ID:

dvi_18636

 Coordinate:

scaffold_13049:6326410-6326539 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.2 -10.7 -10.7

Flybase annnotation

CDS [Dvir\h-cds]; CDS [Dvir\h-cds]; exon [dvir_GLEANR_12985:2]; exon [dvir_GLEANR_12985:3]; intron [Dvir\h-in]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------##################################################
ATTGCCTGAACGAGCTTAAGACTCTCATCCTGGATGCTACCAAAAAAGACGTAAGTATCTCTAGAGTCTATCAAAATCCACAAAAAAAAGAACTTCAACCCTGCCCCGCAACGCTTTCACCCTTTTGATAAATGCACACTTAACTAACTTTGGATTTGTTTTGCTTTTGCTTAATTTTAGCCGGCGCGTCATTCCAAGCTGGAGAAGGCCGACATTCTGGAGAAGACAGT
**************************************************.((((((.....(((((......(((((((.....(((((...........(((...)))...........)))))........................))))))).....))))))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M061
embryo
 SRR060667
160_females_carcasses_total
 V047
embryo
 M027
male body		 SRR060663
160_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060678
9x140_testes_total
 SRR060684
140x9_0-2h_embryos_total
 V053
head
 SRR060679
140x9_testes_total
..............CGTAAGACTCTCATCCTGGATGC................................................................................................................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TGGAGAAGGCCGACATTCTGGA......... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................GAGAAGGACGACATTCTGGAGAAGAA... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................ACCAAAAAAGACGTAAGTAT............................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................GTCATTCCAAGCTGGAGAAGGCC.................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TCCAAGCTGGAGAAGGCCGAC................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
ATTGCCTGAACGAGCTTAA................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................AGACTCTCATCCTGGATGCTAC.............................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GAGCTTAAGACTCTCATCCTGGAT................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............CTTAAGACTCTCATCCTGGATGCTAC.............................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................CTCATCCTGGATGCTACCAA........................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............TTAAGACTCTCATCCTGGATGCG................................................................................................................................................................................................ 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................GATGCTACCAAAAAAGAC.................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ATTCCAAGCTGGAGAAGGCC.................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................TAAGACTCTCATCCTGGATGCCACCAAAA......................................................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CGCGTCATTCCAAGCTGGAGAAGGC..................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ATTCCAAGCTGGAGAAGGCCG................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................CCGGCGCGTCATTCCAAGCTGGAG.......................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GTCCGACATTCTGGAGAAGAC... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................TAAGACTCTCATCCTGGATGCTACC............................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................AAAAGAACGTCAACCCTGA.............................................................................................................................. 19 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................GAATCTCATCCTGGATGGT................................................................................................................................................................................................ 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................GCTGGAGAAGGCCGACATTCT............ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................AACACTTTCACCCTTTGGATTA................................................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............AGCTCAAGACTCTCATCTTGG..................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GGCGCGTCATTCCAAGCTGGAGAAGGCC.................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CTCTAGAGTCTATCAAAATCCACA.................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................CATTCCAAGCTGGAGAAGGCCGAC................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GAAGCACGGCATTCTGGAG........ 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TAACGGACTTGCTCGAATTCTGAGAGTAGGACCTACGATGGTTTTTTCTGCATTCATAGAGATCTCAGATAGTTTTAGGTGTTTTTTTTCTTGAAGTTGGGACGGGGCGTTGCGAAAGTGGGAAAACTATTTACGTGTGAATTGATTGAAACCTAAACAAAACGAAAACGAATTAAAATCGGCCGCGCAGTAAGGTTCGACCTCTTCCGGCTGTAAGACCTCTTCTGTCA
**************************************************.((((((.....(((((......(((((((.....(((((...........(((...)))...........)))))........................))))))).....))))))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060656
9x160_ovaries_total
 V053
head
 SRR060655
9x160_testes_total
 SRR060689
160x9_testes_total
 SRR060654
160x9_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 V116
male body		 SRR060658
140_ovaries_total
 SRR060670
9_testes_total
 SRR060688
160_ovaries_total
 SRR060673
9_ovaries_total
 M028
head
 SRR060676
9xArg_ovaries_total
 SRR060659
Argentina_testes_total
 SRR1106730
embryo_16-30h
 SRR060660
Argentina_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060657
140_testes_total
 SRR060667
160_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060683
160_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 GSM1528803
follicle cells		 SRR060664
9_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR1106719
embryo_8-10h
 SRR060687
9_0-2h_embryos_total
 SRR1106723
embryo_12-14h
...................................................................................TTTTTTGTTGAAGCTGGGA................................................................................................................................ 19 2 8 9.63 77 36 0 12 3 7 1 0 1 3 3 3 0 0 2 1 0 2 0 0 1 0 0 0 0 0 1 1 0 0 0
..................................................................................TTTTTTTGTTGAAGCTGGGA................................................................................................................................ 20 2 5 6.60 33 18 0 3 2 2 0 0 2 2 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................TTTTTGTTGAAGCTGGGA................................................................................................................................ 18 2 13 2.15 28 7 0 4 2 1 1 0 4 0 0 0 0 0 1 0 2 0 3 1 1 0 0 0 0 0 0 0 1 0 0
...................................................................................TTTTTTGTTGAAGCTTGGACGG............................................................................................................................. 22 3 2 1.50 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TTGTAGTTGGTACGGGGC.......................................................................................................................... 18 2 3 1.33 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................ATCATAGAGGTCTCAGAT................................................................................................................................................................ 18 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGTTGTAGTTGGGACGGGGC.......................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TTGTAGTTGCGACGGGGCG......................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CTCAGATAGTCTCAGGTGTTTC................................................................................................................................................. 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ATAGGGCATTGCGAAAGTGG............................................................................................................. 20 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TCTTGGAGTTGCGACGGGG........................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTTTTTCTTGAAGCTTGGA................................................................................................................................ 19 2 3 0.67 2 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TTGTAGTTGGGACTGGGC.......................................................................................................................... 18 2 4 0.50 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TCTTGTAGTGGCGACGGGGC.......................................................................................................................... 20 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TTTTTTTGTTGAAGTTTGGA................................................................................................................................ 20 2 14 0.50 7 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CTTGTAGTTGGTACGGGGC.......................................................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TTGTAGTTGCGACGGGGC.......................................................................................................................... 18 2 4 0.50 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TTTCTTGTAGTTGCTACGGGGC.......................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GTTTTTTTTGTTGAAGCTTGGA................................................................................................................................ 22 3 6 0.50 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
..........................................................................................TTGTAATTGGGACGGGGC.......................................................................................................................... 18 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TTGGAGTTGCGACGGGGC.......................................................................................................................... 18 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TTCTTGGAGTTGCGACTGGGC.......................................................................................................................... 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TCTTGAAGTTGCGTCCGGGC.......................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................GCTTGTAGTTGGGACTGGGC.......................................................................................................................... 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TTGTGGTTGGGACGGGGC.......................................................................................................................... 18 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CGTTGTAGTTGGGACGGGGC.......................................................................................................................... 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CTTGAAGTTGCTACTGGGC.......................................................................................................................... 19 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTTTTTGTTGAAGATGGGA................................................................................................................................ 19 2 17 0.18 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTACCTCTTCCGGCCGTACG............. 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........TGCTCTACTTCCGAGAGTAG......................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGTTGGAGTTGCGACGGGGC.......................................................................................................................... 20 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CGTTGAAGTTGTGACGGGGC.......................................................................................................................... 20 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TTTTTTTCTTGCGGTTTGGACG.............................................................................................................................. 22 3 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................GCAAGTGGGAATACTGTTTA................................................................................................. 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................AGACAGTTTTAGGTGTTC.................................................................................................................................................. 18 2 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TAGATTAGGACATACGATG.............................................................................................................................................................................................. 19 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................ATTGGAGTTGCGACGGGGC.......................................................................................................................... 19 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GGCTCTGAGACCTGTTCTGT.. 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................CTTGTAGTTGCGACGGGGA.......................................................................................................................... 19 3 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CTTGGAGTTGCTACGGGGC.......................................................................................................................... 19 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CTTGTGGTTGCGACGGGGC.......................................................................................................................... 19 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CTTAAAGTGGAGACGGGGC.......................................................................................................................... 19 3 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTTTTTTTGTTGAAGCTTGGAC............................................................................................................................... 22 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................ATTGTAGTTGCGACGGGGC.......................................................................................................................... 19 3 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTTTTTCTTGAAGCTTGG................................................................................................................................. 18 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTTTTTATTGAAGTTTGGA................................................................................................................................ 19 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................CGAAAATGGGAAAACAAGTT.................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TAGGACCTGAGATGGTTG.......................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................TTTTTTTGTTGAAGCTTGGAC............................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................TTTTTTTGGTGAAGCTGGGA................................................................................................................................ 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GCCGTCAGAGAGATCTCAG.................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TTTGTTTGTTGAAGCTGGGA................................................................................................................................ 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:6326360-6326589 + dvi_18636 ATTGCCTGAACGAGCTTAAGACTCTCATCCTGGATGCTACCAAAAAAGACGTAAGTATCTC-TAG-AGTCT-ATCAAAA---------------------------------------------T-C---------CAC----AAAA---------------------------------------------------------AAAAGA------AC-TTCAAC-CCT---GCCCC----------------GCAACGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC------AC-----------------------------------------------------------CCTTTTGATA------------------------AATG--------CACACTTA-A-----------CTAACTTTGG-----AT-TTG----TTTTGCTTTTGCTTAATTTTAGCCGGCGCGTCATTCCAAGCTGGAGAAGGCCGACATTCTGGAGAAGACAGT
droMoj3 scaffold_6680:4641370-4641653 + ACTGCCTCAACGAGCTGAAGACTCTCATACTAGATGCCACCAAAAAAGACGTAAGTATCTT-A--TACT-ATCCAACTA----CAAGATCTTTGCCT-------CTGTATATAGATTGATAGAT--ATATAGAAAG---TTAG----GAAGTCTATA---------------------------------------------------------------------CCCCTCGCTCTATAAATCTACATCTG------------------TATATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---------------------------------------GCTCCCTTTACACTTCTTATA------------------------------------AACCCATA-A-----------CTAATCCTCA-----CA-TTTTCTCTGA---TCTC-TCTCCTTGCAGCCTGCGCGTCATTCAAAGCTGGAAAAGGCCGACATATTGGAGAAGACAGT
droGri2 scaffold_14662:2649-2860 + ATTGTTTGAACGAGCTAAAGACGCTGATTCTGGATGCGACCAAAAAAGACGTAAGTATCTG-GA--ATG-AA------A----------------------------------------------CC---------AAC----CAAA---------------------------------------------------------AA--------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAACAATTTTC--G-CTGA---------------------------------------------AA--A---------CCAAACTTGTCAATA---------------------AGCATTTA-A-----------CTAATCTTTG-----TA-TTCTTT-ATT---TCCT-TCTACTTTTAGCCGGCGCGCCATTCCAAGCTGGAGAAGGCCGACATTCTGGAGAAGACAGT
droWil2 scf2_1100000004511:8218361-8218596 - dwi_653 ATTGCCTCAATGAGCTAAAGACTCTGATTTTGGATGCCACCAAAAAAGACGTAAGTATCCA-CAACAA-CA-ATAAG---------AA------------------------------------ACG--------------AACAAA-----------------------AAAAAAA----------------------------------------C-A--A---CTTGTAA--------------ATGTTTGAA---TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC--ATTT---TCT------TT-------------------------AAATCCATTTAATTG--------------------------------------------------ACAATTT-A-----------CTAATAATTTATTTTAT-TTA----TTT---TTTG-TATACTTTTAGCCGGCTCGTCATTCTAAATTGGAGAAGGCTGACATTTTGGAGAAAACAGT
dp5 XR_group8:8926372-8926609 - dps_3397 ACTGCCTCAACGAGCTGAAGACCCTCATTCTGGATGCCACCAAAAAAGATGTAAGTATCCG-C--CAA-AA-G-------------------------------CAGCGAAAAGAT-------------------------TA--------------AAAAAAAGAATTA-----------AAAATT-----AAAAAA--AAAAG-AAAGAA---------------------------------------C---AAA-AAA--------------TA----------------------------------------------------------------------------------------------------------------------------------------------------------AACTTCT--A------TT-------------------------ATGGCAAA--------------------------------------------------------AACA-TTT-A-----------TTAATTTATC-----GA-TCCGT--TCT---TCTC-TCTACTTTTAGCCTGCCCGTCATTCCAAATTGGAAAAGGCCGATATCCTGGAGAAGACAGT
droPer2 scaffold_50:279616-279860 + ATTGCCTCAACGAGCTGAAGACCCTCATTCTGGATGCCACCAAAAAAGATGTAAGTATCCG-C--CAA-AA-G-------------------------------CAGCAAAAAGAT-------------------------AA----AAA-------AAAAAAACAATTA-----------AAAATT-----AAAAAAAAAAAAG-AAAGAA---------------------------------------CAAAA---AAA--------------TA----------------------------------------------------------------------------------------------------------------------------------------------------------AACTTAT--A------TT-------------------------ATGGCAAA--------------------------------------------------------AACA-TTTAT-----------TTAATTTATC-----GA-TCCGT--TCT---TCTC-TCTACTTTTAGCCTGCCCGTCATTCGAAATTGGAAAAGGCCGATATCCTGGAGAAGACAGT
droAna3 scaffold_13337:7967919-7968140 - ATTGCCTCAACGAGCTCAAGACTCTCATCTTGGATGCCACCAAAAAAGACGTAAGTATCTT-GAG-AA-----------TATCAAGAAAT------------------------------------ATATAA-----------------A------------------------G-----------------------------------------AG-TTCAAG-CCTCAAGAT--------------GT-CTAAC---TT--------------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------GACTCTAA--A-------------------------------------------------CTCA-ACTTATTCCTTACTAACTTAAG-----TA-TTC----TTT---CCTC-TCTACTTTTAGCCGGCTCGCCACTCGAAATTGGAAAAGGCCGACATCCTGGAGAAGACAGT
droBip1 scf7180000396541:125752-125972 - ATTGCCTCAACGAGCTCAAGACTCTCATCTTGGATGCCACCAAAAAAGACGTAAGTATCTT-GAA-AA-----------TATCAAGAAAC------------------------------------ATATCA-----------------A------------------------G-----------------------------------------AG-TTCAAG-CCTTAAGCTT----------------CGAAA---TA--------------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------TACCCTAC--A-TTTTTAAA------------------------------------AAT-CCTT-A-----------CTAATTTTAA-----AA-TTA----TTT---TCTT-TCTACTTTTAGCCGGCTCGCCACTCGAAATTGGAAAAGGCCGATATTCTGGAGAAGACAGT
droKik1 scf7180000302474:304292-304549 - ATTGCCTCAACGAACTGAAGACTCTGATCTTGGATGCCACCAAAAAAGACGTAAGTATCTG-A--CAA-AG-ATAAG------------------------------------GGG-----------------------TTGG----GAAAGGGATAAAATTAAATATAA-----------TAAATT-----AAATTA----AAGAAAAG------AT-TCCATTGCTTTTTGGTTT----------------GCAAA-ATATAATTTCTTCTATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-------------------------------------------------------------------------------------------------GTTCCTT-A-----------CTAATTTCTG-----TATTTC----CTT---TCTC-TCTACTTTTAGCCGGCTCGCCACTCCAAATTGGAAAAGGCCGACATCCTGGAGAAGACTGT
droFic1 scf7180000453833:858671-858765 + ACTGTCTCAACGAGCTCAAGACTCTCATCCTGGATGCCACCAAAAAAGACGTAAGTATTTT-TTACAACAA-ATTAAAA---------------------------------------------G--------------TTAATAAA-----------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGG---AAGCT
droEle1 scf7180000491240:923675-923762 - TTA-------------------TCTGACTTTGGTTTCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT---GTTC-TCTACTTTTAGCCGGCTCGTCATACCAAACTGGAGAAGGCCGACATACTTGAGATGACGGT
droRho1 scf7180000778254:30386-30682 + ACTGTCTCAATGAACTGAAGACTCTGATTCTGGATGCCACCAAAAAAGACGTAAGTATCTG-A--TAA-AA-A-------------------------------AAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTA-----------------------------------------------------AAATTAAGAAAATTAAAAAAGAGTTTACAAAAAAATACTTGATCTTAAAAAATATATTAATGACAGCTAGCTAAAACGAA--------TTAAAAAATTTTT--T-TTGAC-------------------------------------------------TTTTTGA---------------TAGCTAGTAAAAATGTATTTAAAAATAGTTA-A-----------CTAATTTTTC-----GA-TTT----TTT---TCTC-TCTACTTTTAGCCGGCTCGCCACTCCAAATTGGAAAAGGCCGACATTCTGGAGAAGACAGT
droBia1 scf7180000302428:10608789-10609087 + ACTGTCTCAACGAACTCAAGACTCTGATTCTGGATGCCACCAAAAAAGACGTAAGTATCTG-A--AAG---------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTATATTAAAGTATATAAACAAATTTCAATGGTTAAAGATTAGAAAATTCAAATACAAATTTAGAA--------------------------------------------------------CTTGCTAAT-----TTAAAAATATAATAACTAATT--TTCTAAAAATTAAATTGAACTGATTACTCTAAGAATAA-------GACCCTAA-------------------------------------------------ACA-CTT-A-----------CTAATTTTCT-----GT-TTC----TCT---TCTC-TCTACTTTTAGCCGGCTCGCCACTCCAAATTGGAAAAGGCCGACATCCTGGAGAAGACAGT
droTak1 scf7180000414445:34671-34890 - ACTGTCTCAATGAACTCAAGACGCTGATTCTGGATGCCACCAAAAAAGACGTAAGTATTTT-TAA-AATAA-ATAA-AA--------T--------------------------------------A---------GGT----TAAA---------------------------------------------------------AAAATA------AT-TA-AAA-GTG---ATTAT----------------GCAAA-ATTTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAT--A-TTGA---------------------------------------------A---------------------------------------------------AAGTAT-A-----------CTAATTTCCC-----ATTTTA----TTT---TCTC-TCTACTTTTAGCCGGCTCGCCACTCCAAGTTAGAAAAGGCTGACATCCTGGAGAAGACAGT
droEug1 scf7180000408746:1582-1814 + ACTGTCTCAATGAACTCAAGACCCTTATTCTGGATGCCACCAAGAAAGACGTAAGTATCTG-A--CAA-AA-ATTAG------------------------------------GAT-------------------------TA--------------AAAAA--------CAGAAAATTTAAAATCT------------------------------------------TTAA--------------AAATCAGAA---AAA--------------TT----------------------------------------------------------------------------------------------------------------------------------------------------------ATTTCTT--T------TT-------------------------AAATCAAAATCCCTAC-------------------------------------------------ACA-TTT-A-----------CTAATTTTCG-----AA-TTC----TTT---TCTT-TCTACTTTTAGCCGGCTCGCCACTCCAAGTTAGAAAAAGCCGACATTCTGGAGAAGACAGT
dm3 chr3L:8670518-8670754 + ACTGTCTCAATGAACTCAAGACTCTGATTCTGGATGCCACCAAAAAAGACGTAAGTATCTG-A--CAA-AA-A-------------------------------TA-----TAAGTTTAAAGCCACA--------------AATAAA-----------------------ATAAAAA----------------------------------------A-A--A---C-----------------TACATATTTGAAATTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCAAAT--ATTT---TTTAAA-------------------------------AGTTTAAA--------------------------------------------------------TCA-TTG-A-----------CTAATTTCCA-----AA-TTA----TTTTC-TCTC-TCTACTTTTAGCCGGCTCGCCACTCCAAATTGGAAAAGGCCGACATTCTGGAGAAGACAGT
droSim2 3l:8459709-8459947 + ACTGTCTCAATGAACTCAAGACTCTGATTCTGGATGCCACCAAAAAAGACGTAAGTATTTTAA--TAA-AA-A-------------------------------TA-----A-----------------------------------ATA-------AAAACAACAATTA-----------AAAGTTTCATTCAATAA--AAATG-AAAAAAA--TAT-TTC------------------------------TGAAAA-AT------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAAAATATTT--T-TTGAA-------------------------------------------------------------------------------------------------ATTTT-A-----------CTAATTTCCA-----AA-TTA----TTT---TCTT-TCTACTTTTAGCCGGCTCGCCATTCCAAATTGGAAAAAGCCGACATTCTCGAGAAGACAGT
droSec2 scaffold_0:948330-948569 + ACTGTCTCAATGAACTCAAGACTCTGATTCTGGATGCCACCAAAAAAGACGTAAGTATCTG-A--TAA-AA-A-------------------------------TA-----T-----------------------------------ATA-------AAAACAACAATTA-----------AAAGTTTCCTTCAATAA--AAAAG-AAAAAAA--TAT-TTT------------------------------TGAAAAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAAGTTATTT--TTTTGAA-------------------------------------------------------------------------------------------------ATTTT-A-----------CTAATTTGCA-----AA-TTA----TTT---TCTC-TCTACTTTTAGCCGGCTCGCCATTCCAAATTGGAAAAGGCCGACATTCTCGAGAAGACAGT
droYak3 3L:3241206-3241440 - ACTGTCTCAATGAACTCAAGACTCTGATTCTGGATGCCACCAAAAAAGACGTAAGTATCTG-A--CAAG-ATCCCAAAA----AAAAAAAAC-----AGAAAAATA-----TAA----------------------------------------------------------------------GTTT--TTCAAT-------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------AATGAAACAC-TCGAAAAACAT--------CTAAACTATTTTT--G-TTGA--------------------------------------------------------------------------------------------------ATTTT-A-----------CTAATTTACG-----AA-TTA----TTT---TATC-TCCACTTTTAGCCGGCTCGCCACTCCAAATTGGAAAAGGCCGACATTCTGGAGAAGACAGT
droEre2 scaffold_4784:5375011-5375258 - ACTGTCTCAATGAACTCAAGACTCTGATTCTGGATGCCACCAAAAAAGACGTAAGTATCTC-A--CAATCATACAA-AATATAAAAAAATGC-----ACAAAAATA-----TAA----------------------------------------------------------------------GTTTCCTTCGATAC--AAA---------ATCTATTTTT------------------------------TGAAAACCT------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAAATATATTT--GTTTAAA----------------------------------------------------------------------------------------------ATTTTTTT-A-----------CTAATTTGCG-----AA-TTA----TCT---TCTC-TCTACTTGTAGCCGGCTCGCCACTCCAAATTGGAAAAGGCCGACATTCTGGAGAAGACAGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATTGCCTGAACGAGCTTAAGACTCTCATCCTGGATGCTACCAAAAAAGACGTAAGTATCTC-TAG-AGTCT-ATCAAAA---------------------------------------------T-C---------CAC----AAAA---------------------------------------------------------AAAAGA------AC-TTCAAC-CCT---GCCCC----------------GCAACGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC------AC-----------------------------------------------------------CCTTTTGATA------------------------AATG--------CACACTTA-A-----------CTAACTTTGG-----AT-TTG----TTTTGCTTTTGCTTAATTTTAGCCGGCGCGTCATTCCAAGCTGGAGAAGGCCGACATTCTGGAGAAGACAGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAAGGCCGACATTCTGGA.........2211.001000000000000000000000000000000000010000000000000000000000000000
......................................ACCAAAAAAGACGTAAGTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTCCAAGCTGGAGAAGGCC....................2311.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGCTGGAGAAGGCCGAC.................2111.001000000000000000001000000000000000000000000000000000000000000000
ATTGCCTGAACGAGCTTAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000010000000000000000000000000000000000
..................AGACTCTCATCCTGGATGCTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...........GAGCTTAAGACTCTCATCCTGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..............CTTAAGACTCTCATCCTGGATGCTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000001000
.......................CTCATCCTGGATGCTACCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...............TTAAGACTCTCATCCTGGATGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000000000000000000000000000000000000000000000000000000000000
................................GATGCTACCAAAAAAGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAAGCTGGAGAAGGCC....................2011.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTCATTCCAAGCTGGAGAAGGC.....................2511.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAAGCTGGAGAAGGCCG...................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCGCGTCATTCCAAGCTGGAG..........................2411.001001000000000000000000000000000000000000000000000000000000000000
................TAAGACTCTCATCCTGGATGCTACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000010000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGAGAAGGCCGACATTCT............2111.001000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCGTCATTCCAAGCTGGAGAAGGCC....................2811.001000100000000000000000000000000000000000000000000000000000000000
..........................................................CTC-TAG-AGTCT-ATCAAAA---------------------------------------------T-C---------CAC----A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000010000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCAAGCTGGAGAAGGCCGAC.................2411.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
ACTGCCTCAACGAGCTGAAGACTCTCATACTAGATGCCACCAAAAAAGACGTAAGTATCTT-A--TACT-ATCCAACTA----CAAGATCTTTGCCT-------CTGTATATAGATTGATAGAT--ATATAGAAAG---TTAG----GAAGTCTATA---------------------------------------------------------------------CCCCTCGCTCTATAAATCTACATCTG------------------TATATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---------------------------------------GCTCCCTTTACACTTCTTATA------------------------------------AACCCATA-A-----------CTAATCCTCA-----CA-TTTTCTCTGA---TCTC-TCTCCTTGCAGCCTGCGCGTCATTCAAAGCTGGAAAAGGCCGACATATTGGAGAAGACAGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTGA---TCTC-TCTCCTTGCAG..................................................2211.001100000
................GAAGACTCTCATACTAGATGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
......................................................................................................................................................................................................................................TCGCTCTATAAATCTACATCTG------------------T..................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTGA---TCTC-TCTCCTTGCA...................................................2111.001100000
..................AGACTCTCATACTAGATGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAAGCTGGAAAAGGCCGACA................2311.001000001
..............................TAGATGCCACCAAAAAAGACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................................................................................................................................GAAAG---TTAG----GAAGTCTATA---------------------------------------------------------------------CCC............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droGri2
ATTGTTTGAACGAGCTAAAGACGCTGATTCTGGATGCGACCAAAAAAGACGTAAGTATCTG-GA--ATG-AA------A----------------------------------------------CC---------AAC----CAAA---------------------------------------------------------AA--------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAACAATTTTC--G-CTGA---------------------------------------------AA--A---------CCAAACTTGTCAATA---------------------AGCATTTA-A-----------CTAATCTTTG-----TA-TTCTTT-ATT---TCCT-TCTACTTTTAGCCGGCGCGCCATTCCAAGCTGGAGAAGGCCGACATTCTGGAGAAGACAGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGAGAAGGCCGACATT..............1911.00110
droWil2
ATTGCCTCAATGAGCTAAAGACTCTGATTTTGGATGCCACCAAAAAAGACGTAAGTATCCA-CAACAA-CA-ATAAG---------AA------------------------------------ACG--------------AACAAA-----------------------AAAAAAA----------------------------------------C-A--A---CTTGTAA--------------ATGTTTGAA---TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC--ATTT---TCT------TT-------------------------AAATCCATTTAATTG--------------------------------------------------ACAATTT-A-----------CTAATAATTTATTTTAT-TTA----TTT---TTTG-TATACTTTTAGCCGGCTCGTCATTCTAAATTGGAGAAGGCTGACATTTTGGAGAAAACAGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGAAGGCTGACATTTTGGAG........2411.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCTGACATTTTGGA.........1820.50100001
dp5
ACTGCCTCAACGAGCTGAAGACCCTCATTCTGGATGCCACCAAAAAAGATGTAAGTATCCG-C--CAA-AA-G-------------------------------CAGCGAAAAGAT-------------------------TA--------------AAAAAAAGAATTA-----------AAAATT-----AAAAAA--AAAAG-AAAGAA---------------------------------------C---AAA-AAA--------------TA----------------------------------------------------------------------------------------------------------------------------------------------------------AACTTCT--A------TT-------------------------ATGGCAAA--------------------------------------------------------AACA-TTT-A-----------TTAATTTATC-----GA-TCCGT--TCT---TCTC-TCTACTTTTAGCCTGCCCGTCATTCCAAATTGGAAAAGGCCGATATCCTGGAGAAGACAGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGCCGATATCCTGGA.........1811.0010100000000
...................GACCCTCATTCTGGATGCCACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAGGCCGATATCCTGGAGAAGAC...2711.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGCCGATATCCTGGAGAA......2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCCGATATCCTGGAGAAG.....2111.0010100000000
.......................CTCATTCTGGATGCCACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
......TCAACGAGCTGAAGACCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATATCCTGGAGAAGACA..1911.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAAAGGCCGATATCCTGGAGA.......2411.0010100000000
..........CGAGCTGAAGACCCTCATTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............TGAAGACCCTCATTCTGGATGCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGTCATTCCAAATTGGAAAAGGCCG...................2811.0010100000000
..............CTGAAGACCCTCATTCTGGATGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGATATCCTGGAGAA......1811.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGCCGATATCCTGGAGA.......2011.0010100000000
.....CTCAACGAGCTGAAGACCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCCTGGAGAAGACA..1811.0010001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAAAGGCCGATATCCTGG..........2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGAAAAGGCCGATATCCTGG..........2511.0010100000000
..................................................................................................................................................................................................AAAA--AAAAG-AAAGAA---------------------------------------C---AAA-C.............................................................................................................................................................................................................................................................................................................................................................................................................20130.0810010000000
droPer2
ATTGCCTCAACGAGCTGAAGACCCTCATTCTGGATGCCACCAAAAAAGATGTAAGTATCCG-C--CAA-AA-G-------------------------------CAGCAAAAAGAT-------------------------AA----AAA-------AAAAAAACAATTA-----------AAAATT-----AAAAAAAAAAAAG-AAAGAA---------------------------------------CAAAA---AAA--------------TA----------------------------------------------------------------------------------------------------------------------------------------------------------AACTTAT--A------TT-------------------------ATGGCAAA--------------------------------------------------------AACA-TTTAT-----------TTAATTTATC-----GA-TCCGT--TCT---TCTC-TCTACTTTTAGCCTGCCCGTCATTCGAAATTGGAAAAGGCCGATATCCTGGAGAAGACAGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......CAACGAGCTGAAGACCCTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCGAAATTGGAAAAGGCC....................2112.002200000
..................AGACCCTCATTCTGGATGCCACCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002200000
.......CAACGAGCTGAAGACCCTCATTCTGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAGGCCGATATCCTGG..........2011.001010000
...................GACCCTCATTCTGGATGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.......CAACGAGCTGAAGACCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
droAna3
ATTGCCTCAACGAGCTCAAGACTCTCATCTTGGATGCCACCAAAAAAGACGTAAGTATCTT-GAG-AA-----------TATCAAGAAAT------------------------------------ATATAA-----------------A------------------------G-----------------------------------------AG-TTCAAG-CCTCAAGAT--------------GT-CTAAC---TT--------------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------GACTCTAA--A-------------------------------------------------CTCA-ACTTATTCCTTACTAACTTAAG-----TA-TTC----TTT---CCTC-TCTACTTTTAGCCGGCTCGCCACTCGAAATTGGAAAAGGCCGACATCCTGGAGAAGACAGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........ACGAGCTCAAGACTCTCATCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGCCGACATCCTGGAGAAGAC...2411.001000010
......................TCTCATCTTGGATGCCACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100
...................GACTCTCATCTTGGATGCCACCAAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGACATCCTGGAGAAGACAGT2411.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGACATCCTGGAGAAGACAGT2211.001000001
...............................GGATGCCACCAAAAAAGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
......................TCTCATCTTGGATGCCACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...................GACTCTCATCTTGGATGCCACCAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.......CAACGAGCTCAAGACTCTCATCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
....................ACTCTCATCTTGGATGCCACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.....................CTCTCATCTTGGATGCCACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...........GAGCTCAAGACTCTCATCTTGGATGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAGGCCGACATCCTGGAGAAGACA..2811.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGACATCCTGGAGAAGAC...2111.001100000
ATTGCCTCAACGAGCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100
droBip1
ATTGCCTCAACGAGCTCAAGACTCTCATCTTGGATGCCACCAAAAAAGACGTAAGTATCTT-GAA-AA-----------TATCAAGAAAC------------------------------------ATATCA-----------------A------------------------G-----------------------------------------AG-TTCAAG-CCTTAAGCTT----------------CGAAA---TA--------------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------TACCCTAC--A-TTTTTAAA------------------------------------AAT-CCTT-A-----------CTAATTTTAA-----AA-TTA----TTT---TCTT-TCTACTTTTAGCCGGCTCGCCACTCGAAATTGGAAAAGGCCGATATTCTGGAGAAGACAGTSizeHit CountTotal NormTotal
No Reads
droKik1
ATTGCCTCAACGAACTGAAGACTCTGATCTTGGATGCCACCAAAAAAGACGTAAGTATCTG-A--CAA-AG-ATAAG------------------------------------GGG-----------------------TTGG----GAAAGGGATAAAATTAAATATAA-----------TAAATT-----AAATTA----AAGAAAAG------AT-TCCATTGCTTTTTGGTTT----------------GCAAA-ATATAATTTCTTCTATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-------------------------------------------------------------------------------------------------GTTCCTT-A-----------CTAATTTCTG-----TATTTC----CTT---TCTC-TCTACTTTTAGCCGGCTCGCCACTCCAAATTGGAAAAGGCCGACATCCTGGAGAAGACTGTSizeHit CountTotal NormTotal
No Reads
droFic1
ACTGTCTCAACGAGCTCAAGACTCTCATCCTGGATGCCACCAAAAAAGACGTAAGTATTTT-TTACAACAA-ATTAAAA---------------------------------------------G--------------TTAATAAA-----------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGG---AAGCTSizeHit CountTotal NormTotal
No Reads
droEle1
TTA-------------------TCTGACTTTGGTTTCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT---GTTC-TCTACTTTTAGCCGGCTCGTCATACCAAACTGGAGAAGGCCGACATACTTGAGATGACGGTSizeHit CountTotal NormTotal
No Reads
droRho1
ACTGTCTCAATGAACTGAAGACTCTGATTCTGGATGCCACCAAAAAAGACGTAAGTATCTG-A--TAA-AA-A-------------------------------AAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTA-----------------------------------------------------AAATTAAGAAAATTAAAAAAGAGTTTACAAAAAAATACTTGATCTTAAAAAATATATTAATGACAGCTAGCTAAAACGAA--------TTAAAAAATTTTT--T-TTGAC-------------------------------------------------TTTTTGA---------------TAGCTAGTAAAAATGTATTTAAAAATAGTTA-A-----------CTAATTTTTC-----GA-TTT----TTT---TCTC-TCTACTTTTAGCCGGCTCGCCACTCCAAATTGGAAAAGGCCGACATTCTGGAGAAGACAGTSizeHit CountTotal NormTotal
No Reads
droBia1
ACTGTCTCAACGAACTCAAGACTCTGATTCTGGATGCCACCAAAAAAGACGTAAGTATCTG-A--AAG---------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTATATTAAAGTATATAAACAAATTTCAATGGTTAAAGATTAGAAAATTCAAATACAAATTTAGAA--------------------------------------------------------CTTGCTAAT-----TTAAAAATATAATAACTAATT--TTCTAAAAATTAAATTGAACTGATTACTCTAAGAATAA-------GACCCTAA-------------------------------------------------ACA-CTT-A-----------CTAATTTTCT-----GT-TTC----TCT---TCTC-TCTACTTTTAGCCGGCTCGCCACTCCAAATTGGAAAAGGCCGACATCCTGGAGAAGACAGTSizeHit CountTotal NormTotal
No Reads
droTak1
ACTGTCTCAATGAACTCAAGACGCTGATTCTGGATGCCACCAAAAAAGACGTAAGTATTTT-TAA-AATAA-ATAA-AA--------T--------------------------------------A---------GGT----TAAA---------------------------------------------------------AAAATA------AT-TA-AAA-GTG---ATTAT----------------GCAAA-ATTTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAT--A-TTGA---------------------------------------------A---------------------------------------------------AAGTAT-A-----------CTAATTTCCC-----ATTTTA----TTT---TCTC-TCTACTTTTAGCCGGCTCGCCACTCCAAGTTAGAAAAGGCTGACATCCTGGAGAAGACAGTSizeHit CountTotal NormTotal
No Reads
droEug1
ACTGTCTCAATGAACTCAAGACCCTTATTCTGGATGCCACCAAGAAAGACGTAAGTATCTG-A--CAA-AA-ATTAG------------------------------------GAT-------------------------TA--------------AAAAA--------CAGAAAATTTAAAATCT------------------------------------------TTAA--------------AAATCAGAA---AAA--------------TT----------------------------------------------------------------------------------------------------------------------------------------------------------ATTTCTT--T------TT-------------------------AAATCAAAATCCCTAC-------------------------------------------------ACA-TTT-A-----------CTAATTTTCG-----AA-TTC----TTT---TCTT-TCTACTTTTAGCCGGCTCGCCACTCCAAGTTAGAAAAAGCCGACATTCTGGAGAAGACAGTSizeHit CountTotal NormTotal
No Reads
dm3
ACTGTCTCAATGAACTCAAGACTCTGATTCTGGATGCCACCAAAAAAGACGTAAGTATCTG-A--CAA-AA-A-------------------------------TA-----TAAGTTTAAAGCCACA--------------AATAAA-----------------------ATAAAAA----------------------------------------A-A--A---C-----------------TACATATTTGAAATTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCAAAT--ATTT---TTTAAA-------------------------------AGTTTAAA--------------------------------------------------------TCA-TTG-A-----------CTAATTTCCA-----AA-TTA----TTTTC-TCTC-TCTACTTTTAGCCGGCTCGCCACTCCAAATTGGAAAAGGCCGACATTCTGGAGAAGACAGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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droSim2
ACTGTCTCAATGAACTCAAGACTCTGATTCTGGATGCCACCAAAAAAGACGTAAGTATTTTAA--TAA-AA-A-------------------------------TA-----A-----------------------------------ATA-------AAAACAACAATTA-----------AAAGTTTCATTCAATAA--AAATG-AAAAAAA--TAT-TTC------------------------------TGAAAA-AT------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAAAATATTT--T-TTGAA-------------------------------------------------------------------------------------------------ATTTT-A-----------CTAATTTCCA-----AA-TTA----TTT---TCTT-TCTACTTTTAGCCGGCTCGCCATTCCAAATTGGAAAAAGCCGACATTCTCGAGAAGACAGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
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..............CTCAAGACTCTGATTCTGGATGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
............AACTCAAGACTCTGATTCTGGATGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000000000
.....................CTCTGATTCTGGATGCCACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
..................AGACTCTGATTCTGGATGCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
........AATGAACTCAAGACTCTGATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
droSec2
ACTGTCTCAATGAACTCAAGACTCTGATTCTGGATGCCACCAAAAAAGACGTAAGTATCTG-A--TAA-AA-A-------------------------------TA-----T-----------------------------------ATA-------AAAACAACAATTA-----------AAAGTTTCCTTCAATAA--AAAAG-AAAAAAA--TAT-TTT------------------------------TGAAAAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAAGTTATTT--TTTTGAA-------------------------------------------------------------------------------------------------ATTTT-A-----------CTAATTTGCA-----AA-TTA----TTT---TCTC-TCTACTTTTAGCCGGCTCGCCATTCCAAATTGGAAAAGGCCGACATTCTCGAGAAGACAGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGACATTCTCGAGAAGACA..2112.0020101
...................GACTCTGATTCTGGATGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGACATTCTCGAGAAGACA..2211.0010001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGCCGACATTCTCGAGAAGACAGT2711.0010100
.................AAGACTCTGATTCTGGATGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
................CAAGACTCTGATTCTGGATGCCACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGCCGACATTCTCGAGAAGACA..2611.0010100
droYak3
ACTGTCTCAATGAACTCAAGACTCTGATTCTGGATGCCACCAAAAAAGACGTAAGTATCTG-A--CAAG-ATCCCAAAA----AAAAAAAAC-----AGAAAAATA-----TAA----------------------------------------------------------------------GTTT--TTCAAT-------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------AATGAAACAC-TCGAAAAACAT--------CTAAACTATTTTT--G-TTGA--------------------------------------------------------------------------------------------------ATTTT-A-----------CTAATTTACG-----AA-TTA----TTT---TATC-TCCACTTTTAGCCGGCTCGCCACTCCAAATTGGAAAAGGCCGACATTCTGGAGAAGACAGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....CTCAATGAACTCAAGACTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.00320000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACATTCTGGAGAAGACAGT2112.00201000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCCGACATTCTGGAGAAGAC...2312.00200000200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACAT--------CTAAACTATTTTT--G-TTGA--------------------------------------------------------------------------------------------------A..................................................................................................................2711.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTTAGCCGGCTCGCCACT.....................................2111.00100000010000
...GTCTCAATGAACTCAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000
ACTGTCTCAATGAACTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGAAAAGGCCGACATTCTGGAGAA......2911.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCACTCCAAATTGGAAAAGG......................2311.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTCTGGAGAAGACA..1811.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGAAAAGGCCGACATTCTGGAGA.......2811.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACTCCAAATTGGAAAAG.......................2011.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAGGCCGACATTCTGGAG........2211.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCCACTCCAAATTGGA...........................2011.00101000000000
..................AGACTCTGATTCTGGATGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGCCGACATTCTGGAGAA......2211.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGACATTCTGGAGAAGACA..2111.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACATTCTGGAGAAGACA..1911.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TTA----TTT---TATC-TCCACTTTTAG..................................................2211.00101000000000
..................................................................................................................................................................................................AT-------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------AATGAAACAC-TCGAAA.......................................................................................................................................................................................................................................................1911.00101000000000
..........................................................................................................................................................................................TT--TTCAAT-------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------AATGAAACAC-TCGAAA.......................................................................................................................................................................................................................................................2511.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCACTCCAAATTGGAAAAG.......................2111.00101000000000
....................ACTCTGATTCTGGATGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000
ACTGTCTCAATGAACTCAAGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
droEre2
ACTGTCTCAATGAACTCAAGACTCTGATTCTGGATGCCACCAAAAAAGACGTAAGTATCTC-A--CAATCATACAA-AATATAAAAAAATGC-----ACAAAAATA-----TAA----------------------------------------------------------------------GTTTCCTTCGATAC--AAA---------ATCTATTTTT------------------------------TGAAAACCT------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAAATATATTT--GTTTAAA----------------------------------------------------------------------------------------------ATTTTTTT-A-----------CTAATTTGCG-----AA-TTA----TCT---TCTC-TCTACTTGTAGCCGGCTCGCCACTCCAAATTGGAAAAGGCCGACATTCTGGAGAAGACAGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................AGACTCTGATTCTGGATGCCACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGCCGACATTCTGGAGAAGACA..2511.0010000010
.............ACTCAAGACTCTGATTCTGGATGCCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
..................AGACTCTGATTCTGGATGCCACCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-TCTACTTGTAGCCGGCTCGC.........................................2111.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACATTCTGGAGAAGACA..1911.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGCCGACATTCTGGAGAAGAC...2511.0010000100
...................GACTCTGATTCTGGATGCCACCAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
.....CTCAATGAACTCAAGACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010

Generated: 05/16/2015 at 08:23 PM