ID:

dvi_18652

 Coordinate:

scaffold_13049:6398667-6398817 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_12279:3]; CDS [Dvir\Prm-cds]; intron [Dvir\Prm-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTTATGGGCTGTTTGAATTTGCCGCAATGCATCATGGTCTGTGCATTGCGTGTGGGATGGCTAAAAACTGGCCTTAAAAATAGATATGCAGAATTATGAAAAACTACAGAGATAAATGTATGATATGCATATGTGTGTCTAAGCCAATTACACATATGACAAAAAATATTAAGCCCAAATCTGTTTAAATTTATTTGCAGATCGAGCGCGAGAAAGCCGACCTCAGCGTTCAGGTCATACAGATGTCCGA
**************************************************.(((.....(((((.....)))))......)))....((((((....((((.....(((((.......((.(((((((((((((((((...........)))))))))).)).....))))).)).....))))).....)))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060667
160_females_carcasses_total
 M061
embryo
 SRR060668
160x9_males_carcasses_total
 SRR060664
9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 M047
female body
 M028
head
 SRR060666
160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060679
140x9_testes_total
 V047
embryo
 V053
head
 V116
male body
....................................................................................................................................................................................................................GAAAGCCGACCTCAGCGTTCAGGTC.............. 25 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................GGTCATACAGATGTCCGA 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................AAGGATCGAGCGCGAGAAAGCCGACCT........................... 27 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GAGAAAGCCGACCTCAGCGTTCAGGTC.............. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GAGAAAGCCGACCTCAGCGTTCAGGTCA............. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................AGTTATGAAAAACTACAGAGA.......................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AGCCGACCTCAGCGTTCAGGTC.............. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CAGCGTTCAGGTCATACAGAT...... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AAGGATCGAGCGCGAGAAAGCC................................ 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CGAGAAAGCCGACCTCAGCGTTCAGGTC.............. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................GGATCGAGCGCGAGAAAGCC................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GCGTTCAGGTCATACAGATGTCCG. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GAAAGCCGACCTCAGCGTTCA.................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AAGGATCGAGCGCGAGAAAGCCG............................... 23 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................AAGCCGACCTCAGCGTTCAGGT............... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................CCTCAGCGTTCAGGTCATACAG........ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GATCGAGCGCGAGAAAGCC................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................GAAAGCCGACCTCAGCGTTCAGGT............... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ATCGAGCGCGAGAAAGCCGACCT........................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CGAAAGCCGACCTCAGCGTTCAGGT............... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AAGCCGACCTCAGCGTTCA.................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACAGATCGCGCGCGAGGAAGC................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................AAGGATCGAGCGCGAGAAAGC................................. 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................TGCCTCAAGGCATCATGG..................................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................TGCTTTGCGAGTGGGATG............................................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........GTTTGAACGTGCCGCAATCC............................................................................................................................................................................................................................ 20 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................AAATAGATCTTCAGGATTATG........................................................................................................................................................ 21 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AAAATACCCGACAAACTTAAACGGCGTTACGTAGTACCAGACACGTAACGCACACCCTACCGATTTTTGACCGGAATTTTTATCTATACGTCTTAATACTTTTTGATGTCTCTATTTACATACTATACGTATACACACAGATTCGGTTAATGTGTATACTGTTTTTTATAATTCGGGTTTAGACAAATTTAAATAAACGTCTAGCTCGCGCTCTTTCGGCTGGAGTCGCAAGTCCAGTATGTCTACAGGCT
**************************************************.(((.....(((((.....)))))......)))....((((((....((((.....(((((.......((.(((((((((((((((((...........)))))))))).)).....))))).)).....))))).....)))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060682
9x140_0-2h_embryos_total
 V047
embryo
 SRR060679
140x9_testes_total
 SRR060669
160x9_females_carcasses_total
...............................................ACGCACACCCTACCGATTT......................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
.............................................................................................TAGTACTTCTTGAAGTCTCTATT....................................................................................................................................... 23 3 3 0.33 1 0 1 0 0 0
.................................................................................................................................................................................................CAAAGGTTTAGCTCGCGCTC...................................... 20 3 9 0.11 1 0 0 1 0 0
...............................................................................................................CTATTTGCATACTAAGCGTA........................................................................................................................ 20 3 10 0.10 1 0 0 0 1 0
.......................................................CCTACCAATTTTTCAACGGA................................................................................................................................................................................ 20 3 13 0.08 1 0 0 0 0 1
..........................................................................................................................................................................................................................GTTGGAGTCCCAGGTCCAG.............. 19 3 17 0.06 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:6398617-6398867 - dvi_18652 TTTT---ATGGGCTGTTTGAATTTGCC-GCAATGCATCATGGTCTGTGCATTGCGTGTGGGATGGCTAAAAAC-----------------------------------------------------------TGGCCTTAAAAATAGA--TATGC--A-GA--ATTATGAAAAA--CTAC--AGAG----------------------------------ATAAATGTAT----GATATGCATATG---TGTGTCTAAGCC--AATTACACA-TATGACA--AAAAATATTA-----------------------------------------------------------------AGCCCAA-----------------------------------------------------------------ATCTGTTTAAATT---------------TATTTGCAGATCGAGCGCGAGAAAGCCGACCTCAGCGTTCAGGTCATACAGATGTCCGA
droMoj3 scaffold_6680:4718618-4718947 - TTTT---ATGGGCCGTTTGAATTAGCT-GCAATGCATCATGGTCTGTGCACTGCGTGTGGGATGGCTGAAAA------------------------------------------------------------TGCCATCAGAAATAGA--T--GCAAA-GAAAATTATGAAAAA--AT-C--AGGGAAATATAGAAAGAGAGAGAGAAAATTATGA-AACAT-----TATGAAAGGTGTGTCTATAAATTATGTCCAAATC--AATTACACAATAAGTCAC-----ATATTATAGCG-CATTAAAAAATGATATAATGATATAAATATAGATTAATA-------------TA--TATCCAT-AA-------------ATCCTC----------------------------------------------------TTA--CC---------------TCTTTGCAGATCGAGCGCGAGAAAGCCGACCTCAGCGTTCAGGTCATACAGATGTCCGA
droGri2 scaffold_15110:6345162-6345427 + TTTT---ATGGTCCGTTTGAGTTTGTT-GCAATGCATCACGATCTCTGCATTGCATGTGGGCTGGCCAAAAACATGGGTTATA-----------------------------------------------------------AATAAAATTATGC--A--A--ATTACGAA-----CTAA--CGAT------------------------------AGATAT---TATAT----GAAATGTCTATAAATTCTATTCAATTAAAAATTACACAATATGACATCAAAAGAACTG-----------------------------------------------------------------AACTAAA------TTATGTTTTCCCCT-------------------------------------------------------------CCCCATT-----TATTTGCAGATCGAGCGCGAGAAAGCCGATCTCAGCGTTCAGGTCATACAGATGTCCGA
droWil2 scf2_1100000004511:8121463-8121668 + T---ATCATGGACCATTTGCATTGAAT-ATAGTTTAATGAGATCT-----------------------------------------------------------------------AGAATGATCGAAGT-CAAGTCTTGA--TTAGA----------TAG--ATTATGCATTAAGTAT------------------------------------------------------------GC-TAAG---TATG-CTA---------------------------------------------------------------------------------AGCTAACTAAGATAAGTCGTTTA-----------------------------------------------------ATTCATATACT-AATTTCTA---------TTG-----------TTATTACAGATCGAGCGTGAGAAAGCCGATCTCAGCGTTCAGGTCATACAGATGTCCGA
dp5 XR_group8:8854610-8854825 + TTTTATTATGGCCTGTTGGAAATTGCC-ATAGAGC---ATGCTCTATGCG---------------------------AATATCTATCTATAAATAGGAGCTTCTTTTTCTA-------------------------------------------------A--ATTATGAAATA--TAACCAAGAG----------------------------------GTAAAT-------------------------------------------------------------------------------------------------------------------------------TGCAAGTAAAAACTAATGAAAAGTCTCCTT-----------------------------------------------TCTCCTTT-------TTCCGTTTCTTGTT-GAACAGATCGAGCGCGAGAAAGCCGATCTCAGCGTTCAGGTCATACAGATGTCCGA
droPer2 scaffold_50:351583-351635 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATCGAGCGCGAGAAAGCCGATCTCAGCGTTCAGGTCATACAGATGTCCGA
droAna3 scaffold_13337:7905129-7905296 + TTTTATTATGGGCGGTTTGGATTGCTC-ATAGAGC---ATGCTATCTGCA--------------------------GGTTATTTAT----AGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTCTTTAT-TTTATCTATTACGAAATATCCTCTA------------ATTGTCT---AATATA---------------CAATTCCAGATCGAGCGCGAGAAAGCCGACCTCAGCGTTCAGGTCATCCAGATGTCCGA
droBip1 scf7180000396541:61596-61765 + TTTTATTATGGGCGGTTTGGATTGCTC-ATAGAGC---ATGCTATCTGCA--------------------------GGTTATTTAT----AGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTCCTAATATTTATCTCTTATGAAATATCCTCT-------------AATTGTCGAAAATAT----------------ATATTCCAGATCGAGCGCGAGAAAGCCGACCTCAGCGTTCAGGTCATCCAGATGTCCGA
droKik1 scf7180000302474:230345-230584 + TTTTATTATGGACCGTTTGAGTTG-TC----------------TGAGGCG--------------------------TGATATTTAT----AGGT-------TCT----TTCGATTATGAAATTTCGAATTTCATATT------TTAGA--TATGT--AAAG--ATTATGAAATAGGCTTC--AGAA----------------------------------A--TAT--------------------------------------------------TACA--AGAATTATTG-GGTCT-------------------------------------TATATATGATGAGAAAACCTTAAACT------AATCGTGGATTTCCTGT-------------------------------------------------------------T-----------ACCTTGCAGATCGAGCGCGAGAAAGCCGATCTCAGCGTTCAGGTCATTCAGATGTCCGA
droRho1 scf7180000757775:2121-2296 + TTTTATTATGGGCTGTTTGAGTAG-CC-ATAGAGC---ATAGCTAGCGCA--------------------------GGTTATTTAT----AGAT-------ATT----TTAGATTTCA-------------------------------------------------------------CAA------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCCCTAAGAGAATTTCAAGCT-----------------------------------------------------------------AAAGTT-GGTTTTTCCTTTA-----------AAATTCCAGATTGAGCGCGAGAAAGCCGATCTCAGCGTTCAGGTCATTCAGATGTCCGA
dm3 chr3L:8735474-8735650 - TTTTATTATGGGCTGTTTGAGTAG-CC-ACAGAGC---ATGGCTAGCGCA--------------------------GGGTATTTAT----AGAT-------CCT----TCACATTATA-------------------------------------------------------------CCA------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCGCTAATGAAATCTCTTCTT-----------------------------------------------------------------AATCTCTGCTTATATTCTTC-----------AAATTTCAGATCGAGCGCGAGAAAGCCGATCTCAGCGTTCAGGTCATTCAGATGTCCGA
droSim2 3l:8524990-8525166 - TTTTATTATGGGCTGTTTGAGTAG-CC-ACAGAGC---ATGGCTAGCGCA--------------------------GGGTATTTAT----AGAT-------CCT----TTACATTATA-------------------------------------------------------------CCA------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCCCCAATGGAATCTCGTCTT-----------------------------------------------------------------AATCTCTGCTTATATTCTTC-----------AAATTTCAGATCGAGCGCGAGAAAGCCGATCTCAGCGTTCAGGTCATTCAGATGTCCGA
droSec2 scaffold_0:1013011-1013187 - TTTTATTATGGGCTGTTTGAGTAG-CC-ACAGAGC---ATGGCAAGCGCA--------------------------GGGTATTTAT----AGAT-------CCT----TTACATTATA-------------------------------------------------------------CCA------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCCCTGATGGAATCTCGTCTT-----------------------------------------------------------------AATCTCTGCTTATATTCTTC-----------AAATTTCAGATCGAGCGCGAGAAAGCCGATCTCAGCGTTCAGGTCATTCAGATGTCCGA
droYak3 3L:3174790-3174977 + TTTTATTATGGCCCGTTTGAGTAG-CCACCAGAGC---ATGGCTGGCGCA--------------------------GGGTATTTAT----AGAT-------ATT----TTGGATTATA-------------------------------------------------------------CCA------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCCCCAATGGAATCTCTTC-----------------------------------------------------TAAT-CCTATGCTTAATCTCTACTTA-ATTCTTC-----------AAATTTCAGATCGAGCGCGAGAAAGCCGATCTCAGCGTTCAGGTCATTCAGATGTCCGA
droEre2 scaffold_4784:5307321-5307497 + TTTTATTATGGGCTGTTTGAGTAT-CC-ACAGAGC---ATGGCTAGCGCA--------------------------GGGTATTTAT----AGAT-------CTT----TTAGTTTATA-------------------------------------------------------------CCA------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCCCTAATGGAAGCCTTCCCT-----------------------------------------------------------------AATCTCTGCTTGTATTCTTC-----------CAATTTCAGATCGAGCGCGAGAAAGCCGATCTCAGCGTTCAGGTCATTCAGATGTCCGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTTT---ATGGGCTGTTTGAATTTGCC-GCAATGCATCATGGTCTGTGCATTGCGTGTGGGATGGCTAAAAAC-----------------------------------------------------------TGGCCTTAAAAATAGA--TATGC--A-GA--ATTATGAAAAA--CTAC--AGAG----------------------------------ATAAATGTAT----GATATGCATATG---TGTGTCTAAGCC--AATTACACA-TATGACA--AAAAATATTA-----------------------------------------------------------------AGCCCAA-----------------------------------------------------------------ATCTGTTTAAATT---------------TATTTGCAGATCGAGCGCGAGAAAGCCGACCTCAGCGTTCAGGTCATACAGATGTCCGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGACCTCAGCGTTCAGGTC..............2512.002000100000000000000100000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATACAGATGTCCGA1811.001000000000000000010000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGCCGACCTCAGCGTTCAGGTC..............2711.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGCCGACCTCAGCGTTCAGGTCA.............2811.001000000000000000000100000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGACCTCAGCGTTCAGGTC..............2211.001000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGTTCAGGTCATACAGAT......2111.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCCGACCTCAGCGTTCAGGTC..............2811.001000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCAGGTCATACAGATGTCCG.2411.001000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGACCTCAGCGTTCA..................2111.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCGACCTCAGCGTTCAGGT...............2211.001000000000000000000000000000000000000000000000000000000000000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCAGCGTTCAGGTCATACAG........2211.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGAGCGCGAGAAAGCC................................1911.001000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGACCTCAGCGTTCAGGT...............2411.001000000000000001000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGCGCGAGAAAGCCGACCT...........................2311.001000000000000000000100000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCGACCTCAGCGTTCA..................1911.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
TTTT---ATGGGCCGTTTGAATTAGCT-GCAATGCATCATGGTCTGTGCACTGCGTGTGGGATGGCTGAAAA------------------------------------------------------------TGCCATCAGAAATAGA--T--GCAAA-GAAAATTATGAAAAA--AT-C--AGGGAAATATAGAAAGAGAGAGAGAAAATTATGA-AACAT-----TATGAAAGGTGTGTCTATAAATTATGTCCAAATC--AATTACACAATAAGTCAC-----ATATTATAGCG-CATTAAAAAATGATATAATGATATAAATATAGATTAATA-------------TA--TATCCAT-AA-------------ATCCTC----------------------------------------------------TTA--CC---------------TCTTTGCAGATCGAGCGCGAGAAAGCCGACCTCAGCGTTCAGGTCATACAGATGTCCGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGAAAGCCGACCTCAGCGTTCAG.................2611.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGACCTCAGCGTTCAGG................2011.001001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGCCGACCTCAGCGTTCAGGTC..............2711.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGCCGACCTCAGC.......................1811.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGCGTTCAGGTCATACAGATGTCCG.2811.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGACCTCAGCGTTCAGGT...............2411.001100000
droGri2
TTTT---ATGGTCCGTTTGAGTTTGTT-GCAATGCATCACGATCTCTGCATTGCATGTGGGCTGGCCAAAAACATGGGTTATA-----------------------------------------------------------AATAAAATTATGC--A--A--ATTACGAA-----CTAA--CGAT------------------------------AGATAT---TATAT----GAAATGTCTATAAATTCTATTCAATTAAAAATTACACAATATGACATCAAAAGAACTG-----------------------------------------------------------------AACTAAA------TTATGTTTTCCCCT-------------------------------------------------------------CCCCATT-----TATTTGCAGATCGAGCGCGAGAAAGCCGATCTCAGCGTTCAGGTCATACAGATGTCCGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
T---ATCATGGACCATTTGCATTGAAT-ATAGTTTAATGAGATCT-----------------------------------------------------------------------AGAATGATCGAAGT-CAAGTCTTGA--TTAGA----------TAG--ATTATGCATTAAGTAT------------------------------------------------------------GC-TAAG---TATG-CTA---------------------------------------------------------------------------------AGCTAACTAAGATAAGTCGTTTA-----------------------------------------------------ATTCATATACT-AATTTCTA---------TTG-----------TTATTACAGATCGAGCGTGAGAAAGCCGATCTCAGCGTTCAGGTCATACAGATGTCCGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTCAGCGTTCAGGT...............1813.00300030
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGATCTCAGCGTTCA..................2111.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGATCTCAGCGTTCAGGT...............2111.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAGCGTTCAGGTC..............1811.00110000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGATCTCAGCGTTCA..................1811.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGATCTCAGCGTTCAGGTC..............2211.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGAGCGTGAGAAAGCCGAT.............................2211.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCGATCTCAGCGTTCAGGT...............2211.00100100
................................................................................................................................................................................................................................................................A---------------------------------------------------------------------------------AGCTAACTAAGATAAGTCGT..............................................................................................................................................................2111.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGCCGATCTCAGC.......................2011.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGTCATACAGATGTC...2011.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCGATCTCAGCGTTCAGGT...............2311.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCGATCTCAGCGTTCAG.................2011.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCAGCGTTCAGGTCATACAGATGTC...2711.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGCCGATCTCAGCGTTCAGGT...............2611.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCGATCTCAGCGTTCAGG................2111.00100010
dp5
TTTTATTATGGCCTGTTGGAAATTGCC-ATAGAGC---ATGCTCTATGCG---------------------------AATATCTATCTATAAATAGGAGCTTCTTTTTCTA-------------------------------------------------A--ATTATGAAATA--TAACCAAGAG----------------------------------GTAAAT-------------------------------------------------------------------------------------------------------------------------------TGCAAGTAAAAACTAATGAAAAGTCTCCTT-----------------------------------------------TCTCCTTT-------TTCCGTTTCTTGTT-GAACAGATCGAGCGCGAGAAAGCCGATCTCAGCGTTCAGGTCATACAGATGTCCGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGCGTTCAGGTCATACAGAT......2311.0010000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGCCGATCTCAGCGTTCA..................2211.0010000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGATCTCAGCGTTCAGGTCA.............2211.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAGCGTTCAGGTCA.............1911.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGATCTCAGCGTTCAGGTC..............2511.0010000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCGAGAAAGCCGATC............................1911.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCAGCGTTCAGGTCATACAGAT......2411.0010000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGTTCAGGTCATACA.........1811.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCAGGTCATACAGA.......1811.0010100000000
droPer2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATCGAGCGCGAGAAAGCCGATCTCAGCGTTCAGGTCATACAGATGTCCGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGATCTCAGCGTTC...................2013.003300000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGTTCAGGTCATACAGAT......2111.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCGATCTCAGCGTTCAGGTC..............2411.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGAAAGCCGATCTCAGC.......................2011.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGCGCGAGAAAGCCGATCTCA.........................2511.001010000
droAna3
TTTTATTATGGGCGGTTTGGATTGCTC-ATAGAGC---ATGCTATCTGCA--------------------------GGTTATTTAT----AGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTCTTTAT-TTTATCTATTACGAAATATCCTCTA------------ATTGTCT---AATATA---------------CAATTCCAGATCGAGCGCGAGAAAGCCGACCTCAGCGTTCAGGTCATCCAGATGTCCGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCGAGAAAGCCGACCT...........................2012.002000002
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGACCTCAGCGTTCAGGT...............2412.002000011
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGACCTCAGCGTTCAGGT...............1911.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGTTCAGGTCATCCAGA.......2011.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCCGACCTCAGC.......................1911.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCGACCTCAGCGTTCAGGTC..............2411.001010000
droBip1
TTTTATTATGGGCGGTTTGGATTGCTC-ATAGAGC---ATGCTATCTGCA--------------------------GGTTATTTAT----AGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTCCTAATATTTATCTCTTATGAAATATCCTCT-------------AATTGTCGAAAATAT----------------ATATTCCAGATCGAGCGCGAGAAAGCCGACCTCAGCGTTCAGGTCATCCAGATGTCCGASizeHit CountTotal NormTotal
No Reads
droKik1
TTTTATTATGGACCGTTTGAGTTG-TC----------------TGAGGCG--------------------------TGATATTTAT----AGGT-------TCT----TTCGATTATGAAATTTCGAATTTCATATT------TTAGA--TATGT--AAAG--ATTATGAAATAGGCTTC--AGAA----------------------------------A--TAT--------------------------------------------------TACA--AGAATTATTG-GGTCT-------------------------------------TATATATGATGAGAAAACCTTAAACT------AATCGTGGATTTCCTGT-------------------------------------------------------------T-----------ACCTTGCAGATCGAGCGCGAGAAAGCCGATCTCAGCGTTCAGGTCATTCAGATGTCCGASizeHit CountTotal NormTotal
No Reads
droRho1
TTTTATTATGGGCTGTTTGAGTAG-CC-ATAGAGC---ATAGCTAGCGCA--------------------------GGTTATTTAT----AGAT-------ATT----TTAGATTTCA-------------------------------------------------------------CAA------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCCCTAAGAGAATTTCAAGCT-----------------------------------------------------------------AAAGTT-GGTTTTTCCTTTA-----------AAATTCCAGATTGAGCGCGAGAAAGCCGATCTCAGCGTTCAGGTCATTCAGATGTCCGASizeHit CountTotal NormTotal
No Reads
dm3
TTTTATTATGGGCTGTTTGAGTAG-CC-ACAGAGC---ATGGCTAGCGCA--------------------------GGGTATTTAT----AGAT-------CCT----TCACATTATA-------------------------------------------------------------CCA------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCGCTAATGAAATCTCTTCTT-----------------------------------------------------------------AATCTCTGCTTATATTCTTC-----------AAATTTCAGATCGAGCGCGAGAAAGCCGATCTCAGCGTTCAGGTCATTCAGATGTCCGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGATCTCAGCGTTCA..................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000010000000000000000000100000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGATCTCAGCGT.....................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGATCTCAGCGTTCAGGTC..............2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCGATCTCAGCGTTCA..................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGATCTCAGCGTTCAG.................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGATCTCAGCGTTCAGGT...............2412.0020000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAGCGTTCAGGTC..............1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGATCTCAGCGTTCAG.................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGATCTCAGCGTTCAGGTCA.............2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAGCGTTCAGGTCA.............1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGATCTCAGCGTTCAGGTC..............2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATCTCAGCGTTCAGGT...............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TTTATTATGGGCTGTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCGATCTCAGCGTTCAGGTC..............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCGATCTCAGCGTTCA..................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGAGCGCGAGAAAGCC................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGAGAAAGCCGATCTCAGCGT.....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGATCTCAGCGTTCAGGTCA.............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGATCTCAGCGG.....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCAGCGTTCAGGTCATT...........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTCAGATGTCCGA1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGAGAAAGCCGATCTCAGCGTTC...................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGATCTCAGCGTTCAGGT...............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCGATCTCAGCGTTCAGGT...............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGAAAGCCGATCTCAGCGTTCA..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGATCTCAGCGTTCAGG................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCGATCTCAGCGTTCAG.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGCCGATCTCAGCGTTCAGGT...............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAGCGTTCAGGTCATTCA.........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCGATCTCAGCGTTCAGGTCA.............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGCGTTCAGGTCATTCAGAT......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCGATCTCAGCGTTCAGGT...............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGATCTCAGCGTTCAGGT...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGCCGATCTCAGCGTT....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTTTATTATGGGCTGTTTGAGTAG-CC-ACAGAGC---ATGGCTAGCGCA--------------------------GGGTATTTAT----AGAT-------CCT----TTACATTATA-------------------------------------------------------------CCA------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCCCCAATGGAATCTCGTCTT-----------------------------------------------------------------AATCTCTGCTTATATTCTTC-----------AAATTTCAGATCGAGCGCGAGAAAGCCGATCTCAGCGTTCAGGTCATTCAGATGTCCGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGATCTCAGCGTTCAGGTC..............2111.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGTTCAGGTCATTCAGAT......2111.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGATCTCAGCGTTCAGG................1911.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCGATCTCAGCGTTC...................1811.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGCGTTCAGGTCATTCAGAT......2311.00100000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGATCTCAGCGTTCA..................2111.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGATCTCAGCGTTCAGGT...............2111.00100000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGATCTCAGCGTTCAG.................2211.00100010000000000000
droSec2
TTTTATTATGGGCTGTTTGAGTAG-CC-ACAGAGC---ATGGCAAGCGCA--------------------------GGGTATTTAT----AGAT-------CCT----TTACATTATA-------------------------------------------------------------CCA------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCCCTGATGGAATCTCGTCTT-----------------------------------------------------------------AATCTCTGCTTATATTCTTC-----------AAATTTCAGATCGAGCGCGAGAAAGCCGATCTCAGCGTTCAGGTCATTCAGATGTCCGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCGATCTCAGCGTTCAGGTC..............2412.0020020
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGCCGATCTCAGCGT.....................1911.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGCCGATCTCAGCGTTC...................2111.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGATCTCAGCGTTCAGGTCA.............2311.0010010
droYak3
TTTTATTATGGCCCGTTTGAGTAG-CCACCAGAGC---ATGGCTGGCGCA--------------------------GGGTATTTAT----AGAT-------ATT----TTGGATTATA-------------------------------------------------------------CCA------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCCCCAATGGAATCTCTTC-----------------------------------------------------TAAT-CCTATGCTTAATCTCTACTTA-ATTCTTC-----------AAATTTCAGATCGAGCGCGAGAAAGCCGATCTCAGCGTTCAGGTCATTCAGATGTCCGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................TTGAGTAG-CCACCAGAGC---ATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGATCTCAGCGT.....................1811.00100001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGCCGATCTCAGCGT.....................1911.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGATCTCAGCGTTCAGGT...............2411.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGCCGATCTCAGCGTTCAGGTC..............2611.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAGCGTTCAGGTC..............1811.00100100000000
.......ATGGCCCGTTTGAGTAG-C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGATCTCAGCGTTC...................2011.00100000010000
droEre2
TTTTATTATGGGCTGTTTGAGTAT-CC-ACAGAGC---ATGGCTAGCGCA--------------------------GGGTATTTAT----AGAT-------CTT----TTAGTTTATA-------------------------------------------------------------CCA------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCCCTAATGGAAGCCTTCCCT-----------------------------------------------------------------AATCTCTGCTTGTATTCTTC-----------CAATTTCAGATCGAGCGCGAGAAAGCCGATCTCAGCGTTCAGGTCATTCAGATGTCCGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGATCTCAGCGTTCAGGT...............2111.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCGATCTCAGCGTTCA..................2011.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGATCTCAGCGT.....................1811.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAGCGTTCAGGTC..............1811.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCAGCGTTCAGGTCATTCA.........2211.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAGCCGATCTCAGCGTTCAGGTC..............2811.0010100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCGATCTCAGCGTTCA..................1911.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGATCTCAGCGTTCAG.................1911.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGATCTCAGCGTTCAGGT...............2411.0010001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCGATCTCAGCGTTCAGGTC..............2311.0010000010

Generated: 05/16/2015 at 08:26 PM