ID:

dvi_18644

 Coordinate:

scaffold_13049:6381377-6381444 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.8 -6.8 -6.8

Flybase annnotation

CDS [Dvir\Cp15-cds]; exon [dvir_GLEANR_12988:1]; CDS [Dvir\Cp15-cds]; exon [dvir_GLEANR_12988:2]; intron [Dvir\Cp15-in]

No Repeatable elements found

Sense Strand Reads

--------------------------------------############--------------------------------------------------------------------##################################################
TGATTGATTAACCTAACCAACAAAACTAACTGTTCAACATGAAGTTCCTGGTAAGCAATCCCTACAGCTGGACTTGGACATATGGATGGCTGACTAATCCTGTTTCCTAAAATCATAGATTGCCTTCGCTGTCCTCGCTCTGGTCGCCTGCATCAATGCCAATCCCTA
********************************************************************.......(((.(((.((((.........))))))).)))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 SRR060684
140x9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 M047
female body
 SRR060677
Argx9_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060658
140_ovaries_total
 SRR060656
9x160_ovaries_total
 SRR060660
Argentina_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR060669
160x9_females_carcasses_total
 SRR060673
9_ovaries_total
 SRR1106729
mixed whole adult body
 V053
head
..............................TGTTCAACATGAAGTTCCTGAT.................................................................................................................... 22 1 1 51.00 51 45 3 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CTTCGCTGTCCTCGCTCTGGTCGCCT................... 26 0 1 38.00 38 36 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CTTCGCTGTCCTCGCTCTGGTCGC..................... 24 0 1 33.00 33 30 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGCTGTCCTCGCTCTGGTCGCCTGC................. 25 0 1 31.00 31 31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GTTCAACATGAAGTTCCTGAT.................................................................................................................... 21 1 1 28.00 28 17 4 0 2 2 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................CTTCGCTGTCCTCGCTCTG.......................... 19 0 1 27.00 27 1 8 4 1 5 1 0 2 0 0 1 0 0 2 2 0 0 0 0 0 0 0
...........................................................................................................................CTTCGCTGTCCTCGCTCTGGTCGCCTG.................. 27 0 1 26.00 26 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CTTCGCTGTCCTCGCTCTGGT........................ 21 0 1 24.00 24 5 5 1 2 3 0 1 1 0 1 1 0 0 2 0 1 0 1 0 0 0 0
..............................................................................................................................CGCTGTCCTCGCTCTGGT........................ 18 0 1 23.00 23 2 4 3 3 2 1 1 1 0 0 1 0 1 0 2 2 0 0 0 0 0 0
..............................................................................................................................CGCTGTCCTCGCTCTGGTC....................... 19 0 1 23.00 23 2 12 2 2 3 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................CGCTGTCCTCGCTCTGGTCGCCTG.................. 24 0 1 22.00 22 21 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGCTGTCCTCGCTCTGGTCGCCTGCATC.............. 28 0 1 21.00 21 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
TGATTGATTAACCTAACC...................................................................................................................................................... 18 0 1 21.00 21 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CTTCGCTGTCCTCGCTCTGGTCGCC.................... 25 0 1 21.00 21 20 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CTTCGCTGTCCTCGCTCTGGTC....................... 22 0 1 20.00 20 6 7 1 1 1 1 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGCTGTCCTCGCTCTGGTCGC..................... 21 0 1 20.00 20 19 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................AACTGTTCAACATGAAGTTCCTGAT.................................................................................................................... 25 1 1 19.00 19 10 4 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGCTGTCCTCGCTCTGGTCGCC.................... 22 0 1 19.00 19 12 1 0 0 0 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CTTCGCTGTCCTCGCTCTGGTCGCCTGC................. 28 0 1 19.00 19 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCGCTGTCCTCGCTCTGGTCGCCTG.................. 25 0 1 17.00 17 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGCTGTCCTCGCTCTGGTCGCCTGCAT............... 27 0 1 16.00 16 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CTCGCTCTGGTCGCCTGCATCAA............ 23 0 1 14.00 14 0 0 0 1 1 0 6 0 1 5 0 0 0 0 0 0 0 0 0 0 0 0
........................ACTAACTGTTCAACATGAAGTTCCTGAT.................................................................................................................... 28 1 1 14.00 14 12 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTGTCCTCGCTCTGGTCGCCTGC................. 23 0 1 13.00 13 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCGCTGTCCTCGCTCTGGTC....................... 20 0 1 13.00 13 1 6 0 1 1 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................GTCCTCGCTCTGGTCGCCTGC................. 21 0 1 13.00 13 11 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GCTGTCCTCGCTCTGGTCGCCTGC................. 24 0 1 13.00 13 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CTAACTGTTCAACATGAAGTTCCTGAT.................................................................................................................... 27 1 1 12.00 12 9 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................ATGTTCAACATGAAGTTCCTGATT................................................................................................................... 24 3 1 12.00 12 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGTTCAACATGAAGTTCCT....................................................................................................................... 19 0 1 11.00 11 8 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTGTCCTCGCTCTGGTCGCCTGCA................ 24 0 1 11.00 11 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TAACTGTTCAACATGAAGTTCCTGAT.................................................................................................................... 26 1 1 10.00 10 5 3 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.GATTGATTAACCTAACC...................................................................................................................................................... 17 0 1 10.00 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GCTGTCCTCGCTCTGGTCGCCTGCA................ 25 0 1 10.00 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GATTGCCTTCGCTGTCCTCGCTCTGGT........................ 27 0 1 10.00 10 9 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................AACTGTTCAACATGAAGTTCCT....................................................................................................................... 22 0 1 10.00 10 0 4 3 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CTCGCTCTGGTCGCCTGCATC.............. 21 0 1 9.00 9 3 2 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TTCGCTGTCCTCGCTCTGGT........................ 20 0 1 9.00 9 0 3 0 2 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CTCGCTCTGGTCGCCTGCATCAAT........... 24 0 1 9.00 9 1 2 0 2 0 0 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................ATGTTCAACATGAAGTTCCTGA..................................................................................................................... 22 2 1 9.00 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................ACTGTTCAACATGAAGTTCCTGAT.................................................................................................................... 24 1 1 9.00 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CTGGTCGCCTGCATCAATGCCAAT..... 24 0 1 9.00 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CTTCGCTGTCCTCGCTCTGGTCGCCTGCAT............... 30 0 1 8.00 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TGCCTTCGCTGTCCTCGCTCT........................... 21 0 1 8.00 8 0 3 1 0 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GCTGTCCTCGCTCTGGTC....................... 18 0 1 8.00 8 0 2 0 2 2 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................CTCGCTCTGGTCGCCTGC................. 18 0 1 8.00 8 3 2 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................GATTGCCTTCGCTGTCCTCGCTC............................ 23 0 1 8.00 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TTCGCTGTCCTCGCTCTGGTCGCCT................... 25 0 1 7.00 7 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GCTGTCCTCGCTCTGGTCGCC.................... 21 0 1 7.00 7 6 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TTCGCTGTCCTCGCTCTGGTCGC..................... 23 0 1 7.00 7 5 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................ATGTTCAACATGAAGTTCCTGAT.................................................................................................................... 23 2 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CCTTCGCTGTCCTCGCTCTGGTCGC..................... 25 0 1 7.00 7 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGCTGTCCTCGCTCTGGTCGCCT................... 23 0 1 7.00 7 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................GTTCAACATGAAGTTCCTGATT................................................................................................................... 22 2 1 7.00 7 3 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CTGGTCGCCTGCATCAATGCCAATC.... 25 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GATTGCCTTCGCTGTCCTCGCTCT........................... 24 0 1 7.00 7 5 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GCTGTCCTCGCTCTGGTCGCCTGCATC.............. 27 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................ACTGTTCAACATGAAGTTCCTGATT................................................................................................................... 25 2 1 7.00 7 5 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGTCCTCGCTCTGGTCGCCTGCA................ 23 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CTGGTCGCCTGCATCAATGCCAATCC... 26 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GATTGCCTTCGCTGTCCTCGCT............................. 22 0 1 7.00 7 3 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................TTCGCTGTCCTCGCTCTGGTC....................... 21 0 1 6.00 6 0 2 1 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0
.............................CTGTTCAACATGAAGTTCCTGAT.................................................................................................................... 23 1 1 6.00 6 5 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TTCGCTGTCCTCGCTCTGGTCGCCTGC................. 27 0 1 6.00 6 4 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTGTCCTCGCTCTGGTCGCCTGCATC.............. 26 0 1 6.00 6 5 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TGCCTTCGCTGTCCTCGCTCTGGT........................ 24 0 1 6.00 6 4 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCGCTGTCCTCGCTCTGGTCGCCTGC................. 26 0 1 6.00 6 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................ACTGTTCAACATGAAGTTCCT....................................................................................................................... 21 0 1 6.00 6 0 1 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TAACTGTTCAACATGAAGTTCCT....................................................................................................................... 23 0 1 6.00 6 2 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................GCTGTCCTCGCTCTGGTCGC..................... 20 0 1 6.00 6 1 3 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................ACTAACTGTTCAACATGAAGTTCCT....................................................................................................................... 25 0 1 6.00 6 4 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................ATTGCCTTCGCTGTCCTCGCTCTGGTC....................... 27 0 1 6.00 6 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CCTTCGCTGTCCTCGCTCTGGTCGCCTGCA................ 30 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GCTGTCCTCGCTCTGGTCGCCTGCAT............... 26 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTGCCTTCGCTGTCCTCGCTCTGGT........................ 25 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TGCCTTCGCTGTCCTCGCTCTG.......................... 22 0 1 6.00 6 0 4 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CTAACTGTTCAACATGAAGTTCCT....................................................................................................................... 24 0 1 6.00 6 1 2 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................TGTCCTCGCTCTGGTCGC..................... 18 0 1 5.00 5 4 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGTTCAACATGAAGTTCCTG...................................................................................................................... 20 0 1 5.00 5 3 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CTAACTGTTCAACATGAAGTTCCTG...................................................................................................................... 25 0 1 5.00 5 2 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCGCTGTCCTCGCTCTGGT........................ 19 0 1 5.00 5 0 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................CTGATTGCCTTCGCTGTCCTCGCTCTGGT........................ 29 2 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TTCGCTGTCCTCGCTCTGGTCGCC.................... 24 0 1 5.00 5 4 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................TTCGCTGTCCTCGCTCTG.......................... 18 0 1 5.00 5 0 2 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCGCTGTCCTCGCTCTGGTCGCCTGCAT............... 28 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............CTAACCAACAAAACTAACTGTTC..................................................................................................................................... 23 0 1 5.00 5 2 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGTCCTCGCTCTGGTCGCC.................... 19 0 1 5.00 5 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................GTCCTCGCTCTGGTCGCCTGCATCAA............ 26 0 1 5.00 5 3 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TGCCTTCGCTGTCCTCGCT............................. 19 0 1 5.00 5 0 1 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GCCTTCGCTGTCCTCGCTCTGGTCGCC.................... 27 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GTTCAACATGAAGTTCCTG...................................................................................................................... 19 0 1 5.00 5 2 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................CTGCATCAATGCCAATCCCT. 20 0 1 5.00 5 0 2 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTGTCCTCGCTCTGGTCGC..................... 19 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GCCTTCGCTGTCCTCGCTCTGGTC....................... 24 0 1 5.00 5 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGTTCAACATGAAGTTCCTGATT................................................................................................................... 23 2 1 5.00 5 3 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................AACTGTTCAACATGAAGTTCCTGATT................................................................................................................... 26 2 1 5.00 5 3 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GATTGCCTTCGCTGTCCTC................................ 19 0 1 5.00 5 4 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GTCCTCGCTCTGGTCGCCTGCATC.............. 24 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGTCCTCGCTCTGGTCGCCTGC................. 22 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................ATTGCCTTCGCTGTCCTCGCT............................. 21 0 1 5.00 5 4 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GATTAACCTAACCAACAAAACT............................................................................................................................................. 22 0 1 5.00 5 0 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CCTTCGCTGTCCTCGCTCTG.......................... 20 0 1 5.00 5 0 2 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
TGATTGATTAACCTAAC....................................................................................................................................................... 17 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCTGATTGCCTTCGCTGTCCTCGCTCTGGT........................ 30 3 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTGTCCTCGCTCTGGTCGCCTGCATCAA............ 28 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....TGATTAACCTAACCAACAAAACT............................................................................................................................................. 23 0 1 5.00 5 0 0 1 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................TCAACATGAAGTTCCTGAT.................................................................................................................... 19 1 2 4.50 9 0 4 1 0 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................CTGTTCAACATGAAGTTCCT....................................................................................................................... 20 0 1 4.00 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................GCCTTCGCTGTCCTCGCTCT........................... 20 0 1 4.00 4 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CTTCGCTGTCCTCGCTCT........................... 18 0 1 4.00 4 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CTGGTCGCCTGCATCAATGCCAATCCC.. 27 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCGCTGTCCTCGCTCTGGTCGCCTGCA................ 27 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CTCGCTCTGGTCGCCTG.................. 17 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................CAACAAAACTAACTGTTCAAC.................................................................................................................................. 21 0 1 4.00 4 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCGCTGTCCTCGCTCTGGTCGCC.................... 23 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GCTGTCCTCGCTCTGGTCGCCTG.................. 23 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AACCAACAAAACTAACTGT....................................................................................................................................... 19 0 1 4.00 4 0 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GCTCTGGTCGCCTGCATCAATGCCAATC.... 28 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTGTCCTCGCTCTGGTCGCCTGCAT............... 25 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AACTAACTGTTCAACATGAAGT........................................................................................................................... 22 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CCTCGCTCTGGTCGCCTGCAT............... 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTGTCCTCGCTCTGGTCGCCT................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................ATGTTCAACATGAAGTTCC........................................................................................................................ 19 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AGTTCAACATGAAGTTCCTG...................................................................................................................... 20 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GCTGTCCTCGCTCTGGTCGCCTGA................. 24 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TTGATTAACCTAACC...................................................................................................................................................... 15 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TCCTCGCTCTGGTCGCCTGC................. 20 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTGCCTTCGCTGTCCTCGCTC............................ 21 0 1 4.00 4 0 1 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GATTGCCTTCGCTGTCCTCGCTCTGGTC....................... 28 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................ATGTTCAACATGAAGTTCCTG...................................................................................................................... 21 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGCTGTCCTCGCTCTGGTCG...................... 20 0 1 4.00 4 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................ACGCTGTCCTCGCTCTGGTCGCCTGC................. 26 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GCTGTCCTCGCTCTGGTCGCCT................... 22 0 1 3.00 3 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..ATTGATTAACCTAACCAACAA................................................................................................................................................. 21 0 1 3.00 3 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTGTCCTCGCTCTGGTCGCC.................... 20 0 1 3.00 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CTAACTGTTCAACATGACGTTCCTGAT.................................................................................................................... 27 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................CGCCTGCATCAATGCCAATCCCT. 23 0 1 3.00 3 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CTTCGCTGTCCTCGCTCTGGTCG...................... 23 0 1 3.00 3 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AGTTCAACATGAAGTTCCTGATT................................................................................................................... 23 3 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....TGATTAACCTAACCAACAAAACTAACT......................................................................................................................................... 27 0 1 3.00 3 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CCTCGCTCTGGTCGCCTGCATCA............. 23 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TGGTCGCCTGCATCAATGCCAAT..... 23 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..ATTGATTAACCTAACC...................................................................................................................................................... 16 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCGCTGTCCTCGCTCTGGTCGCCT................... 24 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GCCTTCGCTGTCCTCGCTCTG.......................... 21 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................CAACAAAACTAACTGTTCAACATG............................................................................................................................... 24 0 1 3.00 3 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GTTCAACATGAAGTTCCTGA..................................................................................................................... 20 1 1 3.00 3 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CTCGCTCTGGTCGCCTGCAT............... 20 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ACTTCGCTGTCCTCGCTCTGGTCGCCTGC................. 29 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GCTGTCCTCGCTCTGGTCGCCTGCATCAAT........... 30 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CGCTCTGGTCGCCTGC................. 16 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGCTGTCCTCGCTGTGGTCGCCTGC................. 25 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................CGCCTGCATCAATGCCAATC.... 20 0 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TCGCTCTGGTCGCCTGCATCAA............ 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................ACTGTTCAACATGAAGTTCCTGGTAA.................................................................................................................. 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....TGATTAACCTAACCAACAAAACTAACTG........................................................................................................................................ 28 0 1 3.00 3 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TGCCTTCGCTGTCCTCGCTCTGGTC....................... 25 0 1 3.00 3 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AACTAACTGTTCAACATGAAGTTCCTGAT.................................................................................................................... 29 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TGCCTTCGCTGTCCTCGCTC............................ 20 0 1 3.00 3 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TGATTGCCTTCGCTGTCCTCGCTC............................ 24 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GATTGATTAACCTAACCAACAAAA............................................................................................................................................... 24 0 1 3.00 3 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CGCTCTGGTCGCCTGCATCAATGCCA....... 26 0 1 3.00 3 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................ACTAACTGTTCAACATGAAGTTCCTG...................................................................................................................... 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AGTTCAACATGAAGTTCCTGAT.................................................................................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GATTGATTAACCTAACCAAC................................................................................................................................................... 20 0 1 3.00 3 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTGCCTTCGCTGTCCTCTCTCTGGTCG...................... 27 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..ATTGATTAACCTAACCAAC................................................................................................................................................... 19 0 1 3.00 3 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....TGATTAACCTAACCAACAAAA............................................................................................................................................... 21 0 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GCCTTCGCTGTCCTCGCT............................. 18 0 1 3.00 3 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCGCTGTCCTCGCTCTGGTCG...................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
TGATTGATTAACCTAACCAAC................................................................................................................................................... 21 0 1 3.00 3 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGTCCTCGCTCTGGTCGCCT................... 20 0 1 3.00 3 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........AACCTAACCAACAAAACTAACTGT....................................................................................................................................... 24 0 1 3.00 3 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGCTGTCCTCGCTCTGGTCGCCTGCA................ 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CCTCGCTCTGGTCGCCTGCATC.............. 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TGCCTTCGCTGTCCTCGCTCTGGTCGC..................... 27 0 1 3.00 3 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................AGTTCAACATGAAGTTCCTGGTA................................................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GATTGCCTTCGCTGTCCTCGCTCTGGTCGCC.................... 31 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGTTCAACATGAAGTTCCTGA..................................................................................................................... 21 1 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TTGATTAACCTAACCAACAA................................................................................................................................................. 20 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GTCCTCGCTCTGGGCGCCTGC................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GATTAACCTAACCAACAAAA............................................................................................................................................... 20 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ACTTCGCTGTCCTCGCT............................. 17 1 3 2.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................AGCTCTGGTCGCCTGCATCAATGCCAATCCCT. 32 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AGTTCAACATGAAGTTCCTGG..................................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CCTTCGCTGTCCTCGCTCT........................... 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GCTGTCCTCGCTCGGGTCGCCTGCATC.............. 27 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................ATAACTGTTCAACATGAAGTTCCTG...................................................................................................................... 25 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CTAACTGTTCAACGTGAAGTTCCTGAT.................................................................................................................... 27 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TAACTGTTCAACATGAAGTT.......................................................................................................................... 20 0 1 2.00 2 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................CTGTTCAACATGAAGTTCCTGATT................................................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGTTCAACATGAAGTTCCTGAC.................................................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGTCCTCGCTCTGGTCGCCTGCATCAA............ 27 0 1 2.00 2 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................AACAAAACTAACTGTTCAACATGAAGT........................................................................................................................... 27 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGTTCAAGATGAAGTTCCTGAT.................................................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CTGGTCGCCTGCATCACTGCCAAT..... 24 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TTGATTAACCTAACCAAC................................................................................................................................................... 18 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGCTGTCGTCGCTCTGGTCGCCTGCATC.............. 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......ATTAACCTAACCAACAAAACTAACTGT....................................................................................................................................... 27 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ACTGGTCGCCTGCATCAATGCCAATCCC.. 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................ACTAACTGTTCAACATGCAGTTCCTGAT.................................................................................................................... 28 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TAACTGTTCAACATGAAGTTCCTGATTG.................................................................................................................. 28 3 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TGCATCAATGCCAATCCCT. 19 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTGCCTTCGCTGTCCTCGCTCTGGTCGCCT................... 30 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CTTCGCTGTCCTCGCTCTGGTCGCCTGCA................ 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGTCCTCGCTCTGGTCGCCTGCAT............... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GCCTGCATCAATGCCAATCCC.. 21 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................ACTAACTGTTCAACATGAAGT........................................................................................................................... 21 0 1 2.00 2 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GATTAACCTAACCAACAAAACTAACTGT....................................................................................................................................... 28 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........TAACCTAACCAACAAAACT............................................................................................................................................. 19 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GGTCGCCTGCATCAATGCCAATCCCT. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
TGATTGATTAACCTAACCAA.................................................................................................................................................... 20 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGCTGTCCTCGCTGTGGTCGCCTG.................. 24 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGCTGTCCTGGCTCTGGTCGCCTGCAT............... 27 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TCCTCGCTCTGGTCGCCTGCAT............... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GATTGATTAACCTAACCAACAAAAC.............................................................................................................................................. 25 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................CTAACTGTTCAACATGAAGTT.......................................................................................................................... 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TGCCTTCGCTGTCCTCGC.............................. 18 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AGTTCAACATGAAGTTCCTGA..................................................................................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGTCCTCGCTCTGGTCGCCTGCAA............... 24 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................CTGTTCAACATGAAGTTCCTG...................................................................................................................... 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CTAACTGTTCAACATGAAGTTC......................................................................................................................... 22 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......TTAACCTAACCAACAAAACT............................................................................................................................................. 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CCTCGCTCTGGTCGCCTGCATCAATGCC........ 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CGCTCTGGTCGCCTGCATCAAT........... 22 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CTCGCTCTGGTCGCCTGCATCA............. 22 0 1 2.00 2 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CCTGCATCAATGCCAATCCC.. 20 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............CTAACCAACAAAACTAACTGTTCAA................................................................................................................................... 25 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GCTGTCCTAGCTCTGGTCGCCTGCA................ 25 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GTTCAACATGAAGTTACTGAT.................................................................................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGGACTTGGACATATGGATGGCTGA........................................................................... 25 0 1 2.00 2 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CTCTGGTCGCCTGCATC.............. 17 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TCGCTCTGGTCGCCTGCATCAATGCCAATC.... 30 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................ACTGTTCAACATGAAGTTCCTGA..................................................................................................................... 23 1 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CCTCGCTCTGGTCGCCTGCATCAA............ 24 0 1 2.00 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................AACTGTTCAACATGAAGTTCCTGATTG.................................................................................................................. 27 3 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CTAACTGTTCAACATGAAGT........................................................................................................................... 20 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................ACTAACTGTTCAACATGAAGTTCCTGATT................................................................................................................... 29 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................AACTTTTCAACATGAAGTTCCTGAT.................................................................................................................... 25 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGCTGTCCTCGCTCTGGTCGCCTGA................. 25 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........CCTAACCAACAAAACTAACTGTT...................................................................................................................................... 23 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGCTGTCCTCGCTGTGGTCGCCTGCATC.............. 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GATTGATTAACCTAAC....................................................................................................................................................... 16 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CTAACTGTTCAACATGCAGTTCCTGAT.................................................................................................................... 27 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TCTGGTCGCCTGCATCAATGCCAATCC... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TTGATTAACCTAACCAACAAAACTAACT......................................................................................................................................... 28 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GTCGCCTGCATCAATGCC........ 18 0 1 2.00 2 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TGGTCGCCTGCATCAATGCCAATCCCT. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGCTGTCCTCGCTCTGGGCGCCTGCATC.............. 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................AACTGTTCAACATGAAGTTCCTG...................................................................................................................... 23 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GCCTGCATCAATGCCAATCCCT. 22 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................AACATGAAGTTCCTGGTA................................................................................................................... 18 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TAACTGTTCAACATGAAGTTCCTGATT................................................................................................................... 27 2 1 2.00 2 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTGCCTTCGCTGTCCTCGCT............................. 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGTCCTCGCTCTGGTCGCCTG.................. 21 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GTTCAACATGAAGTTCCT....................................................................................................................... 18 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GTCGCCTGCATCAATGCCAATCCCT. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CCTCGCTCTGGTCGCCTGCATCAAT........... 25 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................ACTGTTCAACATGGAGTTCCTGATT................................................................................................................... 25 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......TTAACCTAACCAACAAAACTAACTGTT...................................................................................................................................... 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................AGCTCTGGTCGCCTGCATCAATGCCAATCC... 30 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TTGATTAACCTAACCAACAAAACT............................................................................................................................................. 24 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................AAAACTAACTGTTCAACATGAAGTTCCTGAT.................................................................................................................... 31 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TAACTGTTCAACATGAAGT........................................................................................................................... 19 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GTTCAACATGAAGTTCCTGATGC.................................................................................................................. 23 3 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................ATCCTTTGCTGTCCTCGCTCTGGTCGCCTGC................. 31 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGCTGTTCTCGCTCTGGTC....................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................AACTTTTAAACATGAAGTTCCTGAT.................................................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................AGTACTCGCTCTGGTCGCCTGCAT............... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CCTGCATCAATGCCAATCCCT. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................ACTGTTCAACATGAAGTTCCTGATTG.................................................................................................................. 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GATTGCCTTCGCTGTC................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TTCGCTGTCCTCGCTCTGGTCGCCTG.................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GCTGTCCTCGCTCAGGTCGCCTGCA................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GTCCTCGCTCTGGACGCCTGCA................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TCCTCGCTCTGGTCGC..................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CGCTCTGGTAGCCTGCATCAATGCCAATC.... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GATTGCCTTAGCTGTCCTCGCTCTGGT........................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GCTCTGGTCGCCTGCATCA............. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................ACAAAACTAACTGTTCAAC.................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CTTCGCTGTCCTTGCTCTG.......................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GCCTTCGCTATCCTCGCTCTGGTCGCC.................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GTCCTCGCTCTGGTCGCCTGCATCAATGCC........ 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................CCTGTTTCCTAAAATCATAG.................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TCTGGTCGCCTGCATCAATGCCAATC.... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GTTCAACATGAAGTTCCTGCT.................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CTGATTGCCTTCGCTGTCCTCGCTCTGG......................... 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGTTCAACATGAAGTTCCTC...................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGCTGTCGTCGCTCTGGTCGCCT................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TGATTGCCTTCGCTGTCCTCGCTCT........................... 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CGCTCTGGTCGCCTGCATCAATG.......... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CGCTCTGGTCGCCTGCATCAATGCCAA...... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GCCTTAGCTGTCCTCGCTCTGGTCGCC.................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TGCCTTCCCTGTCCTCGCTCTGGTCGCCTGC................. 31 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................ATGTTCAACATGAAGTTCCTGG..................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CTTCGATGTCCTCGCTCTGGTCGCCT................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CAAAACTAACTGTTCAACATGAAGTTCCT....................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TTCGCTGTCCTCGGTCTGGTCGCCTGCA................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TAACTGTTCAACATGAAG............................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................ACTGTTCAACATGAAGTTCCTGG..................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................CTGTTCAACATGAGGTTCCTGATT................................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACTAACTAATTGGATTGGTTGTTTTGATTGACAAGTTGTACTTCAAGGACCATTCGTTAGGGATGTCGACCTGAACCTGTATACCTACCGACTGATTAGGACAAAGGATTTTAGTATCTAACGGAAGCGACAGGAGCGAGACCAGCGGACGTAGTTACGGTTAGGGAT
**************************************************.......(((.(((.((((.........))))))).)))...........******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060658
140_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060677
Argx9_ovaries_total
 M047
female body
 SRR060656
9x160_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060675
140x9_ovaries_total
 V116
male body		 SRR060662
9x160_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR060666
160_males_carcasses_total
 SRR060663
160_0-2h_embryos_total
 SRR1106729
mixed whole adult body
................................................................................................................................................GCGGACGTAGTTACGGTTAGG... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................GGAAGCGACAGGAGCGAGACCA........................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................GACCTGAACCTGTATACCT.................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................CCTGTATACCTACCGACTGAT........................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................ATCTAACGGAAGCGACAGGAG................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................CGGAAGCGACAGGAGCGAGA........................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................AGGGATGTCGACCTGAACCTGT........................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................GCGAGACCAGCGGACGTAGTT............ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................CAAGGACCATTCGTTAGGGAT........................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................GATGTCGACCTGAACCTGTAT...................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................GGCCAGCGGGCGTAGTTA........... 18 2 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................AGGGAAGTCGGCCTGAAC............................................................................................ 18 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................TCAAAGACCATTCGTAAGG........................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................GGGAAGTCGGCCTGAACC........................................................................................... 18 2 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................CCAATCGTTAGGGATGGCC.................................................................................................... 19 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................AAGGGAAGTCGGCCTGAACC........................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................GATTAGGACAAACGA............................................................ 15 1 17 0.12 2 0 0 0 0 0 0 0 0 0 0 0 0 2
.............................................................................................GATTAGGACAAACGATTGG........................................................ 19 3 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................CTATCGAGTGATTAGGACT................................................................. 19 3 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................AGGGGAGTCGGCCTGAACC........................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................ATAGATTAGGACAAACGATT.......................................................... 20 3 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:6381327-6381494 + dvi_18644 TGATTGATTAACCT--AACCAACAAAACTA--ACT-GTTCAACATGAAGTTCCTGGTAAGCAATCCCTACAGCTG-G---A----------CT--TGGACATATGGA-----TGGCTG-ACTAATCCTGT----TTCCTA------AAATCATAGATTGCCTTCGCTGTCCTCGCTCTGGTCGCCTGCATCAATGCCAATCCCT---A
droMoj3 scaffold_6680:4702294-4702470 + TGATTGATTTCTAC--AACTAGCAAAGCCA--AATAACTCAACATGAAGTTCCTGGTAAGTGATCCT-TC-ACCAGTACCA----------GTGCTCTAG-----ACCCAACCAGCTG-ACTAATCCTTGACCTGTTTCA------TTTCATCAGATTGCATTCGCTCTGTGCGCTCTGGCTGCCTGCATCAATGCCAATCCCT---A
droGri2 scaffold_15110:6359709-6359881 - TGATTGATTACCAC--AACCAACAAAACTA--AAT-ATTCAACATGAAGTTCCTGGTAAGTAATCCT-------GGCA-CT----------AT--TCACT-----GCTTG-ACAGGCATACTAATCCTGTGGGTTTTTATTTTGT-TACTTGCAGATTGCTTTTGTCGCCATCGCCTTCTTCGCCTGCGTTAGCGCTGGTGGAT---A
droWil2 scf2_1100000004511:8139988-8140166 - TGATTGATTACTAC--AACCAACAAAACTTAAAAAAATTCAATATGAAATACCTGGTAAGTAGTAA--------AGAC-TCTCAAGCGTCTCG--AAAAG-----GACTT-GCA------TTAATCCTT-GGATCCTTAATTT---CTGTTACAGTTCGTTTGCATCAGCTTGGCCCTCTTCGCCTACATCAGCGCTAACCCAGCTTA
dp5 XR_group8:8869627-8869792 - TGATTGATTATCCCACAACCAACAAAACTA--AGC-ATTCACCATGAAGTACCTGGTAAGTAGTCCT-GC----AGAC-CC----------CTGCTCAAG-----GA----TCAGCCA-GCTAATCCTCC-------TCCT------CCCCACAGTTCGTCTGCGTCAGCCTGGCCCTCTTCGCCTACATCAACGCTAGCCCGGTGTA
droPer2 scaffold_50:336507-336672 + TGATTGATTATCCCACAACCAACAAAACTA--AGC-ATTCACCATGAAGTACCTGGTAAGTAGTCCT-GC----AGAC-CC----------CTGCTCAAG-----GA----TCAGCCA-GCTAATCCTCC-------TCCT------CCCCACAGTTCGTCTGCATCAGCCTGGCCCTCTTCGCCTACATCAACGCTAGCCCGGTGTA
droAna3 scaffold_13337:7918693-7918856 - TGATTGATTTGTCTA-----------ACTA--AGC-ACTAACCATGAAGTACCTGGTAAGTTGTTA-----GC-AAGC-CT----------CG----ACTCCCAGGA-----CAGCCCAGCTTATCCTTTGGATTTCTCCTTTTC-TCTCCTTAGTTCGTCTGCGTCAGCCTCGCCCTCTTTGCCTACATCAACGCCAGCCCCT---A
droBip1 scf7180000396541:75070-75226 - TGATTGATTTGTCTA-----------ACTA--AGC-ACTAACCATGAAGTACCTGGTAAGTTGTTA-----GCAA-G---C----------CT--TGACCCCCAGGA-----CAGCCCGACTTATCCTT-GGATTTCTCTT-------TCCTTAGTTCGTTTGCGTCAGCCTTGCCCTCTTCGCCTACATCAACGCCAGCCCCT---A
droKik1 scf7180000302474:245509-245681 - TGATTGATTACCCCA-AACCAACAAAACTA--ACTAATTCACCATGAAGTACCTGGTAAGTTATAAG-------CAAC-TA----------CC--AAAGG-----AAGTG-GCAGCCA-GCTAATCCTCCGAATGTCCTCCCGC--TATCCTTAGATCATCTGCGTCTCTCTGGCTCTCTTCGCCTATATCAACGCCAGCCCGGT---
droRho1 scf7180000757772:4081-4105 + TGATTGATTACCC-A-AACCAACAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3L:8721588-8721759 + TGATTGATTACCCCA-AACCAACAAAACTA--AGC-ACTCACCATGAAGTACCTGGTAAGTTGTGGT-------AGTC-CC----------CG--TGAAG-----GAGTG-GCAGCCA-ACTGATCCTCCGGATTTCCCCTTTT--CACCTTCAGATTGTCTGCGTTACCCTGGCCCTTTTCGCCTACATCAACGCCAGCCCAGC---
droSim2 3l:8511103-8511274 + TGATTGATTACCCCA-AACCAACAAAACTA--AGC-ACTCACCATGAAGTACCTGGTAAGTTGTGGT-------AGTC-CC----------CT--TGAAG-----GAGTG-GCAGCCA-TCTGATCCTCCGTATTTCCCCTTTC--CACCTTCAGATCGCCTGTGTTACCCTGGCCCTGTTCGCCTACATCAACGCCAGCCCAGC---
droSec2 scaffold_0:999426-999600 + TGATTGATTACCCCA-AACCAACAAAACTA--AGC-ACTCACCATGAAGTACCTGGTAAGTTGTGGT-------AGTC-CC----------CT--TGAAG-----GAGTG-GCAGCCA-TCTGATCCTCCGCATTTCCCCTTCC--CACCTTCAGATCGCCTGTGTTACCCTGGCCCTGTTCGCCTACATCAACGCCAGCCCAGTGTA
droYak3 3L:3188726-3188899 - TGATTGATTACCCCA-AACCAACAAAACTA--AGC-ACTCACCATGAAGTACCTGGTAAGTTGTGGT-------AGTC-CC----------CA--AAAAG-----GAGTG-GCAGCCA-TCTGATCCTCCGGATTTCCCCTTTTCCCACCTTCAGATCGCCTGTGTTACCCTGGCCCTGTTCGCCTACATCAACGCCAGCCCAGC---
droEre2 scaffold_4784:5321017-5321188 - TGATTGATTAACCCA-AACCAACAAAACTA--AGC-ACTCACCATGAAGTACCTGGTAAGTTGTGCG-------AGTC-CG----------CA--GAAAG-----GAGTG-GCAGCCA-TCTAATCCTCCGGTTTCCCCCTCTC--CACCATCAGATCGTCTGTGTTACCCTGGCCCTGTTCGCCTACATCAACGCCAGCCCAGT---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGATTGATTAACCT--AACCAACAAAACTA--ACT-GTTCAACATGAAGTTCCTGGTAAGCAATCCCTACAGCTG-G---A----------CT--TGGACATATGGA-----TGGCTG-ACTAATCCTGT----TTCCTA------AAATCATAGATTGCCTTCGCTGTCCTCGCTCTGGTCGCCTGCATCAATGCCAATCCCT---ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................CTTCGCTGTCCTCGCTCTGGTCGCCT......................26138.00380000000000000000000000000000000000200000000000000000000000000036
................................................................................................................................................................CTTCGCTGTCCTCGCTCTGGTCGC........................24133.00330010000000000000000000000000000010100000000000000000000000000030
...................................................................................................................................................................CGCTGTCCTCGCTCTGGTCGCCTGC....................25131.00310000000000000000000000000000000000000000000000000000000000000031
................................................................................................................................................................CTTCGCTGTCCTCGCTCTG.............................19127.0027001000202001020000000000000000001084050000000000000000000000001
................................................................................................................................................................CTTCGCTGTCCTCGCTCTGGTCGCCTG.....................27126.00260000000000000000000000000000000000000000000000000000000000000026
................................................................................................................................................................CTTCGCTGTCCTCGCTCTGGT...........................21124.0024000000002011010000000000100100002051031000000000000000000000005
...................................................................................................................................................................CGCTGTCCTCGCTCTGGT...........................18123.0023001000200021110000000000000100003043020000000000000000000000002
...................................................................................................................................................................CGCTGTCCTCGCTCTGGTC..........................19123.00230010000010000000000000000000000020122030000000000000000000000002
...................................................................................................................................................................CGCTGTCCTCGCTCTGGTCGCCTG.....................24122.00220010000000000000000000000000000000000000000000000000000000000021
...................................................................................................................................................................CGCTGTCCTCGCTCTGGTCGCCTGCATC.................28121.00210000000000000000000000000000000000000000000000000000000000000021
TGATTGATTAACCT--AACC............................................................................................................................................................................................18121.00210000000000000000000000000000000000000000000000000000000000000021
................................................................................................................................................................CTTCGCTGTCCTCGCTCTGGTCGCC.......................25121.00210000000000000000000000000000000000010000000000000000000000000020
................................................................................................................................................................CTTCGCTGTCCTCGCTCTGGTC..........................22120.0020001000000000120000000000000000001071010000000000000000000000006
...................................................................................................................................................................CGCTGTCCTCGCTCTGGTCGC........................21120.00200000000000000000000000000100000000000000000000000000000000000019
...................................................................................................................................................................CGCTGTCCTCGCTCTGGTCGCC.......................22119.00190040000000000000000000000002000000100000000000000000000000000012
................................................................................................................................................................CTTCGCTGTCCTCGCTCTGGTCGCCTGC....................28119.00190000000000000000000000000000000000000000000000000000000000000019
..................................................................................................................................................................TCGCTGTCCTCGCTCTGGTCGCCTG.....................25117.00170000000000000000000000000000000000000000000000000000000000000017
...................................................................................................................................................................CGCTGTCCTCGCTCTGGTCGCCTGCAT..................27116.00160000000000000000000000000000000000000000000000000000000000000016
..........................................................................................................................................................................CTCGCTCTGGTCGCCTGCATCAA...............23114.0014000000000000000000000000501600001000010000000000000000000000000
.....................................................................................................................................................................CTGTCCTCGCTCTGGTCGCCTGC....................23113.00130000000000000000000000000000000000000000000000000000000000000013
..................................................................................................................................................................TCGCTGTCCTCGCTCTGGTC..........................20113.0013001000000000000000000000010100001060110000000000000000000000001
.......................................................................................................................................................................GTCCTCGCTCTGGTCGCCTGC....................21113.00130000000000000000000000000000000000100100000000000000000000000011
....................................................................................................................................................................GCTGTCCTCGCTCTGGTCGCCTGC....................24113.00130000000000000000000000000000000000000000000000000000000000000013
..................................T-GTTCAACATGAAGTTCCT..........................................................................................................................................................19111.0011000000000000000000000000000000001020000000000000000000000000008
.....................................................................................................................................................................CTGTCCTCGCTCTGGTCGCCTGCA...................24111.00110000000000000000000000000000000000000000000000000000000000000011
.GATTGATTAACCT--AACC............................................................................................................................................................................................17110.00100000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................GCTGTCCTCGCTCTGGTCGCCTGCA...................25110.00100000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................GATTGCCTTCGCTGTCCTCGCTCTGGT...........................27110.0010000000000000000000000000000000001000000000000000000000000000009
.............................A--ACT-GTTCAACATGAAGTTCCT..........................................................................................................................................................22110.0010001000000000000000000000010000001043000000000000000000000000000
..........................................................................................................................................................................CTCGCTCTGGTCGCCTGCATC.................2119.009000000000000010000000000000000001022000000000000000000000000003
.................................................................................................................................................................TTCGCTGTCCTCGCTCTGGT...........................2019.009000000000000010000000000000100002030020000000000000000000000000
..........................................................................................................................................................................CTCGCTCTGGTCGCCTGCATCAAT..............2419.009000000000000000000000000110200002020000000000000000000000000001
................................................................................................................................................................................CTGGTCGCCTGCATCAATGCCAAT........2419.009000000000000000000000000000000000000000000000000000000000000009
................................................................................................................................................................CTTCGCTGTCCTCGCTCTGGTCGCCTGCAT..................3018.008000000000000000000000000000000000000000000000000000000000000008
.............................................................................................................................................................TGCCTTCGCTGTCCTCGCTCT..............................2118.008000000000001000000000000000000000031030000000000000000000000000
....................................................................................................................................................................GCTGTCCTCGCTCTGGTC..........................1818.008000000000010010000000000000000002020020000000000000000000000000
..........................................................................................................................................................................CTCGCTCTGGTCGCCTGC....................1818.008001000100000000000000000000000000021000000000000000000000000003
..........................................................................................................................................................GATTGCCTTCGCTGTCCTCGCTC...............................2318.008000000000000000000000000000000000000000000000000000000000000008
.................................................................................................................................................................TTCGCTGTCCTCGCTCTGGTCGCCT......................2517.007000000000000000000000000000000000010000000000000000000000000006
....................................................................................................................................................................GCTGTCCTCGCTCTGGTCGCC.......................2117.007000000000000000000000000000100000000000000000000000000000000006
.................................................................................................................................................................TTCGCTGTCCTCGCTCTGGTCGC........................2317.007000000000000100000000000000000000010000000000000000000000000005
...............................................................................................................................................................CCTTCGCTGTCCTCGCTCTGGTCGC........................2517.007000000000000000000000000000000000010000000000000000000000000006
...................................................................................................................................................................CGCTGTCCTCGCTCTGGTCGCCT......................2317.007000000000000000000000000000000000020100000000000000000000000004
................................................................................................................................................................................CTGGTCGCCTGCATCAATGCCAATC.......2517.007000000000000000000000000000000000000000000000000000000000000007
..........................................................................................................................................................GATTGCCTTCGCTGTCCTCGCTCT..............................2417.007000000000000000000000000000000000011000000000000000000000000005
....................................................................................................................................................................GCTGTCCTCGCTCTGGTCGCCTGCATC.................2717.007000000000000000000000000000000000000000000000000000000000000007
......................................................................................................................................................................TGTCCTCGCTCTGGTCGCCTGCA...................2317.007000000000000000000000000000000000000000000000000000000000000007
................................................................................................................................................................................CTGGTCGCCTGCATCAATGCCAATCC......2617.007000000000000000000000000000000000000000000000000000000000000007
..........................................................................................................................................................GATTGCCTTCGCTGTCCTCGCT................................2217.007001000000000000000010000001000000001000000000000000000000000003
.................................................................................................................................................................TTCGCTGTCCTCGCTCTGGTC..........................2116.006000000000000100000000000000000000021110000000000000000000000000
.................................................................................................................................................................TTCGCTGTCCTCGCTCTGGTCGCCTGC....................2716.006000000000000000000000000000000000010010000000000000000000000004
.....................................................................................................................................................................CTGTCCTCGCTCTGGTCGCCTGCATC.................2616.006000000000000000000000000000000001000000000000000000000000000005
.............................................................................................................................................................TGCCTTCGCTGTCCTCGCTCTGGT...........................2416.006000000000000000000000000000000000002000000000000000000000000004
..................................................................................................................................................................TCGCTGTCCTCGCTCTGGTCGCCTGC....................2616.006000000000000000000000000000000000010000000000000000000000000005
................................ACT-GTTCAACATGAAGTTCCT..........................................................................................................................................................2116.006001000000000010000000000001000001010010000000000000000000000000
............................TA--ACT-GTTCAACATGAAGTTCCT..........................................................................................................................................................2316.006000000000000000000000000000200001000001000000000000000000000002
....................................................................................................................................................................GCTGTCCTCGCTCTGGTCGC........................2016.006000000000000010000000000000000001030000000000000000000000000001
..........................ACTA--ACT-GTTCAACATGAAGTTCCT..........................................................................................................................................................2516.006000000000000000000000000000100000000000000000000000000000000104
...........................................................................................................................................................ATTGCCTTCGCTGTCCTCGCTCTGGTC..........................2716.006000000000000000000000000000000001020000000000000000000000000003
...............................................................................................................................................................CCTTCGCTGTCCTCGCTCTGGTCGCCTGCA...................3016.006000000000000000000000000000000000000000000000000000000000000006
....................................................................................................................................................................GCTGTCCTCGCTCTGGTCGCCTGCAT..................2616.006000000000000000000000000000000000000000000000000000000000000006
............................................................................................................................................................TTGCCTTCGCTGTCCTCGCTCTGGT...........................2516.006000000000000000000000000000000000000000000000000000000000000006
.............................................................................................................................................................TGCCTTCGCTGTCCTCGCTCTG.............................2216.006000000000000000000000000000000001040010000000000000000000000000
...........................CTA--ACT-GTTCAACATGAAGTTCCT..........................................................................................................................................................2416.006000000000000000000000000011000000020000000000000000000000100001
......................................................................................................................................................................TGTCCTCGCTCTGGTCGC........................1815.005000000000000000000000000000000001000000000000000000000000000004
..................................T-GTTCAACATGAAGTTCCTG.........................................................................................................................................................2015.005000000000000010000000000000000000010000000000000000000000000003
...........................CTA--ACT-GTTCAACATGAAGTTCCTG.........................................................................................................................................................2515.005000000000000000000000000000000000021000000000000000000000000002
..................................................................................................................................................................TCGCTGTCCTCGCTCTGGT...........................1915.005001000000000000000000000000000000020110000000000000000000000000
.................................................................................................................................................................TTCGCTGTCCTCGCTCTGGTCGCC.......................2415.005000000001000000000000000000000000000000000000000000000000000004
.................................................................................................................................................................TTCGCTGTCCTCGCTCTG.............................1815.005001000000000010000000000000000000021000000000000000000000000000
..................................................................................................................................................................TCGCTGTCCTCGCTCTGGTCGCCTGCAT..................2815.005000000000000000000000000000000000000000000000000000000000000005
............CT--AACCAACAAAACTA--ACT-GTTC........................................................................................................................................................................2315.005000000000000000000000000000100000020000000000000000000000000002
......................................................................................................................................................................TGTCCTCGCTCTGGTCGCC.......................1915.005000000000000000000000000000000000030001000000000000000000000001
.......................................................................................................................................................................GTCCTCGCTCTGGTCGCCTGCATCAA...............2615.005001000000000000000000000000100000000000000000000000000000000003
.............................................................................................................................................................TGCCTTCGCTGTCCTCGCT................................1915.005001000000000000000000000000000001012000000000000000000000000000
..............................................................................................................................................................GCCTTCGCTGTCCTCGCTCTGGTCGCC.......................2715.005000000000000000000000000000000000000000000000000000000000000005
....................................GTTCAACATGAAGTTCCTG.........................................................................................................................................................1915.005000000000000000000000000010000000020000000000000000000000000002
........................................................................................................................................................................................CTGCATCAATGCCAATCCCT---.2015.005000000000000010000000000001000000020010000000000000000000000000
.....................................................................................................................................................................CTGTCCTCGCTCTGGTCGC........................1915.005000000000000000000000000000000000010000000000000000000000000004
..............................................................................................................................................................GCCTTCGCTGTCCTCGCTCTGGTC..........................2415.005000000000000000000000000000000000011000000000000000000000000003
..........................................................................................................................................................GATTGCCTTCGCTGTCCTC...................................1915.005000000000000000000000000000000000001000000000000000000000000004
.......................................................................................................................................................................GTCCTCGCTCTGGTCGCCTGCATC.................2415.005000000000000000000000000000000000000000000000000000000000000005
......................................................................................................................................................................TGTCCTCGCTCTGGTCGCCTGC....................2215.005000000000000000000000000000000000000000000000000000000000000005
...........................................................................................................................................................ATTGCCTTCGCTGTCCTCGCT................................2115.005000000000000000000000000000000001000000000000000000000000000004
.....GATTAACCT--AACCAACAAAACT...................................................................................................................................................................................2215.005000000000000000000000000000000002021000000000000000000000000000
...............................................................................................................................................................CCTTCGCTGTCCTCGCTCTG.............................2015.005001000000000000000000000000000000021010000000000000000000000000
TGATTGATTAACCT--AAC.............................................................................................................................................................................................1715.005000000000000000000000000000000000000000000000000000000000000005
.....................................................................................................................................................................CTGTCCTCGCTCTGGTCGCCTGCATCAA...............2815.005000000000000000000000000000000000000000000000000000000000000005
....TGATTAACCT--AACCAACAAAACT...................................................................................................................................................................................2315.005001000000000000000000000101100000001000000000000000000000000000
.................................CT-GTTCAACATGAAGTTCCT..........................................................................................................................................................2014.004000000000000000000000001000000000000000000000000000000000000003
..............................................................................................................................................................GCCTTCGCTGTCCTCGCTCT..............................2014.004000000000000000000000000000000002010010000000000000000000000000
................................................................................................................................................................CTTCGCTGTCCTCGCTCT..............................1814.004000000000000000000000000000000001010000000000000000000000000002
................................................................................................................................................................................CTGGTCGCCTGCATCAATGCCAATCCC.....2714.004000000000000000000000000000000000000000000000000000000000000004
..................................................................................................................................................................TCGCTGTCCTCGCTCTGGTCGCCTGCA...................2714.004000000000000000000000000000000000000000000000000000000000000004
..........................................................................................................................................................................CTCGCTCTGGTCGCCTG.....................1714.004000000000000000000000000000000000000000000000000000000000000004
...................CAACAAAACTA--ACT-GTTCAAC.....................................................................................................................................................................2114.004000000000000000000000000000000000021000000000000000000000000001
..................................................................................................................................................................TCGCTGTCCTCGCTCTGGTCGCC.......................2314.004000000000000000000000000000000000010000000000000000000000000003
....................................................................................................................................................................GCTGTCCTCGCTCTGGTCGCCTG.....................2314.004000000000000000000000000000000000000000000000000000000000000004
................AACCAACAAAACTA--ACT-GT..........................................................................................................................................................................1914.004000000000000000000000000000300000010000000000000000000000000000
.............................................................................................................................................................................GCTCTGGTCGCCTGCATCAATGCCAATC.......2814.004000000000000000000000000000000000000000000000000000000000000004
.....................................................................................................................................................................CTGTCCTCGCTCTGGTCGCCTGCAT..................2514.004000000000000000000000000000000000000000000000000000000000000004
.........................AACTA--ACT-GTTCAACATGAAGT..............................................................................................................................................................2214.004000000000000000000000000000000000040000000000000000000000000000
.........................................................................................................................................................................CCTCGCTCTGGTCGCCTGCAT..................2114.004000000000000000000000000000000000000000000000000000000000000004
.....................................................................................................................................................................CTGTCCTCGCTCTGGTCGCCT......................2114.004000000000000000000000000000000000000000000000000000000000000004
....................................................................................................................................................................GCTGTCCTCGCTCTGGTCGCCTGA....................2414.004000000000000000000000000000000000000000000000000000000000000004
...TTGATTAACCT--AACC............................................................................................................................................................................................1514.004000000000000000000000000000000000000000000000000000000000000004
........................................................................................................................................................................TCCTCGCTCTGGTCGCCTGC....................2014.004000000000000000000000000000000000000000000000000000000000000004
............................................................................................................................................................TTGCCTTCGCTGTCCTCGCTC...............................2114.004000000000000000000000000100000000012000000000000000000000000000
..........................................................................................................................................................GATTGCCTTCGCTGTCCTCGCTCTGGTC..........................2814.004000000000000000000000000000000000000000000000000000000000000004
...................................................................................................................................................................CGCTGTCCTCGCTCTGGTCG.........................2014.004000000000001000000000000000100000000000000000000000000000000002
....................................................................................................................................................................GCTGTCCTCGCTCTGGTCGCCT......................2213.003001000000000000000000000000000001010000000000000000000000000000
..ATTGATTAACCT--AACCAACAA.......................................................................................................................................................................................2113.003000000000000000000000000001000000020000000000000000000000000000
.....................................................................................................................................................................CTGTCCTCGCTCTGGTCGCC.......................2013.003000000000000000000000000000000001000000000000000000000000000002
.....................................................................................................................................................................................CGCCTGCATCAATGCCAATCCCT---.2313.003001000000000000000000000000000000001010000000000000000000000000
................................................................................................................................................................CTTCGCTGTCCTCGCTCTGGTCG.........................2313.003000000000000010000000000000000000000000000000000000000000000002
....TGATTAACCT--AACCAACAAAACTA--ACT-............................................................................................................................................................................2713.003000000000000000000000000000000002001000000000000000000000000000
.........................................................................................................................................................................CCTCGCTCTGGTCGCCTGCATCA................2313.003000000000000000000000000000000000000000000000000000000000000003
.................................................................................................................................................................................TGGTCGCCTGCATCAATGCCAAT........2313.003000000000000000000000000000000000000000000000000000000000000003
..ATTGATTAACCT--AACC............................................................................................................................................................................................1613.003000000000000000000000000000000000000000000000000000000000000003
..................................................................................................................................................................TCGCTGTCCTCGCTCTGGTCGCCT......................2413.003000000000000000000000000000000000000000000000000000000000000003
..............................................................................................................................................................GCCTTCGCTGTCCTCGCTCTG.............................2113.003000000000000000000000000000000000030000000000000000000000000000
...................CAACAAAACTA--ACT-GTTCAACATG..................................................................................................................................................................2413.003001000000000000000000000000000000001000000000000000000000000001
....................................GTTCAACATGAAGTTCCTGA........................................................................................................................................................2013.003000000000001000000000000100000000010000000000000000000000000000
..........................................................................................................................................................................CTCGCTCTGGTCGCCTGCAT..................2013.003000000000000000000000000000000000001000000000000000000000000002
....................................................................................................................................................................GCTGTCCTCGCTCTGGTCGCCTGCATCAAT..............3013.003000000000000000000000000000000000000000000000000000000000000003
............................................................................................................................................................................CGCTCTGGTCGCCTGC....................1613.003000000000000000000000000000000000000000000000000000000000000003
.....................................................................................................................................................................................CGCCTGCATCAATGCCAATC.......2013.003000000000000000000000000000000000002000000000000000000000000001
...........................................................................................................................................................................TCGCTCTGGTCGCCTGCATCAA...............2213.003000000000000000000000000000000000000000000000000000000000000003
................................ACT-GTTCAACATGAAGTTCCTGGTAA.....................................................................................................................................................2613.003000000000000000000000000000000000000000000000000000000000000003
....TGATTAACCT--AACCAACAAAACTA--ACT-G...........................................................................................................................................................................2813.003001000000000000000000000000000002000000000000000000000000000000
.............................................................................................................................................................TGCCTTCGCTGTCCTCGCTCTGGTC..........................2513.003000000000000000000000000000000000011000000000000000000000000001
.............................................................................................................................................................TGCCTTCGCTGTCCTCGCTC...............................2013.003000000000000000000000000000000001000010000000000000000000000001
.GATTGATTAACCT--AACCAACAAAA.....................................................................................................................................................................................2413.003000000000000000000000000002000000001000000000000000000000000000
............................................................................................................................................................................CGCTCTGGTCGCCTGCATCAATGCCA..........2613.003000000000000000000000000000000001011000000000000000000000000000
..........................ACTA--ACT-GTTCAACATGAAGTTCCTG.........................................................................................................................................................2613.003000000000000000000000000000000000000000000000000000000000000003
.GATTGATTAACCT--AACCAAC.........................................................................................................................................................................................2013.003000000000000010000000000000000000001000000000000000000000000001
..ATTGATTAACCT--AACCAAC.........................................................................................................................................................................................1913.003000000000000000000000000001100000001000000000000000000000000000
....TGATTAACCT--AACCAACAAAA.....................................................................................................................................................................................2113.003000000000000000000000000000000000012000000000000000000000000000
..............................................................................................................................................................GCCTTCGCTGTCCTCGCT................................1813.003000000000000000000000000000000000010020000000000000000000000000
..................................................................................................................................................................TCGCTGTCCTCGCTCTGGTCG.........................2113.003000000000000000000000000000000000000000000000000000000000000003
TGATTGATTAACCT--AACCAAC.........................................................................................................................................................................................2113.003000000000000010000000000000000000010000000000000000000000000001
......................................................................................................................................................................TGTCCTCGCTCTGGTCGCCT......................2013.003000000000000000000000000011000000010000000000000000000000000000
.........AACCT--AACCAACAAAACTA--ACT-GT..........................................................................................................................................................................2413.003001000000000000000000000000000000010010000000000000000000000000
...................................................................................................................................................................CGCTGTCCTCGCTCTGGTCGCCTGCA...................2613.003000000000000000000000000000000000000000000000000000000000000003
.........................................................................................................................................................................CCTCGCTCTGGTCGCCTGCATC.................2213.003000000000000000000000000000000000000000000000000000000000000003
.............................................................................................................................................................TGCCTTCGCTGTCCTCGCTCTGGTCGC........................2713.003001000000001000000000000000000000010000000000000000000000000000
..........................................................................................................................................................GATTGCCTTCGCTGTCCTCGCTCTGGTCGCC.......................3112.002000000000000000000000000000000000000000000000000000000000000002
..................................T-GTTCAACATGAAGTTCCTGA........................................................................................................................................................2112.002000000000000000000000000000100000010000000000000000000000000000
...TTGATTAACCT--AACCAACAA.......................................................................................................................................................................................2012.002000000000000000000000000000200000000000000000000000000000000000
.....GATTAACCT--AACCAACAAAA.....................................................................................................................................................................................2012.002000000000000000000000000000000000011000000000000000000000000000
...............................................................................................................................................................CCTTCGCTGTCCTCGCTCT..............................1912.002000000000000000000000000000000000020000000000000000000000000000
............................TA--ACT-GTTCAACATGAAGTT.............................................................................................................................................................2012.002000000000000000000000000001000000010000000000000000000000000000
..................................T-GTTCAACATGAAGTTCCTGAC.......................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000002
......................................................................................................................................................................TGTCCTCGCTCTGGTCGCCTGCATCAA...............2712.002000000000000000000000000001000000001000000000000000000000000000
....................AACAAAACTA--ACT-GTTCAACATGAAGT..............................................................................................................................................................2712.002000000000000000000000000000000001001000000000000000000000000000
...TTGATTAACCT--AACCAAC.........................................................................................................................................................................................1812.002001000000000000000000000000000000000000000000000000000000000001
......ATTAACCT--AACCAACAAAACTA--ACT-GT..........................................................................................................................................................................2712.002000000000001000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................TGCATCAATGCCAATCCCT---.1912.002000000000000000000000000000000000011000000000000000000000000000
............................................................................................................................................................TTGCCTTCGCTGTCCTCGCTCTGGTCGCCT......................3012.002000000000000000000000000000000000000000000000000000000000000002
................................................................................................................................................................CTTCGCTGTCCTCGCTCTGGTCGCCTGCA...................2912.002000000000000000000000000000000000000000000000000000000000000002
......................................................................................................................................................................TGTCCTCGCTCTGGTCGCCTGCAT..................2412.002000000000000000000000000000000000000000000000000000000000000002
......................................................................................................................................................................................GCCTGCATCAATGCCAATCCC.....2112.002001000000000000000000000000000001000000000000000000000000000000
..........................ACTA--ACT-GTTCAACATGAAGT..............................................................................................................................................................2112.002000000000000010000000000000000001000000000000000000000000000000
.....GATTAACCT--AACCAACAAAACTA--ACT-GT..........................................................................................................................................................................2812.002000000000000000000000000000000000010010000000000000000000000000
........TAACCT--AACCAACAAAACT...................................................................................................................................................................................1912.002000000000000000000000000000000000011000000000000000000000000000
..................................................................................................................................................................................GGTCGCCTGCATCAATGCCAATCCCT---.2612.002000000000000000000000000000000000000000000000000000000000000002
TGATTGATTAACCT--AACCAA..........................................................................................................................................................................................2012.002000000000000000000000000002000000000000000000000000000000000000
........................................................................................................................................................................TCCTCGCTCTGGTCGCCTGCAT..................2212.002000000000000000000000000000000000000000000000000000000000000002
.GATTGATTAACCT--AACCAACAAAAC....................................................................................................................................................................................2512.002000000000000000000000000010000000001000000000000000000000000000
...........................CTA--ACT-GTTCAACATGAAGTT.............................................................................................................................................................2112.002000000000000000000000000000000000011000000000000000000000000000
.............................................................................................................................................................TGCCTTCGCTGTCCTCGC.................................1812.002000000000000000000000000000000001010000000000000000000000000000
......................................................................................................................................................................TGTCCTCGCTCTGGTCGCCTGCAA..................2412.002000000000000000000000000000000000000000000000000000000000000002
.................................CT-GTTCAACATGAAGTTCCTG.........................................................................................................................................................2112.002000000000000000000000000000000000001000000000000000000000000001
...........................CTA--ACT-GTTCAACATGAAGTTC............................................................................................................................................................2212.002000000000000000000000000000000001001000000000000000000000000000
.......TTAACCT--AACCAACAAAACT...................................................................................................................................................................................2012.002000000000000000000000000000000000020000000000000000000000000000
.........................................................................................................................................................................CCTCGCTCTGGTCGCCTGCATCAATGCC...........2812.002000000000000000000000000000000000000000000000000000000000000002
............................................................................................................................................................................CGCTCTGGTCGCCTGCATCAAT..............2212.002000000000000000000000000000000000010010000000000000000000000000
..........................................................................................................................................................................CTCGCTCTGGTCGCCTGCATCA................2212.002000000000000000000000000100100000000000000000000000000000000000
.......................................................................................................................................................................................CCTGCATCAATGCCAATCCC.....2012.002000000000000000000000000000000001000010000000000000000000000000
............CT--AACCAACAAAACTA--ACT-GTTCAA......................................................................................................................................................................2512.002000000000000000000000000010000000010000000000000000000000000000
.........................................................................TG-G---A----------CT--TGGACATATGGA-----TGGCTG-A........................................................................................2512.002000000000000100000000000001000000000000000000000000000000000000
..............................................................................................................................................................................CTCTGGTCGCCTGCATC.................1712.002000000000000000000000000000000000000000000000000000000000000002
...........................................................................................................................................................................TCGCTCTGGTCGCCTGCATCAATGCCAATC.......3012.002000000000000000000000000000000000000000000000000000000000000002
................................ACT-GTTCAACATGAAGTTCCTGA........................................................................................................................................................2312.002000000000000000000000000000100000000000000000000000000000000001
.........................................................................................................................................................................CCTCGCTCTGGTCGCCTGCATCAA...............2412.002000000000000000000000000000100001000000000000000000000000000000
...........................CTA--ACT-GTTCAACATGAAGT..............................................................................................................................................................2012.002000000000000000000000000000000000001001000000000000000000000000
...................................................................................................................................................................CGCTGTCCTCGCTCTGGTCGCCTGA....................2512.002000000000000000000000000000000000000000000000000000000000000002
...........CCT--AACCAACAAAACTA--ACT-GTT.........................................................................................................................................................................2312.002000000000000000000000000000000001010000000000000000000000000000
.GATTGATTAACCT--AAC.............................................................................................................................................................................................1612.002000000000000000000000000000000000000000000000000000000000000002
...............................................................................................................................................................................TCTGGTCGCCTGCATCAATGCCAATCC......2712.002000000000000000000000000000000000000000000000000000000000000002
...TTGATTAACCT--AACCAACAAAACTA--ACT-............................................................................................................................................................................2812.002000000000000000000000000000000002000000000000000000000000000000
...................................................................................................................................................................................GTCGCCTGCATCAATGCC...........1812.002000000000001000000000000000000001000000000000000000000000000000
.................................................................................................................................................................................TGGTCGCCTGCATCAATGCCAATCCCT---.2712.002000000000000000000000000000000000000000000000000000000000000002
.............................A--ACT-GTTCAACATGAAGTTCCTG.........................................................................................................................................................2312.002000000000000000000000000000000001010000000000000000000000000000
......................................................................................................................................................................................GCCTGCATCAATGCCAATCCCT---.2212.002000000000000000000000000000000001010000000000000000000000000000
........................................AACATGAAGTTCCTGGTA......................................................................................................................................................1812.002000000000000000000000000002000000000000000000000000000000000000
............................................................................................................................................................TTGCCTTCGCTGTCCTCGCT................................2012.002000000000000000000000000000000000020000000000000000000000000000
......................................................................................................................................................................TGTCCTCGCTCTGGTCGCCTG.....................2112.002001000000000000000000000000000000000000000000000000000000000001
....................................GTTCAACATGAAGTTCCT..........................................................................................................................................................1812.002000000000000000000000000000000001010000000000000000000000000000
...................................................................................................................................................................................GTCGCCTGCATCAATGCCAATCCCT---.2512.002000000000000000000000000000000000000000000000000000000000000002
.........................................................................................................................................................................CCTCGCTCTGGTCGCCTGCATCAAT..............2512.002001000000000000000000000000000000000000000000000000000000000001
.......TTAACCT--AACCAACAAAACTA--ACT-GTT.........................................................................................................................................................................2712.002000000000000000000000000000000000020000000000000000000000000000
...TTGATTAACCT--AACCAACAAAACT...................................................................................................................................................................................2412.002000000000000000000000000000000000002000000000000000000000000000
............................TA--ACT-GTTCAACATGAAGT..............................................................................................................................................................1912.002000000000000000000000000000000000010000000000000000000000000001
.......................................................................................................................................................................................CCTGCATCAATGCCAATCCCT---.2111.001000000000000000000000000000000001000000000000000000000000000000
..........................................................................................................................................................GATTGCCTTCGCTGTC......................................1611.001000000000000000000000000000000000000000000000000000000000000001
.................................................................................................................................................................TTCGCTGTCCTCGCTCTGGTCGCCTG.....................2611.001000000000000000000000000000000001000000000000000000000000000000
........................................................................................................................................................................TCCTCGCTCTGGTCGC........................1611.001000000000000000000000000000000000000000000000000000000000000001
.............................................................................................................................................................................GCTCTGGTCGCCTGCATCA................1911.001001000000000000000000000000000000000000000000000000000000000000
.....................ACAAAACTA--ACT-GTTCAAC.....................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................GTCCTCGCTCTGGTCGCCTGCATCAATGCC...........3011.001000000000000000000000000000000000000000000000000000000000000001
.............................................................................................................................CCTGT----TTCCTA------AAATCATAG.....................................................2011.001000000000000000000000000100000000000000000000000000000000000000
...............................................................................................................................................................................TCTGGTCGCCTGCATCAATGCCAATC.......2611.001000000000000000000000000000000000000000000000000000000000000001
..................................T-GTTCAACATGAAGTTCCTC.........................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000001
............................................................................................................................................................................CGCTCTGGTCGCCTGCATCAATG.............2311.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CGCTCTGGTCGCCTGCATCAATGCCAA.........2711.001000000000000000000000000000000000000000000000000000000000000001
......................CAAAACTA--ACT-GTTCAACATGAAGTTCCT..........................................................................................................................................................2911.001000000000000000000000000001000000000000000000000000000000000000
............................TA--ACT-GTTCAACATGAAG...............................................................................................................................................................1811.001000000000000000000000000000000000001000000000000000000000000000
................................ACT-GTTCAACATGAAGTTCCTGG........................................................................................................................................................2311.001000000000000000000000000010000000000000000000000000000000000000
droMoj3
TGATTGATTTCTAC--AACTAGCAAAGCCA--AATAACTCAACATGAAGTTCCTGGTAAGTGATCCT-TC-ACCAGTACCA----------GTGCTCTAG-----ACCCAACCAGCTG-ACTAATCCTTGACCTGTTTCA------TTTCATCAGATTGCATTCGCTCTGTGCGCTCTGGCTGCCTGCATCAATGCCAATCCCT---ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................ATTCGCTCTGTGCGCTCTGGC...........................2112.002200000
............................CA--AATAACTCAACATGAAGTTCCT..........................................................................................................................................................2411.001100000
.GATTGATTTCTAC--AACTAGC.........................................................................................................................................................................................2011.001100000
.................................................................................................................................................................TTCGCTCTGTGCGCTCTG.............................1811.001100000
..................................................................................................................................................................................GGCTGCCTGCATCAATGCCA..........2011.001100000
........................................................................................................................................................................................CTGCATCAATGCCAATCCCT---A2111.001100000
..................................................................................................................................................................................GGCTGCCTGCATCAATGC............1811.001100000
droGri2
TGATTGATTACCAC--AACCAACAAAACTA--AAT-ATTCAACATGAAGTTCCTGGTAAGTAATCCT-------GGCA-CT----------AT--TCACT-----GCTTG-ACAGGCATACTAATCCTGTGGGTTTTTATTTTGT-TACTTGCAGATTGCTTTTGTCGCCATCGCCTTCTTCGCCTGCGTTAGCGCTGGTGGAT---ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TGATTGATTACTAC--AACCAACAAAACTTAAAAAAATTCAATATGAAATACCTGGTAAGTAGTAA--------AGAC-TCTCAAGCGTCTCG--AAAAG-----GACTT-GCA------TTAATCCTT-GGATCCTTAATTT---CTGTTACAGTTCGTTTGCATCAGCTTGGCCCTCTTCGCCTACATCAGCGCTAACCCAGCTTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....GATTACTAC--AACCAACAAAAC....................................................................................................................................................................................2115.00505000
.....GATTACTAC--AACCAACAAAACT...................................................................................................................................................................................2213.00303000
.......................................................................................................................................................................AGCTTGGCCCTCTTCGCCTACATCAG...............2612.00202000
........................................................................................................................................................................GCTTGGCCCTCTTCGCCTACATC.................2312.00202000
.....GATTACTAC--AACCAACAAAA.....................................................................................................................................................................................2012.00202000
.....GATTACTAC--AACCAACAAAACTT..................................................................................................................................................................................2312.00202000
..................................................................................................................................................................................CTTCGCCTACATCAGCGCTAACCC......2411.00101000
..........................................................................................................................................................................TTGGCCCTCTTCGCCTACATCAGCGCT...........2711.00101000
....................AACAAAACTTAAAAAAATTCAAT.....................................................................................................................................................................2311.00101000
......................................................................................................................................................................................GCCTACATCAGCGCTAACCCAG....2211.00101000
.......................AAAACTTAAAAAAATTCAATATGAA................................................................................................................................................................2511.00101000
..........................................................................................................................................................................TTGGCCCTCTTCGCCTACATCAGC..............2411.00101000
........................................................................................................................................................................................CTACATCAGCGCTAACCCAGC...2111.00101000
......ATTACTAC--AACCAACAAAACTTAAAA..............................................................................................................................................................................2611.00101000
...TTGATTACTAC--AACCAACAAA......................................................................................................................................................................................2111.00101000
..............................................................................................................................CTT-GGATCCTTAATTT---CTGTTACAG.....................................................2511.00101000
..ATTGATTACTAC--AACCAACAA.......................................................................................................................................................................................2111.00101000
TGATTGATTACTAC--AACCAAC.........................................................................................................................................................................................2111.00101000
.............................................................................................................................................................CGTTTGCATCAGCTTGGCCCT..............................2111.00101000
...............................................................................................................................................................................CCTCTTCGCCTACATCAGCGC............2111.00101000
..................................................................................................................................................................................CTTCGCCTACATCAGCGCTAACC.......2311.00101000
...................................................................................................................................................................................TTCGCCTACATCAGCGCTAACCC......2311.00101000
.....GATTACTAC--AACCAACAAA......................................................................................................................................................................................1911.00101000
...........................................................................................................................................................................TGGCCCTCTTCGCCTACATCAGCGC............2511.00101000
.................................AAAATTCAATATGAAATACCTG.........................................................................................................................................................2211.00101000
.............................................................................................................................CCTT-GGATCCTTAATTT---CTGTTACA......................................................2511.00101000
..ATTGATTACTAC--AACCAACAAA......................................................................................................................................................................................2211.00101000
......ATTACTAC--AACCAACAAAA.....................................................................................................................................................................................1911.00101000
..................................................................................................................................GGATCCTTAATTT---CTGTTACAG.....................................................2211.00101000
...............................................................................................................................................................TTTGCATCAGCTTGGCCCTC.............................2011.00101000
dp5
TGATTGATTATCCCACAACCAACAAAACTA--AGC-ATTCACCATGAAGTACCTGGTAAGTAGTCCT-GC----AGAC-CC----------CTGCTCAAG-----GA----TCAGCCA-GCTAATCCTCC-------TCCT------CCCCACAGTTCGTCTGCGTCAGCCTGGCCCTCTTCGCCTACATCAACGCTAGCCCGGTGTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................TTCACCATGAAGTACCTGGT.......................................................................................................................................................2011.0010100000000
..................................................................................................................................................................GCGTCAGCCTGGCCCTCTTCGCCT......................2411.0010100000000
...................................................................................................................................................................CGTCAGCCTGGCCCTCTTCGCCTACA...................2611.0010100000000
..........................ACTA--AGC-ATTCACCATGAAG...............................................................................................................................................................2011.0010100000000
............................TA--AGC-ATTCACCATGAAGTACCT..........................................................................................................................................................2311.0010100000000
............................TA--AGC-ATTCACCATGAAGTA.............................................................................................................................................................2011.0010100000000
droPer2
TGATTGATTATCCCACAACCAACAAAACTA--AGC-ATTCACCATGAAGTACCTGGTAAGTAGTCCT-GC----AGAC-CC----------CTGCTCAAG-----GA----TCAGCCA-GCTAATCCTCC-------TCCT------CCCCACAGTTCGTCTGCATCAGCCTGGCCCTCTTCGCCTACATCAACGCTAGCCCGGTGTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................CTTCGCCTACATCAACGCTAGCC.......2311.001010000
..........................................................................................................................................................GTTCGTCTGCATCAGCCTGGCC................................2211.001010000
droAna3
TGATTGATTTGTCTA-----------ACTA--AGC-ACTAACCATGAAGTACCTGGTAAGTTGTTA-----GC-AAGC-CT----------CG----ACTCCCAGGA-----CAGCCCAGCTTATCCTTTGGATTTCTCCTTTTC-TCTCCTTAGTTCGTCTGCGTCAGCCTCGCCCTCTTTGCCTACATCAACGCCAGCCCCT---ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................TCTGCGTCAGCCTCGCCCTCTTTGCCTAC....................2911.001100000
....................................................................................................................................................................GTCAGCCTCGCCCTCTTTGCCT......................2211.001100000
...................................................................................................................................................................CGTCAGCCTCGCCCTCTTTGC........................2111.001100000
.......................................................................................................................................................................AGCCTCGCCCTCTTTGCCTACATCAA...............2611.001100000
...................................................................................................................................................................CGTCAGCCTCGCCCTCTTTG.........................2011.001100000
............................................................................................................................................................TCGTCTGCGTCAGCCTCGCCCT..............................2211.001100000
..............................................................................................................................................................GTCTGCGTCAGCCTCGCCCTC.............................2111.001100000
............................................................................................................................................................................CGCCCTCTTTGCCTACATCAA...............2111.001100000
............................................................................................................................................................TCGTCTGCGTCAGCCTCGCCC...............................2111.001100000
.................................................................................................................................................................TGCGTCAGCCTCGCCCTCTTTG.........................2211.001100000
...............................................................................................................................................................TCTGCGTCAGCCTCGCCCTCTTTGC........................2511.001100000
...........................................................................................................................................................TTCGTCTGCGTCAGCCTCGCCCTCT............................2511.001100000
.......................................................................................................................................................................................CCTACATCAACGCCAGCCCCT---.2111.001100000
.................................................................................................................................................................TGCGTCAGCCTCGCCCTCTT...........................2011.001100000
..............................................................................................................................................................................CCCTCTTTGCCTACATCAACGCCAGCCC......2811.001100000
............................................................................................................................................................TCGTCTGCGTCAGCCTCGCCCTCT............................2411.001100000
droBip1
TGATTGATTTGTCTA-----------ACTA--AGC-ACTAACCATGAAGTACCTGGTAAGTTGTTA-----GCAA-G---C----------CT--TGACCCCCAGGA-----CAGCCCGACTTATCCTT-GGATTTCTCTT-------TCCTTAGTTCGTTTGCGTCAGCCTTGCCCTCTTCGCCTACATCAACGCCAGCCCCT---ASizeHit CountTotal NormTotal
No Reads
droKik1
TGATTGATTACCCCA-AACCAACAAAACTA--ACTAATTCACCATGAAGTACCTGGTAAGTTATAAG-------CAAC-TA----------CC--AAAGG-----AAGTG-GCAGCCA-GCTAATCCTCCGAATGTCCTCCCGC--TATCCTTAGATCATCTGCGTCTCTCTGGCTCTCTTCGCCTATATCAACGCCAGCCCGGT---SizeHit CountTotal NormTotal
No Reads
droRho1
TGATTGATTACCC-A-AACCAACAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TGATTGATTACCCCA-AACCAACAAAACTA--AGC-ACTCACCATGAAGTACCTGGTAAGTTGTGGT-------AGTC-CC----------CG--TGAAG-----GAGTG-GCAGCCA-ACTGATCCTCCGGATTTCCCCTTTT--CACCTTCAGATTGTCTGCGTTACCCTGGCCCTTTTCGCCTACATCAACGCCAGCCCAGC---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................CTTTTCGCCTACATCAACGCC...........21174.0074000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001020010000000000000000000000000000000000000000000002000000000000000000002103132063000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..........................................................................AGTC-CC----------CG--TGAAG-----GAGTG-G................................................................................................1914.0040000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000020000000000000000000000000
...............................................................................................................................TCCGGATTTCCCCTTTT--CACCTTCA......................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000100011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CA-AACCAACAAAACTA--AGC-A...........................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CAAAACTA--AGC-ACTCACCATGAAGTA.............................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TTTCGCCTACATCAACGCCAGC........2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CAAAACTA--AGC-ACTCACCATGAA................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACAAAACTA--AGC-ACTCACCA....................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................GCCA-ACTGATCCTCCGGAT..........................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................GTTACCCTGGCCCTTTTCGCCTACATCA................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................TA--AGC-ACTCACCATGAAGTACC...........................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000
.....................ACAAAACTA--AGC-ACTCACCAT...................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ATTGATTACCCCA-AACCAACAAAACT...................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................TACCCTGGCCCTTTTCGCCTACATCA................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TTACCCCA-AACCAACAAAACT...................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................CGCCTACATCAACGCCAGCC.......2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CAAAACTA--AGC-ACTCACCATGAAGT..............................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................CCTTTTCGCCTACATCAACGCCAGCCC......2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................AAACTA--AGC-ACTCACCATGAAGTA.............................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAACAAAACTA--AGC-ACTCACCA....................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGCGTTACCCTGGCCCTTTTCGCCTAC....................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AAAACTA--AGC-ACTCACCATGAAGTAC............................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................GCCCTTTTCGCCTACATCAAC..............2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000010002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................GTAAGTTGTGGT-------AGTC-CC----------CG--.................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000
.................ACCAACAAAACTA--AGC-ACT.........................................................................................................................................................................1914.0040000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....TGATTACCCCA-AACCAACAA.......................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AAACTA--AGC-ACTCACCATGA.................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................CTGGCCCTTTTCGCCTACATCA................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CA-AACCAACAAAACTA--AGC-ACTCACCAT...................................................................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................GATTTCCCCTTTT--CACCTTCAG.....................................................2214.0040000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CCCA-AACCAACAAAACTA--AGC-ACTCACC.....................................................................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................GTTACCCTGGCCCTTTTCGCC.......................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGCGTTACCCTGGCCCTTTTCG.........................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............A-AACCAACAAAACTA--AGC-ACTCACCAT...................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ACTA--AGC-ACTCACCATGAAGTACCTGA........................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
.......................................CACCATGAAGTACCTGGTAAGTTGTGG..............................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CA-AACCAACAAAACTA--AGC-ACTCACCATG..................................................................................................................................................................2913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................ACATCAACGCCAGCCCAGC---1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................GTTACCCTGGCCCTTTTCG.........................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AAACTA--AGC-ACTCACCAT...................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CAAAACTA--AGC-ACTCACCATGAAGTACC...........................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGATTGATTACCCCA-AACCAACAAAACTA--AGC-ACTCACCATGAAGTACCTGGTAAGTTGTGGT-------AGTC-CC----------CT--TGAAG-----GAGTG-GCAGCCA-TCTGATCCTCCGTATTTCCCCTTTC--CACCTTCAGATCGCCTGTGTTACCCTGGCCCTGTTCGCCTACATCAACGCCAGCCCAGC---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................ATCGCCTGTGTTACC......................................1515.00500000032000000000
.....................................................................................................................................................................TTACCCTGGCCCTGTTCGC........................1914.00400010001002000000
..........................................................................................................................................................GATCGCCTGTGTTACC......................................1613.00300000021000000000
...........................................................................................................................................................ATCGCCTGTGTTACCCT....................................1713.00300000021000000000
..........................................................................................................................................................GATCGCCTGTGTTACCCT....................................1813.00300000030000000000
..........................................................................................................................................................GATCGCCTGTGTTACCCTGGCCCT..............................2412.00200010001000000000
..........................................................................................................................................................GATCGCCTGTGTTAC.......................................1512.00200000011000000000
...............................................AGTACCTGGTAAGTT..................................................................................................................................................1511.00100000000001000000
.............................................................................................................................................................CGCCTGTGTTACCCT....................................1511.00100000001000000000
.........................AACTA--AGC-ACTCACCATGAAGA..............................................................................................................................................................2211.00100000010000000000
................................................................................................................................................................CTGTGTTACCCTGGCCCTGTTCGCCTACATCA................3211.00100000010000000000
........................AAACTA--AGC-ACTCACCATGAA................................................................................................................................................................2111.00100000001000000000
...........CCCA-AACCAACAAAACTA--AGC-ACTCACC.....................................................................................................................................................................2811.00100000000000010000
...........................................................................GTC-CC----------CT--TGAAG-----GAGTG-GC...............................................................................................1911.00100000000001000000
...................................................................................................................................................ACCTTCAGATCGCCTGTGTTA........................................2111.00100000000000010000
.........................................................................................................................................................................................TACATCAACGCCAGCCC......1711.00100000001000000000
.......................................................................................................................................TCCCCTTTC--CACCTTCAGT....................................................1911.00100000000001000000
....................AACAAAACTA--AGC-ACTCA.......................................................................................................................................................................1811.00100000000001000000
.............................................GAAGTACCTGGTAAGTTG.................................................................................................................................................1811.00100000000001000000
...........................................................................................................................................................ATCGCCTGTGTTACCC.....................................1611.00100000001000000000
.......................................................................................................................................................................ACCCTGGCCCTGTTCGCCTACATCAACGCC...........3011.00100000010000000000
.......TTACCCCA-AACCAACAAAACTA--AGC-A...........................................................................................................................................................................2611.00100000001000000000
................................................................................C----------CT--TGAAG-----GAGTG-GCAGC............................................................................................1811.00100000000001000000
.....................................................TGGTAAGTTGTGGT-------AGTC-.................................................................................................................................1811.00100000000001000000
....................................................................................................................................................................GTTACCCTGGCCCTGTTCGCCTACATC.................2711.00100000000001000000
.................................................................................................AAG-----GAGTG-GCAGCCA-TCTGAT...................................................................................2111.00100000001000000000
.............................................................................................................................................................CGCCTGTGTTACCCTG...................................1611.00100000010000000000
................................................GTACCTGGTAAGTTGTGG..............................................................................................................................................1811.00100000000001000000
................AACCAACAAAACTA--AGC-ACT.........................................................................................................................................................................2011.00100000001000000000
...............................................................................................................................................................CCTGTGTTACCCTGGCCCTGT............................2111.00100000010000000000
............................................................................................................................................................TCGCCTGTGTTACCCT....................................1611.00100000001000000000
................................................................................................................................................................................CTGTTCGCCTACATCAACGC............2011.00100000000001000000
........................AAACTA--AGC-ACTCACC.....................................................................................................................................................................1611.00100000001000000000
..........................................................................AGTC-CC----------CT--TGAAG-----GAGTG-G................................................................................................1911.00100000000001000000
........................................................................................................................................................................................CTACATCAACGCCAGCCCAGC---2111.00100000000001000000
...........................................................................................................................................CTTTC--CACCTTCAGATCGCCT..............................................2111.00100000001000000000
........................AAACTA--AGC-ACTCACCATGAAGTAC............................................................................................................................................................2511.00100000000001000000
........................AAACTA--AGC-ACTCAC......................................................................................................................................................................1511.00100000010000000000
....................................................................................................................................................................GTTACCCTGGCCCTGTT...........................1711.00100000000001000000
.............CA-AACCAACAAAACTA--AGC-ACT.........................................................................................................................................................................2211.00100000000001000000
...............................................................................................................................................................................CCTGTTCGCCTACATCAACGCCAGCCCA.....2811.00100000000000010000
....................................ACTCACCATGAAGTACCTGA........................................................................................................................................................2011.00100000001000000000
.......................................................................................................................TCTGATCCTCCGTATTTCCCC....................................................................2111.00100000001000000000
..........................................................................................................................................................GATCGCCTGTGTTACCCTGGCC................................2211.00100000000001000000
...................................................................................................................................................................TGTTACCCTGGCCCTGTTCGC........................2111.00100000010000000000
.............................................GAAGTACCTGGTAAGT...................................................................................................................................................1611.00100000000001000000
........................................................................................................................................................................CCCTGGCCCTGTTCGC........................1620.50100000001000000000
droSec2
TGATTGATTACCCCA-AACCAACAAAACTA--AGC-ACTCACCATGAAGTACCTGGTAAGTTGTGGT-------AGTC-CC----------CT--TGAAG-----GAGTG-GCAGCCA-TCTGATCCTCCGCATTTCCCCTTCC--CACCTTCAGATCGCCTGTGTTACCCTGGCCCTGTTCGCCTACATCAACGCCAGCCCAGTGTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................CGCATTTCCCCTTCC--CACCTTCAGATC..................................................2711.0011000
............................................................................................................................TCCTCCGCATTTCCCCTTCC--CACCTTCAG.....................................................2911.0011000
..............................................................................................................................................................GCCTGTGTTACCCTGGCCCTGTT...........................2311.0011000
..................................................................T-------AGTC-CC----------CT--TGAAG-----GAGTG-GCA..............................................................................................2211.0011000
..................................................................................................................................................................GTGTTACCCTGGCCCTGTTCGCC.......................2311.0011000
......................................................................................................................................................................TACCCTGGCCCTGTTCGCCT......................2011.0011000
droYak3
TGATTGATTACCCCA-AACCAACAAAACTA--AGC-ACTCACCATGAAGTACCTGGTAAGTTGTGGT-------AGTC-CC----------CA--AAAAG-----GAGTG-GCAGCCA-TCTGATCCTCCGGATTTCCCCTTTTCCCACCTTCAGATCGCCTGTGTTACCCTGGCCCTGTTCGCCTACATCAACGCCAGCCCAGC---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................CTGTTCGCCTACATCAACGCCAGCCCAGC---29128.0028000000000028
...............................................................................................................................................................................CCTGTTCGCCTACATCAACGCCAGCCCAGC---30125.0025000000000025
..........................................CATGAAGTACCTGGTAAGTTGTGGT-------A.....................................................................................................................................26122.0022000000000022
..................................................................................................................................................................GTGTTACCCTGGCCCTGTTC..........................20121.0021000000000021
.............................A--AGC-ACTCACCATGAAGTACCTGGTA......................................................................................................................................................2619.00900000000009
................................................................................................................................................................CTGTGTTACCCTGGCCCTGTTCGCCTACAT..................3019.00900000000009
..................................................................................................................................................................................GTTCGCCTACATCAACGCCAGCCCAG....2618.00800000000008
...........................................................................................................................................................ATCGCCTGTGTTACCCTGGCCCTGTTCGCC.......................3017.00700000000007
..........................................................................................................................................................GATCGCCTGTGTTACCCTGGCCCTGTTCGC........................3016.00600000000006
.............................................................................................................................................................CGCCTGTGTTACCCTGGCCCTGTTCGCCTAC....................3116.00600000000006
.....................................................................................................................................................................TTACCCTGGCCCTGTTCGCCTACATCAAC..............2916.00600000000006
................................................................................................................................................................................CTGTTCGCCTACATCAACGCCAGCCCA.....2714.00400000000004
..........................................................................................................................................................GATCGCCTGTGTTACCCTGGCCCTGTT...........................2713.00300000000003
..............................................................................................................................................................................CCCTGTTCGCCTACATCAACGCCAGCCCAG....3013.00300000000003
...........................................................................................................................................................ATCGCCTGTGTTACCCTGGCCCTGTT...........................2613.00300000000003
.........................................................................................................................................................AGATCGCCTGTGTTACCCTGGCCCTGTT...........................2813.00300000000003
..........................................................................................................................................................GATCGCCTGTGTTACCCTGGCCCTGT............................2612.00200000000002
......................................................................................................................................................................TACCCTGGCCCTGTTCGCCTA.....................2111.00101000000000
.................................GC-ACTCACCATGAAGTACCTGA........................................................................................................................................................2211.00101000000000
........TACCCCA-AACCAACAAAACTA--AGC-ACT.........................................................................................................................................................................2711.00100000000001
................................................................................................................................CCGGATTTCCCCTTTTCCCACCTTC.......................................................2511.00101000000000
..............................................................................................................................................................GCCTGTGTTACCCTGGCCCT..............................2011.00101000000000
..................................................................................................................................................................................GTTCGCCTACATCAACGCCAGCCCAGC---2711.00100000000001
.......TTACCCCA-AACCAACAAAACTA--AGC-............................................................................................................................................................................2511.00100000000001
....TGATTACCCCA-AACCAACAAAACTA--................................................................................................................................................................................2511.00101000000000
...........................................................................................................GTG-GCAGCCA-TCTGATCCTCCG.............................................................................2211.00101000000000
droEre2
TGATTGATTAACCCA-AACCAACAAAACTA--AGC-ACTCACCATGAAGTACCTGGTAAGTTGTGCG-------AGTC-CG----------CA--GAAAG-----GAGTG-GCAGCCA-TCTAATCCTCCGGTTTCCCCCTCTC--CACCATCAGATCGTCTGTGTTACCCTGGCCCTGTTCGCCTACATCAACGCCAGCCCAGT---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................AGATCGTCTGTGTTACCCTGGCCC...............................2418.0080000008
...............................................................................................................................................................TCTGTGTTACCCTGGCCCTGT............................2111.0011000000
..........................................................................................................................................................GATCGTCTGTGTTACCCTGGC.................................2111.0011000000
............................TA--AGC-ACTCACCATGAAGTA.............................................................................................................................................................2011.0011000000
...................CAACAAAACTA--AGC-ACTCACCATG..................................................................................................................................................................2411.0011000000

Generated: 05/19/2015 at 09:12 PM