------------------------------------------------------------TGAA--ATTTTTCAAATTTTCCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAATTGCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAAC..........1915.00500410
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAATT...2613.00300120
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCTTGAAGTTGAAC..........1812.00220000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATCTTGAAGTTGAAC..........2012.00200020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAATTGC.2812.00200110
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAAT....2512.00200200
.....................................................................................................................................................................................................................................................................................................AAAGTAATAGT-----------------------------------------------------------------------------AAA-TGA--------------------------------------------------------------------------------------------TGA.......................................................................2011.00100010
............................................................................................................AT-----------------------------------------GT------ATGAGATGAGA-AGATGATGA......................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGATCCGTTTGCTCCA..............................1911.00110000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGATCCGTTTGCTCCG..............................2011.00110000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATCCGTTTGCTCCAAG............................1911.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAAGTTGAACGTGAATTG..2111.00100010
....................................................................................ATATAAGTTTGCATAT--------AT-----------------------------------------GT------...........................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGATCTTGAAGTTGAACGTGAATT...2811.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTG.......2211.00100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGAAGTTGAACGTG.......1811.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGATCCGTTTGCTCCAAG............................2211.00100100
dp5
ATATACATACTCGCACATACATATATGCATTGCTAAA-AATTATGTAATGACCACCTCCGAGAGATATATAGA-------------------------------------------------------------------------------------------AAAACATCGAAGAAAA---TG-TCAG-------------------------------TGTGTT--TAAGTGTTA---AAAAAAAAAAAATAATAATACATAGTTTCGAAAAC---------------------------CGATAA-------------------------------TTG--CA--------------------------------ATTAA-AGA-----------------------------------------------------------------TCACTGAT-----CTGAATA---TTTATTCACAATTT------TTTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAATTGCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAAGTTGAACGTGAATTG..2112.0020200000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCGTTTGCTCCAAGATGAT.......................2212.0020200000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAAC..........1911.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGAAGTTGAACGTGAATTGC.2411.0010000000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAATT...2611.0010000000001
droPer2
ATATACATACTCGCACATACATATATGCATTGCTAAA-AATTATGTAATGACCACCTCCGAGAGATATATAGA-------------------------------------------------------------------------------------------AAAACATCGAAGAAAA---TG-TCAG-------------------------------TGTGTT--TAAGTGTTA---AAAAAAAAAAAATAATAATACATAGTTTCGAGAAC---------------------------CGATAA-------------------------------TTG--CA--------------------------------ATTAA-AGA-----------------------------------------------------------------TCACTGAT-----CTGAATA---TTTATTCACAATTT------TTTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAATTGCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAAC..........1912.002010001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGATCCGTTTGCTCCAA.............................2112.002200000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTGAAGTTGAACGTG.......1911.001010000
.......................................................................................................................................................................................TG-TCAG-------------------------------TGTGTT--TAAGTGC..............................................................................................................................................................................................................................................................................................................................1911.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAA.....2411.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAAT....2511.001001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAATT...2611.001001000
droAna3
TTGTATATACA------------TATGCATTGCTAAA-AATTATGTAAT-ACCACCTCCGAGCGATACGTA------------------------CCTACAC--GTATATATCTTTCAAATAGTCGAAAATTAA-AAATCGGAATAT----ATACGTATA-----------------------TG-TCTGTGTAGAAAT-------------CAATC--C-TGTGCT-TAAAGTGCTA-------------------------------------------------------------------------------------------------------------ATTAAAT----------------ACATATCAAATGAA-AAA-----------------------------------------------------------------TATA---T-----CTAAATAAA----ATTCAACGTTT------TCTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAACTGCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATCTTGAAGTTGAACGTGA......2412.002000020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAA.....2412.002000011
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATCTTGAAGTTGAACGTGAACT...2711.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATCTTGAAGTTGAACGTGAA.....2511.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATCCGTTTGCTCCAA.............................1811.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAA...........1811.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGA......2311.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCTCCAAGATGATCTTGAA.................2311.001000001
.........................................TATGTAAT-ACCACCTCCGAGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGATCCGTTTGCTCCAAG............................2211.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGT........2111.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGATCCGTTTGCTCCAAGATGAT.......................2611.001000001
droBip1
TTGTATATACA------------TATGCATTGCTAAA-AATTATGTAAT-ACCACCTCCGAGCGATACGTT------------------------CATACA------TATATCTTTCAAAGAGTCGAAAATTAAAAAATCGGAA-----------------------------TACATATA--T-TTTTGTGTAGAAAT-------------CAATC--C-TGTGCT-TATAGTGCT---------------------------------------AATG--------------------------------------------------------G---CAA--CGATAAA--AATATGA------AATATTTATAAAATGAAAAAA-----------------------------------------------------------------TATA---T-----CTAAATAAA----ATTCAACGTTT------TCTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGCTGCGSizeHit CountTotal NormTotal
No Reads
droKik1
CTGTATATACA------------TATGCATTGCTAAA-AATTATGTAATGGCCACCGCCGAGCGATATATA------------------------CATATAC--G---------------------AAAA-----------------------------AAAAGAAATCATCGAAGAAAAA--T-ATTTGTGAAGAAAC-------------CAATG--C-TGTGCTA-ATAGTGCCA----------------------------------------TA--------------------------------------------------------A--AT-------TCAAA-AATATAA------ATTATTAAGCCCATGAA-AGA-----------------------------------------------------------------TCCC---T-----CTGAATAAA-TGTATCCACCATTT------TCTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAATTGCGSizeHit CountTotal NormTotal
No Reads
droFic1
CTATATGTTTC------------TGTGCGCAGCGT---------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCATAATGTGCGACAGGAACTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GTATATATGTA------------TATATGTATATATG-T---------------------------------------------AT------------ATATGTATATATGTATAT-ATG----------------------TATATATGT----ATATA----------------------------------TG---------------------------------------------------------------------------------------------------------TATATATGTATATATGTATATATGTATA------------------------------------------------------------------------------TATGTATATATGTATA-------------------------------------T-----ATGTAT-------------------------------------------------------------------------------AAASizeHit CountTotal NormTotal
No Reads
droRho1
CTGTATATACA------------TATGCATTGCTAAA-AATTATGTAATGGCCACCTCTGAGCGATACGTA------------------------CATAT---------------------------------------------------A------TATACGAAAACATCGAAGAAAAA--A-TTTTGTGAAAAAAT-------------CAATG--C-TGTGCTAAAAAGTGATTT-------------------------------------AA-G--------------------------------------------------------AAAAATTAAAAATGAAGAAATATGA------AAAAATTAACCCATACA-AGA-----------------------------------------------------------------ACGT---A-----CTGAATAAA-TGTATCCTCAATTT------TCTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGSizeHit CountTotal NormTotal
No Reads
droBia1
ATATGTATATG------------TATGTGTATGTGTA-T---------------------------------------------AT------------GTATATGTATAT-------------------------------------------------------GTATATCGTATATGTA-----TATGTATATGTAT-------------ATG--------------------------------------------------------------------------------------------TATATGTATATGTATAT------------------------------------------------------------------------------------------------------------------------------------------------GTATATG-TATAT-------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GTATATATGTA------------TATATGTATATATG-T---------------------------------------------AT------------ATATGTATATATGTATAT-ATG----------------------TATATATGT----ATATA----------------------------------TG---------------------------------------------------------------------------------------------------------TATATATGTTTATTTGTATATATGTATT------------------------------------------------------------------------------TA----CACATGTATACATAAATAAATTTAAGATTAGAACTGAGAATTTG---ACTGACCTTGATGCA---------------------------AGAATGGTATTTGCTTGC----------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CTGTATATACA------------TATGCATTGCTAAAAAATTATGTAATGGCCACCTCTGGGCAATACATA----------------------------T---------------------------------------------------AC------ACGAGAAAACATCGAAGAAAAA-----TTTGTGAAGAAAT-------------CAATCAAC-TGTGCTGTAAAGTGCTTTTT-----------------------------------AATG--------------------------------------------------------AATGTTT--TAATCAAATAATATGA------AATAACGAGCCCATAAA-AGA-----------------------------------------------------------------TCAA---A-----CTCAATAAA-TGTATCCACCATTT------TCTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATCTTGAAGTTGAACGTGA......2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000010000000000000000000000000000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATCCGTTTGCTCCAA.............................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATCTTGAAGTTGAACGTGAGT....2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGATCCGTTTGCTCCAA.............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGATCTTGAAGTTGAACGTGAGT....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCCGTTTGCTCCAAGATGA........................2211.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAGT....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGATCCGTTTGCTCCAA.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAAC..........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATCTTGAAGTTGAAC..........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGAAGTTGAACGTGA......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGATCCGTTTGCTC................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................GA------AATAACGAGCCCATAAA-AGA-----------------------------------------------------------------TC...................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACG.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TGTAATGGCCACCTCTGGGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATCTTGAAGTTGA............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATCTTGAAGTTGAACG.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGATCTTGAAGTTGAAC..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGATCCGTTTGCTCCA..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAGATCCGTTTGCTCCAA.............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGAAGTTGAACGTGAGTTG..2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
droSim2
CTGTATATACA------------TATGCATTGCTAAA-AATTATGTAATGGCCACCTCTGGGCAATACATA----------------------------T---------------------------------------------------AC------AAGAGAAAACATCGAAGAAAAA-----TTTGTGAAGAAAT-------------CAATA--C-TGTGCTGTAAAGTGCTTTTT-----------------------------------AATG--------------------------------------------------------AAATTTG--CAATCAAATGATATGA------AATAACGAGCCCATAAA-AGA-----------------------------------------------------------------TCAC---A-----CTCAATAAA-TGTATCCACCATTT------TCTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGATGATCTTGAAGTTGAAC..........2212.00200200000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGATCCGTTTGCTCCAAG............................2212.00200110000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGATCCGTTTGCTCCA..............................1812.00200100000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAAC..........1912.00200200000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATCCGTTTGCTCCAAGATG.........................2211.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGATCCGTTTGCTCC...............................1911.00100100000000000000
droSec2
CTGTATATACA------------TATGCATTGCTAAA-AATTATGTAATGGCCACCTCTGGGCAATACATA----------------------------T---------------------------------------------------AC------AAGAGAAAACATCGAAGAAAAA-----TTTGTGAAGAAAT-------------CAATA--C-TGTGCTGTAAAGTGCTTTGT-----------------------------------AATG--------------------------------------------------------AAAGTTG--CAATCAAATAATATGA------AATAACAAGCCCA-------------------------------------------------------------------------TCAC---A-----CTCAATAAA-TTTATCCACCATTT------TCTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAA...........1811.0011000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATCTTGAAGTTGAACGTGAGT....2611.0010100
droYak3
CTGTATATACA------------TATGCATTGCTAAAAAATTATGTAATGGCCACCTCTGGGCAATACATA----------------------------T---------------------------------------------------ACTCGTACATGCGAAAACATCGAAGAAAAA-----TGTGTGAAGAAAT-------------CAATG--C-TGTGCTGTAAAGTGCTTTTT-----------------------------------AATG--------------------------------------------------------AAAGTTT--CAATCAAATCATATGAAATAGAAATAATGAGCCCATAAA-AGA-----------------------------------------------------------------TCAC---A-----CTCAATAAA-TGTATCCACCATTT------TCTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAAC..........1913.00300100020000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAGT....2513.00300100020000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGATCCGTTTGCTCC...............................1913.00330000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATCTTGAAGTTGAACGTGAGT....2612.00200000020000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATCTTGAAGTTGAACGT........2211.00100000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATCTTGAAGTTGAACGTGAGTT...2711.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATCCGTTTGCTCCAAG............................1911.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAGTTGC.2811.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGAACGTGAGTTGC.1911.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTTGCTCCAAGATGATCTT....................2211.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAGTTGCG2911.00100000010000
......................................................CCTCTGGGCAATACATA----------------------------T---------------------------------------------------ACTCGTACA..........................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...................................................................................................................................................................GAAAACATCGAAGAAAAA-----TGC.............................................................................................................................................................................................................................................................................................................................................................................2120.50100100000000
droEre2
CTGTATATACA------------TATGCATTGCTAAA-AATTATGTAATGGCCACCTCTGGGCAATACATA----------------------------T---------------------------------------------------AC--ATAGATGAGAAAACATCGAAGAAAAA-----TTTGTGAAGAAAT-------------CAATG--C-TGTGCTGTAAAGTGCTTTTT-----------------------------------AATG--------------------------------------------------------AAAGTTT--CAATCAAATC--ATGA------AATAATGAGTCCATAAA-AGA-----------------------------------------------------------------TCAC---A-----CTCAATAAA-TGTATCCACCATTT------TCTTGCAGGACAAGATCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATCCGTTTGCTCCAA.............................1812.0020000020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTGAGT....2512.0020000020
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGATCTTGAAGTTG.............1811.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAA...........1811.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGATCCGTTTGCTCCAA.............................2111.0010001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAACGTG.......2211.0010001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGATCCGTTTGCTCCA..............................2011.0010001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAAGTTGAACGTGAGTTGC.2211.0010100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTTGAAGTTGAAC..........1911.0010100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCTTGAAGTTGAACGTGAGT....2411.0010000010

Generated: 05/16/2015 at 08:28 PM