ID:

dvi_18353

 Coordinate:

scaffold_13049:4836363-4836546 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.7 -8.9 -8.9

Flybase annnotation

CDS [Dvir\GJ12975-cds]; CDS [Dvir\GJ12975-cds]; exon [dvir_GLEANR_12904:3]; exon [dvir_GLEANR_12904:2]; intron [Dvir\GJ12975-in]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACAATACCGCAAAACAAATCGCTGTGCCAGGCGCTGCTCGATGGGCATCGGTAAGGACCATGATATTCGGCTAAAATGCTGCCTAAAGTTAAATGTGCTTCTGTATTGGTAACCGCATGCACTTGTATTAGTGAGCTTTAAGGCTAGCATCGCATGCATTTGCGTGTGCCTCATCCATGTTAACTTTTAAACTTATTGTAATTGTAATTGTACTTGTTTTCTCTCCGCCTTTAGCGAGGGCTTTTATTTATATCCCGATGGCCAGGCCTACAATCCGGATCTGT
****************************************************************************************......((..........((((.........((((......)))).........))))))**************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060682
9x140_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 M047
female body
 V116
male body		 SRR060687
9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 M027
male body		 SRR060681
Argx9_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060679
140x9_testes_total
 SRR060659
Argentina_testes_total
 SRR060657
140_testes_total
 SRR060660
Argentina_ovaries_total
 V053
head
 SRR060663
160_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060678
9x140_testes_total
 SRR060668
160x9_males_carcasses_total
 M028
head
 SRR060665
9_females_carcasses_total
 SRR060670
9_testes_total
 SRR1106729
mixed whole adult body
 SRR060655
9x160_testes_total
 SRR060664
9_males_carcasses_total
 SRR060689
160x9_testes_total
 SRR060680
 9xArg_testes_total
 SRR060669
160x9_females_carcasses_total
 SRR060658
140_ovaries_total
 SRR060676
9xArg_ovaries_total
 V047
embryo
 SRR060677
Argx9_ovaries_total
 M061
embryo
 SRR060667
160_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060683
160_testes_total
 SRR1106727
larvae
.....................................................................................................................................AGCTTTAGGGCTAGCCTCGGA.................................................................................................................................. 21 3 3 90.67 272 96 1 59 29 21 2 16 13 4 6 2 4 1 0 0 1 2 0 0 4 1 2 0 1 0 0 0 2 0 2 0 0 1 1 1 0 0 0
.......................................................................................................................................CTTTAGGGCTAGCCTCGGA.................................................................................................................................. 19 3 11 74.91 824 278 4 184 96 57 33 43 18 50 16 2 2 4 0 0 2 2 9 2 1 9 1 1 1 0 0 2 1 3 0 1 0 0 0 0 1 1 0
......................................................................................................................................GCTTTAGGGCTAGCCTCGGA.................................................................................................................................. 20 3 3 47.00 141 48 0 20 11 20 14 4 1 3 2 2 0 3 0 0 2 3 2 1 0 0 1 0 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................CTTTAGGGCTAGCGTCGCA.................................................................................................................................. 19 2 1 13.00 13 0 12 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGCTTTAGGGCTAGCGTCGAA.................................................................................................................................. 21 3 2 12.50 25 5 0 4 4 0 6 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GCTTTAGGGCTAGCGTCGC................................................................................................................................... 19 2 1 11.00 11 0 10 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CTTTAGGGCTAGCGTCGC................................................................................................................................... 18 2 1 11.00 11 0 10 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTTAGGGCTAGCCTCGGA.................................................................................................................................. 18 3 20 10.25 205 123 0 0 22 0 17 14 9 0 4 0 0 1 0 1 5 0 3 0 0 0 1 0 0 0 0 0 1 2 0 0 2 0 0 0 0 0 0
......................................................................................................................................GCTTTAGGGCTAGCGTCGCA.................................................................................................................................. 20 2 1 9.00 9 0 8 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGCTTTAGGGCTAGCCTCGG................................................................................................................................... 20 3 7 6.43 45 10 2 10 5 9 0 0 3 0 1 1 0 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGCTTTAGGGCTAGCGTCGC................................................................................................................................... 20 2 1 5.00 5 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGCTTTAGGGCTAGCCTCG.................................................................................................................................... 19 2 2 3.50 7 0 0 0 0 6 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGCTTTAGGGCTAGCGTCGA................................................................................................................................... 20 3 6 3.00 18 5 0 4 5 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................ATATGTGCTTGTGTATTGGTAACC.......................................................................................................................................................................... 24 2 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GCTTTAGGGCTAGCGTCGAA.................................................................................................................................. 20 3 4 3.00 12 4 0 0 1 0 5 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGCTTTAGGGTTAGCCTCG.................................................................................................................................... 19 3 17 3.00 51 19 2 7 3 1 2 2 3 0 0 2 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 1 0 0 1 0 0
.....................................................................................................................................AGCTTTAGGGCTAGCGTCGCA.................................................................................................................................. 21 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGCTTTAGGGCTAGCATCGGA.................................................................................................................................. 21 2 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GCTTTAGGGCTAGCGTCG.................................................................................................................................... 18 2 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GCTTTAGGGCTAGCCTCGG................................................................................................................................... 19 3 20 1.70 34 8 2 4 4 7 3 0 0 0 0 0 1 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................AGTGAGCTTTAAGGCTAGC........................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTAAATGTGCTTCTGTATTGG............................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTTAGGGCTAGCGTCGCA.................................................................................................................................. 18 2 3 1.00 3 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................CTTTTATTTATATCCCGATGGCC..................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GCTTTAGGGCTAGCGTCGCAA................................................................................................................................. 21 3 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGCTTTAGGGCTAGCCTCGCA.................................................................................................................................. 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................TATTTATATCCCGATGGCCAG................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGCTTTAGGGCTAGCGTCG.................................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TAACTGCATGCACTTGTTTTAGCGAGCT................................................................................................................................................... 28 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TACTTGTTTTCTCTCCGCCTTTAG.................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................GGCCAGGCCTACAATCCGGATCT.. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TAGCACCATGAGATTCGGCTAAA................................................................................................................................................................................................................. 23 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................GGCCTACAATCCGGATCTGT 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GCTGTGCCAGGCGCTGCTCG.................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................ATATGTGCTTTTGTATTGGTAACC.......................................................................................................................................................................... 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TAGCTTTAGGGCTAGCGTCGCA.................................................................................................................................. 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GCTTTAGGGCTAGCCTCG.................................................................................................................................... 18 2 7 0.86 6 0 0 0 0 3 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GCTTTAGGGCTAGCGTCGA................................................................................................................................... 19 3 20 0.85 17 2 0 7 1 0 4 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTGCTTGTGTATTGGTA............................................................................................................................................................................. 19 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GCACCATGAGATTCAGCTAAA................................................................................................................................................................................................................. 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTGTAATTGTAATTGTACTTG.................................................................... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................CTTTAGGGCTAGCATCGGA.................................................................................................................................. 19 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGCTTTAGGGTTAGCATCGGA.................................................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GCTTTAGGGCTAGCGTAGCA.................................................................................................................................. 20 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................AGCGAGGGATCTTATTTGTAT............................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CTTTAGGGCTAGCTTCGGA.................................................................................................................................. 19 3 12 0.17 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGCTTTAGGACTAGCCTCG.................................................................................................................................... 19 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGCTTTAGGGCTAGC........................................................................................................................................ 15 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TGCACTTGTATTAGTGAA..................................................................................................................................................... 18 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TATTGGTAACCGGAT...................................................................................................................................................................... 15 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................TTTATCTAGATCCTGATGGC...................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TTAGGGCTAGCGTCGCAA................................................................................................................................. 18 3 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TGCATCAGTGAGCTTTAA............................................................................................................................................... 18 2 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ATTGTACCTGTTATCTCT............................................................ 18 2 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGCTTTAGGGCTAGCCT...................................................................................................................................... 17 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CTTTAGGGCTAGCCTCGTA.................................................................................................................................. 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CTTTAGGGCTAGCCTC..................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TGTTATGGCGTTTTGTTTAGCGACACGGTCCGCGACGAGCTACCCGTAGCCATTCCTGGTACTATAAGCCGATTTTACGACGGATTTCAATTTACACGAAGACATAACCATTGGCGTACGTGAACATAATCACTCGAAATTCCGATCGTAGCGTACGTAAACGCACACGGAGTAGGTACAATTGAAAATTTGAATAACATTAACATTAACATGAACAAAAGAGAGGCGGAAATCGCTCCCGAAAATAAATATAGGGCTACCGGTCCGGATGTTAGGCCTAGACA
****************************************************************************************************************************************......((..........((((.........((((......)))).........))))))**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR060676
9xArg_ovaries_total
 SRR060677
Argx9_ovaries_total
 M027
male body		 SRR060679
140x9_testes_total
 SRR060657
140_testes_total
 SRR060682
9x140_0-2h_embryos_total
...................................................................................................................................................GTAGCGCACGTAAACGCACAC.................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
.......GTGTTTTTTTTAGCGACACGGT............................................................................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................ACGGAGTAGGTACAATTGAAA................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................................................................................CACACGGAGTAGGTCTTATTG.................................................................................................... 21 3 3 0.67 2 0 0 0 1 1 0 0
.................................................................................................................................................................................................................CATGAACAAAGGAAAGGCGC....................................................... 20 3 9 0.11 1 1 0 0 0 0 0 0
.........CTTTTGATTGGCGACACGGT............................................................................................................................................................................................................................................................... 20 3 13 0.08 1 1 0 0 0 0 0 0
....................................................................CCTATTATACGACGTATTTC.................................................................................................................................................................................................... 20 3 15 0.07 1 0 0 0 0 0 1 0
.............................................................................................................................................CCGATCGTAGCATAAGTAG............................................................................................................................ 19 3 18 0.06 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:4836313-4836596 + dvi_18353 ACAATACCGCAAAACAAATCGCTGTGCCAGGCGCTGCTCGATGGGCATCGGTAAGGACCA------------------------------------------------------------------------------TGATATTCGGCTA-AAA--------------------------------------TGC------------------------------------------TG-CCT----AAAGTTAAATGTGCT---------------------------------------------TCTGTA-T---------------------------------------------TGGTAACCGCATGCACT---TGTATTAGT---GAGCTTTAAGGCTAGCATCGCATGCATTTGCGTGTGCCTCATCCATGTTAACTTTTAA-ACTTA-------TTGTAATTGTAATTG----------------------------------------------------------------------------------------------------------TACT---T-------GTTTTCTCTCCGCCTTTAGCGAGGGCTTTTATTTATATCCCGATGGCCAGGCCTACAATCCGGATCTGT
droMoj3 scaffold_6680:3228009-3228277 + ACAATACCCCAAAACAAATCGCTGTGTCAGGCGCTGCTCGACGGGCATCGGTAAGGAGAT-TAGG-AT--------------------------TA-----------------AGGCTAC----------------------------------------------------------------------------------------------------------------------CG-ATTAATG---CTGAGA---------------------------------------------TCAGAGAAAGTATT---------------------------------------------TGGTTAACGTTTAGATA---TGTGATAGG---GAGA------------------AACTTTTAAATATAATTTATATATGCTTAGTTTATT-CCATA-------------TACTAATTA--------------C----ATT------------------------C----------------------------TGCTT--------------------------CTCC---CCTACCCTATTT------CAACTTTAGCGAGGGCTTTTACTTATATCCAGATGGCCAGGCCTACAATCCCGATTTAT
droGri2 scaffold_15110:10093248-10093307 - ACCATACCGCAAAACAAATCGCTCTGTCAGGCGCTGCTTGATGGCCATCGGTAAGAATTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004822:3114631-3114730 + ATT---------------------------------------------------------CAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATACTCATATTCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTATAA----------------------------------------------------------------------------------------------------------TTCT---C--------AT----AATTTCTTTCAGTGAGGGCTTCTACTTGTATCCCGATGGTCAAGCCTATAATCCGGATCTTT
dp5 XR_group6:12892069-12892129 + TCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTGCAGCGAGGGCTTCTACTTGTATCCAGATGGCCAAGCCTACAATCCGGATCTGT
droPer2 scaffold_33:915751-915811 + TCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTGCAGCGAGGGCTTCTACTTGTATCCAGATGGCCAAGCCTACAATCCGGATCTGT
droAna3 scaffold_13337:7374878-7375217 - ACAATCCCACAAAACAAATCGCTATGCCAAGCCCTACTCGATGGCCATCGGTAAGAGTTGAATTT-AT--------------------------TC--------------------ATAGATTCATAGACTATTCCCATG----------A-ACTACTTTTCTTAGAAATTATTATATTAAACCTTCTTAGCAT--------------------ATTGCAGTTTCTAAGAAAGAGTACG-A-------------------------------------------------------------ATCGATAAGATTAT-------------------------------------------------------------------------------GGTTTATAATTTGCATAAGATATATTTTCAA-------------------------AATTCCACTGAAATTGTAGTTTTGA------------------TAAGAATTTCAC-AGAACCCTCAGATAAGAGC----------------------------------------------------TTTCTAAACTATTTG--------T------CCCTTTTGCAGCGAGGGCTTCTACTTGTATCCAGATGGCCAAGCCATTAATCCGGATCTAT
droBip1 scf7180000395543:38438-38802 - ACAATCCCACAAAATAAATCGCTATGCCAAGCCCTACTCGATGGTCATCGGTAAGAGTTT-ATAG-AA--------------------------TATT------------------------------------TCCATG----------A-ATTATATTTCTAAGGAATATTTATATTTATTATTATTATCGTGGACCCTGTTTGTTTGAATAATTTTTATTTCTTAGAAGAACTACC-A-------------------------------------------------------------TTCGATAAGATATA-------------------------------------------------------------------------------CGTTTAAAATTTGCATTAGATATATTTTAAAATGGCCTTTA---------------AATTCCTTGAAAATTCTA-TTTTGA------------------TAAGAATTTCCCTTGAATACCCAAATAAGAAC----------------------------------------TGCAACAAATAGTTTATCAAATATTTA--------T------ACTCTTCTTAGGGAGGGCTTCTACTTGTATCCAGATGGCCAAGCCATTAATCCGGATCTAT
droKik1 scf7180000302486:1130020-1130111 - TCT---------------------------------------------------------TAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGC-------TTGTGGCTGTAA------------------TAGGAAT-------------------------------------------------------------------------------------TC---------------------TTGATTGCAGCGAGGGCTTTTACTTGTATCCGGATGGCCAAGCCTACAATCCGGATCTGT
droFic1 scf7180000453833:607519-607748 + ACCATCCCGCAAAACAAATCGCTGTGTCAGGCGCTGCTTGATGGCCATCGGTGAGAGATA-GTAG-AT--------------------------TATTAA-----------------TAG----------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------------------------------------------ATTGGA----------------AGAATTGGTGGTCTTCACATCCACTCTTTGAATTTGCTT---------AGGATATCAACACTCC-----------------------------------------------------------------------------------------------------------------------------------------CATTTCTTGTTTATTAATA--------AATAT---------------ATTATTTTCGATTTTCAGCGAGGGCTTTTACTTGTATCCAGATGGCCAAGCCTACAATCCGGATCTGT
droEle1 scf7180000491268:264219-264506 - ACGATCCCGCAGAACAAGTCGCTGTGCCAGGCGCTGCTCGATGGCCATCGGTGAGAGAAA-GAAG-AT--------------------------TGTTATTGTCTATCTAAAAAT-----------------TAACCTTG----------G-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTA-----AGCTTAAAACACATTTGGATGTTTCTTAACC----------------------------CGTGGTTCTAATTATGTATTTTTAGAGG-------------TTTT-------------AATCGCGACTGGTTGGGAATGTTCGTTAATTCGTTTCTTGTTTACTAATA--------AAGAT---------------ATTATTTTCCATTTTCAGAGAGGGCTTCTACTTGTATCCAGATGGCCAAGCCTACAATCCGGATCTGT
droRho1 scf7180000779204:77191-77493 + ACGATCCCGCAGAACAAGTCGCTTTGCCAGGCGCTGCTCGATGGCCATCGGTAAGAGATA-ATAT-AT--------------------------TA--------------------TTAGATT-------------CACG----------ATAAC--------------------------------------TTT------------------------------------------CCGT-----------------------------------TTTTTCTCATATCTTTATTCTAATATTAATCAA----ATGGTTTATTTTTAAAAGTTAAAATTTTACACATTTCTCAGAAATAATG---------------------------------------------------------------------------------------------------------------------------------------ATTTTACCTTATATTCCCTAA------------------------GTTCGTCCA--TATTTCTTGTTTACCAACATCTTGTTTATAAT---------------ATTTTTAACCATTTTCAGTGAGGGCTTTTACTTGTATCCAGATGGCCAAGCCTACAATCCGGATCTGT
droBia1 scf7180000302428:10369043-10369098 + ACCATCCCGCAGAACAAGTCGCTGTGCCAGGCGCTGCTCGATGGCCATCGGTGAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000414445:294307-294410 - TAA---------------------------------------------------------CAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---CAACTG--------TAT------------TTCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTAATTA----------------------------------------------------------------------------------------------------------TTAT---T--------ATTATTATGAAATTTCAGTGAGGGCTTTTACTTGTATCCAGATGGCCAAGCCTACAATCCGGATCTAT
droEug1 scf7180000409524:225429-225644 - ACAATCCCACAGAATAAGTCGCTGTGCCAGGCGCTACTCGATGGCCATCGGTGAGATATA-GTACT-TCTTACGGTTTTCTTTAAAATTTAAATTTTAAA-------------------------------------ACG----------A-AAT--------------------------------------TAG------------------------------------------CC-TCT--------------------------------------------------------------------------------------------------------------------------------------GTTAGACTACACCTAGAGTTTTAT--------------------------------------------------------------------GGCTTATTA-------------------------------------------------------------------------------------------A--------------T---------------TTTTATTTAAACTTTCAGCGAGGGCTTTTATTTGTATCCGGACGGCCAAGCTTACAATCCGGATCTGT
dm3 chr3L:8419864-8420051 + ACAATCCCTCAGAACAAGTCGCTGTGCCAGGCGCTGCTCGATGGCCATCGGTGAGAGATA-GTATTA----------------------------------------------GTACTAG----------------------------------------------------------------------------------------------------------------------AA-CCT----AATGTCCT---TTAGTG--------TATTTTAAGAGTGTATTCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGATCA----------------------------------------------------------------------------------------------------------TTAT---G--------TTT------GATTTTCAGAGAGGGCTTCTACTTGTACCCAGATGGCCAAGCGTACAATCCGGATCTGT
droSim2 3l:8225872-8226059 + dsi_3265 ACAATCCCTCAGAACAAGTCGCTGTGCCAGGCGCTGCTCGATGGCCATCGGTGAGGGATA-GTAGTA----------------------------------------------GTACTAG----------------------------------------------------------------------------------------------------------------------AG-CAT----AAAGTTCT---TAAGTG--------TATTATAAGAGCGTATTCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTGATCA----------------------------------------------------------------------------------------------------------TTTT---G--------TTT------GACTTTCAGAGAGGGCTTCTACTTGTACCCAGATGGCCAAGCGTACAATCCGGATCTGT
droSec2 scaffold_0:715889-716076 + ACAATCCCTCAGAACAAGTCGCTGTGCCAGGCGCTGCTCGATGGCCATCGGTGAGGGATA-GTAGTA----------------------------------------------GTACTAG----------------------------------------------------------------------------------------------------------------------AA-CCT----TAAGTTCT---TAAGTG--------TATTATAAAAGTGTATTCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTGATCA----------------------------------------------------------------------------------------------------------TTAT---A--------TTT------GACTTTCAGAGAGGGCTTCTACTTGTACCCAGATGGCCAAGCGTACAATCCGGATCTGT
droYak3 3L:3477981-3478189 - ACAATCCCCCAGAACAAGTCGCTGTGCCAAGCGCTGCTCGATGGCCATCGGTGAGAAATA-GTAGT-T--------------------------TACCAAAAAATAT------ATACTTG----------------------------------------------------------------------------------------------------------------------CC-CCT----AAGGCTCT---TAGTTATTATATATTATTATAAAAGTGTATTCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGATCA----------------------------------------------------------------------------------------------------------TTAT---G--------TTT------GACTTCCAGAGAGGGCTTCTACTTGTACCCAGATGGCCAAGCGTACAATCCGGATCTGT
droEre2 scaffold_4784:5612561-5612779 - der_736 ACAATCCCTCAGAACAAGTCGCTGTGCCAAGCGCTGCTCGATGGCCATCGGTGAGATATT-GTAG-AT--------------------------CATTAAAGAATATC-ATATGT-----------------TGACCACG----------A-AAC--------------------------------------TGG------------------------------------------CC-CCT----AATGTCAGATGTAATTG--------TTTTATAAAAGTGTATTCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTGATAA----------------------------------------------------------------------------------------------------------TTTT---G--------TTT------GCCTTTCAGAGAGGGCTTCTACTTGTACCCAGATGGCCAAGCGTACAATCCGGATCTGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ACAATACCGCAAAACAAATCGCTGTGCCAGGCGCTGCTCGATGGGCATCGGTAAGGACCA------------------------------------------------------------------------------TGATATTCGGCTA-AAA--------------------------------------TGC------------------------------------------TG-CCT----AAAGTTAAATGTGCT---------------------------------------------TCTGTA-T---------------------------------------------TGGTAACCGCATGCACT---TGTATTAGT---GAGCTTTAAGGCTAGCATCGCATGCATTTGCGTGTGCCTCATCCATGTTAACTTTTAA-ACTTA-------TTGTAATTGTAATTG----------------------------------------------------------------------------------------------------------TACT---T-------GTTTTCTCTCCGCCTTTAGCGAGGGCTTTTATTTATATCCCGATGGCCAGGCCTACAATCCGGATCTGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................AGT---GAGCTTTAAGGCTAGC....................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................TTAAATGTGCT---------------------------------------------TCTGTA-T---------------------------------------------TGG.................................................................................................................................................................................................................................................................................................................2111.001000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTATTTATATCCCGATGGCC.....................2311.001000000000000000000000000000000001000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTATATCCCGATGGCCAG...................2111.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACT---T-------GTTTTCTCTCCGCCTTTAG..................................................2411.001000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGGCCTACAATCCGGATCT..2311.001000000000000000000000000000000001000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTACAATCCGGATCTGT2011.001000000000000000000001000000000000000000000000000000000000000000
....................GCTGTGCCAGGCGCTGCTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAATTGTAATTG----------------------------------------------------------------------------------------------------------TACT---T-------G....................................................................2120.501000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TGCACT---TGTATTAGT---GAA.................................................................................................................................................................................................................................................................................1890.111000000000000000000000000000010000000000000000000000000000000000
droMoj3
ACAATACCCCAAAACAAATCGCTGTGTCAGGCGCTGCTCGACGGGCATCGGTAAGGAGAT-TAGG-AT--------------------------TA-----------------AGGCTAC----------------------------------------------------------------------------------------------------------------------CG-ATTAATG---CTGAGA---------------------------------------------TCAGAGAAAGTATT---------------------------------------------TGGTTAACGTTTAGATA---TGTGATAGG---GAGA------------------AACTTTTAAATATAATTTATATATGCTTAGTTTATT-CCATA-------------TACTAATTA--------------C----ATT------------------------C----------------------------TGCTT--------------------------CTCC---CCTACCCTATTT------CAACTTTAGCGAGGGCTTTTACTTATATCCAGATGGCCAGGCCTACAATCCCGATTTATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................GTAAGGAGAT-TAGG-AT--------------------------TA-----------------AGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
............AACAAATCGCTGTGTCAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
ACCATACCGCAAAACAAATCGCTCTGTCAGGCGCTGCTTGATGGCCATCGGTAAGAATTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ATT---------------------------------------------------------CAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATACTCATATTCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTATAA----------------------------------------------------------------------------------------------------------TTCT---C--------AT----AATTTCTTTCAGTGAGGGCTTCTACTTGTATCCCGATGGTCAAGCCTATAATCCGGATCTTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTACTTGTATCCCGATG........................2111.00101000
dp5
TCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTGCAGCGAGGGCTTCTACTTGTATCCAGATGGCCAAGCCTACAATCCGGATCTGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTACTTGTATCCAGATGGCCA....................2411.0010010000000
droPer2
TCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTGCAGCGAGGGCTTCTACTTGTATCCAGATGGCCAAGCCTACAATCCGGATCTGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
ACAATCCCACAAAACAAATCGCTATGCCAAGCCCTACTCGATGGCCATCGGTAAGAGTTGAATTT-AT--------------------------TC--------------------ATAGATTCATAGACTATTCCCATG----------A-ACTACTTTTCTTAGAAATTATTATATTAAACCTTCTTAGCAT--------------------ATTGCAGTTTCTAAGAAAGAGTACG-A-------------------------------------------------------------ATCGATAAGATTAT-------------------------------------------------------------------------------GGTTTATAATTTGCATAAGATATATTTTCAA-------------------------AATTCCACTGAAATTGTAGTTTTGA------------------TAAGAATTTCAC-AGAACCCTCAGATAAGAGC----------------------------------------------------TTTCTAAACTATTTG--------T------CCCTTTTGCAGCGAGGGCTTCTACTTGTATCCAGATGGCCAAGCCATTAATCCGGATCTATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................AATCGCTATGCCAAGCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCCATTAATCCGGATCT..2020.501100000
......................TATGCCAAGCCCTACTCGATGGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.501100000
................AATCGCTATGCCAAGCCCTACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.501010000
droBip1
ACAATCCCACAAAATAAATCGCTATGCCAAGCCCTACTCGATGGTCATCGGTAAGAGTTT-ATAG-AA--------------------------TATT------------------------------------TCCATG----------A-ATTATATTTCTAAGGAATATTTATATTTATTATTATTATCGTGGACCCTGTTTGTTTGAATAATTTTTATTTCTTAGAAGAACTACC-A-------------------------------------------------------------TTCGATAAGATATA-------------------------------------------------------------------------------CGTTTAAAATTTGCATTAGATATATTTTAAAATGGCCTTTA---------------AATTCCTTGAAAATTCTA-TTTTGA------------------TAAGAATTTCCCTTGAATACCCAAATAAGAAC----------------------------------------TGCAACAAATAGTTTATCAAATATTTA--------T------ACTCTTCTTAGGGAGGGCTTCTACTTGTATCCAGATGGCCAAGCCATTAATCCGGATCTATSizeHit CountTotal NormTotal
No Reads
droKik1
TCT---------------------------------------------------------TAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGC-------TTGTGGCTGTAA------------------TAGGAAT-------------------------------------------------------------------------------------TC---------------------TTGATTGCAGCGAGGGCTTTTACTTGTATCCGGATGGCCAAGCCTACAATCCGGATCTGTSizeHit CountTotal NormTotal
No Reads
droFic1
ACCATCCCGCAAAACAAATCGCTGTGTCAGGCGCTGCTTGATGGCCATCGGTGAGAGATA-GTAG-AT--------------------------TATTAA-----------------TAG----------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------------------------------------------ATTGGA----------------AGAATTGGTGGTCTTCACATCCACTCTTTGAATTTGCTT---------AGGATATCAACACTCC-----------------------------------------------------------------------------------------------------------------------------------------CATTTCTTGTTTATTAATA--------AATAT---------------ATTATTTTCGATTTTCAGCGAGGGCTTTTACTTGTATCCAGATGGCCAAGCCTACAATCCGGATCTGTSizeHit CountTotal NormTotal
No Reads
droEle1
ACGATCCCGCAGAACAAGTCGCTGTGCCAGGCGCTGCTCGATGGCCATCGGTGAGAGAAA-GAAG-AT--------------------------TGTTATTGTCTATCTAAAAAT-----------------TAACCTTG----------G-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTA-----AGCTTAAAACACATTTGGATGTTTCTTAACC----------------------------CGTGGTTCTAATTATGTATTTTTAGAGG-------------TTTT-------------AATCGCGACTGGTTGGGAATGTTCGTTAATTCGTTTCTTGTTTACTAATA--------AAGAT---------------ATTATTTTCCATTTTCAGAGAGGGCTTCTACTTGTATCCAGATGGCCAAGCCTACAATCCGGATCTGTSizeHit CountTotal NormTotal
No Reads
droRho1
ACGATCCCGCAGAACAAGTCGCTTTGCCAGGCGCTGCTCGATGGCCATCGGTAAGAGATA-ATAT-AT--------------------------TA--------------------TTAGATT-------------CACG----------ATAAC--------------------------------------TTT------------------------------------------CCGT-----------------------------------TTTTTCTCATATCTTTATTCTAATATTAATCAA----ATGGTTTATTTTTAAAAGTTAAAATTTTACACATTTCTCAGAAATAATG---------------------------------------------------------------------------------------------------------------------------------------ATTTTACCTTATATTCCCTAA------------------------GTTCGTCCA--TATTTCTTGTTTACCAACATCTTGTTTATAAT---------------ATTTTTAACCATTTTCAGTGAGGGCTTTTACTTGTATCCAGATGGCCAAGCCTACAATCCGGATCTGTSizeHit CountTotal NormTotal
No Reads
droBia1
ACCATCCCGCAGAACAAGTCGCTGTGCCAGGCGCTGCTCGATGGCCATCGGTGAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TAA---------------------------------------------------------CAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---CAACTG--------TAT------------TTCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTAATTA----------------------------------------------------------------------------------------------------------TTAT---T--------ATTATTATGAAATTTCAGTGAGGGCTTTTACTTGTATCCAGATGGCCAAGCCTACAATCCGGATCTATSizeHit CountTotal NormTotal
No Reads
droEug1
ACAATCCCACAGAATAAGTCGCTGTGCCAGGCGCTACTCGATGGCCATCGGTGAGATATA-GTACT-TCTTACGGTTTTCTTTAAAATTTAAATTTTAAA-------------------------------------ACG----------A-AAT--------------------------------------TAG------------------------------------------CC-TCT--------------------------------------------------------------------------------------------------------------------------------------GTTAGACTACACCTAGAGTTTTAT--------------------------------------------------------------------GGCTTATTA-------------------------------------------------------------------------------------------A--------------T---------------TTTTATTTAAACTTTCAGCGAGGGCTTTTATTTGTATCCGGACGGCCAAGCTTACAATCCGGATCTGTSizeHit CountTotal NormTotal
No Reads
dm3
ACAATCCCTCAGAACAAGTCGCTGTGCCAGGCGCTGCTCGATGGCCATCGGTGAGAGATA-GTATTA----------------------------------------------GTACTAG----------------------------------------------------------------------------------------------------------------------AA-CCT----AATGTCCT---TTAGTG--------TATTTTAAGAGTGTATTCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGATCA----------------------------------------------------------------------------------------------------------TTAT---G--------TTT------GATTTTCAGAGAGGGCTTCTACTTGTACCCAGATGGCCAAGCGTACAATCCGGATCTGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACCCAGATGGCCAAGCGTACAA...........2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAAGCGTACAATCCGGATCTG.2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGCCAAGCGTACAA...........1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGTACCCAGATGGCCAAGCGT...............2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGTACCCAGATGGCCAAGCGTAC.............2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CGCTGCTCGATGGCCATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGCGTACAATCCGGATC...2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTACCCAGATGGCCAAGCGTACA............2512.0020000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACCCAGATGGCCAAGCGTACAATCC........2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTACCCAGATGGCCAAGCGT...............2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TCAGAACAAGTCGCTGTGCCAGGCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000
............AACAAGTCGCTGTGCCAGGCGCTGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CCTCAGAACAAGTCGCTGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT------GATTTTCAGAGAGGGCTT.........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCGTACAATCCGGATCTG.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CAGAACAAGTCGCTGTGCCAGGCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT------GATTTTCAGAGAGGGCTTCT.......................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AACAAGTCGCTGTGCCAGGCGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AATCCCTCAGAACAAGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AATCCCTCAGAACAAGTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AGGCGCTGCTCGATGGCCATCGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................AAGAGTGTATTCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGAT................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CCAGGCGCTGCTCGATGGCCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................GT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGATCA----------------------------------------------------------------------------------------------------------TTAT---G--------TTT------GATTTTC....................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTACCCAGATGGCCAAGCGTA..............2311.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GTCGCTGTGCCAGGCGCTGCTCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CGATGGCCATCGGTGAGAGATA-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTACTTGTACCCAGATGG.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGTACAATCCGGATC...1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTACCCAGATGGCCAAGC.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTACAATCCGGATCTG.1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GATGGCCATCGGTGAGAGATA-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..........................CCAGGCGCTGCTCGATGGCCATCGGTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ACAAGTCGCTGTGCCAGGCGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTACAATCCGGATCTGT1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------GATTTTCAGAGAGGGCTTCT.......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
......................TGTGCCAGGCGCTGCTCGATGGCCATCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCAGATGGCCAAGCGTAC.............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTCAGAGAGGGCTTCTAC.....................................2211.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCCAAGCGTACAATCCGGATCT..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCCAAGCGTACAATCCGGATC...2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCAGATGGCCAAGCGTACA............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCAGATGGCCAAGCGTAC.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...ATCCCTCAGAACAAGTCGCTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGGCTTCTACTTGTACCCAGATG........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........AGAACAAGTCGCTGTGCCAGGCGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGATGGCCAAGCGTACA............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCTTCTACTTGTACC..............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTACTTGTACCCAGATGGC......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATGGCCAAGCGTACAAT..........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCAGATGGCCAAGCGTACAATCCGGA.....2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AAGTCGCTGTGCCAGGCGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAAGCGTACAATCCGGATCTGT2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CTCAGAACAAGTCGCTGTGCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTACAATCCGGATCTGT2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..........AGAACAAGTCGCTGTGCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACCCAGATGGCCAAGCG................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---G--------TTT------GATTTTCAGAGAGGGC...........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
..................................TGCTCGATGGCCATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACAATCCCTCAGAACAAGTCGCTGTGCCAGGCGCTGCTCGATGGCCATCGGTGAGGGATA-GTAGTA----------------------------------------------GTACTAG----------------------------------------------------------------------------------------------------------------------AG-CAT----AAAGTTCT---TAAGTG--------TATTATAAGAGCGTATTCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTGATCA----------------------------------------------------------------------------------------------------------TTTT---G--------TTT------GACTTTCAGAGAGGGCTTCTACTTGTACCCAGATGGCCAAGCGTACAATCCGGATCTGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAAGCGTACAATCCGGATCTGT2612.00200000000101000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGCGTACAATCCGGATC...2112.00200000002000000000
droSec2
ACAATCCCTCAGAACAAGTCGCTGTGCCAGGCGCTGCTCGATGGCCATCGGTGAGGGATA-GTAGTA----------------------------------------------GTACTAG----------------------------------------------------------------------------------------------------------------------AA-CCT----TAAGTTCT---TAAGTG--------TATTATAAAAGTGTATTCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTGATCA----------------------------------------------------------------------------------------------------------TTAT---A--------TTT------GACTTTCAGAGAGGGCTTCTACTTGTACCCAGATGGCCAAGCGTACAATCCGGATCTGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................TGCTCGATGGCCATCGGTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
................................GCTGCTCGATGGCCATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
droYak3
ACAATCCCCCAGAACAAGTCGCTGTGCCAAGCGCTGCTCGATGGCCATCGGTGAGAAATA-GTAGT-T--------------------------TACCAAAAAATAT------ATACTTG----------------------------------------------------------------------------------------------------------------------CC-CCT----AAGGCTCT---TAGTTATTATATATTATTATAAAAGTGTATTCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGATCA----------------------------------------------------------------------------------------------------------TTAT---G--------TTT------GACTTCCAGAGAGGGCTTCTACTTGTACCCAGATGGCCAAGCGTACAATCCGGATCTGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCCAAGCGTACAATCC........2011.00101000000000
droEre2
ACAATCCCTCAGAACAAGTCGCTGTGCCAAGCGCTGCTCGATGGCCATCGGTGAGATATT-GTAG-AT--------------------------CATTAAAGAATATC-ATATGT-----------------TGACCACG----------A-AAC--------------------------------------TGG------------------------------------------CC-CCT----AATGTCAGATGTAATTG--------TTTTATAAAAGTGTATTCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTGATAA----------------------------------------------------------------------------------------------------------TTTT---G--------TTT------GCCTTTCAGAGAGGGCTTCTACTTGTACCCAGATGGCCAAGCGTACAATCCGGATCTGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................TGTGCCAAGCGCTGCTCGATGGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000

Generated: 05/17/2015 at 03:57 AM