ID:

dvi_18436

 Coordinate:

scaffold_13049:5251457-5251607 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ12986-cds]; exon [dvir_GLEANR_12914:12]; intron [Dvir\GJ12986-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTATTCAAAAGCCACAGCGAATCGACTTTTATCGATTTTAGTGGAATAAATGTCGACATATTTCGATCAAAATGTGAAGGAATTACTTTAGCTTTTATCTCTGAGATTAACTGTCTGTTATATACCCTTATTTCCCATACCCCTTACCCTTATTCAAACACTCCATTTAAATCTAACCAAATATCTGTCTCCCTTTTGCAGCAACAATCGAGCAGCTCGCCGGACATTAAGGTTACCAGCAACGTGGAATC
**************************************************.(((((......))))).((((..(((((......)))))..))))......(((((.........((((.....................................................)))).........)))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 M047
female body
 M061
embryo
 SRR060679
140x9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 V047
embryo
 SRR060666
160_males_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 V116
male body		 M027
male body		 M028
head
 SRR060667
160_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR1106729
mixed whole adult body
 SRR060684
140x9_0-2h_embryos_total
 SRR1106712
embryo_0-2h
 SRR1106725
embryo_14-16h
 SRR1106727
larvae
 SRR060678
9x140_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 V053
head
 SRR060669
160x9_females_carcasses_total
 SRR1106728
larvae
.....................................................................................................................TTATATACCCTTATTTTCCA.................................................................................................................. 20 1 1 13.00 13 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................ATTATATACCCTTATTTTCCA.................................................................................................................. 21 2 2 10.00 20 19 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................ATATACCCTTATTTTCCA.................................................................................................................. 18 1 1 6.00 6 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TATTATATACCCTTATTTTCCA.................................................................................................................. 22 2 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................ATATCTGAGAGTAACTGT......................................................................................................................................... 18 2 10 4.40 44 0 1 0 0 18 0 0 12 2 1 1 1 0 0 3 2 0 0 0 1 1 1 0 0
......................................................................................................................TATATACCCTTATTTTCCA.................................................................................................................. 19 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GGACATTAAGGTTACCAGCAACGT...... 24 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GAAGCAACAATCGAGCAGCT.................................. 20 1 1 2.00 2 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CAACAATCGAGCAGCTCGCCGG............................ 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGCAACAATCGAGCAGCTCGCCGGAC.......................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CTCGCCGGACATTAAGGTT................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AATCGAGCAGCTCGCCGGA........................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGCCGGACATTAAGGTTA................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TTAAGGTTACCAGCAACGTGGAAT. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ATCGAGCAGCTCGCCGGAC.......................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................GTCCTTTATCGAATTTAGTGGA.............................................................................................................................................................................................................. 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CAATCGAGCAGCTCGCCGGAC.......................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CAACAATCGAGCAGCTCGCCGGAC.......................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AGGTTACCAGCAACGTGG.... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGCCGGACATTAAGGTTACC.............. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CATTAAGGTTACCAGCAACGTG..... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AGGAAGCAACAATCGAGCAGCTCGCC.............................. 26 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AACAATCGAGCAGCTCGCCGGAC.......................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TTAGTGGAATAAATA....................................................................................................................................................................................................... 15 1 20 0.60 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 4 3 0 0 0 0 0
....................................................................................................................ATTATATACCCTTATTTTCCC.................................................................................................................. 21 3 10 0.60 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TTATATACCCTTATTTTCC................................................................................................................... 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATATTATATACCCTTATTTTCC................................................................................................................... 22 3 7 0.43 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TATATACCCTTATGTTCCA.................................................................................................................. 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................ACGGTTACCATGAACGTGGA... 20 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ATCGAGCAGCTCGCCGAGCA......................... 20 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TATTATATACCCTTATTTTC.................................................................................................................... 20 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TTATATACCCTTATTTTC.................................................................................................................... 18 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AATATACCCTTATTTTCCA.................................................................................................................. 19 2 20 0.25 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................AATTATATACCCTTATTTTCCA.................................................................................................................. 22 3 9 0.22 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GATTACAAGCAACCTGGAAT. 20 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................AATTATATACCCTTATTTTCC................................................................................................................... 21 3 16 0.19 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATATATACCCTTATTTTCC................................................................................................................... 19 2 18 0.17 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................ATACCCTTATTCTCCA.................................................................................................................. 16 2 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......AAAGCGACCGTGAATCGAC................................................................................................................................................................................................................................. 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................ATTATATACCCTTGTTTTCCA.................................................................................................................. 21 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TTATATAGCCTTAGTTTCCA.................................................................................................................. 20 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................CCAAAAGGTGAAGGCATTAC..................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TATCTGAGAGTAACTGT......................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................................CATGAAGCAACAATCGAGC...................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CATAAGTTTTCGGTGTCGCTTAGCTGAAAATAGCTAAAATCACCTTATTTACAGCTGTATAAAGCTAGTTTTACACTTCCTTAATGAAATCGAAAATAGAGACTCTAATTGACAGACAATATATGGGAATAAAGGGTATGGGGAATGGGAATAAGTTTGTGAGGTAAATTTAGATTGGTTTATAGACAGAGGGAAAACGTCGTTGTTAGCTCGTCGAGCGGCCTGTAATTCCAATGGTCGTTGCACCTTAG
**************************************************.(((((......))))).((((..(((((......)))))..))))......(((((.........((((.....................................................)))).........)))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 SRR060671
9x160_males_carcasses_total
 SRR060679
140x9_testes_total
 M027
male body		 SRR060665
9_females_carcasses_total
..........................................................................................................................TTGGGAATAAGGGGTATGGGCA........................................................................................................... 22 3 2 1.50 3 3 0 0 0 0 0
..........................................................................................................................TTGGGAATAAAGGGTAATGGGA........................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................CGGCCTGTAATTTGAATGGT............. 20 2 1 1.00 1 0 0 0 1 0 0
.............................................................................................................................GGAATAAGGGGTATGGGCAA.......................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................................................................TCGTTGTTAGCTCGTCGAGCG............................... 21 0 1 1.00 1 0 1 0 0 0 0
.................GCTTAGTTGAAAATAGCTAC...................................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0
............................................................................................................................GGGAATAAGGGGTATGGGC............................................................................................................ 19 2 2 0.50 1 1 0 0 0 0 0
............................................................................................................................GGGAATAAGGGGTATGGGCA........................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................................................................................................................ACAGAAGGAAACCGTAGTTGT............................................. 21 3 6 0.17 1 0 0 0 0 1 0
................CCCTTCGATGAAAATAGCT........................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:5251407-5251657 + dvi_18436 GTATTCAAAAGCCACAGCGAATCGACTTTTATCGATTTTAGTGGAATAAATGTCGACATATTTCGATCAAAATGTGAAGGAATTACTTTAGCTTTTATCTCTGAGATTAACTGTCTGTTATATACCCTTATTTCCCATACCCCTTACCCTTATTCAAACACTCCATTTA--AATCTAACCAAA--TATCTGTCT---CCCTTTTGC---AGCAACAATCGAGCA------------------------------------------GCTCGCCGGACATTAAGGT-TACCAGC-------AA--CGTGGAATC
droMoj3 scaffold_6680:3617823-3617886 + TCTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACTTAC---AGCAACAATCGAGCA------------------------------------------GCTCGCCGGACATCAAGGT-GAGCAGC-------AA--TATGGACTC
droGri2 scaffold_15110:13733260-13733315 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC---AGCAACAATCGAGTA------------------------------------------GCTCACCGGACATTAAGGT-GACCAGC-------GG--CATGGAATC
droWil2 scf2_1100000004768:1038859-1038942 - ACCCC-------------------------------------------------------------------------------------------------------------------------------------------------------AC-------------------TTTA-CTCTACTTCTCT---TCCGCTTAT---AGCAACAATCGAGTA------------------------------------------GCTCACCGGACATCAAGGT-GACCAGC-------AG--CGTTGAATC
dp5 XR_group8:5417594-5417665 - AACG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTTT---TTTCTGTGC---AGCAACAATCGAGCA------------------------------------------GCTCGCCGGACATTAAGGT-TAGCAGC-------AG--CGTGGAGTC
droPer2 scaffold_5915:108-171 + TTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGTGC---AGCAACAATCGAGCA------------------------------------------GCTCGCCGGACATTAAGGT-TAGCAGC-------AG--CGTGGAGTC
droAna3 scaffold_13337:10080378-10080459 - ATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------ACTA-A--TACTTTTCT---TACTCTCAC---AGCAACAGTCGAGCA------------------------------------------GTTCGCCGGACATCAAGGT-AACCAGC-------AG--CGTGGAGTC
droBip1 scf7180000396569:1274349-1274416 + TCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC---CAATCTTGC---AGCAACAGTCGAGCA------------------------------------------GTTCGCCGGACATCAAGGT-AACCAGC-------AG--CGTGGAGTC
droKik1 scf7180000302391:488590-488650 + CCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGT---AGCAACAGTCGAGCA------------------------------------------GCTCGCCTGACATTAAGGT-TACCAGC-------AG--CGTGGAGTC
droFic1 scf7180000454105:1695454-1695552 + CCTCA---------------------------------------------------------------------------------------------------------------------------------------------TCCT-------------TTCGAAAGATCCATACTAAT--TCTTAGCGT---TTTTCCCAC---AGCAACAGTCGAGCA------------------------------------------GTTCGCCGGACATCAAGGT-AACCAGC-------AG--TGTGGAGTC
droEle1 scf7180000491249:1873127-1873179 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---AGCAACAGTCGAGCA------------------------------------------GTTCCCCGGACATCAAGGT-GACCAGC-------AG--CGTGGAGTC
droRho1 scf7180000758409:1120-1197 - ATCCA-------------------------------------------------------------------------------------------------------------------------------------------------------CT--------GA------------A-A-----GCCCCTTCCGCTTTGCGCAGCAGCAAC-----AGCA------------------------------------------GCAGACCCCACAGCAACGTCCACCAAC-----------TGCGATATC
droBia1 scf7180000302428:2733413-2733468 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT---AGCAACAGTCGAGCA------------------------------------------GTTCGCCGGACATCAAGGT-GACCAGC-------AG--CGTGGAGTC
droTak1 scf7180000415667:87738-87841 + TTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTGCGATTCTGCTTTCCCCCTACCTCCCATTTTCCATTTCCCATGTCGCCATTTTCGCACCCTCGCTAATC-TCAATCCAATTTCTGACTTGCTTTTGC
droEug1 scf7180000409466:1094105-1094157 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---AGCAACAGTCGAGCA------------------------------------------GCTCTCCGGATATCAAGGT-GACCAGC-------AG--TGTGGAGTC
dm3 chr3L:3365790-3365860 + ATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTAA---TGTCCTAAC---AGCAACAGTCGAGCA------------------------------------------GTTCGCCGGACATCAAGGT-TACTAGC-------AG--TGTGGAATC
droSim2 3l:3262474-3262526 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---AGCAACAGTCGAGCA------------------------------------------GTTCGCCGGACATCAAGAT-TACCAGC-------AG--TGTGGAATC
droSec2 scaffold_2:3357158-3357210 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---AGCAACAGTCGAGCA------------------------------------------GTTCGCCGGACATCAAGAT-TACCAGC-------AG--TGTGGAATC
droYak3 2R:7894257-7894332 + ATTCA-------------------------------------------------------------------------------------------------------------------------------------------------------AACACATCTTTTATGAACCAAACC----------------------------------AAATATGTAT------------------------------------------TTTCAAAATATATATAAAC-AAAAGAC-------AA--TGTGGTCAC
droEre2 scaffold_4784:6055752-6055804 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---AGCAACAGTCAAGCA------------------------------------------GTTCCCCGGACATCAAGGT-CACCAGT-------AG--TGTAGAATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GTATTCAAAAGCCACAGCGAATCGACTTTTATCGATTTTAGTGGAATAAATGTCGACATATTTCGATCAAAATGTGAAGGAATTACTTTAGCTTTTATCTCTGAGATTAACTGTCTGTTATATACCCTTATTTCCCATACCCCTTACCCTTATTCAAACACTCCATTTA--AATCTAACCAAA--TATCTGTCT---CCCTTTTGC---AGCAACAATCGAGCA------------------------------------------GCTCGCCGGACATTAAGGT-TACCAGC-------AA--CGTGGAATCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................GGACATTAAGGT-TACCAGC-------AA--CGT......2412.002001000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................CAACAATCGAGCA------------------------------------------GCTCGCCGG......................................2211.001000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................AGCAACAATCGAGCA------------------------------------------GCTCGCCGGAC....................................2611.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................CTCGCCGGACATTAAGGT-T..........................1911.001000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................AATCGAGCA------------------------------------------GCTCGCCGGA.....................................1911.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................CGCCGGACATTAAGGT-TA.........................1811.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................TTAAGGT-TACCAGC-------AA--CGTGGAAT.2411.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................ATCGAGCA------------------------------------------GCTCGCCGGAC....................................1911.001010000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................CAATCGAGCA------------------------------------------GCTCGCCGGAC....................................2111.001000000000000000010000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CAACAATCGAGCA------------------------------------------GCTCGCCGGAC....................................2411.001100000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................AGGT-TACCAGC-------AA--CGTGG....1811.001000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................................................CGCCGGACATTAAGGT-TACC.......................2011.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................CATTAAGGT-TACCAGC-------AA--CGTG.....2211.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................AACAATCGAGCA------------------------------------------GCTCGCCGGAC....................................2311.001000000000000000000000000000000000000000000000000000000000000010
.....................................TTAGTGGAATAAATA.....................................................................................................................................................................................................................................................................15200.6012000000000000000000000000000000000000000050000000000004030000000
droMoj3
TCTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACTTAC---AGCAACAATCGAGCA------------------------------------------GCTCGCCGGACATCAAGGT-GAGCAGC-------AA--TATGGACTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................GGACATCAAGGT-GAGCAG.....................1812.002000002
........................................................................................................................................................................................................................ATCGAGCA------------------------------------------GCTCGCCGGACATC.................................2211.001000010
.......................................................................................................................................................................................................................AATCGAGCA------------------------------------------GCTCGCCGGAC....................................2011.001100000
..............................................................................................................................................................................................................................................................................GCCGGACATCAAGGT-GAGCAG.....................2111.001100000
..........................................................................................................................................................................................................................CGAGCA------------------------------------------GCTCGCCGGACATCA................................2111.001000001
..............................................................................................................................................................................................................................................................................GCCGGACATCAAGGT-GAGC.......................1911.001100000
................................................................................................................................................................................................................................................................................CGGACATCAAGGT-GAGCAGC-------AA--TAT......2511.001001000
.............................................................................................................................................................................................................................................................................CGCCGGACATCAAGGT-GAGC.......................2011.001100000
...............................................................................................................................................................................................................................................................................CCGGACATCAAGGT-GAGC.......................1811.001100000
..............................................................................................................................................................................................................................................................................GCCGGACATCAAGGT-GAGCAGC-------.............2211.001000001
droGri2
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC---AGCAACAATCGAGTA------------------------------------------GCTCACCGGACATTAAGGT-GACCAGC-------GG--CATGGAATCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ACCCC-------------------------------------------------------------------------------------------------------------------------------------------------------AC-------------------TTTA-CTCTACTTCTCT---TCCGCTTAT---AGCAACAATCGAGTA------------------------------------------GCTCACCGGACATCAAGGT-GACCAGC-------AG--CGTTGAATCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................GCTCACCGGACATCAAGGT-...........................1915.00502030
...............................................................................................................................................................................................................................A------------------------------------------GCTCACCGGACATCAAGGT-...........................2015.00501310
.............................................................................................................................................................................................................................GTA------------------------------------------GCTCACCGGACATCAAGGT-...........................2214.00401210
..........................................................................................................................................................................................................................CGAGTA------------------------------------------GCTCACCGGACATCAAGGT-...........................2513.00302010
.......................................................................................................................................................................................................................................................................................CAAGGT-GACCAGC-------AG--CGTTGAAT.2312.00200110
..........................................................................................................................................................................................................................CGAGTA------------------------------------------GCTCACCGGACATC.................................2012.00210010
........................................................................................................................................................................................................................................................................................AAGGT-GACCAGC-------AG--CGTTGAATC2312.00200002
............................................................................................................................................................................................................................AGTA------------------------------------------GCTCACCGGACATCAA...............................2011.00100010
....................................................................................................................................................................................................................AACAATCGAGTA------------------------------------------GCTCACC........................................1911.00101000
..................................................................................................................................................................................................................................................................................GACATCAAGGT-GACCAGC-------AG--C........2111.00100010
..........................................................................................................................................................................................................................................................................GCTCACCGGACATCAAGG.............................1811.00100010
.......................................................................................................................................................................................................................................................................................CAAGGT-GACCAGC-------AG--CGTTGA...2111.00100010
.......................................................................................................................................................................................................................AATCGAGTA------------------------------------------GCTCACCGGACATCAAGGT-...........................2811.00110000
...............................................................................................................................................................................................................................A------------------------------------------GCTCACCGGACATCAAGG.............................1911.00100010
........................................................................................................................................................................................................................ATCGAGTA------------------------------------------GCTCACCGGACA...................................2011.00110000
........................................................................................................................................................................................................................ATCGAGTA------------------------------------------GCTCACCGGACATCAAGG.............................2611.00100100
........................................................................................................................................................................................................................ATCGAGTA------------------------------------------GCTCACCGGACATCAAGGT-...........................2711.00100010
...........................................................................................................................................................................................................................................................................................GT-GACCAGC-------AG--CGTTGAATC2011.00100010
....................................................................................................................................................................................................................AACAATCGAGTA------------------------------------------GCTCACCGGACAT..................................2511.00110000
.....................................................................................................................................................................................................................ACAATCGAGTA------------------------------------------GCTCACCGGA.....................................2111.00100010
..............................................................................................................................................................................................................................................................................................GACCAGC-------AG--CGTTGAATC1811.00100100
....................................................................................................................................................................................................................AACAATCGAGTA------------------------------------------GCTCACCGGAC....................................2311.00100100
............................................................................................................................................................................................................................................................................................T-GACCAGC-------AG--CGTTGAAT.1811.00100100
....................................................................................................................................................................................................................................................................................CATCAAGGT-GACCAGC-------AG--C........1911.00100010
..............................................................................................................................................................................................................................................................................ACCGGACATCAAGGT-GACCAGC-------.............2211.00101000
.............................................................................................................................................................................................................................GTA------------------------------------------GCTCACCGGACATCAAGG.............................2111.00100100
dp5
AACG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTTT---TTTCTGTGC---AGCAACAATCGAGCA------------------------------------------GCTCGCCGGACATTAAGGT-TAGCAGC-------AG--CGTGGAGTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................GCAACAATCGAGCA------------------------------------------GCTCGCC........................................2113.0030210000000
.....................................................................................................................................................................................................................................................................................ATTAAGGT-TAGCAGC-------AG--CGT......2012.0020020000000
.....................................................................................................................................................................................................................................................................................ATTAAGGT-TAGCAGC-------AG--CGTG.....2112.0020000200000
.................................................................................................................................................................................................................AGCAACAATCGAGCA------------------------------------------GCTC...........................................1911.0010000100000
............................................................................................................................................................................................................................................................................................T-TAGCAGC-------AG--CGTGGAGT.1811.0010100000000
................................................................................................................................................................................................................................................................................CGGACATTAAGGT-TAGCAGC-------AG--CGT......2511.0010100000000
.....................................................................................................................................................................................................................................................................................ATTAAGGT-TAGCAGC-------AG--CGTGGAGT.2511.0010100000000
....................................................................................................................................................................................................................................................................................CATTAAGGT-TAGCAGC-------AG--CGT......2111.0010100000000
.................................................................................................................................................................................................................AGCAACAATCGAGCA------------------------------------------GCTCGCC........................................2211.0010010000000
..................................................................................................................................................................................................................................................................................GACATTAAGGT-TAGCAGC-------AG--CGT......2311.0010010000000
...................................................................................................................................................................................................................................................................................ACATTAAGGT-TAGCAGC-------AG--C........2011.0010100000000
....................................................................................................................................................................................................................................................................................CATTAAGGT-TAGCAGC-------AG--CGTG.....2211.0010010000000
.................................................................................................................................................................................................................AGCAACAATCGAGCA------------------------------------------GCTCGCCGGA.....................................2511.0010100000000
.....................................................................................................................................................................................................................................................................................ATTAAGGT-TAGCAGC-------AG--C........1811.0010100000000
.............................................................................................................................................................................................................................................................................CGCCGGACATTAAGGT-TAGC.......................2011.0010100000000
droPer2
TTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGTGC---AGCAACAATCGAGCA------------------------------------------GCTCGCCGGACATTAAGGT-TAGCAGC-------AG--CGTGGAGTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................GGT-TAGCAGC-------AG--CGTGGAG..1911.001010000
.................................................................................................................................................................................................................AGCAACAATCGAGCA------------------------------------------GCTCGCC........................................2211.001100000
...........................................................................................................................................................................................................................GAGCA------------------------------------------GCTCGCCGGACATTAAGG.............................2311.001010000
...........................................................................................................................................................................................................................................................................................GT-TAGCAGC-------AG--CGTGGAGTC2011.001000010
..................................................................................................................................................................................................................................................................................GACATTAAGGT-TAGCAGC-------AG--CGT......2311.001100000
....................................................................................................................................................................................................................................................................................CATTAAGGT-TAGCAGC-------AG--CGTGGG...2411.001001000
.......................................................................................................................................................................................................................AATCGAGCA------------------------------------------GCTCGCCGGAC....................................2011.001100000
.............................................................................................................................................................................................................................................................................CGCCGGACATTAAGGT-TAGC.......................2011.001100000
..................................................................................................................................................................................................................GCAACAATCGAGCA------------------------------------------GCTCGC.........................................2011.001000001
droAna3
ATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------ACTA-A--TACTTTTCT---TACTCTCAC---AGCAACAGTCGAGCA------------------------------------------GTTCGCCGGACATCAAGGT-AACCAGC-------AG--CGTGGAGTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................GCAACAGTCGAGCA------------------------------------------GTTCGCC........................................2112.002020000
.......................................................................................................................................................................................................................AGTCGAGCA------------------------------------------GTTCGCCGGACATCAA...............................2511.001000100
..................................................................................................................................................................................................................................................................................GACATCAAGGT-AACCAGC-------AG--CGTG.....2411.001000010
..........................................................................................................................................................................................................................................................................GTTCGCCGGACATCAAGGT-A..........................2011.001100000
.................................................................................................................................................................................................................................................................................GGACATCAAGGT-AACCAGC-------AG--CGT......2411.001010000
.............................................................................................................................................................................................................................................................................CGCCGGACATCAAGGT-AACCAGC-------.............2311.001010000
...........................................................................................................................................................................................................................................................................................GT-AACCAGC-------AG--CGTGGAGT.1911.001000010
......................................................................................................................................................................................................................CAGTCGAGCA------------------------------------------GTTCGCCGGA.....................................2011.001000001
..........................................................................................................................................................................................................................CGAGCA------------------------------------------GTTCGCCGGACATC.................................2011.001010000
..................................................................................................................................................................................................................................................................................GACATCAAGGT-AACCAGC-------AG--CGTGGAGT.2811.001000010
..........................................................................................................................................................................................................................................................................GTTCGCCGGACATCAAGGT-...........................1911.001000010
..........................................................................................................................................................................................................................................................................................GGT-AACCAGC-------AG--CGTGGAGTC2111.001010000
.................................................................................................................................................................................................................................................................................GGACATCAAGGT-AACCAGC-------AG--CGTGGAGC.2911.001010000
...................................................................................................................................................................................................................CAACAGTCGAGCA------------------------------------------GTTCGCC........................................2011.001000010
..................................................................................................................................................................................................................................................................................GACATCAAGGT-AACCAGC-------AG--C........2111.001100000
..........................................................................................................................................................................................................................CGAGCA------------------------------------------GTTCGCCGGACATCAAG..............................2311.001000010
...............................................................................................................................................................................................................................A------------------------------------------GTTCGCCGGACATCAAGGT-AACC.......................2411.001100000
.....................................................................................................................................................................................................................ACAGTCGAGCA------------------------------------------GTTCGCCGGA.....................................2111.001000001
..................................................................................................................................................................................................................GCAACAGTCGAGCA------------------------------------------GTTCGCCGGA.....................................2411.001010000
.......................................................................................................................................................................................................................................................................................CAAGGT-AACCAGC-------AG--CGTGGA...2111.001100000
.................................................................................................................................................................................................................................................................................GGACATCAAGGT-AACCAGC-------AG--CGTGGA...2711.001010000
....................................................................................................................................................................................................................................................................................CATCAAGGT-AACCAGC-------AG--CGTGGAGT.2611.001010000
droBip1
TCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC---CAATCTTGC---AGCAACAGTCGAGCA------------------------------------------GTTCGCCGGACATCAAGGT-AACCAGC-------AG--CGTGGAGTCSizeHit CountTotal NormTotal
No Reads
droKik1
CCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGT---AGCAACAGTCGAGCA------------------------------------------GCTCGCCTGACATTAAGGT-TACCAGC-------AG--CGTGGAGTCSizeHit CountTotal NormTotal
No Reads
droFic1
CCTCA---------------------------------------------------------------------------------------------------------------------------------------------TCCT-------------TTCGAAAGATCCATACTAAT--TCTTAGCGT---TTTTCCCAC---AGCAACAGTCGAGCA------------------------------------------GTTCGCCGGACATCAAGGT-AACCAGC-------AG--TGTGGAGTCSizeHit CountTotal NormTotal
No Reads
droEle1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---AGCAACAGTCGAGCA------------------------------------------GTTCCCCGGACATCAAGGT-GACCAGC-------AG--CGTGGAGTCSizeHit CountTotal NormTotal
No Reads
droRho1
ATCCA-------------------------------------------------------------------------------------------------------------------------------------------------------CT--------GA------------A-A-----GCCCCTTCCGCTTTGCGCAGCAGCAAC-----AGCA------------------------------------------GCAGACCCCACAGCAACGTCCACCAAC-----------TGCGATATCSizeHit CountTotal NormTotal
No Reads
droBia1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT---AGCAACAGTCGAGCA------------------------------------------GTTCGCCGGACATCAAGGT-GACCAGC-------AG--CGTGGAGTCSizeHit CountTotal NormTotal
No Reads
droTak1
TTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTGCGATTCTGCTTTCCCCCTACCTCCCATTTTCCATTTCCCATGTCGCCATTTTCGCACCCTCGCTAATC-TCAATCCAATTTCTGACTTGCTTTTGCSizeHit CountTotal NormTotal
No Reads
droEug1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---AGCAACAGTCGAGCA------------------------------------------GCTCTCCGGATATCAAGGT-GACCAGC-------AG--TGTGGAGTCSizeHit CountTotal NormTotal
No Reads
dm3
ATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTAA---TGTCCTAAC---AGCAACAGTCGAGCA------------------------------------------GTTCGCCGGACATCAAGGT-TACTAGC-------AG--TGTGGAATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................GAGCA------------------------------------------GTTCGCCGGACATCAAGGT-TA.........................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................AACAGTCGAGCA------------------------------------------GTTCGCCGGAC....................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................................................................................................................................................AACAGTCGAGCA------------------------------------------GTTCGCCG.......................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................ACAGTCGAGCA------------------------------------------GTTCGCCG.......................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000
...................................................................................................................................................................................................................CAACAGTCGAGCA------------------------------------------GTTCGCC........................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................A------------------------------------------GTTCGCCGGACATCAAGGT-...........................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000
........................................................................................................................................................................................................................GTCGAGCA------------------------------------------GTTCGCCGGACATCAAGGT-...........................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CAACAGTCGAGCA------------------------------------------GTTCGCCGGA.....................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
.................................................................................................................................................................................................................AGCAACAGTCGAGCA------------------------------------------GTTCGCCGGAC....................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................AACAGTCGAGCA------------------------------------------GTTCGCC........................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................................................................................................A------------------------------------------GTTCGCCGGACATCAAG..............................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................AGTCGAGCA------------------------------------------GTTCGCCGGACATC.................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CAACAGTCGAGCA------------------------------------------GTTCG..........................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................AGCAACAGTCGAGCA------------------------------------------GTTCGC.........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................CGAGCA------------------------------------------GTTCGCCGGAC....................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................GCAACAGTCGAGCA------------------------------------------GTTCGCC........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................................................................................................CAAGGT-TACTAGC-------AG--TGT......1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TCCTAAC---AGCAACAGTCGAGC..........................................................................................2111.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CAACAGTCGAGCA------------------------------------------GTTCGCCG.......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................................................................................................................................................................................GTTCGCCGGACATCAAGGT-...........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....................................................................................................................................................................................................................AACAGTCGAGCA------------------------------------------GTTCGCCGGA.....................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................ACAGTCGAGCA------------------------------------------GTTCGCCGGA.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................AAGGT-TACTAGC-------AG--TGTGG....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................................CGAGCA------------------------------------------GTTCGCCGGACATCAAG..............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................ACAGTCGAGCA------------------------------------------GTTCGCC........................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................GTCGAGCA------------------------------------------GTTCGCCGGAC....................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.................................................................................................................................................................................................................AGCAACAGTCGAGCA------------------------------------------GTTCGCCGGA.....................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................GTCGAGCA------------------------------------------GTTCGCCGGA.....................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................C---AGCAACAGTCGAGCA------------------------------------------GTTCGCC........................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................AACAGTCGAGCA------------------------------------------GTTCGCCGGACATCA................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.......................................................................................................................................................................................................................AGTCGAGCA------------------------------------------GTTCGCCGGA.....................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................GTCGAGCA------------------------------------------GTTCGCCGGACAT..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................GTCGAGCA------------------------------------------GTTCGCCGGACA...................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---AGCAACAGTCGAGCA------------------------------------------GTTCGCCGGACATCAAGAT-TACCAGC-------AG--TGTGGAATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................A------------------------------------------GTTCGCCGGACATCAAGAT-TACC.......................2412.00201100000000000000
....................................................................................................................................................................................................................AACAGTCGAGCA------------------------------------------GTTCGCCGGAC....................................2312.00200200000000000000
.......................................................................................................................................................................................................................AGTCGAGCA------------------------------------------GTTCGCCGGAC....................................2012.00200200000000000000
...............................................................................................................................................................................................................................A------------------------------------------GTTCGCCGGACATCAAGAT-TACCAGC-------.............2711.00100100000000000000
...................................................................................................................................................................................................................CAACAGTCGAGCA------------------------------------------GTTCGCCGGACAT..................................2611.00100100000000000000
........................................................................................................................................................................................................................GTCGAGCA------------------------------------------GTTCGCCGGA.....................................1811.00100100000000000000
.................................................................................................................................................................................................................AGCAACAGTCGAGCA------------------------------------------GTT............................................1811.00100010000000000000
...................................................................................................................................................................................................................CAACAGTCGAGCA------------------------------------------GTTCGCCGGG.....................................2311.00100100000000000000
......................................................................................................................................................................................................................CAGTCGAGCA------------------------------------------GTTCGCCGGAC....................................2111.00101000000000000000
...............................................................................................................................................................................................................................A------------------------------------------GTTCGCCGGACATCAAG..............................1811.00101000000000000000
..................................................................................................................................................................................................................GCAACAGTCGAGCA------------------------------------------GTTCGCCGGAC....................................2511.00100100000000000000
........................................................................................................................................................................................................................................................................................AAGAT-TACCAGC-------AG--TGTGGAAT.2211.00100010000000000000
................................................................................................................................................................................................................................................................................CGGACATCAAGAT-TACCAGC-------AG--T........2311.00101000000000000000
..........................................................................................................................................................................................................................CGAGCA------------------------------------------GTTCGCCGGACATCAAG..............................2311.00100010000000000000
droSec2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---AGCAACAGTCGAGCA------------------------------------------GTTCGCCGGACATCAAGAT-TACCAGC-------AG--TGTGGAATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................ATCAAGAT-TACCAGC-------AG--TGTGGAAT.2515.0051121
..........................................................................................................................................................................................................................................................................................GAT-TACCAGC-------AG--TGTGGAAT.2015.0050041
....................................................................................................................................................................................................................................................................................CATCAAGAT-TACCAGC-------AG--TGTGGAAT.2613.0030120
.................................................................................................................................................................................................................AGCAACAGTCGAGCA------------------------------------------GTTCGCC........................................2212.0020110
........................................................................................................................................................................................................................................................................................AAGAT-TACCAGC-------AG--TGTGGAAT.2211.0010010
...................................................................................................................................................................................................................CAACAGTCGAGCA------------------------------------------GTTCGCC........................................2011.0010010
...........................................................................................................................................................................................................................GAGCA------------------------------------------GTTCGCCGGACATCAA...............................2111.0011000
...................................................................................................................................................................................................................................................................................ACATCAAGAT-TACCAGC-------AG--T........2011.0010010
....................................................................................................................................................................................................................AACAGTCGAGCA------------------------------------------GTTCGCCGGA.....................................2211.0010010
..........................................................................................................................................................................................................................................................................GTTCGCCGGACATCAAGAT-TACCAGC-------.............2611.0010010
...........................................................................................................................................................................................................................GAGCA------------------------------------------GTTCGCCGGACATC.................................1911.0010010
.................................................................................................................................................................................................................AGCAACAGTCGAGCA------------------------------------------GTT............................................1811.0010010
............................................................................................................................................................................................................................................................................................T-TACCAGC-------AG--TGTGGAATC1911.0010010
.........................................................................................................................................................................................................................................................................................AGAT-TACCAGC-------AG--TGTGGAAT.2111.0010100
....................................................................................................................................................................................................................AACAGTCGAGCA------------------------------------------GTTCGCCG.......................................2011.0010001
..................................................................................................................................................................................................................................................................................GACATCAAGAT-TACCAGC-------AG--TGTGGAAT.2811.0010100
....................................................................................................................................................................................................................................................................................CATCAAGAT-TACCAGC-------AG--TGT......2111.0010010
.....................................................................................................................................................................................................................................................................................ATCAAGAT-TACCAGC-------AG--TGT......2011.0010010
...........................................................................................................................................................................................................................................................................................AT-TACCAGC-------AG--TGTGGAAT.1911.0010010
...................................................................................................................................................................................................................CAACAGTCGAGCA------------------------------------------GTTCGCCG.......................................2111.0010100
..................................................................................................................................................................................................................GCAACAGTCGAGCA------------------------------------------GTTCGCCGGAC....................................2511.0011000
..........................................................................................................................................................................................................................................................................GTTCGCCGGACATCAAGAT-TACCAGC-------A............2711.0010010
..................................................................................................................................................................................................................GCAACAGTCGAGCA------------------------------------------GTTCGCCG.......................................2211.0010010
...................................................................................................................................................................................................................CAACAGTCGAGCA------------------------------------------GTTCGCCGGAC....................................2411.0010010
.......................................................................................................................................................................................................................AGTCGAGCA------------------------------------------GTTCGCCGGA.....................................1911.0010010
...............................................................................................................................................................................................................................A------------------------------------------GTTCGCCGGACATCAAG..............................1811.0010010
..........................................................................................................................................................................................................................................................................................GAT-TACCAGC-------AG--TGTGGA...1811.0011000
droYak3
ATTCA-------------------------------------------------------------------------------------------------------------------------------------------------------AACACATCTTTTATGAACCAAACC----------------------------------AAATATGTAT------------------------------------------TTTCAAAATATATATAAAC-AAAAGAC-------AA--TGTGGTCACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---AGCAACAGTCAAGCA------------------------------------------GTTCCCCGGACATCAAGGT-CACCAGT-------AG--TGTAGAATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................A------------------------------------------GTTCCCCGGACATCAAGGT-...........................2012.0021100000
.................................................................................................................................................................................................................................................................................GGACATCAAGGT-CACCAGT-------AG--TGT......2411.0010000100
....................................................................................................................................................................................................................................................................................CATCAAGGT-CACCAGT-------AG--TGTAG....2311.0010000100
.................................................................................................................................................................................................................AGCAACAGTCAAGCA------------------------------------------GTT............................................1811.0010000010
............................................................................................................................................................................................................................AGCA------------------------------------------GTTCCCCGGACATCAAGGT-...........................2311.0010000010
....................................................................................................................................................................................................................AACAGTCAAGCA------------------------------------------GTTCCCCGGA.....................................2211.0010100000
..........................................................................................................................................................................................................................................................................GTTCCCCGGACATCAAGGT-...........................1911.0010000100
........................................................................................................................................................................................................................GTCAAGCA------------------------------------------GTTCCCCGGA.....................................1811.0011000000
...........................................................................................................................................................................................................................AAGCA------------------------------------------GTTCCCCGGACATCAAGGT-...........................2411.0010100000
....................................................................................................................................................................................................................AACAGTCAAGCA------------------------------------------GTTCCCCGGACAT..................................2511.0010000010
.................................................................................................................................................................................................................................................................................GGACATCAAGGT-CACCAGT-------AG--T........2211.0010000100
.....................................................................................................................................................................................................................................................................................ATCAAGGT-CACCAGT-------AG--T........1811.0010000010
.....................................................................................................................................................................................................................................................................................ATCAAGGT-CACCAGT-------AG--TGTAGA...2311.0010001000
...........................................................................................................................................................................................................................AAGCA------------------------------------------GTTCCCCGGACATCAAGGT-C..........................2511.0010000010
..............................................................................................................................................................................................................................................................................CCCGGACATCAAGGT-CACCACG-------.............2211.0010001000
.....................................................................................................................................................................................................................................................................................ATCAAGGT-CACCAGT-------AG--TGTAG....2211.0010001000
....................................................................................................................................................................................................................................................................................CATCAAGGT-CACCAGT-------AG--TGT......2111.0010000100
.....................................................................................................................................................................................................................................................................................ATCAAGGT-CACCAGT-------AG--TGTAGAAT.2511.0010000100

Generated: 05/17/2015 at 04:56 AM