dvi_18389

CDS [Dvir\GJ12384-cds]; exon [dvir_GLEANR_12355:5]; CDS [Dvir\GJ12384-cds]; exon [dvir_GLEANR_12355:4]; intron [Dvir\GJ12384-in]

##################################################----------------------------------------------------------------################################################## TGGACGTGGTGGCCACTGTCTACCATGCCCTGGACATAACCAAAACTTTGGTAGGTTTTAGTAAATTCTGCCTGCCCTTTGGAGATTCTATATGAAGTTTTATTTCCTGTGCAGTCCCTGGAAGATACCTTCGATTTTGTGGGCGTCGAGTCGGATGATCTGAC ************************************************.................(((.........((((..(((.....)))..)))).........)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	M061 embryo	V116 male body	SRR060667 160_females_carcasses_total	SRR060671 9x160_males_carcasses_total	SRR060665 9_females_carcasses_total	V047 embryo	SRR060664 9_males_carcasses_total	SRR060668 160x9_males_carcasses_total	SRR060669 160x9_females_carcasses_total	SRR060678 9x140_testes_total	V053 head	SRR060682 9x140_0-2h_embryos_total	SRR060660 Argentina_ovaries_total
..........GGCCACTGTCTACCATGCCCTGGAC.................................................................................................................................	25	0	1	10.00	10	8	2	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................GATACCTTCGATTTTGTGGGCGT..................	23	0	1	2.00	2	1	0	0	1	0	0	0	0	0	0	0	0	0	0
.............CACTGTCTACCATGCCCTGGA..................................................................................................................................	21	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0
..........GGCCACTGTCTACCATGCCCTG....................................................................................................................................	22	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GGCCACTGTCTACCATGCCCTGGA..................................................................................................................................	24	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACCTTCGATTTTGTGGGCGT..................	21	0	1	2.00	2	0	0	0	0	0	1	0	0	0	1	0	0	0	0
.......................................................................................................................GGAAGATACCTTCGATTTTGTGGGC....................	25	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GGCCACTGTCTACCATGCCCTGG...................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GATTTTGTGGGCGTCGAGTC............	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GATTTTGTGGGCGTCGAGTCGGA.........	23	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........GGCCACTGTCTACCATGCC.......................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CACTGTCTGCCATGCCCTGGA..................................................................................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................GTCGAGTCGGATGATCTGAC	20	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................CTTCGATTTTGTGGGCGT..................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GGCTACTGTCTACCATGCCCTGGAC.................................................................................................................................	25	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................ATACCTTCGATTTTGTGGGCGT..................	22	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................GAGACCTTCGATTTTGTGGGCGT..................	23	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...................CTACCATGCCCTGGACATA..............................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................GATACCTTCGATTTTTTGGGC....................	21	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................ATACCTTCGATTTTGTGGGC....................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................ATACCTTCGATTTTGTGGGCGTCGA...............	25	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................GATTTTGTGGGCGTCGAGT.............	19	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................TTTGTCCCTGGAAGATACCTTC................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................TGTCTACCATGCCCTGGACATAACC...........................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ACTGTCTACCATGCCCTGGA..................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GATTTTGTGGGCGTCGAGTCGGAT........	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CGGCCACTGTCTACCATGCC.......................................................................................................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GGTGGCCACTGTCTACCATGCCCTGGAC.................................................................................................................................	28	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................CCTTCGATTTTGTGGGCGTCGAGTC............	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTAGGTTTTAGTAAATTCTGCCTGCCCT......................................................................................	28	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................ATACCTTCGATTTTGTGGGCGTCGG...............	25	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................ATTTTGTGGGCGTCGAGTCGGATGAT.....	26	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
............CCACTGTCTACCATGCCCTGGA..................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................CCTTCGATTTTGTGGGCGTCGAGTCGG..........	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................AGATACCTTCGATTTTGTGGGCGT..................	24	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................CCCTTTGGAGATTCTATATGA.....................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........GGCCACTGTCTACCATGC........................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CTACCATGCCCTGGACATAACCAAAA.......................................................................................................................	26	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................AAGATACCTTCGATTTTGTGGGCGT..................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GCCACTGTCTACCATGCC.......................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................TTCGATTTTGTGGGCGTCGAGTCG...........	24	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................GATACCTTCGATTTTGTGGGC....................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................TTCGATTTTGTGGGCGTCGA...............	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................TGTCCCTGGAAGATACCTTC................................	20	1	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............CACTGTCTACCATGCCCTG....................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TTGTGGGCGTCGAGTCGGATGATC....	24	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................ATCCTTCGATTTTGTGGGC....................	19	2	4	0.25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................AACCCGAACTTTGGTAGGG............................................................................................................	19	3	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................GATTTTGTGGGTGTCGGG..............	18	2	9	0.11	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................GATTTTGTGGGCGTGGTG..............	18	2	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1

ACCTGCACCACCGGTGACAGATGGTACGGGACCTGTATTGGTTTTGAAACCATCCAAAATCATTTAAGACGGACGGGAAACCTCTAAGATATACTTCAAAATAAAGGACACGTCAGGGACCTTCTATGGAAGCTAAAACACCCGCAGCTCAGCCTACTAGACTG ************************************************.................(((.........((((..(((.....)))..)))).........)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M028 head	M047 female body	V053 head
.............................................................................................................ACGTCAGGTACCTAGTATGGA..................................	21	3	2	0.50	1	1	0	0
.................................................................................................................................................AGCTCAGCCTAGCAGCCTG	19	3	16	0.06	1	0	1	0
.............ATGACAGTTGCTACGGGAC....................................................................................................................................	19	3	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_13049:5090146-5090309 -	dvi_18389	TGGACGTGGTGGCCACTGTCTACCATGCCCTGGACATAACCAAAACTTTGGTAGGTT------TTAGTAA-ATT-CTG-------------CCTGCCCT--TTGGAGA--------------------------TTCTATAT-----GAAGTTTTA--TTT-CCTGTGCAGTCCCTGGAAGATACCTTCGATTTTGTGGGCGTCGAGTCGGATGATCT----------GAC
droMoj3	scaffold_6680:3471297-3471460 -		TGGATATAGTGGCCACCGTCTATCATGGCATGGACATATCAAAGACTTTGGTAAGGC-----------CA-AAA-ATGGGAACTCAGAGAGATAGA---------GAA--------------------------ATCTATAT-----AA-GTGGTC--TTC-CATCAACAGACACTGAATGATGCTTTTGAGTTTGTGGGCGCCACATTGGATCCTAC----------AAC
droGri2	scaffold_15110:9875382-9875541 +		TGGACGTTGTTGCCACTGTCTATCATGGTCTGGATATATCCCATACTTTGGTAAGAT------TGAGAAAATAG-CCGT----------CTCCCTA---------CGA-----TTT---------------GTTTCAAATGT-----TAA---------TC-ATTATGTAGTCCCTAGATGATGCTTTCAATTTTATTGGCGCCGCACCGGTTTCAAT----------GCC
droWil2	scf2_1100000004729:2280836-2281011 +		TGGATGTGGTGGCGACTGTATATCATGGTCTGGACCTAAGTCACACATTGGTAAGCC-----------AA-CTG-TTG-------------TTGTTTAT-GCCT------GA-TGTGCCACCAATAATCTCTCTCTCTCCCGTTCTCTTCC-T--G--TTC--TGTTTTAGACCTATCAAGAAGCCTTTGAATACATAGGAGCTACACTTAGCA--------------CAC
dp5	XR_group3a:1288592-1288763 -		TGGACGTGGTTGCCAGCGTGTATCACGGCATTGACCTAAGCCACACGACGGTAAGGAGATCTGGCA------GG----GAAA---------CCAAGCAC--ACAAAGA--------------------------TTAAATAATAA--TAAA-T--AATTCC-CTTTAATAGTCGCTGAGGGATGCATTAGATTATATTGGAGCTTATGT---CGATCCGGAC---TCTCAA
droAna3	scaffold_13337:9431981-9432131 -		TGGATGTGGTGGCTAGTGTGTATCATGGACTTGATTTGAGCCATACAACGGTGGGTA-----------GT-ACT-AT---------------ACA---------AAGAC----TTC---------------TCCTTAAACAG-----GAAT-T--A--ATT-CTCTTTTAGTCACTGGATGATGCATTTAACTACATAGGAGTCGTGGAC---AATTC----------GGA
droBip1	scf7180000396544:243056-243223 -		TGGATGTAGTGGCTAGTGTGTATCATGGAATTGATTTGAGCCACACAATGGTGGGTA-----------G--TCT-CTT-------------ATACA--------AACAC----TTC--------------CTCCTTAAACATGAATTTGTT-T--C--TTC--TTTTTAAGACACTGGATGATGCATTTAGCTACGTAGGAGCCGAGGCTAGC---CAGGACGAGCCGTAC
droKik1	scf7180000302441:1053876-1054039 -		TCGATGTGGTGGCCTCTGTGTATCATGGAATTGACTTAAGCCATACTATGGTGGGTG------CCA------GG----AAAACACTTTAAGTTATA---------GAA-----TTT---------------ACTTT-AATAA-----TAAATCTTC--TCC-CCTTTGCAGTCCCTGGAAGAAACACTCAGCTATATTGGAGGAACGGC---CGATAC----------CGA
droFic1	scf7180000454105:976565-976709 +		TCGACGTGGTGGCCTCTGTGTATCATGGAATCGACTTGAGCCACACAACGGTAATTA-----------AA-AAGGA---------------TCTCATA-ATGGG------GC-TTC------------------ATGAGTAA-----TGAA-C--C--TTA-CTTCCACAGTCCCTGCAAGATGCACTCGACTACATTGGGGTGGT----------------------AAC
droEle1	scf7180000491249:2726948-2727100 -		TCGATGTGGTGGCCTCAGTGTATCATGGACTCGACTTAAGCCATACTATGGTGGGAA-----------AA-TCA-GTGC----------TTTTCCATGA--------------TGT------------------ATAAACTA-----TAGT-T--C--TTACTTTTTTTAGTCCATGCAAGACGCGTTTGATTACATCGGAATAACGTAT---GACCC----------TAC
droRho1	scf7180000758401:12066-12220 -		TCGATGTGGTGGCCTCAGTGTATCATGGAATCGACTTAACCCATACTACGGTTAGAA-----------AA-GTA-ATG-------------CTCCTTAC---CC------TA-TGA------------------CCAAATTA-----TGAT-C--C--TTT--CATTTCAGTCCATGCAAGAAGCACTCAATTACATTGGAGTTAAATATACTGATAC----------TGC
droBia1	scf7180000302428:9429476-9429633 +		TCGATGTGGTTGCCTCAGTGTATCATGGATTCGACTTAAGCCATACAACGGTAGAGAA----------AA-TTA-ACT------------ATTCTG---------ACATATACTTC------------------ATA-ACTG-----CAAT-C--C--TTA-CTATCATAGTCTATGCAAGATGCACTGGACTACATTGGAGTCACCTATAGCGAAAC----------CAC
droTak1	scf7180000415857:449035-449191 +		TCGATGTGGTGGCCTCGGTGTATCATGGACTCGACTTGAGTCATACAACGGTAGAGA-----------AC-ACTCA---------------TTATATA-TCATA------AA-CTT------------------ATAAATTA-----TAAT-C--C--AAT-CTTTTATAGTCGATGCAAGAAGCACTTGATTACATTGGAGTGGCCTACAGTGATAC----------CAC
droEug1	scf7180000409466:376319-376477 +		TCGATGTGGTGGCCTCAGTGTATCACGGATTAGACATAAGTCATACAACGGTGAAAA-----------AA-ATTAA---------------TTCTAAT-ATATA------TA-GTA------------------ATAGATAA-----TAAT-TTTT--TTC-TTTCTTTAGTCCATTGAAGCTGCGTTTACTTACATTGGAGTAAAGAACACTGATTT----------TAC
dm3	chr3L:2649156-2649298 +		TAGATGTGGTGGCCACGGTGTATCATGGAATCGACATAAGTCATACAACGGTATGGT-----------AA-ACT-ATG-------------TTCCAGTC--------------TTC------------------ATAAATTA-----TAAT-T--C--TTA--CATTTTAGTCCATGAAAGATGCACTTGATTACATTGGAGTCTCATA--------T----------AGC
droSim2	3l:2536558-2536700 +		TCGATGTGGTGGCCACGGTGTATCATGGAATCGACATCAGTCACACAACGGTATGGT-----------AA-ATT-GTG-------------TTCCACAC--------------TTC------------------ATAAATAA-----CAAT-T--C--TTA--CATTTTAGTCCATGAAAGATGCACTTGATTACATTGGAGTCTCATA--------T----------AGC
droSec2	scaffold_2:2675136-2675278 +		TCGATGTGGTGGCTACGGTGTATCATGGAATCGACATAAGTCATACAACGGTATGGT-----------AA-ACT-GTG-------------TTCCACAC--------------TTC------------------ATAAATAA-----CAAT-T--C--TTA--CATTTTAGTCCATGAAAGATGCACTTGATTACATTGGAGTCTCATA--------T----------AGC
droYak3	3L:9286697-9286848 -		TCGATGTGGTGGCCTCGGTGTATCATGGAATCGACTTAAGTCATACAACGGTACAGT-----------AA-ACT-ACG-------------TTCTATTC--------------ATC------T-----------ATAAATTA-----TAAT-G--C--TTC--CATTTTAGACCATGAAAGATGCACTGGATTACATTGGAGTCACATATAGTGATAC----------TGT
droEre2	scaffold_4784:2668624-2668771 +		TCGATGTGGTGGCCTCGGTGTATCATGGAATTGACTTAAGTCATACAACGGTACAGT-----------AA-ACT-ATG-------------TTCTACGC--------------ATC------------------ATAAATTA-----TCAT-G--C--TTACATTTTTTAGACCATGAAAGATGCACTTGATTACATTGGAGTCACATATAGTGA---------------T

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TGGACGTGGTGGCCACTGTCTACCATGCCCTGGACATAACCAAAACTTTGGTAGGTT------TTAGTAA-ATT-CTG-------------CCTGCCCT--TTGGAGA--------------------------TTCTATAT-----GAAGTTTTA--TTT-CCTGTGCAGTCCCTGGAAGATACCTTCGATTTTGTGGGCGTCGAGTCGGATGATCT----------GAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........GGCCACTGTCTACCATGCCCTGGAC....................................................................................................................................................................................................	25	1	10.00	10	0	0	8	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................GATACCTTCGATTTTGTGGGCGT............................	23	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CACTGTCTACCATGCCCTGGA.....................................................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GGCCACTGTCTACCATGCCCTG.......................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GGCCACTGTCTACCATGCCCTGGA.....................................................................................................................................................................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TACCTTCGATTTTGTGGGCGT............................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................GGAAGATACCTTCGATTTTGTGGGC..............................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GGCCACTGTCTACCATGCCCTGG......................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GATTTTGTGGGCGTCGAGTC......................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GATTTTGTGGGCGTCGAGTCGGA...................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........GGCCACTGTCTACCATGCC..........................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GTCGAGTCGGATGATCT----------GAC	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................CTTCGATTTTGTGGGCGT............................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATACCTTCGATTTTGTGGGCGT............................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CTACCATGCCCTGGACATA.................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATACCTTCGATTTTGTGGGC..............................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATACCTTCGATTTTGTGGGCGTCGA.........................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GATTTTGTGGGCGTCGAGT.......................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................TGTCTACCATGCCCTGGACATAACC..............................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ACTGTCTACCATGCCCTGGA.....................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GATTTTGTGGGCGTCGAGTCGGAT..................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GGTGGCCACTGTCTACCATGCCCTGGAC....................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CCTTCGATTTTGTGGGCGTCGAGTC......................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTAGGTT------TTAGTAA-ATT-CTG-------------CCTGCCCT--..................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATACCTTCGATTTTGTGGGCGTCGG.........................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................ATTTTGTGGGCGTCGAGTCGGATGAT...............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............CCACTGTCTACCATGCCCTGGA.....................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CCTTCGATTTTGTGGGCGTCGAGTCGG....................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................AGATACCTTCGATTTTGTGGGCGT............................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................CCCT--TTGGAGA--------------------------TTCTATAT-----GA..................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........GGCCACTGTCTACCATGC...........................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CTACCATGCCCTGGACATAACCAAAA..........................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................AAGATACCTTCGATTTTGTGGGCGT............................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GCCACTGTCTACCATGCC..........................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TTCGATTTTGTGGGCGTCGAGTCG.....................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................GATACCTTCGATTTTGTGGGC..............................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TTCGATTTTGTGGGCGTCGA.........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CACTGTCTACCATGCCCTG.......................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TTGTGGGCGTCGAGTCGGATGATC..............	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

TGGATATAGTGGCCACCGTCTATCATGGCATGGACATATCAAAGACTTTGGTAAGGC-----------CA-AAA-ATGGGAACTCAGAGAGATAGA---------GAA--------------------------ATCTATAT-----AA-GTGGTC--TTC-CATCAACAGACACTGAATGATGCTTTTGAGTTTGTGGGCGCCACATTGGATCCTAC----------AAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................ATGGACATATCAAAGACTTTGA....................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...................CTATCATGGCATGGACATATCAAA............................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................TGATGCTTTTGAGTTTGT..................................	18	1	1.00	1	1	0	0	0	0	0
...ATATAGTGGCCACCGTCTAT................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................ATGATGCTTTTGAGTTTGTGGGC..............................	23	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................CACTGAATGATGCTTTTGAGTTTGT..................................	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................GATGCTTTTGAGTTTGTGGGCGCC...........................	24	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................CTGAATGATGCTTTTGAGTTTGT..................................	23	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................GAATGATGCTTTTGAGTTTGTGGGC..............................	25	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................ACTGAATGATGCTTTTGAGTTTGTGG................................	26	1	1.00	1	0	0	0	0	0	1
.............CACCGTCTATCATGGCATGGA.....................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................ATGGCATGGACATATCAAAGACTTTGA....................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................GGGCGCCACATTGGATCCTAC----------...	21	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................GAATGATGCTTTTGAGTTTGTG.................................	22	1	1.00	1	1	0	0	0	0	0

droGri2

TGGACGTTGTTGCCACTGTCTATCATGGTCTGGATATATCCCATACTTTGGTAAGAT------TGAGAAAATAG-CCGT----------CTCCCTA---------CGA-----TTT---------------GTTTCAAATGT-----TAA---------TC-ATTATGTAGTCCCTAGATGATGCTTTCAATTTTATTGGCGCCGCACCGGTTTCAAT----------GCC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

TGGATGTGGTGGCGACTGTATATCATGGTCTGGACCTAAGTCACACATTGGTAAGCC-----------AA-CTG-TTG-------------TTGTTTAT-GCCT------GA-TGTGCCACCAATAATCTCTCTCTCTCCCGTTCTCTTCC-T--G--TTC--TGTTTTAGACCTATCAAGAAGCCTTTGAATACATAGGAGCTACACTTAGCA--------------CAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................GTATATCATGGTCTGGACCTAAGT..............................................................................................................................................................................................	24	1	19.00	19	0	0	14	4	1
...................ATATCATGGTCTGGACCTAAGT..............................................................................................................................................................................................	22	1	18.00	18	0	5	10	3	0
.....................ATCATGGTCTGGACCTAAGT..............................................................................................................................................................................................	20	1	11.00	11	0	0	4	7	0
..........................................................................................................................................................................GACCTATCAAGAAGCCTTTGAATA.....................................	24	1	3.00	3	1	1	0	1	0
..............ACTGTATATCATGGTCTGGACCTAAGT..............................................................................................................................................................................................	27	1	3.00	3	0	0	1	2	0
.............GACTGTATATCATGGTCTGGACCTA.................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0
...................ATATCATGGTCTGGACCTAAGTC.............................................................................................................................................................................................	23	1	2.00	2	0	0	1	1	0
.................GTATATCATGGTCTGGACC...................................................................................................................................................................................................	19	1	2.00	2	0	1	0	1	0
.................GTATATCATGGTCTGGACCT..................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0
................TGTATATCATGGTCTGGACCTAAGT..............................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0
...................ATATCATGGTCTGGACCT..................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0
..................TATATCATGGTCTGGACCTAAGT..............................................................................................................................................................................................	23	1	2.00	2	0	0	0	2	0
........................ATGGTCTGGACCTAAGTCACACATT......................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................ATACATAGGAGCTACACTTAGCA--------------CA.	25	1	1.00	1	0	0	1	0	0
........GTGGCGACTGTATATCATGGT..........................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
...............CTGTATATCATGGTCTGGACCTAAGT..............................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
.....GTGGTGGCGACTGTATATCAT.............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
...................ATATCATGGTCTGGACCTAAGTCA............................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................ATACATAGGAGCTACACTTAGCA--------------...	23	1	1.00	1	0	0	1	0	0
.......GGTGGCGACTGTATATCAT.............................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
..GATGTGGTGGCGACTGTATATCATGGT..........................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.....................ATCATGGTCTGGACCTAAGTCACAC.........................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
....................TATCATGGTCTGGACCTAAGT..............................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.............GACTGTATATCATGGTCTGGAC....................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.............GACTGTATATCATGGTCTGGACCTAAGT..............................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
.............GACTGTATATCATGGTCTG.......................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................ACCTATCAAGAAGCCTTT..........................................	18	1	1.00	1	0	0	0	1	0
.....................ATCATGGTCTGGACCTAAGTCACACATT......................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................AGAAGCCTTTGAATACATAGGAGC............................	24	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................AATACATAGGAGCTACACTT.....................	20	1	1.00	1	0	0	0	1	0
..............ACTGTATATCATGGTCTGGAC....................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................ATACATAGGAGCTACACTTAGCA--------------CAC	26	1	1.00	1	0	0	1	0	0
...................ATATCATGGTCTGGACCTAA................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
.......GGTGGCGACTGTATATCATGGT..........................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
.................................................................................................................................................................................................ACATAGGAGCTACACTTAGCA--------------CAC	24	1	1.00	1	0	1	0	0	0
.....GTGGTGGCGACTGTATATCATG............................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................CTTTGAATACATAGGAGC............................	18	1	1.00	1	1	0	0	0	0
....................................................................................................................................................................................................TAGGAGCTACACTTAGCA--------------...	18	1	1.00	1	0	0	0	1	0
...................ATATCATGGTCTGGACCTAAGTCACAC.........................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
.GGATGTGGTGGCGACTGTATATCATG............................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
....TGTGGTGGCGACTGTATATCATGGT..........................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.....................ATCATGGTCTGGACCTAAGTCA............................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.....GTGGTGGCGACTGTATATCATGGT..........................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................AAGAAGCCTTTGAATACATAA................................	21	4	0.25	1	0	0	0	1	0

dp5

TGGACGTGGTTGCCAGCGTGTATCACGGCATTGACCTAAGCCACACGACGGTAAGGAGATCTGGCA------GG----GAAA---------CCAAGCAC--ACAAAGA--------------------------TTAAATAATAA--TAAA-T--AATTCC-CTTTAATAGTCGCTGAGGGATGCATTAGATTATATTGGAGCTTATGT---CGATCCGGAC---TCTCAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................ATCACGGCATTGACCTAAGC..............................................................................................................................................................................................	20	1	6.00	6	0	6	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GATTATATTGGAGCTTATGT---C..................	21	1	6.00	6	0	4	0	0	0	0	2	0	0	0
..............................................................................................................................................................................................ATTATATTGGAGCTTATGT---CGATCC.............	25	1	4.00	4	0	3	1	0	0	0	0	0	0	0
................................................................................................................................................................................................TATATTGGAGCTTATGT---CGATCC.............	23	1	4.00	4	0	1	1	0	1	0	1	0	0	0
...............................................................................................................................................................................................TTATATTGGAGCTTATGT---CGATCC.............	24	1	4.00	4	0	3	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................TATTGGAGCTTATGT---CGATCC.............	21	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................ATATTGGAGCTTATGT---CGATCC.............	22	1	3.00	3	0	2	0	0	1	0	0	0	0	0
.......GGTTGCCAGCGTGTATCACGGC..........................................................................................................................................................................................................	22	1	2.00	2	0	1	0	0	1	0	0	0	0	0
.................GTGTATCACGGCATTGACCTA.................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TTGGAGCTTATGT---CGATCC.............	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................GTATCACGGCATTGACCTAAGCC.............................................................................................................................................................................................	23	1	2.00	2	0	1	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................GATTATATTGGAGCTTATGT---CG.................	22	1	2.00	2	0	1	0	0	0	0	1	0	0	0
.....................ATCACGGCATTGACCTAAGCCACACGAC......................................................................................................................................................................................	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................CGTGTATCACGGCATTGACCTAAGC..............................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............GCGTGTATCACGGCATTGACCTAAGC..............................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GCTGAGGGATGCATTAGA........................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................ATTGACCTAAGCCACACGAC......................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................ATATTGGAGCTTATGT---CGATCCGGAC---T.....	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................GAGGGATGCATTAGATTATATTGGA..............................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GATTATATTGGAGCTTATGT---CGATCCGGA..........	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................GGGATGCATTAGATTATATTGGA..............................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................GTATCACGGCATTGACCTAAGCCACACGA.......................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................ATTGGAGCTTATGT---CGATCCG............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................ATATTGGAGCTTATGT---CGA................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............GCGTGTATCACGGCATTGACCTAA................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................CACGGCATTGACCTAAGCCACACGAC......................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................GTATCACGGCATTGACCTAAG...............................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................GATGCATTAGATTATATTGG...............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....CGTGGTTGCCAGCGTGTATCACGGCATT.......................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........GTTGCCAGCGTGTATCACGGCAT........................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...................GTATCACGGCATTGACCTAAGCCA............................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
TGGACGTGGTTGCCAGCGTGT..................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TTATATTGGAGCTTATGT---CG.................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................AGATTATATTGGAGCTTATGT---CGA................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................CGTGTATCACGGCATTGAC....................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................ATTAGATTATATTGGAGCTTATGT---CG.................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TGAGGGATGCATTAGATTATATTGGA..............................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................GTGTATCACGGCATTGACCTAAGC..............................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GAGCTTATGT---CGATCCGGAC---T.....	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................TGTATCACGGCATTGACCTAAGC..............................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................ATTGGAGCTTATGT---CGATCC.............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GCTGAGGGATGCATTAGATT......................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GTCGCTGAGGGATGCATTAGA........................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GCTTATGT---CGATCCGGAC---T.....	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................GTGTATCACGGCATTGACCTAAGCCA............................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............CAGCGTGTATCACGGCATTGACCTAAGC..............................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................GATGCATTAGATTATATTGGAGCT...........................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................GTCGCTGAGGGATGCATTAGATT......................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TTATATTGGAGCTTATGT---CGATCCGGA..........	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........GTTGCCAGCGTGTATCACGGC..........................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GCTTATGT---CGATCCGGAC---TCT...	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATGCATTAGATTATATTGGA..............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....CGTGGTTGCCAGCGTGTATCACGGC..........................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................GACCTAAGCCACACGACGT....................................................................................................................................................................................	19	2	1.00	2	0	1	0	0	1	0	0	0	0	0
.....GTGGTTGCCAGCGTGTATCACGGCATT.......................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droAna3

TGGATGTGGTGGCTAGTGTGTATCATGGACTTGATTTGAGCCATACAACGGTGGGTA-----------GT-ACT-AT---------------ACA---------AAGAC----TTC---------------TCCTTAAACAG-----GAAT-T--A--ATT-CTCTTTTAGTCACTGGATGATGCATTTAACTACATAGGAGTCGTGGAC---AATTC----------GGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................GATTTGAGCCATACAACGT....................................................................................................................................................................................	19	1	5.00	5	1	0	0	0	1	3
.....................ATCATGGACTTGATTTGAGC..............................................................................................................................................................................................	20	1	5.00	5	2	0	0	0	3	0
.....................ATCATGGACTTGATTTGAGCC.............................................................................................................................................................................................	21	1	4.00	4	0	1	0	0	3	0
....................................................................................................................................................................................GATGCATTTAACTACATAGGAGTCGTG........................	27	1	4.00	4	0	0	0	0	4	0
.......................CATGGACTTGATTTGAGCC.............................................................................................................................................................................................	19	1	3.00	3	0	1	0	0	1	1
...................GTATCATGGACTTGATTTGAGC..............................................................................................................................................................................................	22	1	3.00	3	2	0	0	0	1	0
............................................................................................................................................................................CACTGGATGATGCATTTAACT......................................	21	1	3.00	3	0	2	0	0	1	0
.......................................................................................................................................................................................................GAGTCGTGGAC---AATTC----------GGA	19	1	3.00	3	1	1	0	0	1	0
.....GTGGTGGCTAGTGTGTATCATGGA..........................................................................................................................................................................................................	24	1	3.00	3	0	0	0	1	2	0
...................GTATCATGGACTTGATTTGAGCC.............................................................................................................................................................................................	23	1	2.00	2	0	1	0	0	1	0
.....GTGGTGGCTAGTGTGTATCATG............................................................................................................................................................................................................	22	1	2.00	2	1	0	0	0	1	0
....................................................................................................................................................................................GATGCATTTAACTACATAGGAGTCGT.........................	26	1	2.00	2	0	0	0	0	2	0
...............GTGTGTATCATGGACTTGATTTGAGC..............................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
..GATGTGGTGGCTAGTGTG...................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	1	1	0
...................GTATCATGGACTTGATTTGAG...............................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................TGCATTTAACTACATAGGAGTCGTGGAC---A.................	29	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................ACATAGGAGTCGTGGAC---AATTC----------...	22	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................................................GGAGTCGTGGAC---AATTC----------GG.	19	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................TAACTACATAGGAGTCGTGGAC---AATT..............	26	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................TAACTACATAGGAGTCGTG........................	19	1	1.00	1	1	0	0	0	0	0
..GATGTGGTGGCTAGTGTGTAT................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
....TGTGGTGGCTAGTGTGTATCATG............................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................ATTTAACTACATAGGAGTCGTG........................	22	1	1.00	1	0	0	0	0	1	0
...........GCTAGTGTGTATCATGGACTTG......................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.....GTGGTGGCTAGTGTGTATC...............................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..........GGCTAGTGTGTATCATGGACTT.......................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.......GGTGGCTAGTGTGTATCATGGACT........................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................ATAGGAGTCGTGGAC---AATTC----------...	20	1	1.00	1	1	0	0	0	0	0
.......GGTGGCTAGTGTGTATCATGGACTTG......................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................ATTTAACTACATAGGAGTCGTGGAC---..................	25	1	1.00	1	1	0	0	0	0	0
........................ATGGACTTGATTTGAGCCAT...........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.................GTGTATCATGGACTTGATTTGAGC..............................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................ATGCATTTAACTACATAGGAGTCGTG........................	26	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................GATGCATTTAACTACATAGGAGT............................	23	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................................TGCATTTAACTACATAGGAGTCGTGGAC---..................	28	1	1.00	1	1	0	0	0	0	0
.....GTGGTGGCTAGTGTGTATCATGGAC.........................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................GCATTTAACTACATAGGAGC............................	20	1	1.00	1	0	1	0	0	0	0
.................................ATTTGAGCCATACAACGT....................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
...................GTATCATGGACTTGATTTGAGA..............................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................GCATTTAACTACATAGGAGTCGTG........................	24	1	1.00	1	0	0	0	0	1	0
..............AGTGTGTATCATGGACTT.......................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...............GTGTGTATCATGGACTTG......................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................CATAGGAGTCGTGGAC---AATTC----------...	21	1	1.00	1	0	1	0	0	0	0
..........GGCTAGTGTGTATCATGGA..........................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................ATGCATTTAACTACATAGGAGT............................	22	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................GATGCATTTAACTACATAGGAGTC...........................	24	1	1.00	1	0	0	0	0	1	0
..................TGTATCATGGACTTGATTTGAGCC.............................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.....................ATCATGGACTTGATTTGAGCG.............................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.......................CATGGACTTGATTTGAGC..............................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................GATGATGCATTTAACTACATAGGAGT............................	26	1	1.00	1	0	0	1	0	0	0
...........................................................................................................................................................................TCACTGGATGATGCATTTAACTACAT..................................	26	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................GTCACTGGATGATGCATTTAACTAC....................................	25	1	1.00	1	1	0	0	0	0	0
..............AGTGTGTATCATGGACTTGA.....................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................TTAACTACATAGGAGTCGTGGAC---AATTC----------...	28	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................GCATTTAACTACATAGGAGT............................	20	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................CACTGGATGATGCATTTAACTACATAGGA..............................	29	1	1.00	1	1	0	0	0	0	0
..........GGCTAGTGTGTATCATGGACT........................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.................GTGTATCATGGACTTGATTTGAGCCATA..........................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................CACTGGATGATGCATTTA.........................................	18	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................................................ACTGGATGATGCATTTAACTACATAGG...............................	27	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................ACTACATAGGAGTCGTGGAC---AATTC----------...	25	1	1.00	1	1	0	0	0	0	0
................................GATTTGAGCCATACAACGTC...................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................TTAACTACATAGGAGTCGTGGAC---..................	23	1	1.00	1	0	0	0	0	1	0
.............TAGTGTGTATCATGGACTTGA.....................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
................................GATTTGAGCCATACAACGTCA..................................................................................................................................................................................	21	3	0.33	1	1	0	0	0	0	0

droBip1

TGGATGTAGTGGCTAGTGTGTATCATGGAATTGATTTGAGCCACACAATGGTGGGTA-----------G--TCT-CTT-------------ATACA--------AACAC----TTC--------------CTCCTTAAACATGAATTTGTT-T--C--TTC--TTTTTAAGACACTGGATGATGCATTTAGCTACGTAGGAGCCGAGGCTAGC---CAGGACGAGCCGTAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCGATGTGGTGGCCTCTGTGTATCATGGAATTGACTTAAGCCATACTATGGTGGGTG------CCA------GG----AAAACACTTTAAGTTATA---------GAA-----TTT---------------ACTTT-AATAA-----TAAATCTTC--TCC-CCTTTGCAGTCCCTGGAAGAAACACTCAGCTATATTGGAGGAACGGC---CGATAC----------CGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCGACGTGGTGGCCTCTGTGTATCATGGAATCGACTTGAGCCACACAACGGTAATTA-----------AA-AAGGA---------------TCTCATA-ATGGG------GC-TTC------------------ATGAGTAA-----TGAA-C--C--TTA-CTTCCACAGTCCCTGCAAGATGCACTCGACTACATTGGGGTGGT----------------------AAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCGATGTGGTGGCCTCAGTGTATCATGGACTCGACTTAAGCCATACTATGGTGGGAA-----------AA-TCA-GTGC----------TTTTCCATGA--------------TGT------------------ATAAACTA-----TAGT-T--C--TTACTTTTTTTAGTCCATGCAAGACGCGTTTGATTACATCGGAATAACGTAT---GACCC----------TAC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCGATGTGGTGGCCTCAGTGTATCATGGAATCGACTTAACCCATACTACGGTTAGAA-----------AA-GTA-ATG-------------CTCCTTAC---CC------TA-TGA------------------CCAAATTA-----TGAT-C--C--TTT--CATTTCAGTCCATGCAAGAAGCACTCAATTACATTGGAGTTAAATATACTGATAC----------TGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCGATGTGGTTGCCTCAGTGTATCATGGATTCGACTTAAGCCATACAACGGTAGAGAA----------AA-TTA-ACT------------ATTCTG---------ACATATACTTC------------------ATA-ACTG-----CAAT-C--C--TTA-CTATCATAGTCTATGCAAGATGCACTGGACTACATTGGAGTCACCTATAGCGAAAC----------CAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCGATGTGGTGGCCTCGGTGTATCATGGACTCGACTTGAGTCATACAACGGTAGAGA-----------AC-ACTCA---------------TTATATA-TCATA------AA-CTT------------------ATAAATTA-----TAAT-C--C--AAT-CTTTTATAGTCGATGCAAGAAGCACTTGATTACATTGGAGTGGCCTACAGTGATAC----------CAC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TCGATGTGGTGGCCTCAGTGTATCACGGATTAGACATAAGTCATACAACGGTGAAAA-----------AA-ATTAA---------------TTCTAAT-ATATA------TA-GTA------------------ATAGATAA-----TAAT-TTTT--TTC-TTTCTTTAGTCCATTGAAGCTGCGTTTACTTACATTGGAGTAAAGAACACTGATTT----------TAC	Size	Hit Count	Total Norm	Total
No Reads

dm3

TAGATGTGGTGGCCACGGTGTATCATGGAATCGACATAAGTCATACAACGGTATGGT-----------AA-ACT-ATG-------------TTCCAGTC--------------TTC------------------ATAAATTA-----TAAT-T--C--TTA--CATTTTAGTCCATGAAAGATGCACTTGATTACATTGGAGTCTCATA--------T----------AGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................GTATCATGGAATCGACATAAGT..............................................................................................................................................................................................	22	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
................GGTGTATCATGGAATCGAC....................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
......................TCATGGAATCGACATAAGTCA............................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CACGGTGTATCATGGAAT........................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................ATCATGGAATCGACATAAGT..............................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................GTGTATCATGGAATCGACA...................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
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...........................................................................................................................................................................TCCATGAAAGATGCACTTGATTACAT..................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................ATGGT-----------AA-ACT-ATG-------------TTCCAGT.....................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATGTGGTGGCCACGGTGTATCATG............................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................AAAGATGCACTTGATTACATTGGA..............................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................ACTTGATTACATTGGAGTCTCATA--------T----------AGC	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....GTGGTGGCCACGGTGTATCATGGA..........................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GCACTTGATTACATTGGA..............................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CATAAGTCATACAACGTC...................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TCGATGTGGTGGCCACGGTGTATCATGGAATCGACATCAGTCACACAACGGTATGGT-----------AA-ATT-GTG-------------TTCCACAC--------------TTC------------------ATAAATAA-----CAAT-T--C--TTA--CATTTTAGTCCATGAAAGATGCACTTGATTACATTGGAGTCTCATA--------T----------AGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................GTATCATGGAATCGACATCAGTCACAC.........................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GCACTTGATTACATTGGAGT............................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................GGTGTATCATGGAATCGAC....................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................AAGATGCACTTGATTACATTGGAGT............................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TATCATGGAATCGACATCAGC..............................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................ACTTGATTACATTGGAGT............................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................CATGAAAGATGCACTTGATTACATTG................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TCGATGTGGTGGCTACGGTGTATCATGGAATCGACATAAGTCATACAACGGTATGGT-----------AA-ACT-GTG-------------TTCCACAC--------------TTC------------------ATAAATAA-----CAAT-T--C--TTA--CATTTTAGTCCATGAAAGATGCACTTGATTACATTGGAGTCTCATA--------T----------AGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................GTATCATGGAATCGACATAAGT..............................................................................................................................................................................................	22	1	8.00	8	0	1	7	0
..........................................................................................................................................................................GTCCATGAAAGATGCACTT..........................................	19	1	2.00	2	0	0	2	0
.........................................................................................................................................................................................ACTTGATTACATTGGAGT............................	18	1	2.00	2	0	0	2	0
...................GTATCATGGAATCGACATAAGTC.............................................................................................................................................................................................	23	1	1.00	1	1	0	0	0
..............................................................................................................................................................................ATGAAAGATGCACTTGAT.......................................	18	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................GCACTTGATTACATTGGAGTC...........................	21	1	1.00	1	0	0	1	0
.............TACGGTGTATCATGGAATCGAC....................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................GCACTTGATTACATTGGAGT............................	20	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................CTTGATTACATTGGAGTCT..........................	19	1	1.00	1	0	0	1	0
.................................................................................................................................................................................AAAGATGCACTTGATTACATTGGA..............................	24	1	1.00	1	1	0	0	0
..................................................................................................................................................................................AAGATGCACTTGATTACATTGGAGTCT..........................	27	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................GCACTTGATTACATTGGA..............................	18	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................ATGCACTTGATTACATTGGAGTCTC.........................	25	1	1.00	1	1	0	0	0
......................................................................................................................................................................................TGCACTTGATTACATTGGAGT............................	21	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................ATGCACTTGATTACATTGGAGT............................	22	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................CTTGATTACATTGGAGTCTCATA--------T----------A..	25	1	1.00	1	0	0	1	0
............................AATCGACATAAGTCATACAAC......................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
...........GCTACGGTGTATCATGGA..........................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0
............................................................................................................................................................................................TGATTACATTGGAGTCTCATA--------T----------AGC	25	1	1.00	1	0	1	0	0
............CTACGGTGTATCATGGAATC.......................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
................................................................................................................................................................................GAAAGATGCACTTGATTACATTGGAGT............................	27	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................ACTTGATTACATTGGAGTCTCATA--------T----------AGC	28	1	1.00	1	0	1	0	0
...................GTATCATGGAATCGACATAA................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0

droYak3

TCGATGTGGTGGCCTCGGTGTATCATGGAATCGACTTAAGTCATACAACGGTACAGT-----------AA-ACT-ACG-------------TTCTATTC--------------ATC------T-----------ATAAATTA-----TAAT-G--C--TTC--CATTTTAGACCATGAAAGATGCACTGGATTACATTGGAGTCACATATAGTGATAC----------TGT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................GTATCATGGAATCGACTTAAGT..............................................................................................................................................................................................	22	1	33.00	33	0	2	1	0	0	0	30	0	0	0	0
.....................ATCATGGAATCGACTTAAGT..............................................................................................................................................................................................	20	1	11.00	11	0	0	0	0	0	0	11	0	0	0	0
................................................................................................................................................................................GAAAGATGCACTGGATTACATTGGA..............................	25	1	5.00	5	0	2	0	0	0	0	3	0	0	0	0
..............................................................................................................................................................................ATGAAAGATGCACTGGATTACATTGGA..............................	27	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
........GTGGCCTCGGTGTATCATGGAAT........................................................................................................................................................................................................	23	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
................................................................................................................................................................................GAAAGATGCACTGGATTACATTGGAGT............................	27	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
.............................................................................................................................................................................CATGAAAGATGCACTGGAT.......................................	19	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...................GTATCATGGAATCGACTTAAGTC.............................................................................................................................................................................................	23	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
....................TATCATGGAATCGACTTAAGT..............................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...................GTATCATGGAATCGACTTAA................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..................................................................................................................................................................................AAGATGCACTGGATTACATT.................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.......GGTGGCCTCGGTGTATCAT.............................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................GATGCACTGGATTACATTGGAGTCA..........................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................GGAATCGACTTAAGTCATACAAC......................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................GAAAGATGCACTGGATTA.....................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................ATTGGAGTCACATATAGTGATAC----------T..	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........GGCCTCGGTGTATCATGGAATC.......................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CTGGATTACATTGGAGTCACATATAGT..................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................AAAGATGCACTGGATTACATTGGAGTC...........................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................GATGCACTGGATTACATTGG...............................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.CGATGTGGTGGCCTCGGTGTATC...............................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................TGTATCATGGAATCGACTTAAGT..............................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................GCACTGGATTACATTGGAGT............................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................TGCACTGGATTACATTGGA..............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GCACTGGATTACATTGGAGTCACAT.......................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................CGACTTAAGTCATACAACGACC..................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........GGCCTCGGTGTATCATGGA..........................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................ATCATGGAATCGACTTAAG...............................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........GTGGCCTCGGTGTATCATGGA..........................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........GTGGCCTCGGTGTATCATGGAATC.......................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................GATGCACTGGATTACATTGGAGT............................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................GTATCATGGAATCGACTTAAGTCAT...........................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................GTATCATGGAATCGACTTA.................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.CGATGTGGTGGCCTCGGT....................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................ATCGACTTAAGTCATACAACGACC..................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................GAATCGACTTAAGTCATACAAC......................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CATTGGAGTCACATATAGTGATAC----------T..	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CTGGATTACATTGGAGTCACAT.......................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................ATTGGAGTCACATATAGTG.................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TCGATGTGGTGGCCTCGGTGTATCATGGAATTGACTTAAGTCATACAACGGTACAGT-----------AA-ACT-ATG-------------TTCTACGC--------------ATC------------------ATAAATTA-----TCAT-G--C--TTACATTTTTTAGACCATGAAAGATGCACTTGATTACATTGGAGTCACATATAGTGA---------------T	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................GTATCATGGAATTGACTTAAGT..............................................................................................................................................................................................	22	1	15.00	15	2	0	0	1	10	2	0
...................GTATCATGGAATTGACTTAAGTC.............................................................................................................................................................................................	23	1	11.00	11	2	0	0	1	7	1	0
................................................................................................................................................................................GAAAGATGCACTTGATTAC....................................	19	1	2.00	2	0	1	0	0	1	0	0
......................................................................................................................................................................................TGCACTTGATTACATTGGA..............................	19	1	2.00	2	0	1	0	0	0	1	0
.....................ATCATGGAATTGACTTAAGTC.............................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	2	0	0
................GGTGTATCATGGAATTGACTTAAGTC.............................................................................................................................................................................................	26	1	2.00	2	0	0	0	1	1	0	0
.................................................................................................................................................................................AAAGATGCACTTGATTACATTGGAGTCA..........................	28	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................TGCACTTGATTACATTGGAGTCA..........................	23	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................GATGCACTTGATTACATTGGA..............................	21	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................ATTACATTGGAGTCACATATAGTGA---------------T	26	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................ACTTGATTACATTGGAGTC...........................	19	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................ATGCACTTGATTACATTGGAGT............................	22	1	1.00	1	1	0	0	0	0	0	0
..................TGTATCATGGAATTGACTTAAGTC.............................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................GACCATGAAAGATGCACTTGATTACATT.................................	28	1	1.00	1	0	1	0	0	0	0	0
.......................CATGGAATTGACTTAAGT..............................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................GACCATGAAAGATGCACTTGATTAC....................................	25	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................CTTGATTACATTGGAGTCA..........................	19	1	1.00	1	1	0	0	0	0	0	0
.......................CATGGAATTGACTTAAGTC.............................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................GCACTTGATTACATTGGA..............................	18	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................AGATGCACTTGATTACATTGGAGTC...........................	25	1	1.00	1	0	0	0	0	1	0	0
.....................ATCATGGAATTGACTTAAGT..............................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
..........GGCCTCGGTGTATCATGGAA.........................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................GCACTTGATTACATTGGAGTCA..........................	22	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................T-G--C--TTACATTTTTTAGGA..........................................................	18	20	0.05	1	0	0	0	0	0	1	0

-9.9	-9.9	-9.9	-9.9

dvi_18389

scaffold_13049:5090196-5090259 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads