ID:

dvi_18294

 Coordinate:

scaffold_13049:4338542-4338727 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ12956-cds]; CDS [Dvir\GJ12956-cds]; exon [dvir_GLEANR_12888:4]; exon [dvir_GLEANR_12888:3]; intron [Dvir\GJ12956-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCCAGGCGCAATGAACGATCAGGATTACCAGCAGGACTACGACTATGATGGTAAAGTTAACCAATCGAAACATCAGCTAGCTTCAGCTCATTACAACTGCGCACTTCATAAATTATGCTAGTGCCCCCCCGCCCCGCTCCCACAAAACTAAAAAATCAAACCAAAGTGTGACCGAGTTGCCCAACTATTTAACTAACTCTCTGGTCTGTCTACAACTGTTTTGCCTTTACACACAGATCACGATCCCGACCAGGACGAGCTCGACTCGGATGATGAGTACGCGCCG
**************************************************((((((..................((((......))))............(((((.((((...))))..)))))..................((((((........((.((((.((.((.....((((....)))).........)).)).)))).)).........)))))).))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 M027
male body		 M028
head
 M061
embryo
 SRR060658
140_ovaries_total
 SRR060668
160x9_males_carcasses_total
 SRR060657
140_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 V047
embryo
 SRR060667
160_females_carcasses_total
 SRR1106728
larvae
............................................................................................................................................................................................................................................ATCACGATCCCGACCAGGACGAGCTC........................ 26 0 1 3.00 3 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................GACTCGGATGATGAGTACGC.... 20 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0
................................................................................................................................................................................................................................................CGATCCCGACCAGGACGAGCTC........................ 22 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...........TGAACGATCAGGATTACC................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............CGATCAGGATTACCAGCAGGACT........................................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................GATCCCGACCAGGACGAGC.......................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................GACGAGCTCGACTCGGATGATGAGTACGC.... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................GATCCCGACCAGGACGAGCTC........................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TCACGATCCCGACCAGGACGAGCTC........................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CAGGATTACCAGCAGGACT........................................................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................GGTCAGGATTACCAGCAG............................................................................................................................................................................................................................................................ 18 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................GATCACGATCCCGACCAGGACGAGCTC........................ 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................CGAGCTCGACTCGGATGATGA.......... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................TATCACGATCCCGACCAGGACGAGCTC........................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................CACGATCCCGACCAGGACGA............................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................AGCTCGACTCGGATGATGAA......... 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................CTCGGATGATAAGTACGC.... 18 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................ACGATCCCGACCAGGACGAGCTC........................ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................AGCTCGACTCGGATGATGAG......... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............GAACGATCAGGATTACCAGCAGGACT........................................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................CGACTCGGATGATGAGTACGCGC.. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................GACTCGGATGATGAGTACGCGCC. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...AGGCGCAATGAACGATCAGGATTA................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................ATAATTTATGCTAGTGCCC................................................................................................................................................................ 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................GAGCTCGACACGGATCACGA.......... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................TAGCCTCGGATGATGAATA....... 19 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................AGCTAGACTCAGATGATGAT......... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................CGAATTTGATGGTAAAGT..................................................................................................................................................................................................................................... 18 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................ATTATCAGCAGGACT........................................................................................................................................................................................................................................................ 15 1 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................GCCCAACTATCTCACTAAA......................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

CGGTCCGCGTTACTTGCTAGTCCTAATGGTCGTCCTGATGCTGATACTACCATTTCAATTGGTTAGCTTTGTAGTCGATCGAAGTCGAGTAATGTTGACGCGTGAAGTATTTAATACGATCACGGGGGGGCGGGGCGAGGGTGTTTTGATTTTTTAGTTTGGTTTCACACTGGCTCAACGGGTTGATAAATTGATTGAGAGACCAGACAGATGTTGACAAAACGGAAATGTGTGTCTAGTGCTAGGGCTGGTCCTGCTCGAGCTGAGCCTACTACTCATGCGCGGC
**************************************************((((((..................((((......))))............(((((.((((...))))..)))))..................((((((........((.((((.((.((.....((((....)))).........)).)).)))).)).........)))))).))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 M047
female body
 SRR060684
140x9_0-2h_embryos_total
 SRR060655
9x160_testes_total
 V116
male body		 SRR1106729
mixed whole adult body
 M027
male body		 SRR060682
9x140_0-2h_embryos_total
.........................................................................................................................ACGGGTGGGCGTGGCGGGGGT................................................................................................................................................ 21 3 11 1.09 12 6 5 0 0 1 0 0 0
.........................................................................................................................................................................................................................................GTCTAGTGCTAGGGATCGTT................................. 20 3 4 0.25 1 1 0 0 0 0 0 0 0
..........TACTGGTTAGTCCTGATGG................................................................................................................................................................................................................................................................. 19 3 8 0.13 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................TTGGTTTCGCACTGGCTTAC............................................................................................................ 20 3 10 0.10 1 0 0 1 0 0 0 0 0
..................................................................................................CGCGGGAAGTATTGAAT........................................................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 0 1 0 0
................................................................................................TACGCGGGAAGTATTGAAT........................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1
................................................................................................TACGCGTGAAGTATTGAA............................................................................................................................................................................ 18 2 20 0.05 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................TTGGGAGAGAAGACAGATG......................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:4338492-4338777 + dvi_18294 GCCAGGCGCAATGAACGATCAGGATTACCAGC---AGGACTACGACTATGATGGTAAAGT--TA------------------------------------------------------------ACC---------------------------AA-------------------------------T--------------CGAAA--------CA-------TC-AGC--------TAG---CTTCAGCTCATTA---CAAC--TGCGCACTTCATAAATTATGCTAGTGCCCCCCCGCCCCGCTCCCACAAAA-----------C----------------TAAAAAAT-CAAACCAAAGT------------------------------------------------GTGA-----------------CCGAGTTGCCCA---ACTATTTAA-CTAACTCTCT-GGTCT-----------GTCTACAAC-----------T---------------GTTT-TGCCTT------TACACACAGATCACGATCCCGACCAGGACGAGCTCGACTCGGATGATGAGTACGCGCCG
droMoj3 scaffold_6680:2753436-2753727 + GCCAGGCGCCATGAACGATCAGGACTATCAGC---AGGACTATGACTATGATGGTAAACA--TA------------------------------------------------------------ATC---------------------------AA-------------------------------T--------------ACGAA--------CACCA------AAGCTCTCTCTCTAG--CTTTCAGCTCATTAACA---A--CGCGCACTTCATAAC-TATGCTAGTGCCC----------------TATGC-----------CCTGCTCCTCCTGCTCTCACAATG-ACAGCAAT-TGTGCAA----------------------------TAG------------------------------------GTTGCCTCCAGTTGCTATTTAAACTAA-------------------------------------------ACCGCCTCAATCTCTCCTCCTTG----------CCTCCGCAGATCACGATCCCGATCAGGATGAGCTCGACTCGGATGATGAGTATGCGCCG
droGri2 scaffold_15110:10484417-10484722 - GCCCGGCGCCATGAACGATCAGGACTACCAGC---AGGACTACGACTATGATGGTAAAGA--CA------------------------------------------------------------AGCCAAAAGAAAAGAAAAAAAGATAAAAGAAATAC--------------------------TA-------------------A--------CACCAACA-AACAGC--------TAG---CTTCAGCTCATTA---CAAA--TGCGCACTTCATAAACTATGCTAGTGCCC----------------CAAAT-----------CCTGTA------------AAAGCCC-CTA-----TGTGAAA----------ATCTATAATAAACAACTACAGCTGAGACTCGTATGTT---------------------------------------TAA-CT-----TCT-G---T-----------GTCT----------------T---------------CTTT-TGC---------CCTGCACAGATCACGATCCCGACCAGGATGAGCTCGACTCGGATGATGATTATGCGCCG
droWil2 scf2_1100000004768:1600750-1601029 - GCCAGGCGCCATGAACGATCAGGACTATCAGCATCAGGATTATGATTATGATGGTAAACGTCTT-------------------GTT-TCATCT-AACTA---ACTA------------------A---------------------------------------------------------------------------------------------CTAAT-TAAAGC--------AAG---CTTCAGCTCATTAACCAA-A--TGCGCACTTCATAAT-TACGCTAGTGCTT----------------GAAAACTTTATATTTAT----------------TTAAACA-ACATAATA-TGTGCAA-------------------------------------------------------------------ATTTTTTTC-----------------------------A-----------GTCTATAACTAATTAAGACAATTG-------------------TTTT------CATTTACAGATCACGATCCCGATCAAGATGAGCTAGATTCAGATGATGAGTATGCCCCA
dp5 XR_group6:6764579-6764590 - GCCAGGCGCTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13337:9717699-9717875 + GCCAGGCGCCGTTAATGATCAGGACTACCAGC---AGGACTACGACTACGATGGTAAATC--CCATCC------------------CCCACCC-----CTTA---AACCTCAC----------------------------------------------------CATCCATCCCGTAATACCCCCAA-------------------AAAATTCCC--TTAGA-GTAGCT--------AACCCCCCTCAGCTCATTAACAAAAAAGTGCGCACCTCATAAATTATGCTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396569:1631361-1631707 - GCCAGGCGCCGTCAACGATCAGGACTACCAGC---AGGACTACGACTACGATGGTAAATC--CCATTC------------------CCC------------------------------------------------------------------------CCCCCATCCATCCCGTAAT--CCCCAC-------------------CAGATATCC--TCGAA-GTAGCT--------AACCCCCCTCAGCTCATTAACAAAAG--TGCGCACCTCATAAGTTATGCTCGA----------------------AAACTATATATCT-----------------------CA-AGATTATA-TA-GCAACCCCCCCTCT-TATAGA----------ATAGAAGAAACTTGCATTCCCCCCACCTTCCCACGAACCC-------------------TAG-TT-----CCTAG---TATCCTTCTCTATTCT---------------AATTG-------------------GTCTCATCCCCCAAAACAGATCACGATCCCGATCAGGACGAGCTCGACTCTGACGACGAGTACGCCCCT
droKik1 scf7180000302577:491625-491776 + TGTCCCTGTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTGTCCCT----------------CAAAA-----------C----------------CCAAGCCC-CAAGGCA-T--------------------------------------------------GTGT-----------------AGGATTTGTCA--------------TAAAACCTCT-CACTT-----------ATTCCCAAA-----------A---------------TCTT-TAACCT------TTTGTACAGATCACGATCCGGATCAGGATGAGCTCGACTCGGACGATGAGTATGCCCCG
droFic1 scf7180000453052:86642-86806 - GCCAGGCGCCGTCAACGATCAGGACTACCAGC---AGGACTACGACTACGATGGTAATTC--CC----CACCT----------CCCTCTACCC-----TTTACCCAACCCCTCCC---GAAA--A------------------------------CCG------------------------------------------------------TCCCCTTTAGAGTTAGAT--------CAA---CCTCAGCTCATCAACAAAAA--CGCGCACTTCATAACGTATGCTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491249:1418779-1418967 + GCCCGGTGCCGTCAACGATCAGGATTACCAGC---AGGACTACGACTACGATGGTAATTT--CC----CAGCCCAGACCCAC-ACCCACACCCGAATCG-TACCCAGCCCCTCCTATAGAGAAAA------------------------------C-----------------------------CAACC------------------AAATTCCCTTCTAGA-TTAGCC--------AAC---CCTCAGCTCATTAACAAAAA--CGCGCACTTCATAATGTATGCTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000767681:772-949 - GCCCGGCGCCGTCAACGATCAGGATTACCAGC---AGGACTACGACTACGATGGTAATTC--CCAGTCCA-----------CAGCCCACACCTGAACCG------AACCCCTCCT---GAGA--A------------------------------CC--C-------------------------CACCCGAG---------------GAAACCCCTTCTAGA-TTAGCC--------AAC---CCTCAGCTCATTAACAAAAA--CGCGCACTTCATAATGTATGCTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302428:369221-369274 - GCCGGGGGCCGTCAACGATCAGGATTACCAGC---AGGACTACGACTACGATGGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415785:101520-101692 + GCCAGGAGCCGTCAACGATCAGGATTACCAGC---AGGACTACGACTACGATGGTAATTC--CC----------------------------TGAGTCC------AACCTATCCT---GAGA--A------------------------------TCCCCCCCAC--------------------CAACCAAGAACCCAACC----------CCACTTTTAGA-TTAGCC--------AAA---CCTCAGCTCATTAACAAAAA--CGCGCACTTCATAATGTATGCTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409466:1465877-1465941 - TTTCCCCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTAGATCACGATCCGGATCAGGATGAGCTTGACTCGGACGATGAGTATGCCCCA
dm3 chr3L:3722734-3722909 - GCCAGGGGCCGTCAACGATCAGGATTATCAGC---AGGACTACGACTACGATGGTAATTC--CC-------------------GCCCCTACCCGAACCG------AAACCCAACC---AAAA--A------------------------------TCCCC-------------------------CACCCGGGAACCATACA-----------CCCTTCTAGA-TTAGCC--------AAA---CCTCAGCTCATTAACAAAAT--CGCGCACTTCATAATGTATGCTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 3l:3613944-3614120 - GCCAGGGGCCGTCAACGATCAGGATTATCAGC---AGGACTACGACTACGATGGTAATTC--CC-------------------GCCCCCACCCGAACCG------AACCCCACCC---AAAA--A------------------------------TCCCC-------------------------CACCCGGGAACCCGACC----------CCCTTTCTAGA-TTAGCC--------AAC---CCTCAGCTCATTAACAAAAT--CGCGCACTTCATAATGTATGCTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_2:3714417-3714592 - GCCAGGGGCCGTCAACGATCAGGATTATCAGC---AGGACTACGACTACGATGGTAATTC--CC-------------------GCC-CCACCCGAACCG------AACCCCACCC---AAAA--A------------------------------TCCCC-------------------------CGCCCGGGAACCCGACC----------CCCTTTCTAGA-TTAGCC--------AAC---CCTCAGCTCATTAACAAAAT--CGCGCACTTCATAATGTATGCTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3L:4275224-4275277 - GCCAGGCGCCGTTAACGATCAGGATTATCAGC---AGGACTACGACTACGATGGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4784:6418110-6418268 - GCCAGGCGCCGTCAACGATCAGGATTATCAGC---AGGACTACGACTACGATGGTAATTC--CC-------------------GCCCCTACCCGAACCA------AACCTCGCCC---TAAA--A------------------------------TCCC--------------------------CAC---------------------------CCTCTAGA-TTAACC--------CAC---CCTCAGCTCATTAACAAAAA--CGCGCACTTCATAATGTATGCTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GCCAGGCGCAATGAACGATCAGGATTACCAGC---AGGACTACGACTATGATGGTAAAGT--TA------------------------------------------------------------ACC---------------------------AA-------------------------------T--------------CGAAA--------CA-------TC-AGC--------TAG---CTTCAGCTCATTA---CAAC--TGCGCACTTCATAAATTATGCTAGTGCCCCCCCGCCCCGCTCCCACAAAA-----------C----------------TAAAAAAT-CAAACCAAAGT------------------------------------------------GTGA-----------------CCGAGTTGCCCA---ACTATTTAA-CTAACTCTCT-GGTCT-----------GTCTACAAC-----------T---------------GTTT-TGCCTT------TACACACAGATCACGATCCCGACCAGGACGAGCTCGACTCGGATGATGAGTACGCGCCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACGATCCCGACCAGGACGAGCTC........................2613.003001100000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGGATGATGAGTACGC....2012.002000000000000000000000000000000010001000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCCCGACCAGGACGAGCTC........................2212.002200000000000000000000000000000000000000000000000000000000000000
...........TGAACGATCAGGATTACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
...............CGATCAGGATTACCAGC---AGGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCGACCAGGACGAGC..........................1911.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGCTCGACTCGGATGATGAGTACGC....2911.001100000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCGACCAGGACGAGCTC........................2111.001010000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGATCCCGACCAGGACGAGCTC........................2511.001001000000000000000000000000000000000000000000000000000000000000
...................CAGGATTACCAGC---AGGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACGATCCCGACCAGGACGAGCTC........................2711.001000000000000000000100000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCTCGACTCGGATGATGA..........2111.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGATCCCGACCAGGACGA............................2011.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCGACTCGGATGATGAA.........2011.001000000001000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCCCGACCAGGACGAGCTC........................2311.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCGACTCGGATGATGAG.........2011.001000000001000000000000000000000000000000000000000000000000000000
............GAACGATCAGGATTACCAGC---AGGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000100000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTCGGATGATGAGTACGCGC..2311.001000000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGGATGATGAGTACGCGCC.2311.001000100000000000000000000000000000000000000000000000000000000000
...AGGCGCAATGAACGATCAGGATTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000010000000000000000000000000000000000000
droMoj3
GCCAGGCGCCATGAACGATCAGGACTATCAGC---AGGACTATGACTATGATGGTAAACA--TA------------------------------------------------------------ATC---------------------------AA-------------------------------T--------------ACGAA--------CACCA------AAGCTCTCTCTCTAG--CTTTCAGCTCATTAACA---A--CGCGCACTTCATAAC-TATGCTAGTGCCC----------------TATGC-----------CCTGCTCCTCCTGCTCTCACAATG-ACAGCAAT-TGTGCAA----------------------------TAG------------------------------------GTTGCCTCCAGTTGCTATTTAAACTAA-------------------------------------------ACCGCCTCAATCTCTCCTCCTTG----------CCTCCGCAGATCACGATCCCGATCAGGATGAGCTCGACTCGGATGATGAGTATGCGCCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................GACTATCAGC---AGGACTATGACTATGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGATCAGGATGAGCTCGA......................2011.001000001
................GATCAGGACTATCAGC---AGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droGri2
GCCCGGCGCCATGAACGATCAGGACTACCAGC---AGGACTACGACTATGATGGTAAAGA--CA------------------------------------------------------------AGCCAAAAGAAAAGAAAAAAAGATAAAAGAAATAC--------------------------TA-------------------A--------CACCAACA-AACAGC--------TAG---CTTCAGCTCATTA---CAAA--TGCGCACTTCATAAACTATGCTAGTGCCC----------------CAAAT-----------CCTGTA------------AAAGCCC-CTA-----TGTGAAA----------ATCTATAATAAACAACTACAGCTGAGACTCGTATGTT---------------------------------------TAA-CT-----TCT-G---T-----------GTCT----------------T---------------CTTT-TGC---------CCTGCACAGATCACGATCCCGACCAGGATGAGCTCGACTCGGATGATGATTATGCGCCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGACTCGGATGATGATTATGCG...2411.00110
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGGATGATGATTATGCGCC.2211.00110
droWil2
GCCAGGCGCCATGAACGATCAGGACTATCAGCATCAGGATTATGATTATGATGGTAAACGTCTT-------------------GTT-TCATCT-AACTA---ACTA------------------A---------------------------------------------------------------------------------------------CTAAT-TAAAGC--------AAG---CTTCAGCTCATTAACCAA-A--TGCGCACTTCATAAT-TACGCTAGTGCTT----------------GAAAACTTTATATTTAT----------------TTAAACA-ACATAATA-TGTGCAA-------------------------------------------------------------------ATTTTTTTC-----------------------------A-----------GTCTATAACTAATTAAGACAATTG-------------------TTTT------CATTTACAGATCACGATCCCGATCAAGATGAGCTAGATTCAGATGATGAGTATGCCCCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGATCCCGATCAAGATGAGC..........................2212.00200011
........................CTATCAGCATCAGGATTATGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGAGCTAGATTCAGATGATGA..........2511.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTAGATTCAGATGAT............2011.00100100
.............AACGATCAGGACTATCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
..........................ATCAGCATCAGGATTATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTAGATTCAGATGATGA..........2311.00100010
.................ATCAGGACTATCAGCATCAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...................CAGGACTATCAGCATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
............GAACGATCAGGACTATCAGCATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGATTCAGATGATGA..........1811.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCGATCAAGATGAGC..........................1811.00100010
......CGCCATGAACGATCAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
..................................CAGGATTATGATTATGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAGATTCAGATGATGA..........2011.00100010
............................CAGCATCAGGATTATGATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGATTCAGATGATGAGTATGCC...2411.00101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAGATGATGAGTATGCCC..2111.00100010
dp5
GCCAGGCGCTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droAna3
GCCAGGCGCCGTTAATGATCAGGACTACCAGC---AGGACTACGACTACGATGGTAAATC--CCATCC------------------CCCACCC-----CTTA---AACCTCAC----------------------------------------------------CATCCATCCCGTAATACCCCCAA-------------------AAAATTCCC--TTAGA-GTAGCT--------AACCCCCCTCAGCTCATTAACAAAAAAGTGCGCACCTCATAAATTATGCTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................C---AGGACTACGACTACGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
........................CTACCAGC---AGGACTACGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..........GTTAATGATCAGGACTACCAGC---A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
............TAATGATCAGGACTACCAGC---AGGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
......................................................................................CCCACCC-----CTTA---AACCTCGA----------------------------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501001000
.................ATCAGGACTACCAGC---AGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501000001
droBip1
GCCAGGCGCCGTCAACGATCAGGACTACCAGC---AGGACTACGACTACGATGGTAAATC--CCATTC------------------CCC------------------------------------------------------------------------CCCCCATCCATCCCGTAAT--CCCCAC-------------------CAGATATCC--TCGAA-GTAGCT--------AACCCCCCTCAGCTCATTAACAAAAG--TGCGCACCTCATAAGTTATGCTCGA----------------------AAACTATATATCT-----------------------CA-AGATTATA-TA-GCAACCCCCCCTCT-TATAGA----------ATAGAAGAAACTTGCATTCCCCCCACCTTCCCACGAACCC-------------------TAG-TT-----CCTAG---TATCCTTCTCTATTCT---------------AATTG-------------------GTCTCATCCCCCAAAACAGATCACGATCCCGATCAGGACGAGCTCGACTCTGACGACGAGTACGCCCCTSizeHit CountTotal NormTotal
No Reads
droKik1
TGTCCCTGTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTGTCCCT----------------CAAAA-----------C----------------CCAAGCCC-CAAGGCA-T--------------------------------------------------GTGT-----------------AGGATTTGTCA--------------TAAAACCTCT-CACTT-----------ATTCCCAAA-----------A---------------TCTT-TAACCT------TTTGTACAGATCACGATCCGGATCAGGATGAGCTCGACTCGGACGATGAGTATGCCCCGSizeHit CountTotal NormTotal
No Reads
droFic1
GCCAGGCGCCGTCAACGATCAGGACTACCAGC---AGGACTACGACTACGATGGTAATTC--CC----CACCT----------CCCTCTACCC-----TTTACCCAACCCCTCCC---GAAA--A------------------------------CCG------------------------------------------------------TCCCCTTTAGAGTTAGAT--------CAA---CCTCAGCTCATCAACAAAAA--CGCGCACTTCATAACGTATGCTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GCCCGGTGCCGTCAACGATCAGGATTACCAGC---AGGACTACGACTACGATGGTAATTT--CC----CAGCCCAGACCCAC-ACCCACACCCGAATCG-TACCCAGCCCCTCCTATAGAGAAAA------------------------------C-----------------------------CAACC------------------AAATTCCCTTCTAGA-TTAGCC--------AAC---CCTCAGCTCATTAACAAAAA--CGCGCACTTCATAATGTATGCTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GCCCGGCGCCGTCAACGATCAGGATTACCAGC---AGGACTACGACTACGATGGTAATTC--CCAGTCCA-----------CAGCCCACACCTGAACCG------AACCCCTCCT---GAGA--A------------------------------CC--C-------------------------CACCCGAG---------------GAAACCCCTTCTAGA-TTAGCC--------AAC---CCTCAGCTCATTAACAAAAA--CGCGCACTTCATAATGTATGCTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GCCGGGGGCCGTCAACGATCAGGATTACCAGC---AGGACTACGACTACGATGGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GCCAGGAGCCGTCAACGATCAGGATTACCAGC---AGGACTACGACTACGATGGTAATTC--CC----------------------------TGAGTCC------AACCTATCCT---GAGA--A------------------------------TCCCCCCCAC--------------------CAACCAAGAACCCAACC----------CCACTTTTAGA-TTAGCC--------AAA---CCTCAGCTCATTAACAAAAA--CGCGCACTTCATAATGTATGCTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TTTCCCCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTAGATCACGATCCGGATCAGGATGAGCTTGACTCGGACGATGAGTATGCCCCASizeHit CountTotal NormTotal
No Reads
dm3
GCCAGGGGCCGTCAACGATCAGGATTATCAGC---AGGACTACGACTACGATGGTAATTC--CC-------------------GCCCCTACCCGAACCG------AAACCCAACC---AAAA--A------------------------------TCCCC-------------------------CACCCGGGAACCATACA-----------CCCTTCTAGA-TTAGCC--------AAA---CCTCAGCTCATTAACAAAAT--CGCGCACTTCATAATGTATGCTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................TCAGGATTATCAGC---AGGACTACGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AACGATCAGGATTATCAGC---AGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CCAGGGGCCGTCAACGATCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GTCAACGATCAGGATTATCAGC---AGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................CTAGA-TTAGCC--------AAA---CCTCAGC..........................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GCCAGGGGCCGTCAACGATCAGGATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GTCAACGATCAGGATTATCAGC---AGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ATCAGGATTATCAGC---AGGACTACGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CAACGATCAGGATTATCAGC---AG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................AGA-TTAGCC--------AAA---CCTCAGCTCAT......................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GTCAACGATCAGGATTATCAGC---A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AACGATCAGGATTATCAGC---AGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TCAGGATTATCAGC---AGGACTACGACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CAACGATCAGGATTATCAGC---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ACGATCAGGATTATCAGC---AGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AGGGGCCGTCAACGATCAGGATTATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TTATCAGC---AGGACTACGACTACGATGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AACGATCAGGATTATCAGC---ATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GGATTATCAGC---AGGACTACGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GTCAACGATCAGGATTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAGGATTATCAGC---AGGACTACGACTAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AACGATCAGGATTATCAGC---AGGACTACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CGATCAGGATTATCAGC---AGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ACGATCAGGATTATCAGC---AGGACTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TCAACGATCAGGATTATCAGC---AGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAGGATTATCAGC---AGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TCAACGATCAGGATTATCAGC---AGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAGGATTATCAGC---AGGACTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCCAGGGGCCGTCAACGATCAGGATTATCAGC---AGGACTACGACTACGATGGTAATTC--CC-------------------GCCCCCACCCGAACCG------AACCCCACCC---AAAA--A------------------------------TCCCC-------------------------CACCCGGGAACCCGACC----------CCCTTTCTAGA-TTAGCC--------AAC---CCTCAGCTCATTAACAAAAT--CGCGCACTTCATAATGTATGCTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................AGGATTATCAGC---AGGACTACGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200001010000000000
........................TTATCAGC---AGGACTACGACTACGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200100001000000000
..................TCAGGATTATCAGC---AGGACTACGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
....................AGGATTATCAGC---AGGACTACGACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
...............CGATCAGGATTATCAGC---AGGACTACGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.........CGTCAACGATCAGGATTATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
......................GATTATCAGC---AGGACTACGACTAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
...........TCAACGATCAGGATTATCAGC---AGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
droSec2
GCCAGGGGCCGTCAACGATCAGGATTATCAGC---AGGACTACGACTACGATGGTAATTC--CC-------------------GCC-CCACCCGAACCG------AACCCCACCC---AAAA--A------------------------------TCCCC-------------------------CGCCCGGGAACCCGACC----------CCCTTTCTAGA-TTAGCC--------AAC---CCTCAGCTCATTAACAAAAT--CGCGCACTTCATAATGTATGCTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................GATTATCAGC---AGGACTACGACTACGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000
droYak3
GCCAGGCGCCGTTAACGATCAGGATTATCAGC---AGGACTACGACTACGATGGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................ATTATCAGC---AGGACTACGACTACGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
........................TTATCAGC---AGGACTACGACTACGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000
droEre2
GCCAGGCGCCGTCAACGATCAGGATTATCAGC---AGGACTACGACTACGATGGTAATTC--CC-------------------GCCCCTACCCGAACCA------AACCTCGCCC---TAAA--A------------------------------TCCC--------------------------CAC---------------------------CCTCTAGA-TTAACC--------CAC---CCTCAGCTCATTAACAAAAA--CGCGCACTTCATAATGTATGCTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................GGATTATCAGC---AGGACTACGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000020
..........GTCAACGATCAGGATTATCAGC---A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000
............CAACGATCAGGATTATCAGC---A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.................ATCAGGATTATCAGC---AGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
..........GTCAACGATCAGGATTATCAGC---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100

Generated: 05/16/2015 at 11:21 PM