ID:

dvi_18461

 Coordinate:

scaffold_13049:5328530-5328680 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.4 -23.3 -23.2

Flybase annnotation

exon [dvir_GLEANR_12339:1]; CDS [Dvir\GJ12366-cds]; intron [Dvir\GJ12366-in]

Repeatable elements

NameClassFamilyStrand
(TA)nSimple_repeatSimple_repeat+

Sense Strand Reads

--------##########################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACATCAAAATGTACACTAACAGCATTTCGGCAATTGGGCGCAATATAACGGTTTGTTCGAGCTTCTATGTTACCACGACTGCGGTTCTTTAAGTTAAGCTACGATATTTATATATAAAGCGTATATATATATATATATATATATATATATATTTATTTTGCATACTACACACTAATTTTATGAAGTGATTGTGTTCACGCTGCGGTAAAAATTACAACTTTTAATCAAAATGCATATTTATTTATAATAAT
*****************************************************...((((((((((.....(((........)))......))..))))).))).........(((((..(((((((((((((....))))))))))))).)))))...((.....(((((...((((....))))...)))))....))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060689
160x9_testes_total
 SRR060678
9x140_testes_total
 SRR060683
160_testes_total
 GSM1528803
follicle cells		 V047
embryo
 M061
embryo
 SRR060663
160_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060680
 9xArg_testes_total
 SRR060681
Argx9_testes_total
 V116
male body		 M027
male body		 SRR060661
160x9_0-2h_embryos_total
 SRR060655
9x160_testes_total
 SRR060659
Argentina_testes_total
 SRR060665
9_females_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060670
9_testes_total
 SRR060675
140x9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060679
140x9_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
.....................................................TGTTCGAGCTTCTATGTTACCACGACT........................................................................................................................................................................... 27 0 1 6.00 6 0 4 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................TAATTTTATGAAGTGATTGTGTTCACGC................................................... 28 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................ACAGCATTTCGGCAATTGGGC.................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGTTCGAGCTTCTATGTTA................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................TAATTTTATGAAGTGATTGT........................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CTGCGGTTCTTTAAGTTAAG......................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CGAGGACTGCGGTTCTTT................................................................................................................................................................. 18 2 2 1.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................TTTTATGAAGTGATTGTGTTCACGCT.................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AGTGATTGTGTTCACGCTGCGG.............................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TGTGTTCACGCTGCGGTAAAAATTAC.................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GCATTTCGGCAATTGGGCG................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................GCGGTTCTTTAAGTTAAGCTACGAT.................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................GTTCTTTAAGTTAAGCTAC..................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................ATGTTACCACGACTGCGGTTCTT.................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AATTTTATGAAGTGATTGTGTTCA...................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTGTTCGAGCTTCTATGTTACCACGA............................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TAATTTTATGAAGTGATTGTGTT........................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AACAGCATTTCGGCAATTGGG..................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TTTTGCATACTACACACTAAT........................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TATATATATATATATTTATTTTGCATAC...................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CAACTTTTAATCAAAATGCATATTTAT.......... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AATTTTACGAAGTGATTGTGTTCAC..................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................AACGGTTTGTTCGAGCTTCTATGTTA................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................AATTTTATGAAGTGATTGTGT......................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................CTTTAAGTTAAGCTACGATATTTAT............................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AGCAGCATTTCGGCAATTGGG..................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................ATTGTGTTCACGCTGCGGT............................................. 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGTTCGAGCTTCTATGTTACC................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........GTACACTAACAGCATTTCGGC............................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........GTACACTAACAGCATTTCGGCAATT........................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TATGAAGTGATTGTGTTCACGCTGCGG.............................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TTTGTTCGAGCTTCTATGTTACCAC............................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................CGACTGCGGTTCTTTAAGTTAAGCTAC..................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CTAACAGCATTTCGGCAATTGGGCGCAC................................................................................................................................................................................................................ 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CACTGCGGTAAAAATTACAA.................................. 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGTTCGAGCTTCTATGTTACCCCTACT........................................................................................................................................................................... 27 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTTTGTTCGAGCTGCTAT....................................................................................................................................................................................... 18 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TGAAGTGATTGTGTTCACGCTGCGGTA............................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................CAATATAACGGTTTGTTCGAGC............................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................CGACTGCGGTTCTTTAAGTTA........................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................TTATATATAAAGCGTATATA............................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GCATTTCGGCAATTTGGCGC.................................................................................................................................................................................................................. 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................ATATAACGGTTTGTTCGAGC............................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CGACGAGTGCGGTTCTTT................................................................................................................................................................. 18 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................CTTTAAGTTAAGCTACGAT.................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................ATGAAGTGATTGTGTTCACGCTGC................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................TGTTCGAGCTTCTATGTTACCACGACC........................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AACAGCATTTCGGCAATTGGGCGC.................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CCAGGAGTGCGGTTCTTT................................................................................................................................................................. 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TCATTTCGGCAATTTGGCGC.................................................................................................................................................................................................................. 20 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GAAGTGATCCTGTTCCCGCT.................................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................ATTTCGGCAACTGGGCTCC................................................................................................................................................................................................................. 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CGAGGATTGCGGTTCTTT................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................GCGACGAGTGCGGTTCTTT................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGTAGTTTTACATGTGATTGTCGTAAAGCCGTTAACCCGCGTTATATTGCCAAACAAGCTCGAAGATACAATGGTGCTGACGCCAAGAAATTCAATTCGATGCTATAAATATATATTTCGCATATATATATATATATATATATATATATATAAATAAAACGTATGATGTGTGATTAAAATACTTCACTAACACAAGTGCGACGCCATTTTTAATGTTGAAAATTAGTTTTACGTATAAATAAATATTATTA
***************************************************...((((((((((.....(((........)))......))..))))).))).........(((((..(((((((((((((....))))))))))))).)))))...((.....(((((...((((....))))...)))))....))***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060684
140x9_0-2h_embryos_total
 SRR060679
140x9_testes_total
 V053
head
 M028
head
 M027
male body		 SRR1106729
mixed whole adult body
...........................................................TGGAAGCTACAATGGTGC.............................................................................................................................................................................. 18 2 2 0.50 1 1 0 0 0 0 0
.......................................................................TGGTGATGACGCAAAGAA.................................................................................................................................................................. 18 2 4 0.25 1 0 1 0 0 0 0
.......................................CGTTGTAATTCCAAACAAGC................................................................................................................................................................................................ 20 3 8 0.13 1 0 0 1 0 0 0
.................................................................................................................................................................................................................................GTTCTACGTATAAATAAAAATC.... 22 3 10 0.10 1 0 0 0 1 0 0
.................................................CCAAGCTACCTCGAAGATA....................................................................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 1 0
...........................................................................................................................ATATATATATATATATATATATATATATA................................................................................................... 29 0 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:5328480-5328730 - dvi_18461 ACATCA---------------AAATGTACA---CTAACAGCATTTCGGCA---------------------------------------------------------------------------ATTGGGCGCAATATAACGGT----TTGT----------------------------------------------------T------------------------------CGAGCTTCTA--------------------TG---TTACCACGACTGCGGTTCTTTAAGT-TAAGCTACGAT-------------ATTTATATATAAAGCGTATATATATATATATATATATA------TATATATATTTA------------TTTT------GCATACTACACACT-------AA--TTTTATGAAGTGATTGTGTTCACGCTGCGGTAAAAATTACAACTTTTAATC----------------------------------------------AAAA----------TGC-------------------------------AT-----------------------------------------AT------------TTATTTATAAT--------AAT------
droMoj3 scaffold_6680:3689027-3689241 - ACATTA---------------AACTGTAAT---CTAACAGCATTTCAGCA--------------------------------------------------------------------------ACTTTGGCGGCAAACATCAAT-TTTTTGT----------------------------------------------------------------------------TAGCAAATGTGCTTCTA-------------------------TTACCACGACTGCGGTTCTTTAAGT-TAAGGTACTAT-------CATTATAT-----------------------GTATATTTATACA------CGTACATA----------------TTTATGACATGCATA--------------------------------------------ATGCA--AGAAATTACAACGTTTAATCAAAAAAATATATATAATTTATTT----------------------------------------ATAAAA--------------------------------------------------------------------------------------------T--------AAT------
droGri2 scaffold_15110:13663708-13664022 + ACATAG--CAAACAAACAAAAAAATGTATTCTGCTAACAGCATTTCGGCA--------------------------------------------------------------------------AATTGGACGCAAAAAAACAACATTTTTGTTGCAA-------------------------------------------------------------TGTTCTTC--TAGCAAATGTGCTTCTA--------------------A----TTACCACTACTGCGGTTCTTTAAGT-TAAGCTACTAT-------CTATATATTTATATATAAA---TATATACATACATATATATTAA------CATATATATGT------------ATTTATGACATGCATA----CTACAACACACTAATCTTTTACAAAGCGATTGTGTTCACACTGAA--AGAAATTACAACTTTTATTT----------------------------------------------AAAA----------TACTTACAT------------------------------------------------------------------------ACATACATCTTTATTTATGA-TA------TAT------
droWil2 scf2_1100000004511:7865493-7865624 + TATGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-----------GTGTATATATATACATATATATATA------TATATATAAAGT------------TT------------------------------------------------------------------------TTGCCGTTGTTCTAAACATTGAATGTAATCCAAGAATGAAATGCTAGTCCTTCAAAACAAAAACAAAAAAGGCATCTATCT--------------------------------------------------------------------------------------------A--------CAC------
dp5 XR_group6:1355709-1356043 - ACCCCT--CA--------------TGTTAT---CTAACAACGTATCAGCACTCTCAGGGTTACCGTATATTTTGGCTGGCATAACAAATGAATAAATTCCATTCTATCC------------------------------------ATTTTTATGGCATAGCTAAAATAGGTGGTAACCCTACCACTCTAGCACACTCTAACACATCCACCATCAATATATGTCTCTCTACAGTAAAGGCGCTTGTATATGTGTTCTTTAAACATTATATTACCCCGACGACTGCAATTCTTAAAATCTAAGTTTCGAA-------AATTAGAC----------ACT----------------------------------------------------------GCACAC-------------------G------CTCTTAATTAATTGTGTCAACACTGAGA-AAAAAAGACAA-TTTTAATC----------------------------------------------AAAA----------TATTTATAA--------------------------------------------------------------------------------------------T--------CAT------
droPer2 scaffold_12:2044734-2044822 - TTTCGAA------------------------------------------A---------------------------------------------------------------------------ATTAGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACT----------------------------------------------------------GCACAC-------------------G------CTCTTAATTAATTGTGTCAACACTGAGA-AAAAAAGACAA-TTTTAATC----------------------------------------------AAAA----------TATTTATAA--------------------------------------------------------------------------------------------T--------CAT------
droAna3 scaffold_13337:16145710-16145760 - TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTAACCCCGA---GGAAAAGACAA-TTTTAATC----------------------------------------------AAAA----------TATTTATAA--------------------------------------------------------------------------------------------T--------CAT------
droBip1 scf7180000396589:287018-287269 + CTACCAACTC--------------TCTCT---------------------------------CTCTATATTTATATTGACATTATTTCAGATTATAATTCCTTATAATCTTTATAATTATCTGGGATTTGATGAGAAATAATGTT----ACTT----------------------------------------------------ACATT-------------------TTCAAAATGTGTTTTTA--------------------AT---TTTTAACGACTGCGGTTCTTAA-TC-TAAGTTT------------------------------------------------------A------CGAAC----GT------------ATTTAAGCGAGG-------------------G------CTATCGATCAATTGTGTTAACCCTGAG---AAAAAGACAA-TTTTAATC----------------------------------------------AAAAAGAAAAAA--TATATATAT--------------------------------------------------------------------------------------------T--------TAT--ATTT
droKik1 scf7180000302307:289974-290051 - TAGGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATGTAAA---TATATATGTATATATATATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------TATATATATTCATATTTCTCTCTTCACCTTAACTT----------------------------------------------------------------------------TA------
droFic1 scf7180000453842:196668-196739 - TTTCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TCACCTATCAT-------------GAATATTTATAAATTGTATATATTTACGTATAAATTTA------TCTATCCATCTT------------TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------
droEle1 scf7180000487778:842-978 - ATATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATAT----A---TATATATATATATATATATATA------TATATATATATA------------TACT------ATATACTATATACT-------AT---------------------------------------------------------------------------------------------------------------------------------------------ATATCTATACTATTATATATATATACTATATACTATATATAATATACTAAT------------A----TACTT-AATATACTAAT------
droRho1 scf7180000778172:8907-8960 - GATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTAACCCTCGG--AAAAAAGACAA-TTTCAATC----------------------------------------------AAAA----------TATTTATAT--------------------------------------------------------------------------------------------T--------CAT------
droBia1 scf7180000302193:6289136-6289190 - GATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTAGCCCCCGGA-GGAAAAGACAA-TTTTAATC----------------------------------------------AAAA----------TATTTATAT--------------------------------------------------------------------------------------------T--------CAT------
droTak1 scf7180000415773:301313-301373 + GATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTAACCCCCGGA-GGAAAAGACAA-TTTTAATC----------------------------------------------AAAA----------TATTTATAT--------------------------------------------------------------------------------------------T--------CATTAACTT
droEug1 scf7180000409624:29103-29195 - TTTTTTATTT--------------TATTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGAT-------------ACTTGAATAAATA---TATATATATATATATATATATA------TATATATATTTA------------TTTA------ATACACTTCACT--------------------------------------------------------------------------------------------------------------------------------------------------------ACACTTT----------------------------------------------------------------------------TA------
dm3 chrUextra:7927289-7927427 + CTTTAA--TT--------------TAATAT---TTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATATTTGGTATATATATAT---------------------ATATATATATATATATATATATTTATATTTACATATATATATATTTAT------------------------------------------------------------------ATACATTTATTAATA----------------------------------------------TATA----------TGT-------------------------------AT-----------------------------------------ATATACATATATATATATATATACATA------TAT------
droSim2 node_33578:4235-4359 - ATATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATAT----A---TATATATATATATATATATATA------TATATATATGCA------------TGTC------ACTTGCCTGCCACA-------AT--GTTGACGAAGTG-------------------CTAAATTTCAATTTACAGTCAGAATT-------------------------------------------------------ATT-----------------------------------------------------------------------TAAT------------T----TACCC-AA------TAT------
droSec2 scaffold_109:8341-8463 + TATATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-ATAT----A---TATATATATATATATATATATA------TATATATATGTA------------TGTC------ACTTGCCTGCCACA-------AT--GTTGACGAAGTG-------------------CTAAATTTCAATTTACAGTCAGAATT-------------------------------------------------------ATT-----------------------------------------------------------------------TAAT------------T----TACTC-AA------TAT------
droYak3 3L:7964660-7964713 - GATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTAGCCCCCGG--AGAAAAGACAA-TTTTAATC----------------------------------------------AAAA----------TATTTATAT--------------------------------------------------------------------------------------------T--------CAT------
droEre2 scaffold_4784:3981470-3981535 + CTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATG------------------------------------------------------------------------------------------------------------------AGCTGAGTTCATG--AGAAAAGACAA-TTTTAATC----------------------------------------------AAAA----------TATTTATAT--------------------------------------------------------------------------------------------T--------CATTAACTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ACATCA---------------AAATGTACA---CTAACAGCATTTCGGCA---------------------------------------------------------------------------ATTGGGCGCAATATAACGGT----TTGT----------------------------------------------------T------------------------------CGAGCTTCTA--------------------TG---TTACCACGACTGCGGTTCTTTAAGT-TAAGCTACGAT-------------ATTTATATATAAAGCGTATATATATATATATATATATA------TATATATATTTA------------TTTT------GCATACTACACACT-------AA--TTTTATGAAGTGATTGTGTTCACGCTGCGGTAAAAATTACAACTTTTAATC----------------------------------------------AAAA----------TGC-------------------------------AT-----------------------------------------AT------------TTATTTATAAT--------AAT------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................TGT----------------------------------------------------T------------------------------CGAGCTTCTA--------------------TG---TTACCACGACT....................................................................................................................................................................................................................................................................................................................................................................................2716.006000000000000000000000000001000000100000400000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................T-------AA--TTTTATGAAGTGATTGTGTTCACGC.............................................................................................................................................................................................................2812.002000000000000000000000000000010000100000000000000000000000000000
....................................ACAGCATTTCGGCA---------------------------------------------------------------------------ATTGGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000001000000000000000000000000000000000000000000000000000
......................................................................................................................................................TGT----------------------------------------------------T------------------------------CGAGCTTCTA--------------------TG---TTA............................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000001000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................T-------AA--TTTTATGAAGTGATTGT.....................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................CTGCGGTTCTTTAAGT-TAAG.................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGAAGTGATTGTGTTCACGCT............................................................................................................................................................................................................2611.001000000000000000000000000000000100000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGATTGTGTTCACGCTGCGG........................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTCACGCTGCGGTAAAAATTAC..............................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
.......................................GCATTTCGGCA---------------------------------------------------------------------------ATTGGGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000100000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GCGGTTCTTTAAGT-TAAGCTACGAT-------------.............................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000001
.............................................................................................................................................................................................................................................................................................GTTCTTTAAGT-TAAGCTAC.............................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................A--------------------TG---TTACCACGACTGCGGTTCTT...........................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................AA--TTTTATGAAGTGATTGTGTTCA................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................TTGT----------------------------------------------------T------------------------------CGAGCTTCTA--------------------TG---TTACCACGA......................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................T-------AA--TTTTATGAAGTGATTGTGTT..................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000100000000000000000000000
...................................AACAGCATTTCGGCA---------------------------------------------------------------------------ATTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TTTT------GCATACTACACACT-------AA--T.....................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................TATATA------TATATATATTTA------------TTTT------GCATAC.........................................................................................................................................................................................................................................................2811.001000000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTTTTAATC----------------------------------------------AAAA----------TGC-------------------------------AT-----------------------------------------AT------------TTAT........................2711.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................AACGGT----TTGT----------------------------------------------------T------------------------------CGAGCTTCTA--------------------TG---TTA............................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................AA--TTTTATGAAGTGATTGTGT...................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................CTTTAAGT-TAAGCTACGAT-------------ATTTAT.......................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGTTCACGCTGCGGT.......................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................TGT----------------------------------------------------T------------------------------CGAGCTTCTA--------------------TG---TTACC..........................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
.........................GTACA---CTAACAGCATTTCGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
.........................GTACA---CTAACAGCATTTCGGCA---------------------------------------------------------------------------ATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGTGATTGTGTTCACGCTGCGG........................................................................................................................................................................................................2711.001000000000000000000000000000000000000000100000000000000000000000
................................................................................................................................................T----TTGT----------------------------------------------------T------------------------------CGAGCTTCTA--------------------TG---TTACCAC........................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................CGACTGCGGTTCTTTAAGT-TAAGCTAC.............................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.................................CTAACAGCATTTCGGCA---------------------------------------------------------------------------ATTGGGCGCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGTGATTGTGTTCACGCTGCGGTA......................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................CAATATAACGGT----TTGT----------------------------------------------------T------------------------------CGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................CGACTGCGGTTCTTTAAGT-TA...................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................TTATATATAAAGCGTATATA.......................................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................ATATAACGGT----TTGT----------------------------------------------------T------------------------------CGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................CTTTAAGT-TAAGCTACGAT-------------.............................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGTGATTGTGTTCACGCTGC..........................................................................................................................................................................................................2411.001000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................TGT----------------------------------------------------T------------------------------CGAGCTTCTA--------------------TG---TTACCACGACC....................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000100000000000000000000000000000
...................................AACAGCATTTCGGCA---------------------------------------------------------------------------ATTGGGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
ACATTA---------------AACTGTAAT---CTAACAGCATTTCAGCA--------------------------------------------------------------------------ACTTTGGCGGCAAACATCAAT-TTTTTGT----------------------------------------------------------------------------TAGCAAATGTGCTTCTA-------------------------TTACCACGACTGCGGTTCTTTAAGT-TAAGGTACTAT-------CATTATAT-----------------------GTATATTTATACA------CGTACATA----------------TTTATGACATGCATA--------------------------------------------ATGCA--AGAAATTACAACGTTTAATCAAAAAAATATATATAATTTATTT----------------------------------------ATAAAA--------------------------------------------------------------------------------------------T--------AAT------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................AAGGTACTAT-------CATTATAT-----------------------GT..................................................................................................................................................................................................................................................................................................................2012.002100001
............................................................................................................................................................................................................................................................................................................................................................ATATTTATACA------CGTACATA----------------TTTAT....................................................................................................................................................................................................................................................................2412.002200000
.........................................................................................................................................................................................................................................................................................................TAAGGTACTAT-------CATTATAT-----------------------GT..................................................................................................................................................................................................................................................................................................................2112.002100001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAACGTTTAATCAAAAAAAT...........................................................................................................................................................................2311.001100000
..........................................TTTCAGCA--------------------------------------------------------------------------ACTTTGGCGGCAAACATCAAT-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.................................CTAACAGCATTTCAGCA--------------------------------------------------------------------------ACTTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
............................................................................................................................................................................................................................................TGTGCTTCTA-------------------------TTACCACGACTGCGGT...............................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.........................................ATTTCAGCA--------------------------------------------------------------------------ACTTTGGCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................GACATGCATA--------------------------------------------ATGCA--AGAAATTACAACGT.........................................................................................................................................................................................2911.001100000
............................................TCAGCA--------------------------------------------------------------------------ACTTTGGCGGCAAACATCAAT-T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.........................................................................................................................................................................................................................................AAATGTGCTTCTA-------------------------TTACCAC........................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
........................................CATTTCAGCA--------------------------------------------------------------------------ACTTTGGCGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACGTTTAATCAAAAAAAT...........................................................................................................................................................................2211.001100000
..............................................................................................................................................................................................................................................TGCTTCTA-------------------------TTACCACGACTGC..................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
....................................................................................................................................................................................................................................................TA-------------------------TTACCACGACTGCGGT...............................................................................................................................................................................................................................................................................................................................................................................1811.001100000
droGri2
ACATAG--CAAACAAACAAAAAAATGTATTCTGCTAACAGCATTTCGGCA--------------------------------------------------------------------------AATTGGACGCAAAAAAACAACATTTTTGTTGCAA-------------------------------------------------------------TGTTCTTC--TAGCAAATGTGCTTCTA--------------------A----TTACCACTACTGCGGTTCTTTAAGT-TAAGCTACTAT-------CTATATATTTATATATAAA---TATATACATACATATATATTAA------CATATATATGT------------ATTTATGACATGCATA----CTACAACACACTAATCTTTTACAAAGCGATTGTGTTCACACTGAA--AGAAATTACAACTTTTATTT----------------------------------------------AAAA----------TACTTACAT------------------------------------------------------------------------ACATACATCTTTATTTATGA-TA------TAT------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAGCGATTGTGTTCACACTGAA--A......................................................................................................................................................................................................2611.00110
.......................................................................................................................................................GTTGCAA-------------------------------------------------------------TGTTCTTC--TAGCAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110
....................................ACAGCATTTCGGCA--------------------------------------------------------------------------AATTGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
.............................................................................................................................................................................................................................................................................................................................................................................................................ATGCATA----CTACAACACACTAATC......................................................................................................................................................................................................................................2311.00110
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCGATTGTGTTCACACT............................................................................................................................................................................................................2011.00110
droWil2
TATGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-----------GTGTATATATATACATATATATATA------TATATATAAAGT------------TT------------------------------------------------------------------------TTGCCGTTGTTCTAAACATTGAATGTAATCCAAGAATGAAATGCTAGTCCTTCAAAACAAAAACAAAAAAGGCATCTATCT--------------------------------------------------------------------------------------------A--------CAC------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................................................................ATATAAAGT------------TT------------------------------------------------------------------------TTGCCGTT.......................................................................................................................................................................................1911.00100010
......................................................................................................................................................................................................................................................................................................................................................................................AGT------------TT------------------------------------------------------------------------TTGCCGTTGTTCTA.................................................................................................................................................................................1911.00110000
dp5
ACCCCT--CA--------------TGTTAT---CTAACAACGTATCAGCACTCTCAGGGTTACCGTATATTTTGGCTGGCATAACAAATGAATAAATTCCATTCTATCC------------------------------------ATTTTTATGGCATAGCTAAAATAGGTGGTAACCCTACCACTCTAGCACACTCTAACACATCCACCATCAATATATGTCTCTCTACAGTAAAGGCGCTTGTATATGTGTTCTTTAAACATTATATTACCCCGACGACTGCAATTCTTAAAATCTAAGTTTCGAA-------AATTAGAC----------ACT----------------------------------------------------------GCACAC-------------------G------CTCTTAATTAATTGTGTCAACACTGAGA-AAAAAAGACAA-TTTTAATC----------------------------------------------AAAA----------TATTTATAA--------------------------------------------------------------------------------------------T--------CAT------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................TTGGCTGGCATAACAAATGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020200000000
...................................................................................................................................................................................................................TCAATATATGTCTCTCTACAGTAAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000020
......................................................................TTTGGCTGGCATAACAAATGAATAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000020
............................................................................................................................................................................................................................GTCTCTCTACAGTAAAGGCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................TTTCGAA-------AATTAGAC----------ACT----------------------------------------------------------GCACAC-------------------G------C...................................................................................................................................................................................................................................2611.0010000000010
.........................................GTATCAGCACTCTCAGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.....................................CAACGTATCAGCACTCTCAGGGTTACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.........................................................................GGCTGGCATAACAAATGAATAAATTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
........................................................................................................................................................................................CTCTAGCACACTCTAACACATCCACCATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010001000000
............................................................................................................................................................................................................................................................................TTACCCCGACGACTGCAATTCTT...........................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.........................................GTATCAGCACTCTCAGGGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
.......................................................................................................................................................................................................................................GTAAAGGCGCTTGTATAT.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
..........................................TATCAGCACTCTCAGGGTTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.........................................................................................................................................................................................................................TATGTCTCTCTACAGTAAAGGCGCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
......................................................................TTTGGCTGGCATAACAAATGAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..........................................................................................................TCC------------------------------------ATTTTTATGGCATAGCTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000100
................................................................GTATATTTTGGCTGGCATAACAAATGAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000000
.........................................................................................................................................................................................TCTAGCACACTCTAACACATCCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...........................TAT---CTAACAACGTATCAGCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................TAACAACGTATCAGCACTCTCAGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100000
.............................................................................................AAATTCCATTCTATCC------------------------------------ATTTTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
................................................................GTATATTTTGGCTGGCATAACAAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
..........................................................................................................................................................................................................................................AAGGCGCTTGTATATGTGTT................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010000
............................................................................................................................................................................................................................................................................................................................ATTAGAC----------ACT----------------------------------------------------------GCACAC-------------------G------CTC.................................................................................................................................................................................................................................2011.0010000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAACACTGAGA-AAAAAAGAC..............................................................................................................................................................................................2411.0010100000000
................................................................................................................................................................................................................................CTCTACAGTAAAGGCGCTTGTA........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
..........................................................................................................................................................................................................................ATGTCTCTCTACAGTAAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........................................TATCAGCACTCTCAGGGTTACCGTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...................................................................................................................................................................................................................................................................AACATTATATTACCCCGACGACTGC..................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
.............................................................................................................................................................................................GCACACTCTAACACATCCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
......................................................................TTTGGCTGGCATAACAAATGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
.....................................................................TTTTGGCTGGCATAACAAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................................ATTTTGGCTGGCATAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.....................................................................TTTTGGCTGGCATAACAAATGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
........................................................................................................................................................................................CTCTAGCACACTCTAACACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
......................................................................................................................................................................................................................................................................ATTATATTACCCCGACGACTGC..................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
............................................................................................................................................................................................AGCACACTCTAACACATCCACCATCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...................................................................................................................................................................................................................................................GTATATGTGTTCTTTAAAC........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTCAACACTGAGA-AAAAAAGA...............................................................................................................................................................................................2411.0010000100000
.......................................................................................................................................................................................................................................GTAAAGGCGCTTGTATATGTGTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.............................................................................................................................................................................TAACCCTACCACTCTAGCACACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
........................................................................................................................................................................................................................................................................TATATTACCCCGACGACTGCA.................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................AACCCTACCACTCTAGCACACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.....................................................................................................................................................................................................................................................ATATGTGTTCTTTAAACATT.....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................................GCACTCTCAGGGTTACCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.........A--------------TGTTAT---CTAACAACGTATCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000001000
...............................................................................................................................................................................................................................................GCTTGTATATGTGTTCTTTAAAC........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000001
............................................................................................................................................................................................................................................................................................................................ATTAGAC----------ACT----------------------------------------------------------GCACAC-------------------G------CT..................................................................................................................................................................................................................................1911.0010100000000
..........................................................................................................................................................................................CTAGCACACTCTAACACATCCACCATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
......................................................................TTTGGCTGGCATAACAAATGAATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
................................................................GTATATTTTGGCTGGCATAACAAATGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
......................................................................................................................................................................................................................................AGTAAAGGCGCTTGTATATGT...................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAACACTGAGA-AAAAAAGACA.............................................................................................................................................................................................2411.0010100000000
........................................................GGGTTACCGTATATTTTGGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................AGTTTCGAA-------AATTAGAC----------ACT----------------------------------------------------------GCACAC-------------------...........................................................................................................................................................................................................................................2611.0010001000000
............................................................................................................................................................................GTAACCCTACCACTCTAGCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
.....................................................TCAGGGTTACCGTATATTTTGGCTGGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.........................................GTATCAGCACTCTCAGGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010010000000
droPer2
TTTCGAA------------------------------------------A---------------------------------------------------------------------------ATTAGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACT----------------------------------------------------------GCACAC-------------------G------CTCTTAATTAATTGTGTCAACACTGAGA-AAAAAAGACAA-TTTTAATC----------------------------------------------AAAA----------TATTTATAA--------------------------------------------------------------------------------------------T--------CAT------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................AGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACT----------------------------------------------------------GCACAC-------------------G------CTCTT...............................................................................................................................................................................................................................1911.001001000
.TTCGAA------------------------------------------A---------------------------------------------------------------------------ATTAGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACT----------------------------------------------------------GCACAC-------------------G------CT..................................................................................................................................................................................................................................2611.001100000
.................................................A---------------------------------------------------------------------------ATTAGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACT----------------------------------------------------------GCACAC-------------------G------CT..................................................................................................................................................................................................................................2011.001100000
droAna3
TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTAACCCCGA---GGAAAAGACAA-TTTTAATC----------------------------------------------AAAA----------TATTTATAA--------------------------------------------------------------------------------------------T--------CAT------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTAACCCCGA---GGAAAAG................................................................................................................................................................................................2111.001000010
.T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTAACCCCGA---GGAAA..................................................................................................................................................................................................1911.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCCCGA---GGAAAAGAC..............................................................................................................................................................................................2011.001010000
droBip1
CTACCAACTC--------------TCTCT---------------------------------CTCTATATTTATATTGACATTATTTCAGATTATAATTCCTTATAATCTTTATAATTATCTGGGATTTGATGAGAAATAATGTT----ACTT----------------------------------------------------ACATT-------------------TTCAAAATGTGTTTTTA--------------------AT---TTTTAACGACTGCGGTTCTTAA-TC-TAAGTTT------------------------------------------------------A------CGAAC----GT------------ATTTAAGCGAGG-------------------G------CTATCGATCAATTGTGTTAACCCTGAG---AAAAAGACAA-TTTTAATC----------------------------------------------AAAAAGAAAAAA--TATATATAT--------------------------------------------------------------------------------------------T--------TAT--ATTTSizeHit CountTotal NormTotal
No Reads
droKik1
TAGGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATGTAAA---TATATATGTATATATATATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------TATATATATTCATATTTCTCTCTTCACCTTAACTT----------------------------------------------------------------------------TA------SizeHit CountTotal NormTotal
No Reads
droFic1
TTTCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TCACCTATCAT-------------GAATATTTATAAATTGTATATATTTACGTATAAATTTA------TCTATCCATCTT------------TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------SizeHit CountTotal NormTotal
No Reads
droEle1
ATATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATAT----A---TATATATATATATATATATATA------TATATATATATA------------TACT------ATATACTATATACT-------AT---------------------------------------------------------------------------------------------------------------------------------------------ATATCTATACTATTATATATATATACTATATACTATATATAATATACTAAT------------A----TACTT-AATATACTAAT------SizeHit CountTotal NormTotal
No Reads
droRho1
GATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTAACCCTCGG--AAAAAAGACAA-TTTCAATC----------------------------------------------AAAA----------TATTTATAT--------------------------------------------------------------------------------------------T--------CAT------SizeHit CountTotal NormTotal
No Reads
droBia1
GATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTAGCCCCCGGA-GGAAAAGACAA-TTTTAATC----------------------------------------------AAAA----------TATTTATAT--------------------------------------------------------------------------------------------T--------CAT------SizeHit CountTotal NormTotal
No Reads
droTak1
GATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTAACCCCCGGA-GGAAAAGACAA-TTTTAATC----------------------------------------------AAAA----------TATTTATAT--------------------------------------------------------------------------------------------T--------CATTAACTTSizeHit CountTotal NormTotal
No Reads
droEug1
TTTTTTATTT--------------TATTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGAT-------------ACTTGAATAAATA---TATATATATATATATATATATA------TATATATATTTA------------TTTA------ATACACTTCACT--------------------------------------------------------------------------------------------------------------------------------------------------------ACACTTT----------------------------------------------------------------------------TA------SizeHit CountTotal NormTotal
No Reads
dm3
CTTTAA--TT--------------TAATAT---TTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATATTTGGTATATATATAT---------------------ATATATATATATATATATATATTTATATTTACATATATATATATTTAT------------------------------------------------------------------ATACATTTATTAATA----------------------------------------------TATA----------TGT-------------------------------AT-----------------------------------------ATATACATATATATATATATATACATA------TAT------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----------TGT-------------------------------AT-----------------------------------------ATATACATATATATA...........................22100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACATATATATATATATATACAT................25100.2020000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TATATAT---------------------ATATATATATATATA.....................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TAT---------------------ATATATATATATATATATATA...............................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA----------TGT-------------------------------AT-----------------------------------------ATATACATATATATAA..........................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATATATATATACAT................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................GGTATATATATAT---------------------ATATA...............................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................ATATATAT---------------------ATATATATATATATATATAT................................................................................................................................................................................................................................................................................................28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA----------TGT-------------------------------AT-----------------------------------------ATATACATATA...............................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................ATATAT---------------------ATATATATATATATATA...................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATATATATATACA.................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATATATATATATATAC..................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATATATATATATATAC..................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
ATATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATAT----A---TATATATATATATATATATATA------TATATATATGCA------------TGTC------ACTTGCCTGCCACA-------AT--GTTGACGAAGTG-------------------CTAAATTTCAATTTACAGTCAGAATT-------------------------------------------------------ATT-----------------------------------------------------------------------TAAT------------T----TACCC-AA------TAT------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATTTACAGTCAGAATT-------------------------------------------------------ATT-----------------------------------------------------------------------TAAT------------............................2611.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTTCAATTTACAGTCAGAAT..............................................................................................................................................................................2411.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGCCACA-------AT--GTTGACGA..............................................................................................................................................................................................................................2111.00100000000000010000
droSec2
TATATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-ATAT----A---TATATATATATATATATATATA------TATATATATGTA------------TGTC------ACTTGCCTGCCACA-------AT--GTTGACGAAGTG-------------------CTAAATTTCAATTTACAGTCAGAATT-------------------------------------------------------ATT-----------------------------------------------------------------------TAAT------------T----TACTC-AA------TAT------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTAGCCCCCGG--AGAAAAGACAA-TTTTAATC----------------------------------------------AAAA----------TATTTATAT--------------------------------------------------------------------------------------------T--------CAT------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
GATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTAGCCCCCGG--AGAAAA.................................................................................................................................................................................................2411.00100000010000
droEre2
CTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATG------------------------------------------------------------------------------------------------------------------AGCTGAGTTCATG--AGAAAAGACAA-TTTTAATC----------------------------------------------AAAA----------TATTTATAT--------------------------------------------------------------------------------------------T--------CATTAACTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................TCATG------------------------------------------------------------------------------------------------------------------AGCTGAGTTCATG--AGA....................................................................................................................................................................................................2111.0010001000
....GT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATG------------------------------------------------------------------------------------------------------------------AGCTGAGTTCAT..........................................................................................................................................................................................................1911.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTTCATG--AGAAAA.................................................................................................................................................................................................1811.0010000010
....................................................................................................................................................................................................................................................................................................................................TG------------------------------------------------------------------------------------------------------------------AGCTGAGTTCATG--AGAAAAGACAA-TTT........................................................................................................................................................................................2911.0011000000
...AGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATG------------------------------------------------------------------------------------------------------------------AGCTGAGTTCAT..........................................................................................................................................................................................................2011.0010000100
...................................................................................................................................................................................................................................................................................................................................ATG------------------------------------------------------------------------------------------------------------------AGCTGAGTTCATG--AGAAA..................................................................................................................................................................................................2111.0010000100

Generated: 05/17/2015 at 05:05 AM