ID:

dvi_18643

 Coordinate:

scaffold_13049:6379743-6379809 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.0 -8.1 -8.1 -8.0

Flybase annnotation

exon [dvir_GLEANR_12987:1]; CDS [Dvir\Cp18-cds]; exon [dvir_GLEANR_12987:2]; CDS [Dvir\Cp18-cds]; intron [Dvir\Cp18-in]

No Repeatable elements found

Sense Strand Reads

-----------------------------------###############-------------------------------------------------------------------##################################################
TAGCTACCCCACAAACTAAGCCAATTAGCCACAAAATGATGAAGTTCATGGTAAGTGCCAGCGCATCCTGCTGCCATCTGTAGCCTCCAACTTATTTGCCACAATTGTGTTCTTCAGTGCATTTTCGTCTGCGCCATCGCCGCCGTTTCGGCCAATGCGTACGGTCG
**************************************************.................((...((((..(((.((.............)).)))..)).)).....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 M047
female body
 SRR060676
9xArg_ovaries_total
 SRR060656
9x160_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060658
140_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060660
Argentina_ovaries_total
 SRR060673
9_ovaries_total
 SRR060688
160_ovaries_total
 SRR060654
160x9_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 M027
male body		 SRR1106729
mixed whole adult body
 V116
male body
....................................................................................................................GTGCATTTTCGTCTGCGCCATCGCCGCC....................... 28 0 1 10.00 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GTTTCGGCCAATGCGTACGGT.. 21 0 1 9.00 9 0 0 2 2 0 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CGCCGTTTCGGCCAATGCGTACGGT.. 25 0 1 8.00 8 6 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CCGCCGTTTCGGCCAATGCGT....... 21 0 1 7.00 7 0 3 1 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GCCGCCGTTTCGGCCAATGCGTACGGT.. 27 0 1 7.00 7 6 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................CGTTTCGGCCAATGCGTACG.... 20 0 1 6.00 6 0 0 0 0 2 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................TTCGGCCAATGCGTACGGTCG 21 0 1 6.00 6 0 0 2 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CGTCTGCGCCATCGCCGCCGT..................... 21 0 1 6.00 6 0 0 2 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TCGGCCAATGCGTACGGT.. 18 0 1 5.00 5 0 0 0 0 0 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TGCATTTTCGTCTGCGCCATCG............................ 22 0 1 5.00 5 0 1 0 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................ATCGCCGCCGTTTCGGCCAATGCGTACGGT.. 30 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TGTGCATTTTCGTCTGCGCC................................ 20 1 1 3.00 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CGGCCAATGCGTACGGTC. 18 0 1 3.00 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................ACAAAATGATGAAGTTCATGT.................................................................................................................... 21 1 1 3.00 3 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................CATTTTCGTCTGCGCCATCG............................ 20 0 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CGTTTCGGCCAATGCGTACGG... 21 0 1 3.00 3 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................TTCGTCTGCGCCATCGCCGCCGTTTCGGCC.............. 30 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTGCGCCATCGCCGCCGTTTCGGCCT............. 26 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GTTTCGGCCAATGCGTACGG... 20 0 1 3.00 3 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........ACAAACTAAGCCAATTAG........................................................................................................................................... 18 0 1 3.00 3 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TGTGCATTTTCGTCTGCGCCA............................... 21 1 1 3.00 3 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CGTCTGCGCCATCGCCGCCGTTTCGG................ 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GCCGTTTCGGCCAATGCGTACGGT.. 24 0 1 3.00 3 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TTTCGGCCAATGCGTACGGTCG 22 0 1 3.00 3 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GTGCATTTTCGTCTGCGCCATCGCCGC........................ 27 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTGCGCCATCGCCGCCGTTTCGGC............... 24 0 1 3.00 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................ATTAGCCACAAAATGATGAA............................................................................................................................ 20 0 1 2.00 2 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTTCGTCTGCGCCATCGCCG......................... 20 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................TTAGCCACAAAATGATGAAGT.......................................................................................................................... 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................CATTTTCGTCTGCGCCATCGC........................... 21 0 1 2.00 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CGTCTGCGCCATCGCCGCCGTTTCGGC............... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................CACAAAATGATGAAGTTCATG..................................................................................................................... 21 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................CATCGCCGCCGTTTCGGCCAA............ 21 0 1 2.00 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................CCACAAAATGATGAAGTTCATG..................................................................................................................... 22 0 1 2.00 2 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATGTGCATTTTCGTCTGCGCCATCGCCGC........................ 29 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................TAGCCACAAAATGATGAAGTT......................................................................................................................... 21 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GTCTGCGCCATCGCCGCCGT..................... 20 0 1 2.00 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TTCTTCAGTGCATTTTCGTCT..................................... 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TGCATTTTCGTCTGCGCCAT.............................. 20 0 1 2.00 2 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CCGCCGTTTCGGCCAATGCG........ 20 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................GTCTGCGCCATCGCCGCCGTTTC.................. 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CGGAGCCATCGCCGCCGTTTCGGCC.............. 25 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TCGGCCAATGCGTACGGTCG 20 0 1 2.00 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TCTGCGCCATCGCCGCCGTTTCGG................ 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................GCCAATGCGTACGGTCG 17 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GTTTCGGCCAATGCGTACGGA.. 21 1 1 2.00 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TCGTCTGCGCCATCGCCGCCGTTTCGGCC.............. 29 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................GCCATCGCCGCCGTTTCGGCCA............. 22 0 1 2.00 2 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CCGCCGTTTCGGCCAATGCGTT...... 22 1 1 2.00 2 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CGTTTCGGCCAATGCGTAC..... 19 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TTTCGGCCAATGCGTACGGTC. 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0
............................................................................................TATTTGCCACAATTGTGTTCTTCAG.................................................. 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................ATTAGCCACAAAATGAT............................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CTAAGCCAATTAGCCACAAAATGAT............................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................TGCGCCATCGCCGCCGTTTCG................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GCCGCCGTTTCGGCCACTGCGTACGGT.. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CCGTTTCGGCCAATGCGTACGGTC. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TGAAGTTCATGGTAAGTGCCAG.......................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GTGCATTTTCGTCTGCGCCA............................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GTCTGCGCCATCGCCGCCGTTTCGGC............... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........CAAACTAAGCCAATTAGCC......................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........CCACAAACTAAGCCAATTAGCCACA...................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CGGCCAATGCGTACGGTCG 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................ATTTTCGTCTGCGCCATCG............................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GTTTCGGCCAATGCGTACGGTC. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................ATCGCCGACGTTTCGGCCAATGAGTACGGT.. 30 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................ACAAAATGATGAAGTTCATGG.................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CGCCGCCGTTTCGGCCACTGCGTACGGT.. 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GCCGCCGTTTCGGGCAATGCGTACGGTC. 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CGTTTCGGCCAATGCGTACGGT.. 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTGCGCCATCGCCGCCGTTTC.................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................ATTAGCCACAAAATGATGAAG........................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TTCGTCTGCGCCATCGCCGCC....................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................ATTAGCCACAAAATGATGAAGTT......................................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................GCTGCCATCTGTAGCCTCCAAC............................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TTCATGGTAAGTGCCAGCG........................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTGCGCCATCGCCGCCGTTTCGGCC.............. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GTGCATTTTCGTCTGCGCCATCGCCCCC....................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CGCCGTTTCGGCCAATGCGTACG.... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CTAAGCCAATTAGCCACAAA.................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GTTTCGGCCAATGCGTACGGTCG 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GCCACAAAATGATGAAGTT......................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........CAAACTAAGCCAATTAGCCAC....................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GCATTTTCGTCTGCGCCCTCG............................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................CAATTAGCCACAAAATGATGA............................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TCGCCGCCGTTTCGGCCAAT........... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GTGCATTTTCGTCTGAGCCATCGCCGCC....................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TCGTCTGCGCCATCGCCGCCG...................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CTGCTGCCATCTGTAGCCTCCAAC............................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTGCGCCATCGCCGCCGTTT................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GTGCATTTTCGTCTGCGC................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CGCCGTTTCGGCCAATGCGTACGGTC. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................CCGCCGTTTCGGCCACTGCGT....... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................CGCCGTTGCGGCCGATGCGTACGGT.. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GCCGTTTCGGCCACTGCGTACGGT.. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................CATTTTCGTCTGCGCCATCGCTT......................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CCGTTTCGGCCAATGCGTAAA.... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TTTTCGTCTGCGCCATCGCCGC........................ 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GTGCATTTTCGTCTGCGCCAT.............................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GTGCATTTTCGTCGGCGCCATCGCCGCC....................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CGTCTGCGCCATCGCCGC........................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGCGCCATCGCCGCCGTTTCGGC............... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TTTTCGTCTGCGCCATCGCC.......................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................CTGCTGCCATCTGGAGCCTCC............................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................AGTTCATGGTAAGTGCCAGCG........................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TGCATTTTCGTCTGCGCCATCGCCGCC....................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................GCCACAATTGTGTTCTTCAG.................................................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....TACCCCACAAACTAAGCCAATTAGCC......................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CCGTTTCGGCCAATGCGTAC..... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CGCCGCCGTTTCGGCCAATGCGTACGGT.. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GCCGCCGTTTCGGCCAATGCGTACGGTC. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................ATTAGCCACAAAATGATGAAGTTCA....................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................AGCCACAAAATGATGAAGT.......................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................AGCCACAAAATGATGAAGTTC........................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TTAGCCACAAAATGATGAAG........................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................ATCGCCGCCGTTTCGGCCCATGCGTACGGT.. 30 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GCATTTTCGTCTGCGCCATCG............................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................AATTAGCCACAAACTGATGAAGTT......................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................TTAGCCACAAAATGATGAAGTT......................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GCCACAAAATGATGAAGTTC........................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CGCCGTTTCGGCCAATGCGTAC..... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................CCACAATTGTGTTCTTCAG.................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATGTGCATTTTCGTCTGCGCC................................ 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GTGCATTTTCGTCTGCGCCATC............................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................CTGGTAAGTGCCAGCGCATCCT.................................................................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TGAAGTTCATGGTAAGTG.............................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TTTTCGTCTGCGCCATCGT........................... 19 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TGTTCTTCAGTGCATTTTCG........................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CCGCCGTTTCGGCCCATGCGT....... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................CCACAAAATGATGAAGTT......................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................AGCCACAAAATGATGAAGTT......................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GTGCATTTTCGTCTGCGCC................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CGTTTCGGCCAATGCGTACGGTC. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................TAAGCCAATTAGCCACAAA.................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GTCTGCGCCATCGCCGCCGTTTCGGA............... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................CATGGTAAGTGCCAGCGCATCCTGC................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTCGGCCAATGCGTATGGTCG 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................ATCGCCGGCGTTTGGGCCAATGCGTACGGC.. 30 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CGCCGTTTCGGCCAATGCGTA...... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTTCGTCTGCGCCATCGCCGCCGTTTCGGCC.............. 31 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................CACAAAATGATGAAGTTCATGTGT.................................................................................................................. 24 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................CATTTTCGTCTGCGCCATCGCC.......................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................CATCGCCGCCGTTTCGGCCAAA........... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CGTCTGCGCCATCGCCGCCG...................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CATCGCCGCCGTTTCGGCCAATGC......... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....TACCCCACAAACTAAGCCAA............................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CCGCCGTTTCGGCCAATGCGTA...... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGCGCCATCGCCGCCGTTTCGGCCA............. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CATCGCCGCCGTTTCGGCCAAT........... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................ATTTTCGTCTGCGCCATCGCC.......................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CGCCGTTTCGGCCAATGCGT....... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............AAACTAAGCCAATTAGCCAC....................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................GTGCATTTTAGTCTGCGCCATCGCCGC........................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................CATGTGCATTTTCGTCTGCGC................................. 21 3 6 0.67 4 0 0 0 0 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................CAAAATGATGAAGTTCATGTGCA................................................................................................................. 23 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTGCGCCATCGCCGCCGA..................... 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................AAAATGATGAAGTTCATGTG................................................................................................................... 20 2 5 0.40 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TTCGTCTGCGCCATCCCGCC........................ 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TCTGCGACATCGACGCCGCTT................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................ATGTGCATTTTCGTCTGCG.................................. 19 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................CAAAATGATGAAGTTCATGTGC.................................................................................................................. 22 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................ATGATGAAGTTCATGTGA.................................................................................................................. 18 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................GTTTTCGTCTGCGCCGTC............................. 18 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................CCAGCGCATCCTGGGGC............................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................ATGTGCATTTTCATCTGCGC................................. 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................CGATGAAGTTCAAGGTCAG................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ATCGATGGGGTGTTTGATTCGGTTAATCGGTGTTTTACTACTTCAAGTACCATTCACGGTCGCGTAGGACGACGGTAGACATCGGAGGTTGAATAAACGGTGTTAACACAAGAAGTCACGTAAAAGCAGACGCGGTAGCGGCGGCAAAGCCGGTTACGCATGCCAGC
**************************************************.................((...((((..(((.((.............)).)))..)).)).....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060658
140_ovaries_total
 SRR060656
9x160_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060688
160_ovaries_total
 SRR060660
Argentina_ovaries_total
 SRR060654
160x9_ovaries_total
 SRR060673
9_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060667
160_females_carcasses_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 V053
head
 SRR060655
9x160_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 V047
embryo
 SRR060663
160_0-2h_embryos_total
...........................................................................................................................................GGCGGCAAAGCCGGTTACGCA....... 21 0 1 18.00 18 7 3 3 1 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................TAGCGGCGGCAAAGCCGGTTA........... 21 0 1 12.00 12 1 10 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GTAGCGGCGGCAAAGCCGGTT............ 21 0 1 10.00 10 2 1 2 0 1 0 2 0 0 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................GCGGCAAAGCCGGTTACGCAT...... 21 0 1 8.00 8 0 0 1 2 4 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..CGATGGGGTGTTTGATTCGGTT............................................................................................................................................... 22 0 1 7.00 7 0 5 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GGCAAAGCCGGTTACGCATGC.... 21 0 1 6.00 6 1 0 1 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0
..CGATGGGGTGTTTGATTCGGT................................................................................................................................................ 21 0 1 6.00 6 1 4 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................GGTTAATCGGTGTTTTACTAC.............................................................................................................................. 21 0 1 6.00 6 1 0 3 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GGCGGCAAAGCCGGTTACGC........ 20 0 1 5.00 5 4 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...GATGGGGTGTTTGATTCGGTT............................................................................................................................................... 21 0 1 5.00 5 0 2 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0
......GGGGTGTTTGATTCGGTTAAT............................................................................................................................................ 21 0 1 4.00 4 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................AGCGGCGGCAAAGCCGGTTAC.......... 21 0 1 4.00 4 0 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........GGTGTTTGATTCGGTTAATC........................................................................................................................................... 20 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TGGCAAAGCCGGTTACGCAT...... 20 1 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GATTCGGTTAATCGGTGTTTT................................................................................................................................... 21 0 1 3.00 3 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..CGATGGGGTGTTTGATTC................................................................................................................................................... 18 0 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CGGTGTTTTACTACTTCAAGT....................................................................................................................... 21 0 1 3.00 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AAGCCGGTTACGCATGCCAGC 21 0 1 3.00 3 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................CACGTAAAAGCAGACGCGGTA.............................. 21 0 1 3.00 3 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GGTTAATCGGTGTTTTACTA............................................................................................................................... 20 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GGTAGCGGCGGCAAAGCCGGT............. 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................AAAAGCAGACGCGGTAGCGGC......................... 21 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....TGGGGTGTTTGATTCGGTTAAT............................................................................................................................................ 22 0 1 2.00 2 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GGCGGCAAAGCCGGTTACGCAT...... 22 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TGGCGGCGGCAAAGCCGGTTA........... 21 1 1 2.00 2 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................ACGGGGTAGCGGCGGCAAAGC................. 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CGTAAAAGCAGACGCGGTAGC............................ 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................AGAAGTCACGTAAAAGCAGACGC.................................. 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................GCGTAGGACGACGGTAGACAT..................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....ATGGGGTGTTTGATTCGGTTA.............................................................................................................................................. 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GCGGCGGCAAAGCCGGTTACG......... 21 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TAATCGGTGTTTTACTACTTC........................................................................................................................... 21 0 1 2.00 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TGCGGCAAAGCCGGTTACGCAT...... 22 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GTCGCGGCGGCAAAGCCGGTT............ 21 1 1 2.00 2 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TCGCGGCGGCAAAGCCGGTTA........... 21 1 1 2.00 2 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.TCGATGGGGTGTTTGATTC................................................................................................................................................... 19 0 1 2.00 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CGGCGGCAAAGCCGGTTACGC........ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................GCGGCAAAGCCGGTTACGCA....... 20 0 1 2.00 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TAGCGGCGGCAAAGCCGGTT............ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....ATGGGGTGTTTGATTCGGT................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..CGATTGGGTGTTTGATTCGGT................................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GTAAAAGCAGACTCGGTA.............................. 18 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................GGTTAATCGGTGTTTTACTACTT............................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TGCGGCAAAGCCGGTTACGCA....... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..CGATGGGGTGTTTGATTCGG................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CACGTAAAAGCAGACGCGG................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................GGTCGCGTAGGACGACGGTAG......................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................GGTTGAATAAACGGTGTTAAC............................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CACGTAAAAGCAGACGCGGTAGC............................ 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GCAGACGCGGTAGCGGCGGC...................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CGGTTAATCGGTGTTTTACTA............................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................GGTGTTTTACTACTTCAAGTA...................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TCGTTTAATCGGTGTTTTACT................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.TCGATGGGGTGTTTGATTCG.................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GGGCGGCAAAGCCGGTTACGC........ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....ATGGGGTGTTTGATCCGGTTA.............................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................ACCACGGTCGCGTAGGACGACGG............................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................CGGCAAAGCCGGTTACGCATG..... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GTAAAAGCAGACGCGGTA.............................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CACGTAAAAGCAGACGCGGT............................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CACGTAAAAGCAGACGCGGTAG............................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TTCGGTTAATCGGTGTTTTA.................................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TTGATTCGGTTAATCGGTGTT..................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..CGATGGGGTGTTTGATTCGGTTAAT............................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ATCGATGGGGTGTTTGATTC................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....ATGGGGTTTTTGATTCGGT................................................................................................................................................ 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTCGGCAAAGCCGGTTACGCA....... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................AATCGGTGTTTTACTACTTCAA......................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......GGGGTGTTTGATTCGGTTAATC........................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GATTCGTTTAATCGGTGTTTT................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..CGATGGGGTGTTTGATTCG.................................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...GATGGGGTGTTTGATTCGGTTA.............................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CGGCGGCGAAGCCGGTTACGC........ 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AGACGCGGTAGCGGCTGCAA.................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TGGGGTGTTTGATTCGGTTAA............................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................GGTTAATCGGTGTTTTACTACT............................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TGTTTGATTCGGTTAATCGGT........................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............TTTGATTCGGTTAATCGGTGT...................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................CGCGGTAGCGGCGGCAAAGC................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................AGCGGCGGCAAAGCCGGTTA........... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................GCAAAGCCGGTTACGCATGC.... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......GGGGTGTTTGATTCGGTT............................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..TGATGGGGTGTTTGATTC................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ACGTAAAAGCAGACGCGGTA.............................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...GATGGGGTGTTTGATTCGGT................................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CGGTGTTTTACTACTTCAAGTA...................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TCGGTGTTTTACTACTTCAAG........................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................GCAAAGCCGGTTGCGCATGC.... 20 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....ATGGGGTGTTTGATTCGGTT............................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................TCGGCGGCAAAGCCGGTTACGC........ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TGGTAGCGGCGGCAAAGCCGGTT............ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................ACGCGGTAGCGGCGGCAAAGC................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..TGATGGGGTGTTTGATTCGGT................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TGATTCGGTTAATCGGTGT...................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................TTCAAGTAACATTCACGGTCG......................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CGGCGGCAAAGCCGGTTACG......... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.TCGATGGGGTGTTTGATT.................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ATCGATGGGGTGTTTGATT.................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GTTAATCGGTGTTTTACTACT............................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....ATGGGGTGTTTGATTCGGTTAA............................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GTTAATCGGTGTTTTACTA............................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......TGGTGTTTGATTCGGTTAATC........................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................GCGGCAAAGCCGGTTACGCATG..... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ATCGATGGGGTGTTTGATTCG.................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TGCGGCAAAGCCGGTTACGC........ 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TCACGTAAAAGCAGACGCGGT............................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGTTTTACTACTTCAAGTACCA................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................CGCGGTAGCGGCGGCAAAGCC................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................GGGTTAACACGAGAAGTCAGGT.............................................. 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................AAAAGTCGAGGCGGTAGCGGC......................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............GTTTCGTTTAATCGGTGTTTT................................................................................................................................... 21 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CCAGTCACGGTCGCGAAG.................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................TTACTCGGTGTTCTACTAC.............................................................................................................................. 19 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................GACGGTAGACATGGGTGGGT............................................................................. 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................AGCAGACCCGGTAGCGAGG........................ 19 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................GACCGTAGAGATCGGAGTTT............................................................................. 20 3 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TGAGGTGTTTCAGTCGGTTA.............................................................................................................................................. 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:6379693-6379859 + dvi_18643 TAGCTA---CCCC---------ACAAACTA---AGCCAATTAG-CC-ACAAAATGATGAAGTTCATGGTAAGTGCCAGC----------------------------------GCATCCTGC--------------TGCC-----------------------------ATCTGTAGCCTCC--------------------AACTTAT-TTG----------------C--------------------------------------------CACAATTGTG-TTCTTCAGTGCATTTTCGTCTGCGCCATCGCCGCCGTTTCGGCCAATGCGTACGGT------CG--
droMoj3 scaffold_6680:4700699-4700877 + TAGCAG---CCCA---A---CTA--AACCCAAACCCAACTAAG-CCATCAAAATGATGAAGTTCATGGTAAGTGTCTGC----------------------------------GCATCCTGCCCCA----GTATCCCTCC-----------------------------AG-----GCCA--------------------TTGGCTCAT-CTT------------------CCCACT------------------------------ATTC----------TTA-TTCTGCAGTGCATTTTCGTCTGCGCCCTCGCCGCTGTCTCGGCCAGTTCGTACAAT------CG--
droGri2 scaffold_15110:6361376-6361562 - TAACTC-TACCCA---A---AGACAAACTAA--CACCAACTATCCAAATAAAATGATGAAGTTCATGGTAAGTGTCTGC----------------------------------GAATCCTGCAC------GCATCCCATT-----------------------------TG-----GCAACC--------------A-G-TT-GCTTAT-TTT----------------T-CCCAATCCAC--------------------------A-----------TTATT-TTCTGCAGTGCCTTTTCGTTTGCGCCATCGCCGCTGTTTCTGCTTCCGACTATGGTAA--------
droWil2 scf2_1100000004511:8141501-8141681 - TCCATT----TCATTGACTAAGACAAAAACA--A-AAAACAAT-TA-CAAAAATGATGAAGTTCATGGTAAGAGGAAAA----------------------------------AT---AATA--------------A--A-----------------------------TTTCGAATCCTTT--------------------AACTTAA-CTAACGAAATATTCCCT-------------------------------------------------CGCTTGACTCTCTTTAGTGCATTTTCGTTTGCGCCGTGGCTGCTGTTTCTGCCT------ATGGTGC---TCGTG
dp5 XR_group8:8871194-8871375 - TACCCA----GCA---A-CCAGACAAACCCA--AACAAACAAA-CC-ACAAAATGATGAAGTTCATGGTAAGTCCCCGC----------------------------------ACAGCCAGC--------------CCTC-----------------------------TACCGGAGCCCCA--------------------AACTGAT-CTA-----------------------------------------------------GATCCTTCCTCTGCTCCG-CCCCTCAGTGCATTTTCATCTGCGCCGTGGCTGCAGTTTCGGCCAGCGGCTATGGAGG---TCG--
droPer2 scaffold_50:334862-335043 + TACCCA----GCA---A-CCAGACAAACCCA--AACAAACAAA-CC-ACAAAATGATGAAGTTCATGGTAAGTCCCCGC----------------------------------ACAGCCAGC--------------CCTC-----------------------------TACCGGAGCCCCA--------------------AACTGAT-CTA-----------------------------------------------------GATCCTTCCTCTGCTCCG-CCCCTCAGTGCATTTTCATCTGCGCCGTGGCTGCAGTTTCGGCCAGCGGCTATGGAGG---TCG--
droAna3 scaffold_13337:7920209-7920379 - TACCTTCTTCTCA---A---CGATCAACTA---ACCAAT--------TCAAAATGATGAAGTTCATGGTGAGTCCCAGGAATGA------------AGA--------------GC-----------------ATCCTTTC-----------------------------CA------------------------------------------GCGGAATACTAACTTGTG------------------------------------A-----------TTATCTTCCCCCAGTGCATTTGCATTTGCGCCATTGCTGCTGCTTCGGCGAGTCCTTATGGCGGAAACCG--
droBip1 scf7180000396541:76592-76761 - TACCTTCTTCTCA---A---CGATCAACTA---ACCAAT--------TCAAAATGATGAAGTTCATGGTGAGTCTCAGGAACAA------------AAA--------------GC-----------------ATCCTTTC-----------------------------CG------------------------------------------GCGGAATACTAACTTGTG----------------------------------ATAT-------------CT-TCCCTTAGTGCATTTGCATTTGCGCCATCGCTGCTGCTTCGGCGAGTCCTTATGGCGGAAACCG--
droKik1 scf7180000302474:247135-247358 - TACTTT---CGCA---A---CGATCAACTA---ACCAACTCAG-CC-TCAGAATGATGAAGTTCATGGTGAGTTTCAACAGTCAATAT------AAATGACAGATCCTTGAGA---TCCTGAATCT----CTATACCTC------------------------------------------CCACTACTCAAAACTA----------------G-GGAATACAAAATTA---------------------------------ATGATGATT-----TTGTTCTA-CTCTTTAGTGCCTCTGCATCTGCGCCATTGCTGCCGCTTCGGCCAACCCCTATGGAGGATCTCG--
droRho1 scf7180000757772:2504-2598 + AGTCCC---C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------ATCTAAT------------------------------------------------------TGGTATTT-----TTCTTGAT-TCCTTTAGTGCATCTGCCTCTGCGCCATTGCCGCTGTTTCGGCCAACTCCTATGGAAGTGCCCG--
droTak1 scf7180000414072:41216-41274 - TACCTT---CGCA---T---CGATCAACTA---ACCAACTCAG-CC-TCAGAATGATGAAGTTCATGGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3L:8719897-8720176 + TACCTT---CGCA---T---CGATCAACTA---ACCAACTCAG-CC-TCAGAATGATGAAGTTCATGGTAAGCCTTAAGTTCCAATATTGTTTCTATTGACACCTCA---------ACTGAGTCCAGTATG-ATCCTTTCAATAAAATATAACTACATATTATAATAATTG-----GATAAT--------------ATGATTGGATCTTTCTT----------------T-TCTAATACACTTCAGTCTAAACCCAAATTAATTGAATTTT-----TTCTTGAA-TCCCTTAGTGCATCTGCCTCTGCGCCATCTCTGCCGTTTCGGCCAACTCCTACGGACG---TTC--
droSim2 3l:8509619-8509681 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAA-TCCCTTAGTGCATCTGCCTCTGCGCCATCTCTGCCGTTTCGGCCAACGCCTACGGACG--------
droSec2 scaffold_0:997958-998020 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAA-TCCCTTAGTGCATCTGCCTCTGCGCCATCTCTGCCGTTTCGGCCAACGCCTACGGACG--------
droYak3 3L:3190514-3190591 - TACCTT---CGCA---T---CGATCAACTA---ACCAACTCAG-CC-TCAGAATGATGAAGTTCATGGTAAGTCTTAAATTC------------TACTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACC----------------
droEre2 scaffold_4784:5322599-5322661 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAA-TCCCTTAGTGCATCTGCCTCTGCGCCATCTCTGCCGTTTCGGCCAACGGCTATGGACG--------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TAGCTA---CCCC---------ACAAACTA---AGCCAATTAG-CC-ACAAAATGATGAAGTTCATGGTAAGTGCCAGC----------------------------------GCATCCTGC--------------TGCC-----------------------------ATCTGTAGCCTCC--------------------AACTTAT-TTG----------------C--------------------------------------------CACAATTGTG-TTCTTCAGTGCATTTTCGTCTGCGCCATCGCCGCCGTTTCGGCCAATGCGTACGGT------CG--SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................GTGCATTTTCGTCTGCGCCATCGCCGCC...............................28110.00100000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................GTTTCGGCCAATGCGTACGGT------....2119.009000000203000000000000000022000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................CGCCGTTTCGGCCAATGCGTACGGT------....2518.008000000000000000000000000000000000020000000000000000000000000006
...........................................................................................................................................................................................................................................................................................................................CCGCCGTTTCGGCCAATGCGT...............2117.007003000201000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................GCCGCCGTTTCGGCCAATGCGTACGGT------....2717.007000000000000000000000000000000000001000000000000000000000000006
...............................................................................................................................................................................................................................................................................................................................CGTTTCGGCCAATGCGTACG............2016.006000010002000000000000000100000000020000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TTCGGCCAATGCGTACGGT------CG--2116.006000000200000000000000001102000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CGTCTGCGCCATCGCCGCCGT.............................2116.006000000100000000000000000112100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................TCGGCCAATGCGTACGGT------....1815.005000000002030000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TGCATTTTCGTCTGCGCCATCG....................................2215.005001000200000000000000000110000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................ATCGCCGCCGTTTCGGCCAATGCGTACGGT------....3014.004000000000000000000000000000000000000000000000000000000000000004
....................................................................................................................................................................................................................................................................................................................................CGGCCAATGCGTACGGT------C...1813.003000000003000000000000000000000000000000000000000000000000000000
...............................................ACAAAATGATGAAGTTCATGT...........................................................................................................................................................................................................................................................................................2113.003000000100000000000000000101000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CATTTTCGTCTGCGCCATCG....................................2013.003001000000000000000000000002000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................CGTTTCGGCCAATGCGTACGG...........2113.003000000000000000000000000200000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TTCGTCTGCGCCATCGCCGCCGTTTCGGCC......................3013.003000000000000000000000000000000000000000000000000000000000000003
................................................................................................................................................................................................................................................................................................................CTGCGCCATCGCCGCCGTTTCGGCCT.....................2613.003000000000000000000000000000000000000000000000000000000000000003
................................................................................................................................................................................................................................................................................................................................GTTTCGGCCAATGCGTACGG...........2013.003000000001010000000000000000100000000000000000000000000000000000
......................ACAAACTA---AGCCAATTAG-...................................................................................................................................................................................................................................................................................................................1813.003000000000000000000000000101100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CGTCTGCGCCATCGCCGCCGTTTCGG........................2613.003000000000000000000000000000000000000000000000000000000000000003
.............................................................................................................................................................................................................................................................................................................................GCCGTTTCGGCCAATGCGTACGGT------....2413.003000000000000000000000000000000000010000000000000000000000000002
.................................................................................................................................................................................................................................................................................................................................TTTCGGCCAATGCGTACGGT------CG--2213.003000000000000000000000000011100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................GTGCATTTTCGTCTGCGCCATCGCCGC................................2713.003000000000000000000000000000000000000000000000000000000000000003
................................................................................................................................................................................................................................................................................................................CTGCGCCATCGCCGCCGTTTCGGC.......................2413.003001000000000000000000000000000001000000000000000000000000000001
......................................ATTAG-CC-ACAAAATGATGAA...................................................................................................................................................................................................................................................................................................2012.002000000000000000000000000010000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TTTCGTCTGCGCCATCGCCG.................................2012.002001000000000000000000000000000000000001000000000000000000000000
.......................................TTAG-CC-ACAAAATGATGAAGT.................................................................................................................................................................................................................................................................................................2112.002001000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CATTTTCGTCTGCGCCATCGC...................................2112.002000000000000000000000000101000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CGTCTGCGCCATCGCCGCCGTTTCGGC.......................2712.002000000000000000000000000000000000000000000000000000000000000002
.............................................C-ACAAAATGATGAAGTTCATG............................................................................................................................................................................................................................................................................................2112.002000000000000000000000000001000000000001000000000000000000000000
......................................................................................................................................................................................................................................................................................................................CATCGCCGCCGTTTCGGCCAA....................2112.002000000000000000000000000100100000000000000000000000000000000000
............................................CC-ACAAAATGATGAAGTTCATG............................................................................................................................................................................................................................................................................................2212.002000000000000000000000000010100000000000000000000000000000000000
........................................TAG-CC-ACAAAATGATGAAGTT................................................................................................................................................................................................................................................................................................2112.002001000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GTCTGCGCCATCGCCGCCGT.............................2012.002000000001010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................TTCTTCAGTGCATTTTCGTCT.............................................2112.002000000200000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TGCATTTTCGTCTGCGCCAT......................................2012.002001000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................CCGCCGTTTCGGCCAATGCG................2012.002001000000000000000000000000000000000001000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GTCTGCGCCATCGCCGCCGTTTC..........................2312.002000000000000000000000000000000000000000000000000000000000000002
...................................................................................................................................................................................................................................................................................................................................TCGGCCAATGCGTACGGT------CG--2012.002000000001000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TCTGCGCCATCGCCGCCGTTTCGG........................2412.002000000000000000000000000000000000000000000000000000000000000002
......................................................................................................................................................................................................................................................................................................................................GCCAATGCGTACGGT------CG--1712.002000000000000000000000000000000000000000000000000000000000000002
................................................................................................................................................................................................................................................................................................................................GTTTCGGCCAATGCGTACGGA------....2112.002000000000020000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TCGTCTGCGCCATCGCCGCCGTTTCGGCC......................2912.002000000000000000000000000000000000010000000000000000000000000001
....................................................................................................................................................................................................................................................................................................................GCCATCGCCGCCGTTTCGGCCA.....................2212.002001000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................CCGCCGTTTCGGCCAATGCGTT..............2212.002001000000000000000000001000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................CGTTTCGGCCAATGCGTAC.............1912.002001000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TTTCGGCCAATGCGTACGGT------C...2112.002000010000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................................................TAT-TTG----------------C--------------------------------------------CACAATTGTG-TTCTTCAG..........................................................2512.002002000000000000000000000000000000000000000000000000000000000000
......................................ATTAG-CC-ACAAAATGAT......................................................................................................................................................................................................................................................................................................1711.001000000000000000000000000000000000000000000000000000000000000001
...........................CTA---AGCCAATTAG-CC-ACAAAATGAT......................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TGCGCCATCGCCGCCGTTTCG.........................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CCGTTTCGGCCAATGCGTACGGT------C...2411.001000000000000000000000000001000000000000000000000000000000000000
........................................................TGAAGTTCATGGTAAGTGCCAG.................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................GTGCATTTTCGTCTGCGCCA.......................................2011.001000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GTCTGCGCCATCGCCGCCGTTTCGGC.......................2611.001000000000000000000000000000000000000000000000000000000000000001
.......................CAAACTA---AGCCAATTAG-CC-................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
...........CC---------ACAAACTA---AGCCAATTAG-CC-ACA.............................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................CGGCCAATGCGTACGGT------CG--1911.001000000000000000000000000000000000000001000000000000000000000000
........................................................................................................................................................................................................................................................................................................ATTTTCGTCTGCGCCATCG....................................1911.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................GTTTCGGCCAATGCGTACGGT------C...2211.001000000000000000000000000000000000010000000000000000000000000000
...............................................ACAAAATGATGAAGTTCATGG...........................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................CGTTTCGGCCAATGCGTACGGT------....2211.001000000001000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................CTGCGCCATCGCCGCCGTTTC..........................2111.001000000000000000000000000000100000000000000000000000000000000000
......................................ATTAG-CC-ACAAAATGATGAAG..................................................................................................................................................................................................................................................................................................2111.001000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TTCGTCTGCGCCATCGCCGCC...............................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................ATTAG-CC-ACAAAATGATGAAGTT................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................GC--------------TGCC-----------------------------ATCTGTAGCCTCC--------------------AAC..................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000001
.............................................................TTCATGGTAAGTGCCAGC----------------------------------G.............................................................................................................................................................................................................................................1911.001000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................CTGCGCCATCGCCGCCGTTTCGGCC......................2511.001000000000000000000000000000000000000000000000000000000000000001
............................................................................................................................................................................................................................................................................................................................CGCCGTTTCGGCCAATGCGTACG............2311.001000000000000000000000000001000000000000000000000000000000000000
...........................CTA---AGCCAATTAG-CC-ACAAA...........................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000001
................................................................................................................................................................................................................................................................................................................................GTTTCGGCCAATGCGTACGGT------CG--2311.001000000001000000000000000000000000000000000000000000000000000000
..........................................G-CC-ACAAAATGATGAAGTT................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
.......................CAAACTA---AGCCAATTAG-CC-AC..............................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....................................CAATTAG-CC-ACAAAATGATGA....................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TCGCCGCCGTTTCGGCCAAT...................2011.001000000000000000000000000000000000000000000000000000000000000001
............................................................................................................................................................................................................................................................................................................TCGTCTGCGCCATCGCCGCCG..............................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................CTGC--------------TGCC-----------------------------ATCTGTAGCCTCC--------------------AAC..................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000001
................................................................................................................................................................................................................................................................................................................CTGCGCCATCGCCGCCGTTT...........................2011.001000000000000000000000000100000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................GTGCATTTTCGTCTGCGC.........................................1811.001000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................CGCCGTTTCGGCCAATGCGTACGGT------C...2611.001000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CATTTTCGTCTGCGCCATCGCTT.................................2311.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CCGTTTCGGCCAATGCGTAAA............2111.001000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TTTTCGTCTGCGCCATCGCCGC................................2211.001000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................GTGCATTTTCGTCTGCGCCAT......................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CGTCTGCGCCATCGCCGC................................1811.001000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TGCGCCATCGCCGCCGTTTCGGC.......................2311.001000000000000000000000000000000000000000000000000000000000000001
.........................................................................................................................................................................................................................................................................................................TTTTCGTCTGCGCCATCGCC..................................2011.001000000000000000000000000000000000000001000000000000000000000000
...........................................................AGTTCATGGTAAGTGCCAGC----------------------------------G.............................................................................................................................................................................................................................................2111.001000000100000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TGCATTTTCGTCTGCGCCATCGCCGCC...............................2711.001000000000000000000000000000000000000000000000000000000000000001
....................................................................................................................................................................................................................G----------------C--------------------------------------------CACAATTGTG-TTCTTCAG..........................................................2011.001000000000000000000000000000100000000000000000000000000000000000
....TA---CCCC---------ACAAACTA---AGCCAATTAG-CC-................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CCGTTTCGGCCAATGCGTAC.............2011.001000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGCCGCCGTTTCGGCCAATGCGTACGGT------....2811.001000000000000000000000000000000000000000000000000000000000000001
..........................................................................................................................................................................................................................................................................................................................GCCGCCGTTTCGGCCAATGCGTACGGT------C...2811.001000000000000000000000000000000000000000000000000000000000000001
......................................ATTAG-CC-ACAAAATGATGAAGTTCA..............................................................................................................................................................................................................................................................................................2511.001000000000000000000000000001000000000000000000000000000000000000
.........................................AG-CC-ACAAAATGATGAAGT.................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000100000000000000000000000000000000000
.........................................AG-CC-ACAAAATGATGAAGTTC...............................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.......................................TTAG-CC-ACAAAATGATGAAG..................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................GCATTTTCGTCTGCGCCATCG....................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................TTAG-CC-ACAAAATGATGAAGTT................................................................................................................................................................................................................................................................................................2211.001000000100000000000000000000000000000000000000000000000000000000
..........................................G-CC-ACAAAATGATGAAGTTC...............................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................CGCCGTTTCGGCCAATGCGTAC.............2211.001000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................C--------------------------------------------CACAATTGTG-TTCTTCAG..........................................................1911.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................GTGCATTTTCGTCTGCGCCATC.....................................2211.001000000000000000000000000001000000000000000000000000000000000000
........................................................TGAAGTTCATGGTAAGTG.....................................................................................................................................................................................................................................................................................1811.001000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TTTTCGTCTGCGCCATCGT...................................1911.001000000000000000000000000100000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TG-TTCTTCAGTGCATTTTCG................................................2011.001001000000000000000000000000000000000000000000000000000000000000
............................................CC-ACAAAATGATGAAGTT................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000001000000000000000000000000000000000000
.........................................AG-CC-ACAAAATGATGAAGTT................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................GTGCATTTTCGTCTGCGCC........................................1911.001000000000010000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................CGTTTCGGCCAATGCGTACGGT------C...2311.001000000000000000000000000000000000001000000000000000000000000000
............................TA---AGCCAATTAG-CC-ACAAA...........................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GTCTGCGCCATCGCCGCCGTTTCGGA.......................2611.001000000000000000000000000000000000000000000000000000000000000001
...............................................................CATGGTAAGTGCCAGC----------------------------------GCATCCTGC--------------.......................................................................................................................................................................................................................2511.001000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................CGCCGTTTCGGCCAATGCGTA..............2111.001000000100000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TTTCGTCTGCGCCATCGCCGCCGTTTCGGCC......................3111.001000000000000000000000000000000000000000000000000000000000000001
.............................................C-ACAAAATGATGAAGTTCATGTGT.........................................................................................................................................................................................................................................................................................2411.001000010000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CATTTTCGTCTGCGCCATCGCC..................................2211.001000010000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................CATCGCCGCCGTTTCGGCCAAA...................2211.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CGTCTGCGCCATCGCCGCCG..............................2011.001000000000000000000000000010000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................CATCGCCGCCGTTTCGGCCAATGC.................2411.001000000000000000000000000000000000010000000000000000000000000000
....TA---CCCC---------ACAAACTA---AGCCAA........................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................CCGCCGTTTCGGCCAATGCGTA..............2211.001000000000000000000000001000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TGCGCCATCGCCGCCGTTTCGGCCA.....................2511.001000000000000000000000000000000000000000000000000000000000000001
......................................................................................................................................................................................................................................................................................................................CATCGCCGCCGTTTCGGCCAAT...................2211.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................ATTTTCGTCTGCGCCATCGCC..................................2111.001000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................CGCCGTTTCGGCCAATGCGT...............2011.001001000000000000000000000000000000000000000000000000000000000000
........................AAACTA---AGCCAATTAG-CC-AC..............................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................................................................................................................................................CTGCGCCATCGCCGCCGA.............................1820.501000000000000000000000000000000000000000000000000000000000000001
.................................................AAAATGATGAAGTTCATGTG..........................................................................................................................................................................................................................................................................................2050.402000000002000000000000000000000000000000000000000000000000000000
................................................CAAAATGATGAAGTTCATGTGC.........................................................................................................................................................................................................................................................................................2270.141001000000000000000000000000000000000000000000000000000000000000
droMoj3
TAGCAG---CCCA---A---CTA--AACCCAAACCCAACTAAG-CCATCAAAATGATGAAGTTCATGGTAAGTGTCTGC----------------------------------GCATCCTGCCCCA----GTATCCCTCC-----------------------------AG-----GCCA--------------------TTGGCTCAT-CTT------------------CCCACT------------------------------ATTC----------TTA-TTCTGCAGTGCATTTTCGTCTGCGCCCTCGCCGCTGTCTCGGCCAGTTCGTACAAT------CG--SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................TCAT-CTT------------------CCCACT------------------------------ATTC----------TTA-TTCTGCAG..........................................................2811.001100000
droGri2
TAACTC-TACCCA---A---AGACAAACTAA--CACCAACTATCCAAATAAAATGATGAAGTTCATGGTAAGTGTCTGC----------------------------------GAATCCTGCAC------GCATCCCATT-----------------------------TG-----GCAACC--------------A-G-TT-GCTTAT-TTT----------------T-CCCAATCCAC--------------------------A-----------TTATT-TTCTGCAGTGCCTTTTCGTTTGCGCCATCGCCGCTGTTTCTGCTTCCGACTATGGTAA--------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TCCATT----TCATTGACTAAGACAAAAACA--A-AAAACAAT-TA-CAAAAATGATGAAGTTCATGGTAAGAGGAAAA----------------------------------AT---AATA--------------A--A-----------------------------TTTCGAATCCTTT--------------------AACTTAA-CTAACGAAATATTCCCT-------------------------------------------------CGCTTGACTCTCTTTAGTGCATTTTCGTTTGCGCCGTGGCTGCTGTTTCTGCCT------ATGGTGC---TCGTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................ATTCCCT-------------------------------------------------CGCTTGACTCTCTTTAG..........................................................2412.00202000
................................................................................................................................................................................................................................................................................................................TTGCGCCGTGGCTGCTGT.............................1811.00101000
...................................................................................................................................................................................................................................................................................................................CGCCGTGGCTGCTGTTTCTGC.......................2111.00101000
.................................................................................................................................................................................................................................CT-------------------------------------------------CGCTTGACTCTCTTTAG..........................................................1911.00101000
.........................................................................................................................................................................................................................................................................................................................GGCTGCTGTTTCTGCCT------ATG............2011.00101000
..........................................................................................................................................................................................................................ATATTCCCT-------------------------------------------------CGCTTGACTCTCTTTAG..........................................................2611.00101000
..................................................................................................................................................................................................................................................................................................................GCGCCGTGGCTGCTGTTTCTGCCT------ATG............2711.00101000
dp5
TACCCA----GCA---A-CCAGACAAACCCA--AACAAACAAA-CC-ACAAAATGATGAAGTTCATGGTAAGTCCCCGC----------------------------------ACAGCCAGC--------------CCTC-----------------------------TACCGGAGCCCCA--------------------AACTGAT-CTA-----------------------------------------------------GATCCTTCCTCTGCTCCG-CCCCTCAGTGCATTTTCATCTGCGCCGTGGCTGCAGTTTCGGCCAGCGGCTATGGAGG---TCG--SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................TCATCTGCGCCGTGGCTGCAGTT............................2311.0010100000000
droPer2
TACCCA----GCA---A-CCAGACAAACCCA--AACAAACAAA-CC-ACAAAATGATGAAGTTCATGGTAAGTCCCCGC----------------------------------ACAGCCAGC--------------CCTC-----------------------------TACCGGAGCCCCA--------------------AACTGAT-CTA-----------------------------------------------------GATCCTTCCTCTGCTCCG-CCCCTCAGTGCATTTTCATCTGCGCCGTGGCTGCAGTTTCGGCCAGCGGCTATGGAGG---TCG--SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................TTCATCTGCGCCGTGGCTGCA...............................2111.001010000
droAna3
TACCTTCTTCTCA---A---CGATCAACTA---ACCAAT--------TCAAAATGATGAAGTTCATGGTGAGTCCCAGGAATGA------------AGA--------------GC-----------------ATCCTTTC-----------------------------CA------------------------------------------GCGGAATACTAACTTGTG------------------------------------A-----------TTATCTTCCCCCAGTGCATTTGCATTTGCGCCATTGCTGCTGCTTCGGCGAGTCCTTATGGCGGAAACCG--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................CATTTGCATTTGCGCCATTGCTGC................................2411.001100000
.......................................................................................................................................................................................................................................................................................................CATTTGCATTTGCGCCATTGCTG.................................2311.001100000
......................................................................................................................................................................................................................................................................................................................CATTGCTGCTGCTTCGGCGA.....................2011.001100000
.....................................................................................................................................................................................................................................................................................................................CCATTGCTGCTGCTTCGGC.......................1911.001100000
droBip1
TACCTTCTTCTCA---A---CGATCAACTA---ACCAAT--------TCAAAATGATGAAGTTCATGGTGAGTCTCAGGAACAA------------AAA--------------GC-----------------ATCCTTTC-----------------------------CG------------------------------------------GCGGAATACTAACTTGTG----------------------------------ATAT-------------CT-TCCCTTAGTGCATTTGCATTTGCGCCATCGCTGCTGCTTCGGCGAGTCCTTATGGCGGAAACCG--SizeHit CountTotal NormTotal
No Reads
droKik1
TACTTT---CGCA---A---CGATCAACTA---ACCAACTCAG-CC-TCAGAATGATGAAGTTCATGGTGAGTTTCAACAGTCAATAT------AAATGACAGATCCTTGAGA---TCCTGAATCT----CTATACCTC------------------------------------------CCACTACTCAAAACTA----------------G-GGAATACAAAATTA---------------------------------ATGATGATT-----TTGTTCTA-CTCTTTAGTGCCTCTGCATCTGCGCCATTGCTGCCGCTTCGGCCAACCCCTATGGAGGATCTCG--SizeHit CountTotal NormTotal
No Reads
droRho1
AGTCCC---C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------ATCTAAT------------------------------------------------------TGGTATTT-----TTCTTGAT-TCCTTTAGTGCATCTGCCTCTGCGCCATTGCCGCTGTTTCGGCCAACTCCTATGGAAGTGCCCG--SizeHit CountTotal NormTotal
No Reads
droTak1
TACCTT---CGCA---T---CGATCAACTA---ACCAACTCAG-CC-TCAGAATGATGAAGTTCATGGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TACCTT---CGCA---T---CGATCAACTA---ACCAACTCAG-CC-TCAGAATGATGAAGTTCATGGTAAGCCTTAAGTTCCAATATTGTTTCTATTGACACCTCA---------ACTGAGTCCAGTATG-ATCCTTTCAATAAAATATAACTACATATTATAATAATTG-----GATAAT--------------ATGATTGGATCTTTCTT----------------T-TCTAATACACTTCAGTCTAAACCCAAATTAATTGAATTTT-----TTCTTGAA-TCCCTTAGTGCATCTGCCTCTGCGCCATCTCTGCCGTTTCGGCCAACTCCTACGGACG---TTC--SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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droSim2
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAA-TCCCTTAGTGCATCTGCCTCTGCGCCATCTCTGCCGTTTCGGCCAACGCCTACGGACG--------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
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...............................................................................................................................................................................................................................................................................................................................CGTTTCGGCCAACGCCTA..............1811.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................TCTGCCGTTTCGGCCAACGCC................2111.00100000000001000000
..................................................................................................................................................................................................................................................................................................TAGTGCATCTGCCTCTGCGC.........................................2011.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................TTTCGGCCAACGCCTACGGAC.........2111.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................CCATCTCTGCCGTTTCGGCCA.....................2111.00100000001000000000
droSec2
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAA-TCCCTTAGTGCATCTGCCTCTGCGCCATCTCTGCCGTTTCGGCCAACGCCTACGGACG--------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TACCTT---CGCA---T---CGATCAACTA---ACCAACTCAG-CC-TCAGAATGATGAAGTTCATGGTAAGTCTTAAATTC------------TACTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACC----------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................G-CC-TCAGAATGATGAAGTTCATG............................................................................................................................................................................................................................................................................................23118.0018000000000018
TACCTT---CGCA---T---CGATCAACTA---ACCAACTCAG-C..................................................................................................................................................................................................................................................................................................................3217.00700000000007
TACCTT---CGCA---T---CGATCAACTA---ACCAACTCA.....................................................................................................................................................................................................................................................................................................................3014.00400000000004
.......................................TCAG-CC-TCAGAATGATGAAGTTCATGTGC.........................................................................................................................................................................................................................................................................................2913.00300000000003
.......................................TCAG-CC-TCAGAATGATGA....................................................................................................................................................................................................................................................................................................1813.00300000000003
.......................................TCAG-CC-TCAGAATGATGC....................................................................................................................................................................................................................................................................................................1812.00200000000002
............A---T---CGATCAACTA---ACCAACTCAG-CC-TCAGAAT.........................................................................................................................................................................................................................................................................................................3112.00200000000002
..........................................G-CC-TCAGAATGATGAAGTTCATGT...........................................................................................................................................................................................................................................................................................2412.00200000000002
.........CGCA---T---CGATCAACTA---ACCAACTCAG-CC-TCAGA...........................................................................................................................................................................................................................................................................................................3211.00100000000001
...........CA---T---CGATCAACTA---ACCAACTCAG-CC-TCAGAAT.........................................................................................................................................................................................................................................................................................................3211.00100000000001
....TT---CGCA---T---CGATCAACTA---ACCAACTCAG-C..................................................................................................................................................................................................................................................................................................................2811.00100000000001
droEre2
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAA-TCCCTTAGTGCATCTGCCTCTGCGCCATCTCTGCCGTTTCGGCCAACGGCTATGGACG--------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 08:24 PM