ID:

dvi_18395

 Coordinate:

scaffold_13049:5112997-5113147 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.8 -29.8 -29.4

Flybase annnotation

exon [dvir_GLEANR_12352:2]; CDS [Dvir\GJ12381-cds]; intron [Dvir\GJ12381-in]

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+
(TG)nSimple_repeatSimple_repeat+
mature
star
  1. scaffold_12875:429362-429382 +
  2. scaffold_12875:7850437-7850457 -
  3. scaffold_12875:14262914-14262934 -
  4. scaffold_12963:19054472-19054492 -
  5. dvi_18395  scaffold_13049:5113126-5113146 -
  6. scaffold_13049:8305659-8305679 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGATCTTACGGCTGACGAGGTGGCCCTCGAGCAGCAGCGCATAGCGAAAGGTATGCACACACATACACACACACACGTACACGTGCTGTATATTTGTATGCGTATATATTTTGTGAGTGTGCAGTTGTATGTGTGTATGCGTGTCGGTGTGTGCGTAGGTAGGATGTAGTTATCGTCTGTGGCAGTTTGGCTTTCAGTTCAGTTGAGTCAGAATCGAGCGTCGGTCGCGCGGTCGCTTCCACGCTTCTTTC
***************************************************...((((((((((((((((((.(((((((.(((((.........))))).)))).......))).)))))....)))))))))))..))*************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M028
head
 M047
female body
 GSM1528803
follicle cells		 M027
male body		 SRR060654
160x9_ovaries_total
 SRR1106720
embryo_8-10h
 SRR1106726
embryo_14-16h
 SRR1106721
embryo_10-12h
 SRR060658
140_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060679
140x9_testes_total
 SRR1106717
embryo_6-8h
 SRR1106718
embryo_6-8h
 SRR1106722
embryo_10-12h
 SRR1106723
embryo_12-14h
 SRR1106730
embryo_16-30h
 V116
male body		 SRR060669
160x9_females_carcasses_total
 SRR060680
 9xArg_testes_total
 M061
embryo
 V053
head
.....................................................................................................................................................................................................................TCGAGCGTCGGTCGCGC..................... 17 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GTCGGTCGCGCGGTCGCT.............. 18 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................AGAATCGAGCGTCGGTCGC....................... 19 0 1 2.00 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TCAGAATCGAGCGTCGGTCGCG...................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CTCGAGCGTCGGTCGCGCGGTCGCT.............. 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TCGCGCGGTCGCTTCCAC......... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTCGCGCGGTCGCTTCCA.......... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GTCAGAATCGAGCGTC............................. 16 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TCAGAATCGAGCGTCGGTC......................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CAGAATCGAGCGTCGGTCGCGCGG................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AGTTCAGTTGAGTCAGAA...................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................AGTTGTATGTGTGTATGC............................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TTGAGTCAGAATCGAGCGTCGGTCGCGCGGTC................. 32 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AGTCAGAATCGAGCGTCGGTCG........................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................ATCGAGCGTCGGTCGCGC..................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCAGTTCAGTTGAGTCAGAATCGAG................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AGAATCGAGCGTCGGTCG........................ 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AGTTCAGTTGAGTCAGAATCGA.................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GCGTCGGTCGCGCGGTCGCT.............. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ATCGAGCGTCGGTCGCGCGGTC................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTGAGTGTGCAGTTGTATG........................................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGAGTCAGAATCGAGCGTCGGTCGC....................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GAGCGTCGGTCGCGCGGTCGC............... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................GAGCAGCAGCGCATAGCGAA........................................................................................................................................................................................................... 20 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................TGGCCATCGAGCAGCAGC..................................................................................................................................................................................................................... 18 1 4 0.50 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GGCTGAAGAGGTGCCCCT................................................................................................................................................................................................................................ 18 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TATGCACACACATACACACAC................................................................................................................................................................................... 21 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................TCGGTGGCGCGGTCGGATC............ 19 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........TGGCTGATGAGGTGCCCCT................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TGTGCGAAGGTAGGCT...................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGGCAGTTTGGTTTTCTGGT.................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CCTAGAATGCCGACTGCTCCACCGGGAGCTCGTCGTCGCGTATCGCTTTCCATACGTGTGTGTATGTGTGTGTGTGCATGTGCACGACATATAAACATACGCATATATAAAACACTCACACGTCAACATACACACATACGCACAGCCACACACGCATCCATCCTACATCAATAGCAGACACCGTCAAACCGAAAGTCAAGTCAACTCAGTCTTAGCTCGCAGCCAGCGCGCCAGCGAAGGTGCGAAGAAAG
***************************************************************************************************************...((((((((((((((((((.(((((((.(((((.........))))).)))).......))).)))))....)))))))))))..))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 SRR060656
9x160_ovaries_total
 SRR060679
140x9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060659
Argentina_testes_total
 M027
male body		 V047
embryo
 M047
female body
 SRR1106719
embryo_8-10h
 SRR1106723
embryo_12-14h
 SRR060660
Argentina_ovaries_total
 V053
head
.........CCGACTGCTCCGCCGGGGGCTCGTCGTCG..................................................................................................................................................................................................................... 29 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................GTGTGTGCATGTGCACGACAT................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CGCACAGCCACACACGCATCC............................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................TGCATGTGCACGACATATAAA............................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................GCTGTCCATACGAGTGTG............................................................................................................................................................................................. 18 2 4 0.75 3 0 0 0 0 3 0 0 0 0 0 0 0
..................................................................TGATTGTGTGCACGTGCACGAC................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................CAGTCTTGGCTAGCAGCCTG......................... 20 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................TGTGCATGTGCACCACC.................................................................................................................................................................. 17 2 14 0.14 2 0 0 0 0 0 0 0 0 1 1 0 0
..............................................................................................................................................................................................................CATTCTGAGCTAGCAGCC........................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................GTGTGTGTATGTGTGTGT.................................................................................................................................................................................. 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................ACGTGTGTGTATGTGTGTGTGT................................................................................................................................................................................ 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................ACGTGTGTGTATGTGTGT.................................................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:5112947-5113197 - dvi_18395 G-GATCTTACGGCTGACGAGGTGGCCCTCGAGCAGCAGCGCATAGCGAAAGGTATGCACACACATACACA-----------------------------------------------------CACACACGTACACGT----------GCTGTAT----AT----TTGTATGCGTATA--TATTT-----TG------TG------------A----------GTGT------GCA------GTTGTATGTGTG------TATGCGTGTCGGTGTGTGCGTAGGTAGGATGTAGTTATCGTCTGTGGCAG--TTTGGCTTTCAGTTC------AGT---TGAGTCAGAATCGAGCGTCGGTCGCGCGGTCGC-TTCCACGCTTCTTTC-
droMoj3 scaffold_6680:3493706-3493960 - G-GATCTCACGGCTGATGAGGTGGCCCTCGAGCAGCAGCGCATAGCGAAAGGTATGCACAAACACACACA-------------CACACACA-------------------C---------------------------------ACGTGCTGTGT----AT----TTGTATATATGTATGTATGC-----TG------TG------------A----------GTGT------GCACTTGCGTTTGTATGTGTGCCTGTGAATGCGTGTCGGTGTGTGCGTAGGTAGGATGTAGTTATCGTCTGTGGCAG--TTTGGCTTTCAGTTC------AGT---TGAGTCAGAATCGAGCGTCG--------GTCGC-TTCCACGCTTCTTTC-
droGri2 scaffold_15110:9855317-9855557 + G-GATCTCAGCGCCGATGAGGTGGCCCTCGAGCAGCAGCGCATAGCGAAAGGTATGCACACACACACAGA-------------GACACAC---GTA----TATAAATATTTTGTAT--------------TTGTATG-------------------------------TATGTATGTAT---------GC-T------TG------------A----------GTTT------GCA------TTTGTATGTATG------TGTGCGTGTCGGTGTGTGCGTAGGTAGGATGTAGTTATCGTCTGTGGCAG--TTTGGCTTTCAGTTC------AGT---TGAGTCAGAATCGAGCGTCG--------GTCGC-TTCCACGCTT------
droWil2 scf2_1100000004729:2259771-2260035 + dwi_1944 G-GATCTTACCGCCGAGGAGGTGGCAATCGAGCAGCAGCGCATAGCAAAAGGTATGTACAAATACAGACA-------------GACATATG-------------------CCGCTCTTGT---------------------------------AT----AT----ATGTATGTATGTAT---------AT-TTGAGCCCA------------AGCGTCGGTGTGTGT------GTATGTGTGTGTGTTTATTTGGATGTGTATG----TGTGTGTGTGCGTAGGTAGGATGTAGTTATCGTCTGTGGCAG--TTTGGCTTTCAGTTC------AGT---TGAGTCAGAATCGAGCGTCGGTT-----GTCGT-TTCTACGCGTCTGTC-
dp5 XR_group3a:1306321-1306546 - A-GATCTATCCGCCGCGGAGGCGCTCGAGGAGAAACGTTTAGCCGCCAAAGGTATGTGT------ACCCACA--C-------------A------------------------------------------AATACTCTCGCACCCATCCGGCAT----AT----ATGTATATATGTAC---------GC-G------CC------------A--------------GCT---GCA------ATGGTATG---------------GTGTCGGTGTGTGCGTAGGTAGGATGTAGTT--TGTCTGTGGCAGTGTTTAACTTTCAGTTC------GGT---TGAGTCAGAATCGAGCGGCG--------GTCGTTTTCCACGCTT------
droPer2 scaffold_23:1337825-1338050 - A-GATCTATCCGCCGCGGAGGCGCTCGAGGAGAAACGTTTAGCCGCCAAAGGTATGTGT------ACCCACA--C-------------A------------------------------------------AATACTCTCGCACCCATCCGGCAT----AT----ATGTATATATGTAC---------GC-G------CC------------A--------------GCT---GCA------ATGGTATG---------------GTGTCGGTGTGTGCGTAGGTAGGATGTAGTT--TGTCTGTGGCAGTGTTTAACTTTCAGTTC------GGT---TGAGTCAGAATCGAGCGGCG--------GTCGTTTTCCACGCTT------
droAna3 scaffold_13337:9449548-9449760 - C-GATCTAACCGCCGAGGAAGCTCTCGAGGAAAAACGCTTGGCCGCCAAAGGTACGC-C------ACCCATA--C-------------AT--------------------------------ATAGACGGTTACACGCTCGCACAC-----ACACACACTC--------ACA--------CAGAC-----AG------ACAGACACGGTG----------------------------------C------------------A----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTGGTCTTTCAGTTTCAAAAAAAATTTTC------AATCGAGCG-----------GTCGC-CTCCACGCCGCTTCTT
droBip1 scf7180000396544:260462-260667 - GCGATCTAACCGCCGAGGAAGCTCTCGAGGAAAAACGCTTGGCCGCCAAAGGTACGC-C------ACCCATA--C-------------AT--------------------------------ATAGACGGTTACACGCTCGCACAC-----ACACACACAC--------AGACACCG---------------------AC----A--------------------------CGGC--------TG------------------A----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTGGTCTTTCAGTTTCAAAA-AAATTTTC------AATCGAGCG-----------GTTGC-CTCCACGCCGCTTCT-
droKik1 scf7180000302441:1074431-1074654 - A-GATCTGTCCGCCGAAGAAGCCCAACTGGAGAAGCAGTTGGCCGCCAAAGGTGCAAACACATTAA-----------------CATATATATCGTACCCATAT------A------------ATACATACTTACACGCTTACACAT-----ACATAGAGAC--------ACA--------CACCC-----GG------ACA--------------------------GCT-------------GT------------------G----CACGTGTGTGCGTAGGTAGGATGTTGT-----------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG-----------GTCGC-TTCCACGCCTC-----
droFic1 scf7180000454105:959135-959340 + A-GATCTGTCCGCCGAAGAGGCCAAAACGGAGAAACAGTTGGCCGCCAAAGGTCGGTACATACATACATA-------------CATATATA-----------T------A------------ATACAAACTTACACGCTCGCACAC-----ACACACACAA--------------------AGAAAAGC-AG------CC------------A--------------GCGGCGGCA------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG---------------------------------
droEle1 scf7180000491249:2748331-2748515 - A-GATCTTTCCGCCGATGAGGCTAA------------GTTGGCCGCCAAAGGTA--TATATATGTACATA-----C--------CTA-------------TATAATTATA------------ATACATACTTACACGCTCGCTCAC-----ACA--------------------------TAGACAACC-AG------CC------------A-------------------GGCA------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCACAATCGAGCG---------------------------------
droRho1 scf7180000758401:30862-31067 - A-GATCTTTCCGCTGAGGAAGCCAAAACGGAGAAACAGTTGGCCGCCAAAGGTCGGTACATCCATATATACATA-C--------CTA-------------TAT------A------------ATACATACTTACACGCTCGCACAC-----AGACAC--------------A--------TAGACAACA-CG------CC------------A--------------GCGGCGGCA------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG---------------------------------
droBia1 scf7180000302428:9410564-9410773 + G-GATCTTTCCGCCGAAGAGGCCAAAACGGAGAAACTGTTGGCCGCCAAAGGTCGGTACATATGTACATA-----T--------CTA-------------CATAA---------------GCATACATACGTACACGCTCGCACCA-----ACACACACGC--------GCACACA----TAG---------------CCG---AC------G--------------GCGGCGGCG------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG---------------------------------
droTak1 scf7180000415857:429283-429493 + A-GATCTCTCCGCCGAAGAGGCCAAAACGGAGAAACTGTTGGCCGCCAAAGGTCGGTACATACTTACGTA-----CATACATATCTACA-------------T------A------------ATACATACTTACACGCTCGCACACGTAC-AGACAT--AC----ATACAAA--------CA---------G------CC------------A-----------------GCGGCA------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG---------------------------------
droEug1 scf7180000409466:358856-359066 + A-GATCTGTCCGCTGAAGAGGCCAAAACGGAGAAATTGTTGGCCGCCAAAGGTTGGTACATATATACATA-----C--------CTA-------------TAT--------------AATATATACATACTTACACGCTCGAACAC-----ACACACA--------CGCACA--------TAGAC-----AG------ACA---------GCG--------------GCGGCGGCA------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG---------------------------------
dm3 chr3L:2632072-2632304 + A-GATCTATCCGCCGAAGAGGCCAAAACGGAGAAACTGTTGGCCTCCAAAGGTCGGTACATATGTACAAG-----CATACATACATACATA-------------------TCGCTGTAGTACATACATACTTACACGCTCGCACAC-----GCACACACAC----ATGCATA--------TAG---------------CCC---ACGGTGGCG--------------GCGGCGGCA------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG---------------------------------
droSim2 3l:2519409-2519639 + dsi_3767 T-GATCTCTCCGCCGAAGAGGCCAAAACGGAGAAACTGTTGGCCTCCAAAGGTCGGTACATATGTACAAA-----CATGCATACATACATA-------------------TCGCTGTAGTACATACATATTTACACGCTCGCACAC-----ACACAT--AC----ATGCACA--------TAG---------------CCC---ACGGTGGCG--------------GCGGCGGCA------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG---------------------------------
droSec2 scaffold_2:2655606-2655836 + T-GATCTCTCCGCCGAAGAGGCCAAAACGGAGAAACTGTTGGCCTCCAAAGGTCGGTACATATGTACAAA-----CATGCATACATACATA-------------------TCGCTGTAGTACATACATACTTACACGCTCGCACAC-----ACACAT--GC----ATGCACA--------TAG---------------CCC---ACGGTGGCG--------------GCGGCGGCA------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG---------------------------------
droYak3 3L:9304176-9304405 - A-GATCTATCCGCTGAAGAGGCCAAAACGGAGAAACTGTTGGCCTCCAAAGGTCGGTACATATGTACATA-----CAAACATACATACATA-------------------GCGCTCTAGTACATACATATTTACACGCTCGCACAC-----ACACACACAT----ATGCACA--------TAG---------------CCA---ACGGTG-----------------GCGGCGGCA------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG---------------------------------
droEre2 scaffold_4784:2651168-2651400 + A-GATCTATCCGCCGAAGAGGCCAAAACGGAGAAACTGTTGGCCTCCAAAGGTCGGTTCATTTGTACATA-----CATACAAACATACATA--------------------CGCTGTAGTACATACATACTTACACGCTCGCACAC-----AAACACACACACACATGCACA--------TAG---------------CCA---ACGGTG-----------------GCGGCGGCA------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG---------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
G-GATCTTACGGCTGACGAGGTGGCCCTCGAGCAGCAGCGCATAGCGAAAGGTATGCACACACATACACA-----------------------------------------------------CACACACGTACACGT----------GCTGTAT----AT----TTGTATGCGTATA--TATTT-----TG------TG------------A----------GTGT------GCA------GTTGTATGTGTG------TATGCGTGTCGGTGTGTGCGTAGGTAGGATGTAGTTATCGTCTGTGGCAG--TTTGGCTTTCAGTTC------AGT---TGAGTCAGAATCGAGCGTCGGTCGCGCGGTCGC-TTCCACGCTTCTTTC-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................TCGAGCGTCGGTCGCGC.......................1712.002000000000000000000000000000000000000000000000000000000000000002
...................................................................................................................................................................................................................................................................................................................................................................GTCGGTCGCGCGGTCGC-T...............1812.002000000000000000000000000000000000000000000000000001000000010000
.........................................................................................................................................................................................................................................................................................................................................................AGAATCGAGCGTCGGTCGC.........................1912.002000000000000000000000000000000000000000000000000100000100000000
.......................................................................................................................................................................................................................................................................................................................................................TCAGAATCGAGCGTCGGTCGCG........................2212.002020000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TCGCGCGGTCGC-TTCCAC..........1811.001000010000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................GTCGCGCGGTCGC-TTCCA...........1811.001000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................GTCAGAATCGAGCGTC...............................1611.001000000000000000000000000000000000000000000000100000000000000000
.......................................................................................................................................................................................................................................................................................................................................................TCAGAATCGAGCGTCGGTC...........................1911.001010000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................CAGAATCGAGCGTCGGTCGCGCGG.....................2411.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AGTTC------AGT---TGAGTCAGAA........................................1811.001000000001000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................A------GTTGTATGTGTG------TATGC............................................................................................................................1811.001000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................T---TGAGTCAGAATCGAGCGTCGGTCGCGCGGTC...................3211.001000000000000000000000000000000000000000000000000100000000000000
.....................................................................................................................................................................................................................................................................................................................................................AGTCAGAATCGAGCGTCGGTCG..........................2211.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................................ATCGAGCGTCGGTCGCGC.......................1811.001100000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TCAGTTC------AGT---TGAGTCAGAATCGAG...................................2511.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................AGAATCGAGCGTCGGTCG..........................1811.001000000000000000000000000000000000000000000000000010000000000000
..................................................................................................................................................................................................................................................................................................................................AGTTC------AGT---TGAGTCAGAATCGA....................................2211.001000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................GCGTCGGTCGCGCGGTCGC-T...............2011.001100000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................ATCGAGCGTCGGTCGCGCGGTC...................2211.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TG------TG------------A----------GTGT------GCA------GTTGTATG...........................................................................................................................................2011.001000010000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................TGAGTCAGAATCGAGCGTCGGTCGC.........................2511.001000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................................................................................................................................................GAGCGTCGGTCGCGCGGTCGC-................2111.001000000000000000000000000000000000000000000000000000100000000000
.............................GAGCAGCAGCGCATAGCGAA....................................................................................................................................................................................................................................................................................................................................................2020.501000000000000000000010000000000000000000000000000000000000000000
....................................................TATGCACACACATACACA-----------------------------------------------------CAC.......................................................................................................................................................................................................................................................................2160.171000000000000000000000000000000100000000000000000000000000000000
droMoj3
G-GATCTCACGGCTGATGAGGTGGCCCTCGAGCAGCAGCGCATAGCGAAAGGTATGCACAAACACACACA-------------CACACACA-------------------C---------------------------------ACGTGCTGTGT----AT----TTGTATATATGTATGTATGC-----TG------TG------------A----------GTGT------GCACTTGCGTTTGTATGTGTGCCTGTGAATGCGTGTCGGTGTGTGCGTAGGTAGGATGTAGTTATCGTCTGTGGCAG--TTTGGCTTTCAGTTC------AGT---TGAGTCAGAATCGAGCGTCG--------GTCGC-TTCCACGCTTCTTTC-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................TCAGAATCGAGCGTCG--------GTCGC-T...............2211.001000010
............................................................................................................................................................................................................................................................................................................................GCTTTCAGTTC------AGT---TGAGTCAGA.........................................2311.001000001
...................................................................................................................................................................................................................................................................................................................................................TGAGTCAGAATCGAGCGTCG--------G.....................2111.001000010
droGri2
G-GATCTCAGCGCCGATGAGGTGGCCCTCGAGCAGCAGCGCATAGCGAAAGGTATGCACACACACACAGA-------------GACACAC---GTA----TATAAATATTTTGTAT--------------TTGTATG-------------------------------TATGTATGTAT---------GC-T------TG------------A----------GTTT------GCA------TTTGTATGTATG------TGTGCGTGTCGGTGTGTGCGTAGGTAGGATGTAGTTATCGTCTGTGGCAG--TTTGGCTTTCAGTTC------AGT---TGAGTCAGAATCGAGCGTCG--------GTCGC-TTCCACGCTT------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
G-GATCTTACCGCCGAGGAGGTGGCAATCGAGCAGCAGCGCATAGCAAAAGGTATGTACAAATACAGACA-------------GACATATG-------------------CCGCTCTTGT---------------------------------AT----AT----ATGTATGTATGTAT---------AT-TTGAGCCCA------------AGCGTCGGTGTGTGT------GTATGTGTGTGTGTTTATTTGGATGTGTATG----TGTGTGTGTGCGTAGGTAGGATGTAGTTATCGTCTGTGGCAG--TTTGGCTTTCAGTTC------AGT---TGAGTCAGAATCGAGCGTCGGTT-----GTCGT-TTCTACGCGTCTGTC-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................GGTGGCAATCGAGCAGCAGCGCATA.........................................................................................................................................................................................................................................................................................................................................................2511.00100010
..............................................................................................................................................................................................................................................................................................................................................................CGAGCGTCGGTT-----GTCGT-T...............1811.00110000
.......................GCAATCGAGCAGCAGCGCATAGC.......................................................................................................................................................................................................................................................................................................................................................2311.00100100
...................................................................................................................................................................................................................................................................................................................CAG--TTTGGCTTTCAGTTC------AGT---..................................................2111.00100010
.............................................................................................................................................................................................................................................................................................................................................AGT---TGAGTCAGAATCGAGCGTCGGTT-----G.....................2711.00100010
..................................................................................................................................................................................................................................................................................................................................AGTTC------AGT---TGAGTCAGAA........................................1811.00100010
...................................................................................................................................................................................................................................................................................................................................................................GTCGGTT-----GTCGT-TTCTACGC........2011.00100001
dp5
A-GATCTATCCGCCGCGGAGGCGCTCGAGGAGAAACGTTTAGCCGCCAAAGGTATGTGT------ACCCACA--C-------------A------------------------------------------AATACTCTCGCACCCATCCGGCAT----AT----ATGTATATATGTAC---------GC-G------CC------------A--------------GCT---GCA------ATGGTATG---------------GTGTCGGTGTGTGCGTAGGTAGGATGTAGTT--TGTCTGTGGCAGTGTTTAACTTTCAGTTC------GGT---TGAGTCAGAATCGAGCGGCG--------GTCGTTTTCCACGCTT------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................TGAGTCAGAATCGAGCGGCG--------GT....................2212.0020000000002
.......ATCCGCCGCGGAGGCGCTCGA.........................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................GTCAGAATCGAGCGGCG--------GTCGTT................2311.0010100000000
..........................................................T------ACCCACA--C-------------A------------------------------------------AATACTCTCG........................................................................................................................................................................................................................................................2011.0010100000000
droPer2
A-GATCTATCCGCCGCGGAGGCGCTCGAGGAGAAACGTTTAGCCGCCAAAGGTATGTGT------ACCCACA--C-------------A------------------------------------------AATACTCTCGCACCCATCCGGCAT----AT----ATGTATATATGTAC---------GC-G------CC------------A--------------GCT---GCA------ATGGTATG---------------GTGTCGGTGTGTGCGTAGGTAGGATGTAGTT--TGTCTGTGGCAGTGTTTAACTTTCAGTTC------GGT---TGAGTCAGAATCGAGCGGCG--------GTCGTTTTCCACGCTT------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
C-GATCTAACCGCCGAGGAAGCTCTCGAGGAAAAACGCTTGGCCGCCAAAGGTACGC-C------ACCCATA--C-------------AT--------------------------------ATAGACGGTTACACGCTCGCACAC-----ACACACACTC--------ACA--------CAGAC-----AG------ACAGACACGGTG----------------------------------C------------------A----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTGGTCTTTCAGTTTCAAAAAAAATTTTC------AATCGAGCG-----------GTCGC-CTCCACGCCGCTTCTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....TCTAACCGCCGAGGAAGCTCTCGAG........................................................................................................................................................................................................................................................................................................................................................................2511.001000010
droBip1
GCGATCTAACCGCCGAGGAAGCTCTCGAGGAAAAACGCTTGGCCGCCAAAGGTACGC-C------ACCCATA--C-------------AT--------------------------------ATAGACGGTTACACGCTCGCACAC-----ACACACACAC--------AGACACCG---------------------AC----A--------------------------CGGC--------TG------------------A----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTGGTCTTTCAGTTTCAAAA-AAATTTTC------AATCGAGCG-----------GTTGC-CTCCACGCCGCTTCT-SizeHit CountTotal NormTotal
No Reads
droKik1
A-GATCTGTCCGCCGAAGAAGCCCAACTGGAGAAGCAGTTGGCCGCCAAAGGTGCAAACACATTAA-----------------CATATATATCGTACCCATAT------A------------ATACATACTTACACGCTTACACAT-----ACATAGAGAC--------ACA--------CACCC-----GG------ACA--------------------------GCT-------------GT------------------G----CACGTGTGTGCGTAGGTAGGATGTTGT-----------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG-----------GTCGC-TTCCACGCCTC-----SizeHit CountTotal NormTotal
No Reads
droFic1
A-GATCTGTCCGCCGAAGAGGCCAAAACGGAGAAACAGTTGGCCGCCAAAGGTCGGTACATACATACATA-------------CATATATA-----------T------A------------ATACAAACTTACACGCTCGCACAC-----ACACACACAA--------------------AGAAAAGC-AG------CC------------A--------------GCGGCGGCA------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG---------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
A-GATCTTTCCGCCGATGAGGCTAA------------GTTGGCCGCCAAAGGTA--TATATATGTACATA-----C--------CTA-------------TATAATTATA------------ATACATACTTACACGCTCGCTCAC-----ACA--------------------------TAGACAACC-AG------CC------------A-------------------GGCA------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCACAATCGAGCG---------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
A-GATCTTTCCGCTGAGGAAGCCAAAACGGAGAAACAGTTGGCCGCCAAAGGTCGGTACATCCATATATACATA-C--------CTA-------------TAT------A------------ATACATACTTACACGCTCGCACAC-----AGACAC--------------A--------TAGACAACA-CG------CC------------A--------------GCGGCGGCA------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG---------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
G-GATCTTTCCGCCGAAGAGGCCAAAACGGAGAAACTGTTGGCCGCCAAAGGTCGGTACATATGTACATA-----T--------CTA-------------CATAA---------------GCATACATACGTACACGCTCGCACCA-----ACACACACGC--------GCACACA----TAG---------------CCG---AC------G--------------GCGGCGGCG------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG---------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
A-GATCTCTCCGCCGAAGAGGCCAAAACGGAGAAACTGTTGGCCGCCAAAGGTCGGTACATACTTACGTA-----CATACATATCTACA-------------T------A------------ATACATACTTACACGCTCGCACACGTAC-AGACAT--AC----ATACAAA--------CA---------G------CC------------A-----------------GCGGCA------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG---------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
A-GATCTGTCCGCTGAAGAGGCCAAAACGGAGAAATTGTTGGCCGCCAAAGGTTGGTACATATATACATA-----C--------CTA-------------TAT--------------AATATATACATACTTACACGCTCGAACAC-----ACACACA--------CGCACA--------TAGAC-----AG------ACA---------GCG--------------GCGGCGGCA------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG---------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
A-GATCTATCCGCCGAAGAGGCCAAAACGGAGAAACTGTTGGCCTCCAAAGGTCGGTACATATGTACAAG-----CATACATACATACATA-------------------TCGCTGTAGTACATACATACTTACACGCTCGCACAC-----GCACACACAC----ATGCATA--------TAG---------------CCC---ACGGTGGCG--------------GCGGCGGCA------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG---------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..GATCTATCCGCCGAAGAGGCCAAAAC.........................................................................................................................................................................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AGTTT------AACTTTTCAGTCAGAATCGAGC..................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000012000001000000000000000
....................GCCAAAACGGAGAAACTG...............................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................AAAACGGAGAAACTGTTGGC..........................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................GTGCGTAGGTAGGATGTT-------------GTA................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AGTTT------AACTTTTCAGTCAGAATCGAG...................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...............................................................................................................................................................................................................................................................................GTGTGTGCGTAGGTAGGATG..................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...........................................................................................................................................................................A--------TAG---------------CCC---ACGGTGGCG--------------GCGGC.............................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
..............GAAGAGGCCAAAACGGAGAAACTGT..............................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AGTTT------AACTTTTCAGTCAGAATCG.....................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.......................................................................................................................................................................................................................................................................G----CACGTGTGTGCGTAGGTAGGATGTT-------------G..................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000001000000000000000000000
.......................................................................................................................................................................................................................................................................G----CACGTGTGTGCGTAGGTAGGATG..................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100
....................................................................................................................................................................................................................................................T------------------G----CACGTGTGTGCGTAGGTAGT.....................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.......................AAAACGGAGAAACTGTTGGA..........................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................T------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------G..................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................................................................................................................................................................................................................................GGCA------GTT------------------G----CACGTGTGTGCGT............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..GATCTATCCGCCGAAGAGGCC..............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................GATGTT-------------GTAG--TTTGTCTTTCAT.................................................................2211.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................GTGTGCGTAGGTAGGATG..................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................T------------------G----CACGTGTGTGCGTAGGTAG......................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
..........CGCCGAAGAGGCCAAAACGGA......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................CACGTGTGTGCGTAGGTAGGAT...................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.........................................GCCTCCAAAGGTCGGTACAT........................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............AAGAGGCCAAAACGGAGAA...................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............................................AAAGGTCGGTACATATGTACA.................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................CGTGTGTGCGTAGGTAGGAT...................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................................................................................................................GCGGCA------GTT------------------G----CACGTGTGTGC..............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................T-------------GTAG--TTTGTCTTTCAGTTT------A.......................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.................................AACTGTTGGCCTCCAAAGGT................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AGGCCAAAACGGAGAAACTGT..............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
A-GATCTATCCGCCGAAGAGGCC..............................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................ACGGAGAAACTGTTGGCCT........................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................G----CACGTGTGTGCGTAGGTAGGA....................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TGTGTGCGTAGGTAGGATG..................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..................AGGCCAAAACGGAGAAACTGTT.............................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.....................CCAAAACGGAGAAACTGTTGGC..........................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................GTGTGTGCGTAGGTAGGATGTT-------------GT.................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................G----CACGTGTGTGCGTAGGTAGGATGTT-------------...................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................ATA-------------------TCGCTGTAGTACATACA......................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................CAGTTT------AACTTTTCAGTCAG..........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
......................CAAAACGGAGAAACTGTTGGCC.........................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TTTTCAGTCAGAATCGAGC..................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................CAGTTT------AACTTTTCAGTCAGAATCGA....................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................CGGCGGCA------GTT------------------G----CACGTG...................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TTTTCAGTCAGAATCGAGCG---------------------------------2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CGGAGAAACTGTTGGCCTC.......................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................A-------------------TCGCTGTAGTACATACATAC...................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................GTGTGTGCGTAGGTAGGATGTT-------------GG.................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GCCAAAACGGAGAAACTGT..............................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.........................................................................................................................................................ACACACAC----ATGCATA--------TAG---------------CC.............................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................GTAGGTAGGATGTT-------------GTAG--TTT..........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TGTAGTACATACATACTTACGT.............................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................TGTAGTACATACATACTTACGTT............................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................GGTGGCG--------------GCGGCGGCA------GT.................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................CATACTTACACGCTCGCACAC-----A.............................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
T-GATCTCTCCGCCGAAGAGGCCAAAACGGAGAAACTGTTGGCCTCCAAAGGTCGGTACATATGTACAAA-----CATGCATACATACATA-------------------TCGCTGTAGTACATACATATTTACACGCTCGCACAC-----ACACAT--AC----ATGCACA--------TAG---------------CCC---ACGGTGGCG--------------GCGGCGGCA------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG---------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................TTTTCAGTCAGAATCGAGC..................................1911.00101000000000000000
..........................ACGGAGAAACTGTTGGC..........................................................................................................................................................................................................................................................................................................................................................1711.00100000010000000000
...............................................AAAGGTCGGTACATATGTACAAA-----..........................................................................................................................................................................................................................................................................................................................2311.00100000000000010000
......................CAAAACGGAGAAACTGTT.............................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
..................................................................................................................................TTACACGCTCGCACA....................................................................................................................................................................................................................................................1530.33100000001000000000
..............................................................................................................................................................................................................GGTGGCG--------------GCGGCGGC..........................................................................................................................................................15200.20400000000130000000
droSec2
T-GATCTCTCCGCCGAAGAGGCCAAAACGGAGAAACTGTTGGCCTCCAAAGGTCGGTACATATGTACAAA-----CATGCATACATACATA-------------------TCGCTGTAGTACATACATACTTACACGCTCGCACAC-----ACACAT--GC----ATGCACA--------TAG---------------CCC---ACGGTGGCG--------------GCGGCGGCA------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG---------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
A-GATCTATCCGCTGAAGAGGCCAAAACGGAGAAACTGTTGGCCTCCAAAGGTCGGTACATATGTACATA-----CAAACATACATACATA-------------------GCGCTCTAGTACATACATATTTACACGCTCGCACAC-----ACACACACAT----ATGCACA--------TAG---------------CCA---ACGGTG-----------------GCGGCGGCA------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG---------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................GGCGGCA------GTT------------------G----CACGTGT..................................................................................................................1811.00101000000000
............................GGAGAAACTGTTGGCCTCCAA....................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...................................................................................................................................................................................................................................................................................GTGCGTAGGTAGGATGTT-------------GTAG--T............................................................................2311.00100100000000
droEre2
A-GATCTATCCGCCGAAGAGGCCAAAACGGAGAAACTGTTGGCCTCCAAAGGTCGGTTCATTTGTACATA-----CATACAAACATACATA--------------------CGCTGTAGTACATACATACTTACACGCTCGCACAC-----AAACACACACACACATGCACA--------TAG---------------CCA---ACGGTG-----------------GCGGCGGCA------GTT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------GTAG--TTTGTCTTTCAGTTT------AACTTTTCAGTCAGAATCGAGCG---------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................GGCCAAAACGGAGAAACTGTT.............................................................................................................................................................................................................................................................................................................................................................2111.0010000100
................................AAACTGTTGGCCTCCAAAGA.................................................................................................................................................................................................................................................................................................................................................2011.0011000000
...................................................................................................................................................................................................................................................TT------------------G----CACGTGTGTGCGTAGGTAGGATGTT-------------G..................................................................................2911.0010000100
.................................AACTGTTGGCCTCCAAAG..................................................................................................................................................................................................................................................................................................................................................1811.0010000010

Generated: 05/17/2015 at 04:41 AM