dvi_18349

CDS [Dvir\GJ12974-cds]; exon [dvir_GLEANR_12903:3]; CDS [Dvir\GJ12974-cds]; exon [dvir_GLEANR_12903:2]; intron [Dvir\GJ12974-in]

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Species	Coordinate	ID	Alignment
droVir3	scaffold_13049:4823232-4823612 +	dvi_18349	AGCTGCTCAAGGATCATCAGAAGAGCAGCAGCTGGGGCACAGAGGCTCTGGTGAGTATCGA-----TGT-----------GTATAAGAGTGGG-GAAATTTGTGACGTGACAGTCTTATGCGT---------------A-AT-C--------------------------------GAT-------------------------------------AATTG---TGTATATATATATTGTG---------AATTGTGTATGCAACACTGTG------------------------------------------------------------------------------------------CGCCTAACGGCAGTTTTCCCGAAATGCTG-CCAGTAATGGCGAC------------CG----CCGCAGCCATA-GTTAATT-TT-------ATGCTTTTCAGCAACGTCTCGTGTCGTGTCTTGAATATTTTTTTATTTTATTTTGTA--------------------------------------------------------------CATT-GCATAC------------------------------AATTACTATGGCAGAATTTTGCACTCCAAAAG------------------------------ACGTGTGCCAGTTACCGTATAATCGCAGCTGCGA------------------TATCAACACGTTGACCGTGGACAGCAT
droMoj3	scaffold_6680:3214230-3214616 +		GTGAGT--------------------------------------------------GTTAAAAATTTGT-----------GTTTAAGTGTGTGAGTGACTTGTTCTGTGTCGATTTTATGTGT---------------A-GC-C--------------------------------TCTCAAAACTTCCACATGAGAGAACTTTGCGAAAGCTCTCAATAG---TGTCTCTTT-------A---------AATTGCATATGCAACTCTGTG------------------------------------------------------------------------------------------CATATAACGGCAGTTTTCCCAAGTAACTT-CCGTTGATGGCCAC------------CA----TCGAAGCCATA-ATTCATT-TT-------TCGCTATCCAACAACGTCTCGTGTCGTATTTGGAA--TTATTTTATTTAATTTTGTACGTGTTTTTTG-------------TTT-----A-----------------------TCGTGTCAATTCAATAC------------------------------AATTAAAATGGCAGACTTTTGCACACCGAAAG------------------------------AAATTTGTCAATTGCCGATGAATCGTATGCCCGA------------------TATTCACACTCTTTCCGTGGACAGCAT
droGri2	scaffold_15110:10106178-10106602 -		AACTGCTAAAGGATCATCAAAAGAGCAGCAGCTGGGGCAACGAAGCATTGGTGAGTACTAT-----TTGGATAATATT----TTAA---------GA------------------------GT---------------GGGC-C--------------------------------ACTCTA------------------CTTTGT---TGCTCAAAG-AGCGAAGTAG--TT-------T---------TATAGTGAATGCAACACTGTATTTAGT-A---------------------------------------------------------------------------AAAAGTTCGTCTAACGGCAGTTTTCCCAA-AAGCTT-TAGCTAATTGCAAACGAAACTC-AAACT----TCGTCGCCATT-ACTAATT-GA-------ACACTTTTCAAGAGCGCATCGTGTTTTTTTTTGTTT----------------------GTGATTTTTGTCTTTGTCTTGTGTAAATTGTAAAT-----------------------TGATAAA-AAACCA------------------------------AAAAAAAATGGCGGAATTTTGCTCACCGAAAGGCAGATGCCCATTGGCAGTCAGACGCTCGAACAAGACCAAA------------------------------GAGCCGACCTTTCGGAACACGCTGACCGTGGGAAACCT
droWil2	scf2_1100000004822:3101318-3101374 +		AGCTCCTTAAAGATCATCAAAAGAGTAGCAGTTGGGGTCACGAAGCTTTGGTGAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	XR_group6:12878390-12878700 +		AGCTGCTTAAAGATCATCAGAAGAGCAACAGCTGGGGCCACGAAGCTTTGGTGAGTACCGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--ACCGAATGCAACTCTGCGT-TATT-T---------------------------------------------------------------------------GACATTTCGTGCAACGGGACTACTTCGAAAAAGTTT-CCGAATGC---TATT-----------GC----GCGCCGCCAT-TG-CCATTTTATTAGCGCG---------------------------------------------------------------------------------TT-----C-----------------------TTGCGTTTCA-TTGTCCAAGTGTAATTGTCATTAAATTAAATTGTGGAAAAAAAATGGAGGAATGCCGCACACCGACGC------------------------------ACAAAACCAAATTCAACTTTAATCTCACTCCCACGATG---------AGG---TGGAACCACCTGAATGTGAACA-CAT
droPer2	scaffold_33:902374-902684 +		AGCTGCTTAAAGATCATCAGAAGAGCAACAGCTGGGGCCACGAAGCTTTGGTGAGTACCGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--ACCGAATGCAACTCTGCGT-TATT-T---------------------------------------------------------------------------GACATTTCGTGCAACGGGACTACTTCGAAAAAGTTT-CCGAATGC---TATT-----------GC----GCGCCGCCAT-TG-CCATTTTATTACCGCG---------------------------------------------------------------------------------TT-----C-----------------------TTGCGTTTCA-TTGTCCAAGTGTAATTGTCATTAAATTAAATTGTGGAAAAAAAATGGAGGAATGCCGCACACCGACGC------------------------------ACAAAACCAAATTCAACTTTAATCTCACTCCCACGATG---------AGG---TGGAACCACCTGAATGTGAACA-CAT
droAna3	scaffold_13337:7388266-7388709 -		AGCTTCTCAAGGATCACCAGAAGAGCAACAGTTGGGGCCACGAGGCGTTGGTAAGTTGTTG-----GGAGATAATAAT----TTAA---------AT------------------------AAAAATAAAATGGGTGTG-GTCCTAGTAAAAATAATCGTAAAAACTAGTAGAGTTACACA-GGCTTCCT-----AAAGACTTTGAGATAGTTTGTAAAAG---TTTACTGT------------------G--ATGTGA-------------------------------------------------------------------------------------CCCATCTCTGAGTTCTACGGATAACGGCATTGGTGCGAAAAAGCTTCGTGTGCTTCGGTAAGGCG-GTC-ATC-TTTTATGGCCGCCATTTG-TCAGCG--------TGAGTTTGCCTAGAACGCATCGC------------------------------------------------------------TT-----TAATTTTTCCAAATCGAATAATAATTGTGCCA------------------------------------------TAAAATGGAGGAGTCCCGTACACCAACCA------------------------------ATAAATCCAACTTTATGTTCAACCGAACGCCCACTTTGAAGGAACGGCGC---TGGAATACTCTGAAAGTGAACACCAC
droBip1	scf7180000395543:51917-51997 -		AGCTTCTGAAGGACCATCAAAAGAGCAACAGTTGGGGTCATGAGGCATTGGTAAGTTTTGG-----GATGATAATAAT----TAGA---------AA------------------------AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302486:1152001-1152087 -		AGCTGCTCAAGGATCACCAGAAGAGCAATAGCTGGGGCCACGAGGCGCTGGTGAGTAGCAA-----TG--------ACTTTTCTAAAAGAGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTT
droFic1	scf7180000453833:593770-593832 +		ACCTGCTTAAGGATCACCAGAAGAGCAACAGTTGGGGTCACGAAGCACTGGTGAGTACTCG-------------------------------------------------------------------------------------------------------------------------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491268:279952-280008 -		AGCTGCTCAAGGATCACCAGAAGAGCAATAGCTGGGGTCACGAGGCACTGGTGAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000779204:61546-61602 +		AGCTGCTCAAGGATCACCAGAAGAGCAACAGCTGGGGTCACGAGGCACTGGTGAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302428:10354312-10354367 +		AGTTGCTCAAGGATCACCAGAAGAGCAACAGCTGGGGTCACGAGGCACTGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000414445:310069-310125 -		AGCTGCTCAAGGATCACCAGAAGAGCAACAGCTGGGGTCACGAGGCGCTGGTGAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409524:237622-237679 -		AGCTGCTTAAGGATCACCAGAAGAGTAACAGCTGGGGTCACGAGGCACTGGTGAGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr3L:8405860-8406275 +		AGCTGCTCAAGGATCACCAAAAGAGCAACAGTTGGGGTCACGAGGCTCTGGTGAGTAAACA-------------------------------------------------------------------------------------------------------------------------GTTCTTTC-----ATATTC---------------------TAACTAG--TA-------TTAATACATAT-----------------ATATTATGTGGAGAAAAATAGTACGTAGTAGAATATGAATAGCGATGTGTACGATGATGAGCATATGTATGCTTTTCCCATCTCTGATCGTTTCGGTTAACGGTGTCTGTTCGAAAAAGCTT-GTGCATGTAAGCATTACATGTC-CAA-TTCGATGACCGCCATTTG-CCAGCT--------TGAATTCGCAAAGAACGCATCAT------------------------------------------------------------TT-----T-----------------------CTGTGTCACA-GTATCT------------------------------AAAAAAAATGGAGAATTCTCGCACGCCCACGA------------------------------ACAAGACCAAAATTACGCTTAATCGCACGCCAACGCTAAAGGAGCGCAGA---TGGAACACCCTGAAGGTGAACACCTC
droSim2	3l:8211829-8212239 +		AGCTGCTCAAGGACCACCAGAAGAGCAACAGTTGGGGTCACGAGGCTCTGGTGAGTACACA-------------------------------------------------------------------------------------------------------------------------GTTCTTCC-----ATATTC---------------------TAACTAG--TA-------TTAAA--ATAT-----------------ATATTAAGC-GAAAAAAATAGTATGAAGTAGAATATGAATAGCGATATGTACGATGATGATCATATGTATGCTTTTCCCATCTCTG----TTTCGGTTAACGGTGTCTATTCGAAAAAGCTC-GTGCATGTAGGCATTACATGTCTCTA-TTCGATGTCCGCCATTTG-CCAGCT--------TGAATTCGCAAAGAACGCATCAT------------------------------------------------------------TT-----T-----------------------CTGTGTCACA-GTATCTA-----------------------------AAAAAAAATGGAGAATTGTCGCACGCCCACGA------------------------------ACAAGACCAAAATTACGTTTAATCGCACGCCAACGTTAAAGGAGCGCAGA---TGGAACACCCTGAAGGTGAACACCTC
droSec2	scaffold_0:701902-702302 +		AGCTGCTAAAGGATCACCAGAAGAGCAACAGTTGGGGTCACGAGGCTCTGGTGAGTACGCA-------------------------------------------------------------------------------------------------------------------------TT-------------------------------------------------------------------ATATTAAGTGACGCAGTATATTAAGT-GAAAAAAATAGTATGTAGTAGAATATGAATAGCGATATGTACCATGATGAGCATATGTATGCTTTTCCCATCTCTGATCGTTTCGGTTAACGGGATCTCTTCGAAAAAGCTC-TTGCATGTAGGCATTACATGTCTCAA-TTCGATGTCCGCCATTTG-CCAGCT--------TGAATTCGCAAAGAACGCATTAT------------------------------------------------------------TT-----T-----------------------CTGTGTCACA-GTATCT------------------------------AAAAAAAATGGAGAATTGTCGCACGCCCACGA------------------------------ACAAGACCAAAATTACGTTTAATCGCACGCCAACATTAAAGGAGCGCAGA---TGGAACACCCTGAAGGTGAACACCTC
droYak3	3L:3492586-3492646 -		AGCTGCTCAAGGATCACCAGAAGAGCAACAGTTGGGGTCACGAGGCTCTGGTGAGTACTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4784:5626745-5626803 -		AGCTGCTCAAGGATCACCAGAAGAGCAACAGTTGGGGCCACGAGGCCCTGGTGAGTACC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

AGCTGCTCAAGGATCATCAGAAGAGCAGCAGCTGGGGCACAGAGGCTCTGGTGAGTATCGA-----TGT-----------GTATAAGAGTGGG-GAAATTTGTGACGTGACAGTCTTATGCGT---------------A-AT-C--------------------------------GAT-------------------------------------AATTG---TGTATATATATATTGTG---------AATTGTGTATGCAACACTGTG------------------------------------------------------------------------------------------CGCCTAACGGCAGTTTTCCCGAAATGCTG-CCAGTAATGGCGAC------------CG----CCGCAGCCATA-GTTAATT-TT-------ATGCTTTTCAGCAACGTCTCGTGTCGTGTCTTGAATATTTTTTTATTTTATTTTGTA--------------------------------------------------------------CATT-GCATAC------------------------------AATTACTATGGCAGAATTTTGCACTCCAAAAG------------------------------ACGTGTGCCAGTTACCGTATAATCGCAGCTGCGA------------------TATCAACACGTTGACCGTGGACAGCAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACACGTTGACCGTGGACAGCA.	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTATTTTGTA--------------------------------------------------------------CATT-GCAT.............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CAAGGATCATCAGAAGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC------------------------------AATTACTATGGCAGAATTTTGCA......................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTCTCGTGTCGTGTCT..............................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTA--------------------------------------------------------------CATT-GCATAC------------------------------AATTACTATGGCA................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGTCTTGAATATTTTTG..................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCTCGTGTCGTGTCTTGA...........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGAATTTTGCACTCCAAAAG------------------------------...............................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTCGTGTCGTGTCTTGAAT.........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATT-TT-------ATGCTTTTCAGCAAC..............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTTGTA--------------------------------------------------------------CATT-GCATAC------------------------------A............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTTACCGTATAATCGCAGCTGCGA------------------T..........................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-GCATAC------------------------------AATTACTATGGCAGAAT............................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCGTATAATCGCAGC..................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCTGCGA------------------TATCAACAC..................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGCGA------------------TATCAACACGTTGACCGT.........	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1

droMoj3

GTGAGT--------------------------------------------------GTTAAAAATTTGT-----------GTTTAAGTGTGTGAGTGACTTGTTCTGTGTCGATTTTATGTGT---------------A-GC-C--------------------------------TCTCAAAACTTCCACATGAGAGAACTTTGCGAAAGCTCTCAATAG---TGTCTCTTT-------A---------AATTGCATATGCAACTCTGTG------------------------------------------------------------------------------------------CATATAACGGCAGTTTTCCCAAGTAACTT-CCGTTGATGGCCAC------------CA----TCGAAGCCATA-ATTCATT-TT-------TCGCTATCCAACAACGTCTCGTGTCGTATTTGGAA--TTATTTTATTTAATTTTGTACGTGTTTTTTG-------------TTT-----A-----------------------TCGTGTCAATTCAATAC------------------------------AATTAAAATGGCAGACTTTTGCACACCGAAAG------------------------------AAATTTGTCAATTGCCGATGAATCGTATGCCCGA------------------TATTCACACTCTTTCCGTGGACAGCAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACTCTTTCCGTGGACAGCA.	22	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAACAACGTCTCGTGTCGTATTT..............................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0

droGri2

AACTGCTAAAGGATCATCAAAAGAGCAGCAGCTGGGGCAACGAAGCATTGGTGAGTACTAT-----TTGGATAATATT----TTAA---------GA------------------------GT---------------GGGC-C--------------------------------ACTCTA------------------CTTTGT---TGCTCAAAG-AGCGAAGTAG--TT-------T---------TATAGTGAATGCAACACTGTATTTAGT-A---------------------------------------------------------------------------AAAAGTTCGTCTAACGGCAGTTTTCCCAA-AAGCTT-TAGCTAATTGCAAACGAAACTC-AAACT----TCGTCGCCATT-ACTAATT-GA-------ACACTTTTCAAGAGCGCATCGTGTTTTTTTTTGTTT----------------------GTGATTTTTGTCTTTGTCTTGTGTAAATTGTAAAT-----------------------TGATAAA-AAACCA------------------------------AAAAAAAATGGCGGAATTTTGCTCACCGAAAGGCAGATGCCCATTGGCAGTCAGACGCTCGAACAAGACCAAA------------------------------GAGCCGACCTTTCGGAACACGCTGACCGTGGGAAACCT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

AGCTCCTTAAAGATCATCAAAAGAGTAGCAGTTGGGGTCACGAAGCTTTGGTGAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

dp5

AGCTGCTTAAAGATCATCAGAAGAGCAACAGCTGGGGCCACGAAGCTTTGGTGAGTACCGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--ACCGAATGCAACTCTGCGT-TATT-T---------------------------------------------------------------------------GACATTTCGTGCAACGGGACTACTTCGAAAAAGTTT-CCGAATGC---TATT-----------GC----GCGCCGCCAT-TG-CCATTTTATTAGCGCG---------------------------------------------------------------------------------TT-----C-----------------------TTGCGTTTCA-TTGTCCAAGTGTAATTGTCATTAAATTAAATTGTGGAAAAAAAATGGAGGAATGCCGCACACCGACGC------------------------------ACAAAACCAAATTCAACTTTAATCTCACTCCCACGATG---------AGG---TGGAACCACCTGAATGTGAACA-CAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAAAAAATGGAGG...............................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAGTGTAATTGTCATTAAA........................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCTCACTCCCACGATG---------AGG---TGGAA.....................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAATTCAACTTTAATCTCACTCCCAC.............................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGGAATGCCGCACACCGACGC------------------------------...............................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGGAATGCCGCACACCGACGC------------------------------ACAAA..........................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGAATGCCGCACACCG.................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAATGCCGCACACCGACG..............................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCACACCGACGC------------------------------ACA............................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGCTGCTTAAAGATCATCAGAAGAGCAACAGCTGGGGCCACGAAGCTTTGGTGAGTACCGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--ACCGAATGCAACTCTGCGT-TATT-T---------------------------------------------------------------------------GACATTTCGTGCAACGGGACTACTTCGAAAAAGTTT-CCGAATGC---TATT-----------GC----GCGCCGCCAT-TG-CCATTTTATTACCGCG---------------------------------------------------------------------------------TT-----C-----------------------TTGCGTTTCA-TTGTCCAAGTGTAATTGTCATTAAATTAAATTGTGGAAAAAAAATGGAGGAATGCCGCACACCGACGC------------------------------ACAAAACCAAATTCAACTTTAATCTCACTCCCACGATG---------AGG---TGGAACCACCTGAATGTGAACA-CAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

AGCTTCTCAAGGATCACCAGAAGAGCAACAGTTGGGGCCACGAGGCGTTGGTAAGTTGTTG-----GGAGATAATAAT----TTAA---------AT------------------------AAAAATAAAATGGGTGTG-GTCCTAGTAAAAATAATCGTAAAAACTAGTAGAGTTACACA-GGCTTCCT-----AAAGACTTTGAGATAGTTTGTAAAAG---TTTACTGT------------------G--ATGTGA-------------------------------------------------------------------------------------CCCATCTCTGAGTTCTACGGATAACGGCATTGGTGCGAAAAAGCTTCGTGTGCTTCGGTAAGGCG-GTC-ATC-TTTTATGGCCGCCATTTG-TCAGCG--------TGAGTTTGCCTAGAACGCATCGC------------------------------------------------------------TT-----TAATTTTTCCAAATCGAATAATAATTGTGCCA------------------------------------------TAAAATGGAGGAGTCCCGTACACCAACCA------------------------------ATAAATCCAACTTTATGTTCAACCGAACGCCCACTTTGAAGGAACGGCGC---TGGAATACTCTGAAAGTGAACACCAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAACTTTATGTTCAACCGAACGCC................................................	26	1	2.00	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCGAATAATAATTGTGCCA------------------------------------------TA........................................................................................................................................	25	1	2.00	2	1	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGTACACCAACCA------------------------------ATAAATCCAACT...................................................................	28	1	1.00	1	1	0	0	0	0	0
.....CTCAAGGATCACCAGAAGAGCAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTGAAGGAACGGCGC---TGGA......................	22	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCCA------------------------------------------TAAAATGGAGGAGTCCC.........................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
............................CAGTTGGGGCCACGAGGCGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGGAACGGCGC---TGGA......................	19	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCA------------------------------ATAAATCCAACTTTATGTTCAACC.......................................................	29	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCG--------TGAGTTTGCCTAGAACGC............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0

droBip1

AGCTTCTGAAGGACCATCAAAAGAGCAACAGTTGGGGTCATGAGGCATTGGTAAGTTTTGG-----GATGATAATAAT----TAGA---------AA------------------------AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGCTGCTCAAGGATCACCAGAAGAGCAATAGCTGGGGCCACGAGGCGCTGGTGAGTAGCAA-----TG--------ACTTTTCTAAAAGAGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACCTGCTTAAGGATCACCAGAAGAGCAACAGTTGGGGTCACGAAGCACTGGTGAGTACTCG-------------------------------------------------------------------------------------------------------------------------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGCTGCTCAAGGATCACCAGAAGAGCAATAGCTGGGGTCACGAGGCACTGGTGAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGCTGCTCAAGGATCACCAGAAGAGCAACAGCTGGGGTCACGAGGCACTGGTGAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGTTGCTCAAGGATCACCAGAAGAGCAACAGCTGGGGTCACGAGGCACTGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGCTGCTCAAGGATCACCAGAAGAGCAACAGCTGGGGTCACGAGGCGCTGGTGAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGCTGCTTAAGGATCACCAGAAGAGTAACAGCTGGGGTCACGAGGCACTGGTGAGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

AGCTGCTCAAGGATCACCAAAAGAGCAACAGTTGGGGTCACGAGGCTCTGGTGAGTAAACA-------------------------------------------------------------------------------------------------------------------------GTTCTTTC-----ATATTC---------------------TAACTAG--TA-------TTAATACATAT-----------------ATATTATGTGGAGAAAAATAGTACGTAGTAGAATATGAATAGCGATGTGTACGATGATGAGCATATGTATGCTTTTCCCATCTCTGATCGTTTCGGTTAACGGTGTCTGTTCGAAAAAGCTT-GTGCATGTAAGCATTACATGTC-CAA-TTCGATGACCGCCATTTG-CCAGCT--------TGAATTCGCAAAGAACGCATCAT------------------------------------------------------------TT-----T-----------------------CTGTGTCACA-GTATCT------------------------------AAAAAAAATGGAGAATTCTCGCACGCCCACGA------------------------------ACAAGACCAAAATTACGCTTAATCGCACGCCAACGCTAAAGGAGCGCAGA---TGGAACACCCTGAAGGTGAACACCTC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCACGCCAACGCTAAAGGAGCGC................................	27	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	8	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCT--------TGAATTCGCAAAGAACGCATC.........................................................................................................................................................................................................................................................................................	25	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCTAAAGGAGCGCAGA---TGGAAC....................	25	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---TGGAACACCCTGAAGGTGAA......	22	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAACGCATCAT------------------------------------------------------------TT-----T-----------------------CTGTGTC.....................................................................................................................................................................................	24	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAACGCTAAAGGAGCGCA...............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AGAGCAACAGTTGGGGTCACGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAATGGAGAATTCTCGCAAA....................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GCTCAAGGATCACCAAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droSim2

AGCTGCTCAAGGACCACCAGAAGAGCAACAGTTGGGGTCACGAGGCTCTGGTGAGTACACA-------------------------------------------------------------------------------------------------------------------------GTTCTTCC-----ATATTC---------------------TAACTAG--TA-------TTAAA--ATAT-----------------ATATTAAGC-GAAAAAAATAGTATGAAGTAGAATATGAATAGCGATATGTACGATGATGATCATATGTATGCTTTTCCCATCTCTG----TTTCGGTTAACGGTGTCTATTCGAAAAAGCTC-GTGCATGTAGGCATTACATGTCTCTA-TTCGATGTCCGCCATTTG-CCAGCT--------TGAATTCGCAAAGAACGCATCAT------------------------------------------------------------TT-----T-----------------------CTGTGTCACA-GTATCTA-----------------------------AAAAAAAATGGAGAATTGTCGCACGCCCACGA------------------------------ACAAGACCAAAATTACGTTTAATCGCACGCCAACGTTAAAGGAGCGCAGA---TGGAACACCCTGAAGGTGAACACCTC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT--------TGAATTCGCAAAGAA...............................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................AGGCTCTGGTGAGTACACA-------------------------------------------------------------------------------------------------------------------------GT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------------------------------------------------------------TT-----T-----------------------CTGTGTCACA-GTA..............................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGCGCAGA---TGGAACACCCTGA.............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAGCGCAGA---TGGAACAC..................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGGAGCGCAGA---TGGAA.....................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATGGAGAATTGTCGCACGC...................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATCGCACGCCAACGTTAAAGGA....................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................GTGTCTATTCGAAAAAGCTC-GT........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAGAATTGTCGC.......................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCGCAGA---TGGAACA...................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA---TGGAACACCCTGAAGGTG........	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAATTGTCGCACGCC..................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG-CCAGCT--------TGAATTCAA.....................................................................................................................................................................................................................................................................................................	19	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AGCTGCTAAAGGATCACCAGAAGAGCAACAGTTGGGGTCACGAGGCTCTGGTGAGTACGCA-------------------------------------------------------------------------------------------------------------------------TT-------------------------------------------------------------------ATATTAAGTGACGCAGTATATTAAGT-GAAAAAAATAGTATGTAGTAGAATATGAATAGCGATATGTACCATGATGAGCATATGTATGCTTTTCCCATCTCTGATCGTTTCGGTTAACGGGATCTCTTCGAAAAAGCTC-TTGCATGTAGGCATTACATGTCTCAA-TTCGATGTCCGCCATTTG-CCAGCT--------TGAATTCGCAAAGAACGCATTAT------------------------------------------------------------TT-----T-----------------------CTGTGTCACA-GTATCT------------------------------AAAAAAAATGGAGAATTGTCGCACGCCCACGA------------------------------ACAAGACCAAAATTACGTTTAATCGCACGCCAACATTAAAGGAGCGCAGA---TGGAACACCCTGAAGGTGAACACCTC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................AGAGCAACAGTTGGGGTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAATTGTCGCACGCCCACGA------------------------------...............................................................................	23	1	1.00	1	1	0	0	0

droYak3

AGCTGCTCAAGGATCACCAGAAGAGCAACAGTTGGGGTCACGAGGCTCTGGTGAGTACTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

AGCTGCTCAAGGATCACCAGAAGAGCAACAGTTGGGGCCACGAGGCCCTGGTGAGTACC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................AGAAGAGCAACAGTTGGGGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0

TCGACGAGTTCCTAGTAGTCTTCTCGTCGTCGACCCCGTGTCTCCGAGACCACTCATAGCTACACATATTCTCACCCCTTTAAACACTGCACTGTCAGAATACGCATTAGCTATTAACACATATATATATAACACTTAACACATACGTTGTGACACGCGGATTGCCGTCAAAAGGGCTTTACGACGGTCATTACCGCTGGCGGCGTCGGTATCAATTAAAATACGAAAAGTCGTTGCAGAGCACAGCACAGAACTTATAAAAAAATAAAATAAAACATGTAACGTATGTTAATGATACCGTCTTAAAACGTGAGGTTTTCTGCACACGGTCAATGGCATATTAGCGTCGACGCTATAGTTGTGCAACTGGCACCTGTCGTA *********************************************************************************************.......((((.((((...(((((...........)))))...)))).))))****************************************************************************************************************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	V053 head	V047 embryo	SRR060686 Argx9_0-2h_embryos_total	V116 male body	M027 male body	M028 head	SRR060662 9x160_0-2h_embryos_total	M061 embryo	SRR060682 9x140_0-2h_embryos_total	SRR1106729 mixed whole adult body	SRR060684 140x9_0-2h_embryos_total	SRR060689 160x9_testes_total	SRR060675 140x9_ovaries_total	GSM1528803 follicle cells	SRR060663 160_0-2h_embryos_total
.................................................................................................................................................................................................CCGCTGGCGGGGTCAGTTT.........................................................................................................................................................................	19	3	13	1.69	22	2	0	0	1	2	6	4	3	0	2	0	1	1	0	0	0
...............................................................................TTAATCACTGCACTGTCATCAT........................................................................................................................................................................................................................................................................................	22	3	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................TTTTAACACTGGACTGTCATAAT........................................................................................................................................................................................................................................................................................	23	3	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..GATGAGTTCCTGGTATTCTTC......................................................................................................................................................................................................................................................................................................................................................................	21	3	9	0.78	7	4	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0
..GATGAGTTCCTGGTATTCTT.......................................................................................................................................................................................................................................................................................................................................................................	20	3	10	0.70	7	4	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0
...ATGAGTTCCTGGTATTCTTC......................................................................................................................................................................................................................................................................................................................................................................	20	3	17	0.65	11	7	0	1	0	2	0	0	0	1	0	0	0	0	0	0	0
..GATGAGTTCCTGGTATTCT........................................................................................................................................................................................................................................................................................................................................................................	19	3	17	0.59	10	5	1	2	0	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................CGCTGGCGGGGTCAGTTTCA.......................................................................................................................................................................	20	3	5	0.40	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CCGCTGGCGGGGTCAGT...........................................................................................................................................................................	17	2	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CCGCTGGCGGGGTCAGTTTCA.......................................................................................................................................................................	21	3	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....GAGTTCCTGGTATTCTTC......................................................................................................................................................................................................................................................................................................................................................................	18	2	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TAGTGATACCGGCTGAAA..........................................................................	18	3	20	0.15	3	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................CCCGCTGGCGGGGTCAGT...........................................................................................................................................................................	18	3	20	0.15	3	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................TCCGCTGGCGGGGTCAGTA..........................................................................................................................................................................	19	3	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................CGCTGGCGGCGTCAGTTTGA.......................................................................................................................................................................	20	3	13	0.08	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TGATACCGGGTTAAAACGTT.....................................................................	20	3	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TTAATGATACCGTATTAGCA.........................................................................	20	3	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................AAAATAAACCTTGTAACGT................................................................................................	19	2	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.................................................................................................................................................................................................CCGCTGGCGGGGTCAGTGT.........................................................................................................................................................................	19	3	18	0.06	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GCGGCGGCGGTATCGATTGA..................................................................................................................................................................	20	3	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................CGCTGGCGGGGTCAGTTTC........................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................TATTAAAAAATAAAATAAAACG........................................................................................................	22	2	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

dvi_18349

scaffold_13049:4823282-4823562 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads