ID:

dvi_18194

 Coordinate:

scaffold_13049:3645354-3645504 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.7 -23.6 -23.6

Flybase annnotation

CDS [Dvir\GJ12466-cds]; exon [dvir_GLEANR_12432:2]; intron [Dvir\GJ12466-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCGCGATATCGGCGAGATGCCAGTCACAAAGCGTTCACGCTCGGACTCGGGTAAGTGTTTCGTCTTGTTACGGGCGGGGTGGGAGAAGGGGTCAACTTGTTTATATGCATAAGTATGTATCTCCATAGAGTATATATATATTTATATGCGTAAGTTCACATAAAACAAAAAGAGAAATAAATATATATACAATGTAGGTTAATGAAACGCCAGGCCACAACAAACCTAACAAAAGGAAAATATATATATAT
**************************************************(((..((((((.(((((((..(((((((.(((.........))).))))))).((((((((((((((((((((....)))...)))))))))..))))))))...........))))...)))))))))..))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060658
140_ovaries_total
 GSM1528803
follicle cells		 SRR060667
160_females_carcasses_total
 SRR060678
9x140_testes_total
 M027
male body		 M028
head
 SRR060672
9x160_females_carcasses_total
 SRR060654
160x9_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060679
140x9_testes_total
 M047
female body
 SRR060674
9x140_ovaries_total
 SRR060666
160_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 V053
head
 V116
male body		 SRR060663
160_0-2h_embryos_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR1106728
larvae
 SRR060655
9x160_testes_total
 SRR060671
9x160_males_carcasses_total
...........................AAAGCGTTCACGCTCGGACTCGGAC....................................................................................................................................................................................................... 25 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AGATGCCAGTCACAAAGCGTT........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................CACTCGGGTAAGTGTGTCGAC........................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................ACGGTCGGGGTGGGAGAAGGGGT............................................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CGGGCGGGGTGGGAGAAGGGG................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CGGGCGGGGTGGGAGAAGGGGT............................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................ATATACAATGTAGGTTAATGA.............................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TAGGTTGATGAAGCGCCAGGC.................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GATATCGGCGAGATGCCAGT................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GCGCGATATCGGCGAGATGCCAGT................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................GGACTCGGGTGGGTGTTTCGT............................................................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................CGGGTAAGTGTTTCGTCTTGTC...................................................................................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GATGCCAGTCACAAAGCGTTCA...................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................CAATGTAGGTTAATGAAACGCC........................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................CAAAGCGTTCACGCTCGGACT............................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................GGCGTTCACGCTCGGGCTCGG......................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TTAGAGAAGGGGTCAACTC......................................................................................................................................................... 19 3 12 0.92 11 1 0 0 0 4 1 1 0 0 0 0 0 0 1 0 0 0 0 2 0 1 0 0 0 0
.................................................................................................................................................................................TGAATATATTTACACTGTAGGT.................................................... 22 3 3 0.67 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
...........................................................................GGGGTGGGAGAAGGGGTT.............................................................................................................................................................. 18 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................TTAGAGAAGGGGTCAACT.......................................................................................................................................................... 18 2 5 0.40 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................GCTTAGAGAAGGGGTCAACT.......................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................TAGAGAAGGGGTCAACTC......................................................................................................................................................... 18 3 20 0.25 5 0 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1
................................GTTCACGCTCCGGCTCGGTTA...................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................ATATATTTACACTGTAGGT.................................................... 19 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................GGGGTGGGAGACAGTGTCA............................................................................................................................................................. 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0
..........................................................................CGGGGTGGGAGACAGTGTC.............................................................................................................................................................. 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................GAGAAGGGGGCAACT.......................................................................................................................................................... 15 1 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
GCGCGAGATCGCCGAGACG........................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGAGATATACAATGTCGGT.................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................GGTTCGTCCTGTCACGGG................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................GGGGTGGGAGACAGTGTC.............................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................CTTAGAGAAGGGGTCAACT.......................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGCGCTATAGCCGCTCTACGGTCAGTGTTTCGCAAGTGCGAGCCTGAGCCCATTCACAAAGCAGAACAATGCCCGCCCCACCCTCTTCCCCAGTTGAACAAATATACGTATTCATACATAGAGGTATCTCATATATATATAAATATACGCATTCAAGTGTATTTTGTTTTTCTCTTTATTTATATATATGTTACATCCAATTACTTTGCGGTCCGGTGTTGTTTGGATTGTTTTCCTTTTATATATATATA
**************************************************(((..((((((.(((((((..(((((((.(((.........))).))))))).((((((((((((((((((((....)))...)))))))))..))))))))...........))))...)))))))))..))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060668
160x9_males_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060664
9_males_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060679
140x9_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 M027
male body		 SRR060671
9x160_males_carcasses_total
 SRR060676
9xArg_ovaries_total
 V116
male body		 SRR060669
160x9_females_carcasses_total
 V053
head
 SRR060665
9_females_carcasses_total
 SRR060667
160_females_carcasses_total
 M028
head
 SRR060689
160x9_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060683
160_testes_total
..........................................................................................................................................ATAACTATACGAATTCAAG.............................................................................................. 19 2 8 27.25 218 21 42 39 25 16 8 17 10 8 6 1 1 7 0 0 3 2 4 4 0 0 2 1 1 0 0
..........................................................................................................................................ATAACTATACGAATTCAAGT............................................................................................. 20 2 3 9.67 29 10 4 1 2 2 4 0 0 1 1 0 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................TAACTATACGAATTCAAGT............................................................................................. 19 2 20 2.10 42 9 0 0 4 6 6 1 0 0 2 1 0 0 0 1 1 1 3 1 3 0 1 0 0 2 0
..............................................AGCCCATTCACAAAGCAGGAC........................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCTCTTCCCCAGTTGAACAAA..................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CGGTCAGTGTTTCGCAAGTGC.................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........CCGCTCTACGGTCAGTGTTTC............................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ATATATGTTACATCCAATTAC............................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................AACAAATATACGTATTCATACATAGAGG............................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ATAACTATACGAATTCAAGTC............................................................................................ 21 3 20 0.65 13 0 3 3 0 0 0 0 2 0 0 0 0 3 0 0 0 0 0 2 0 0 0 0 0 0 0
.....................................................................................TTCCGCAGTTGAACTAGTATA................................................................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................CGCAAGTGCGGGGCTGAG........................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................CGGAATTGCGAGCCTGTGC.......................................................................................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTGGTTGAATTGTTTTCCTGT............ 21 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TATTGTTTTTCTCTTTAT........................................................................ 18 1 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:3645304-3645554 - dvi_18194 GCGCGATATCGGCGAGATGCCAGTCACAAAGCGTTCACGCTCGGACTCGGGTAAGTGTTTCG--TCTTGTTACG-------------------------GGCGGGGTGG------GAGAAGGGGTCAACTTGTTTATATGCATA-----------------------------------------------------------------------------AGTATGTATCTCCATAGA---------GTATATATATATTTA----------TATGC---------------------------------------GT-------AAGTTCACATAAAA--------------------------------------------------------------------CAAA------AAG---------------AGAAATA--AATATATATACAATG--------TAGGTT--AATG------------AAAC-------------------------------------------------------------------------------------------------------------------------------GCC-----------------------AGGCCACAACAAACCTAACA--AAAGGAAA------------------------ATATAT-----A------TATAT
droMoj3 scaffold_6654:403403-403644 + GCGCGATATCGGCGAAATGCCAGCCACAAAGCGTTCGCGCTCAGACTCGGGTAAGTGTTTCG--TCTG-AT-CGT-------------------------------------------------------------------------------------GGATGCACAA--AATTCGT-------ATTAAGCATAT-----------------------AAGTATATAT--CAATTGA---------GTATATATATATAAATATATATTTATGTAC---------------------------------------GT-------AAGTTT--------------------------------------------------------------------------ATCAAA------GAGCAAGATAAATA-----TATACA--TA---------------TATATGTAGGTA--AATG------------AAAC-------------------------------------------------------------------------------------------------------------------------------GCAAGGCAA----------------CAA----------ATCAAACA--AAAGGAATATATG------------------------T-----A------TATAC
droGri2 scaffold_15110:7794097-7794350 - GCGCGAAATCGGCGAAATGCCAGTCACAAAGAGGTCGCGTTCTGACTCGGGTAAGTGTCTTC--GCTA-TT-C-TCGCGAA----TTGCTTAT--GTACTATGTA-------------------------------------TAAGTA--TATGTG---TTTATC---TGCATAT---------------------------------------------------------------------------ATATATACATTTATATACATGTATGTAT--------GTATG-------------------------------TAGTGAGTTCATTCAAAAACAAAAGTAATACA-------------AACAAA-----ATATATGTA---------------------------------------------------------------------TGTA--------TAGGTT--AAAG------------AATC----------CACAA----------------------------------------------------------------------------------------------------------------GCAA-----------------------------------------------GGCATCAAAATG----------GAAA---ATATCT-----A------TATAT
droWil2 scf2_1100000004511:2433200-2433564 + GCGCGAAATCAATGATATGCCGGTGACAAAAAGATCGCGCTCCGATTCAGGTGAGTCTCATATCGATG-CT--TACATTAA--------------------------------------------------------------------------------------------TTGTTT-------AAATAAAATTTACAAAAACAAAACCCTCAAAATAATATATGTAT--ACCTTCTGTGTGCATTCGATATATACTTTTATATATATAAATGTATCTTTTTTTATATATATTATTAGTCTAAAACCATAAGTATGTATGTTG---G-------AATGA-------AAAAAAAAAAATGAATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTATTAAAATAATATATATATATATTTACTATATATC-CTATGTCTTTGTATATAAGTTCATTTGACA----AAAAAAAAAAAAACCAATC------------------AAACGA--TAGGAAAAAAAAAAG----------AAAC--------AAAACA-AA---------
dp5 XR_group3a:594639-594915 + GCGCGAAATTACGGAGATGCCAGCCACAAAGCGAACGCGCTCCGACTCGGGTAAGTGTCTTG--TCCG-G-----C-------------------------------------------------------------------------------A---TGGATCTACAACAGATCCAC-------AACAGAGATAT-----------------------ATATATGTAT--GCCTTCT--------CCTATGTATATGTATACGTACACGTATGTATTATATTCAGCATG-------------------------------TACT-------------------------------------------------------------------------------------------------------------------------------------------ATGTTAGAA--ATGG------------AAACAAA-----TCAA----------ATCA----------AAGCAAAGCAAAGAAAGCGCCCCCCTCCCCCTAAGGCATATAGGCATATGCTCTCTCT--CTGTGTGTGTGTATGTACTCT------------------------------------------------------------------------------------------------------------TATAT
droPer2 scaffold_23:624699-624991 + GCGCGAAATTACGGAGATGCCAGCCACAAAGCGAACGCGCTCCGACTCGGGTAAGTGTCTTG--TCCG-G-----C-------------------------------------------------------------------------------A---TGGATCTACAACAGATCCAC-------AACAGAGATAT-----------------------ATATATGTAT--GCCTTCT--------CCTATGTATATGTATACGTACACGTATGTATTATATTCAGCATG-------------------------------TACT-------------------------------------------------------------------------------------------------------------------------------------------ATGTTAGAA--ATGG------------AAACAAA-----TCAAATCAAATCAAATCA----------AAGCAAAGCAAAGCAAGCGCCCCCCTCCCCCTAAGGCATATAGGCATATGCTCTCTCTCTCTGTGTGTGTGTATGTACTCT---------------------------------------------------------------------------------------------TAT-----A------TATAC
droAna3 scaffold_13337:1948076-1948383 + GCGGGAGATAAGCGAAGTCCCAACC---AAGAGATCACGCTCCGACTCGGGTGAGTTTCAAC--TCCG-TTCCGTCCCTCAGACACTAACCATACATATGGTGGGGGAGCTCTTTAACT-------------------------------AAAGGA---GGGCTC------ACCTCGTTACAAGTTA-C---------------------------------------------------------------------------------------------------------------------------------------------------AAAA----------AAAAAATAAAGAATAAGTACAAAAAACAATGAATGAATGTGTATGTATGTGTAAG----AATCTTAAGAAACTTG------------------------------GCACA--TGTATGTAGGTTTTAATC---AAATAATCAAAAAAAAACA-ATCAACAAA------ATCCACGATC-----------------------------------------------------------------------------------------------------------------------------------------------AGC-AGAGCAGCAAG----------GAGC--------CCAGCTAC------ATAA
droBip1 scf7180000396569:1991270-1991532 + GCGGGAGATAAGCGAAGTTCCGACC---AAGAGATCACGCTCCGACTCGGGTGAGTTTCAAA--TCCG-TTCCGACCTTCAGACACAAACCAT--ATATGGCGGGGGAGCTCCTTGAAC------------------------------------A---AAGC------TCACCTCGAC-------ACC---------------------------------------------------------------------------------------------------------------------------------------------------AAAGA-------AACAAG--------------------AACAATGAATGAATGTGTACGTCTG----AG----AAT------CAACTTG------------------------------GCACATATCCATGTAGGTT--AATAATAATATATTCA-------ACA-ATCAACAAA------GTCCACGATCAGCAGAGCA-------------------------------------------------------------------------------------------------------------------------------------------AAGCAGCAAG----------GAGC--------CCGGCT------------
droKik1 scf7180000302510:1003340-1003540 + GCGCGAGATCAGCGACATGCCGGCCACCAAGAGATCGCGCTCCGACTCTGGTAAGTTTCCCA--TCTG-TT-CGTCTATAA----ATAACTAA--GTATGATGGA-------------------------------------ATGATA--ACCGAGGAGGCGGT----------------------CCC---------------------------------------------------------------------------------------------------------------------------------------------------AAA-----------------------------------AAC-A-----TGTTCAGTGTGT----------------------------G------------------------------GTTAA--------TAGGTC--AATC-----------A-------ACA-ATCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------CAA--CATCAAGTCCCCGAGGAGCCGTAAGGAGC--------CGGCT----AA-------
droFic1 scf7180000454113:576751-576955 + GCGAGAGATCAGCGATATGCCGGTCACGAAAAGATCGCGCTCCGACTCGGGTGAGTTTCACA--GCTG-TC-CGTCTATAA----ATAACTAT--GTATGATGGA-------------------------------------ATGATT--ACCGTG---GCGATC---AGCACATCGCC-------CCC---------------------------------------------------------------------------------------------------------------------------------------------------AAAG----------------------------------AAC-A-----TGTTGTGTATGTCTG----AG----AAT------GAGCTTG------------------------------GCACA--------TAGGTT--AAGC-----------A-------GCAAATCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------CA---------------AAG----------GAGC--------CGGCC----AAA-----T
droEle1 scf7180000491249:4091794-4092008 + GCGCGAAATCAGCGACATGCCGGCCACCAAAAGATCGCGCTCCGACTCGGGTGAGTTTCCCA--GCTG-TC-CGTCTATAA----ATAACTAT--GTATGATGGA-------------------------------------ATGATA--ACCGTG---GCGATCGGCAGCACATCGCC-------CCC---------------------------------------------------------------------------------------------------------------------------------------------------AAAA-----------------------------------AA-A-----TGTTGTGTATGTCTG----AG----AAT------GAGCTTG------------------------------GCACG--------TAGGTT--AATC-----------A-------ACAAATCAA----------------------------------------------------------------------------------------------------------------------------------------------------------TCATCGGA-ATCGGAATCCACGAG----------GAG---------------------------
droRho1 scf7180000776850:454095-454306 + GCGCGAGATCAGCGATATGCCGGCCACCAAAAGATCGCGCTCCGACTCGGGTGAGTTTCCCA--GCTG-TC-CGTCTATAA----ATAACTAT--GTATGATGGA-------------------------------------ATGATA--ACCGTG---GCGATC---AGTACATCGCT-------CCC---------------------------------------------------------------------------------------------------------------------------------------------------AAA-----------------------------------AAC-A-----TTTTGTGTATGTCTG----AA----AAT------AAGCTTG------------------------------GCACA--------TAGGTT--AATC-----------A-------ACAAATCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGAATCCACGAG----------GAGC--------CGGCA----AAA-----T
droBia1 scf7180000300910:1614962-1615026 - GCGCGAGATCAGCGATATGCCGGCCACCAAAAGATCGCGCTCCGACTCGGGTGAGTTTCCCA--GCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415095:312407-312661 + GCGCGAGATCAGCGATATGCCGGCCACCAAAAGATCGCGCTCCGACTCGGGTGAGTTTCCCA--GCTG-TC-CGTCTATAA----ATAGCTAT--GTATGATGGA-------------------------------------ATGATA--ACCGTG---GCGATC---AGCACATCGCC-------TCA---------------------------------------------------------------------------------------------------------------------------------------------------AAAA-------------AAATCA---------------AAC-A-----TGTTGTGTATGTCTG----AG----AAT------GAGCTTG------------------------------GCACA--------TAGGTT-CAATC-----------A-------AT------------------------------------------------------------------------------------------------------------------------GA---GAGCAACCAAAAACCAATCCAACAG-----------TCCACGA--AACGGAATCCACGAG----------GAGGAATCCCCACGGCCTT-----------
droEug1 scf7180000409007:320621-320847 - GCGCGAGATCAGCGATATGCCGACCACCAAGAGATCGCGCTCCGACTCCGGTGAGTTTCCCA--GATT-TT-CGTCTATAA----ATAACTAT--GTATAGAGGA-------------------------------------ATGATA--ACCGTA---GCGATC---AGCACATCGCT-------CCC---------------------------------------------------------------------------------------------------------------------------------------------------AAAA----------------------------------AAA-A----TTGTTGTGTATGTCTA----AAA---AAG------GAGCTTG------------------------------GCACA--------TAGGTT--AATC-----------A-------ACA----------------------------------------------------------------------------------------------------------------------------AAGCAA----------------CAA-----------TCTACGA--AACGGAATCCACAAG----------GAGC--------CGGCCTTCC---------
dm3 chr3L:1501585-1501848 - GCGCGAGATCAGCGACATGCCGGCCACCAAAAGAACGCGTTCCGATTCGGGTGAGTTTCCCA--GCTG-TT-TGTCTATAA----ATAACTAT--GTATGATGGA-------------------------------------ATGATATTGCCGCG---GCGATC---AGCACATCGCC-------CCC---------------------------------------------------------------------------------------------------------------------------------------------------AAA-----------------------------------AAC-A-----TGTTGTGTGTGTCTG----GCAATGAAT------GAGCTTGACACTTACAATACATACA--TACATATGTGGCACG--------TAGGTTTCAATC-----------G-------ACA----------------------------------------------------------------------------------------------------------------------------GTGCAA----------------CAG-----------TCCACGGAATACGGAATCCTCGAG----------GAGC--------CGGCCTTCCAA-------
droSim2 3l:1419335-1419399 - GCGCGAGATCAGCGACATGCCGGCCACCAAAAGAACGCGCTCCGACTCGGGTGAGTTTCCCA--GCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_2:1535439-1535710 - GCGCGAGATCAGCGACATGCCGGCCACCAAAAGAACGCGCTCCGACTCGGGTGAGTTTCCCA--GCTG-TT-CGTCTATAA----ATAACTAT--GTATGATGGA-------------------------------------ATGATAGTGCCCCG---GCGATC---AGCACATCGCC-------CCC---------------------------------------------------------------------------------------------------------------------------------------------------AAA-----------------------------------AAC-A-----TGTTGTGTGTGTCTG----TCAATGAAT------GAGCTTGGCACGTACAA-ACATACACCTACATATGTGGCACG--------TAGGTTTCAATC-----------G-------ACA----------------------------------------------------------------------------------------------------------------------------GTGCAA----------------CAG-----------TCCACGGAATACGGAGTCCTCGAG----------GAGC--------CGGCCTTCCAAATTGTAT
droYak3 3L:1458382-1458626 - GCGCGAGATCAGCGACATGCCGGCCACCAAAAGATCGCGCTCCGACTCGGGTGAGTTTCCCA--GCTG-TC-CGTCTATAA----ATAGCTAT--GTATGATGGA-------------------------------------ATGATATTGCCGTG---GCGAAC---AGCACATCGCCACAAACACCC---------------------------------------------------------------------------------------------------------------------------------------------------AAAA----------------------------------AAC-A--TATTGTTGTGTATGTCTG----AG----AAT------GAGCTTG------------------------------GCACC--------TAGGTTTCAATC-----------G-------AGA----------------------------------------------------------------------------------------------------------------------------GTGCAACCA--------------AA-----------ACCACGA--TACGGAATCCACGAG----------GAGC--------CGGCCTTCCAAA-----T
droEre2 scaffold_4784:1485634-1485885 - GCGCGAGATCAGCGATATGCCGGCCACAAAAAGATCGCGCTCCGACTCGGGTGAGTTTCCCA--GCTG-TC-CGTCTATAA----ATAACTAT--GTATGATGGA-------------------------------------ATGATATTGCCGTG---GCGATC---AGCACATCGCC-------CCC---------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAAAAAAAAAA-------------AAAAAAAAACAA-----TGTTGTGTAGGTCTG----AA----AAT------GAGCTTG------------------------------GCACG--------TAGGTTTCAATC-----------G-------ACA----------------------------------------------------------------------------------------------------------------------------GTGCAACC---------------AA-----------TCCACGA--TACGGAATCCACGAG----------GAGC--------CGGCCTTCC---------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GCGCGATATCGGCGAGATGCCAGTCACAAAGCGTTCACGCTCGGACTCGGGTAAGTGTTTCG--TCTTGTTACG-------------------------GGCGGGGTGG------GAGAAGGGGTCAACTTGTTTATATGCATA-----------------------------------------------------------------------------AGTATGTATCTCCATAGA---------GTATATATATATTTA----------TATGC---------------------------------------GT-------AAGTTCACATAAAA--------------------------------------------------------------------CAAA------AAG---------------AGAAATA--AATATATATACAATG--------TAGGTT--AATG------------AAAC-------------------------------------------------------------------------------------------------------------------------------GCC-----------------------AGGCCACAACAAACCTAACA--AAAGGAAA------------------------ATATAT-----A------TATATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................AAAGCGTTCACGCTCGGACTCGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000002
..............AGATGCCAGTCACAAAGCGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
........................................................................CG-------------------------GGCGGGGTGG------GAGAAGGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
........................................................................CG-------------------------GGCGGGGTGG------GAGAAGGGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACAATG--------TAGGTT--AATG------------A.........................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
....GATATCGGCGAGATGCCAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000010000000000000000000000000000000000000000000000000000
GCGCGATATCGGCGAGATGCCAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000100000000000000000000000000000000000000000000000000000
...............................................CGGGTAAGTGTTTCG--TCTTGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
...............GATGCCAGTCACAAAGCGTTCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATG--------TAGGTT--AATG------------AAAC-------------------------------------------------------------------------------------------------------------------------------GCC-----------------------.............................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
..........................CAAAGCGTTCACGCTCGGACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
......................................................................................................GGGGTGG------GAGAAGGGGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501000000000000000010000000000000000000000000000000000000000000000
droMoj3
GCGCGATATCGGCGAAATGCCAGCCACAAAGCGTTCGCGCTCAGACTCGGGTAAGTGTTTCG--TCTG-AT-CGT-------------------------------------------------------------------------------------GGATGCACAA--AATTCGT-------ATTAAGCATAT-----------------------AAGTATATAT--CAATTGA---------GTATATATATATAAATATATATTTATGTAC---------------------------------------GT-------AAGTTT--------------------------------------------------------------------------ATCAAA------GAGCAAGATAAATA-----TATACA--TA---------------TATATGTAGGTA--AATG------------AAAC-------------------------------------------------------------------------------------------------------------------------------GCAAGGCAA----------------CAA----------ATCAAACA--AAAGGAATATATG------------------------T-----A------TATACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................TCTG-AT-CGT-------------------------------------------------------------------------------------GGATGCACAA--AA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100
..................................................................................................................................................................................................................................................................................GTAC---------------------------------------GT-------AAGTTT--------------------------------------------------------------------------ATCAAA------GAGC................................................................................................................................................................................................................................................................................................................2211.001000001
.......ATCGGCGAAATGCCAGCCACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
droGri2
GCGCGAAATCGGCGAAATGCCAGTCACAAAGAGGTCGCGTTCTGACTCGGGTAAGTGTCTTC--GCTA-TT-C-TCGCGAA----TTGCTTAT--GTACTATGTA-------------------------------------TAAGTA--TATGTG---TTTATC---TGCATAT---------------------------------------------------------------------------ATATATACATTTATATACATGTATGTAT--------GTATG-------------------------------TAGTGAGTTCATTCAAAAACAAAAGTAATACA-------------AACAAA-----ATATATGTA---------------------------------------------------------------------TGTA--------TAGGTT--AAAG------------AATC----------CACAA----------------------------------------------------------------------------------------------------------------GCAA-----------------------------------------------GGCATCAAAATG----------GAAA---ATATCT-----A------TATATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GCGCGAAATCAATGATATGCCGGTGACAAAAAGATCGCGCTCCGATTCAGGTGAGTCTCATATCGATG-CT--TACATTAA--------------------------------------------------------------------------------------------TTGTTT-------AAATAAAATTTACAAAAACAAAACCCTCAAAATAATATATGTAT--ACCTTCTGTGTGCATTCGATATATACTTTTATATATATAAATGTATCTTTTTTTATATATATTATTAGTCTAAAACCATAAGTATGTATGTTG---G-------AATGA-------AAAAAAAAAAATGAATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTATTAAAATAATATATATATATATTTACTATATATC-CTATGTCTTTGTATATAAGTTCATTTGACA----AAAAAAAAAAAAACCAATC------------------AAACGA--TAGGAAAAAAAAAAG----------AAAC--------AAAACA-AA---------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................GACAAAAAGATCGCGCTCCGATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATATAAGTTCATTTGA..........................................................................................................2011.00101000
...........ATGATATGCCGGTGACAAAAAGATCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
......AATCAATGATATGCCGGTGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
.............GATATGCCGGTGACAAAAAGATCGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
dp5
GCGCGAAATTACGGAGATGCCAGCCACAAAGCGAACGCGCTCCGACTCGGGTAAGTGTCTTG--TCCG-G-----C-------------------------------------------------------------------------------A---TGGATCTACAACAGATCCAC-------AACAGAGATAT-----------------------ATATATGTAT--GCCTTCT--------CCTATGTATATGTATACGTACACGTATGTATTATATTCAGCATG-------------------------------TACT-------------------------------------------------------------------------------------------------------------------------------------------ATGTTAGAA--ATGG------------AAACAAA-----TCAA----------ATCA----------AAGCAAAGCAAAGAAAGCGCCCCCCTCCCCCTAAGGCATATAGGCATATGCTCTCTCT--CTGTGTGTGTGTATGTACTCT------------------------------------------------------------------------------------------------------------TATATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................GAACGCGCTCCGACTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020200000000
..............................GCGAACGCGCTCCGACTCGGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...............................CGAACGCGCTCCGACTCGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.................TGCCAGCCACAAAGCGAACGCGCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
................ATGCCAGCCACAAAGCGAACGCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..........................................................................................................................................................................................................................................................................ACACGTATGTATTATATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCT--CTGTGTGTGTGTAT........................................................................................................................2230.3310000100000
droPer2
GCGCGAAATTACGGAGATGCCAGCCACAAAGCGAACGCGCTCCGACTCGGGTAAGTGTCTTG--TCCG-G-----C-------------------------------------------------------------------------------A---TGGATCTACAACAGATCCAC-------AACAGAGATAT-----------------------ATATATGTAT--GCCTTCT--------CCTATGTATATGTATACGTACACGTATGTATTATATTCAGCATG-------------------------------TACT-------------------------------------------------------------------------------------------------------------------------------------------ATGTTAGAA--ATGG------------AAACAAA-----TCAAATCAAATCAAATCA----------AAGCAAAGCAAAGCAAGCGCCCCCCTCCCCCTAAGGCATATAGGCATATGCTCTCTCTCTCTGTGTGTGTGTATGTACTCT---------------------------------------------------------------------------------------------TAT-----A------TATACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCGCCCCCCTCCCCCTAAGG..............................................................................................................................................................2311.001001000
droAna3
GCGGGAGATAAGCGAAGTCCCAACC---AAGAGATCACGCTCCGACTCGGGTGAGTTTCAAC--TCCG-TTCCGTCCCTCAGACACTAACCATACATATGGTGGGGGAGCTCTTTAACT-------------------------------AAAGGA---GGGCTC------ACCTCGTTACAAGTTA-C---------------------------------------------------------------------------------------------------------------------------------------------------AAAA----------AAAAAATAAAGAATAAGTACAAAAAACAATGAATGAATGTGTATGTATGTGTAAG----AATCTTAAGAAACTTG------------------------------GCACA--TGTATGTAGGTTTTAATC---AAATAATCAAAAAAAAACA-ATCAACAAA------ATCCACGATC-----------------------------------------------------------------------------------------------------------------------------------------------AGC-AGAGCAGCAAG----------GAGC--------CCAGCTAC------ATAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................GATCACGCTCCGACTCGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...............AGTCCCAACC---AAGAGATCACGCTCCGACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
..........................................................................................CATACATATGGTGGGGGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAG----------GAGC--------CCAGCTAC------AT..1920.501100000
droBip1
GCGGGAGATAAGCGAAGTTCCGACC---AAGAGATCACGCTCCGACTCGGGTGAGTTTCAAA--TCCG-TTCCGACCTTCAGACACAAACCAT--ATATGGCGGGGGAGCTCCTTGAAC------------------------------------A---AAGC------TCACCTCGAC-------ACC---------------------------------------------------------------------------------------------------------------------------------------------------AAAGA-------AACAAG--------------------AACAATGAATGAATGTGTACGTCTG----AG----AAT------CAACTTG------------------------------GCACATATCCATGTAGGTT--AATAATAATATATTCA-------ACA-ATCAACAAA------GTCCACGATCAGCAGAGCA-------------------------------------------------------------------------------------------------------------------------------------------AAGCAGCAAG----------GAGC--------CCGGCT------------SizeHit CountTotal NormTotal
No Reads
droKik1
GCGCGAGATCAGCGACATGCCGGCCACCAAGAGATCGCGCTCCGACTCTGGTAAGTTTCCCA--TCTG-TT-CGTCTATAA----ATAACTAA--GTATGATGGA-------------------------------------ATGATA--ACCGAGGAGGCGGT----------------------CCC---------------------------------------------------------------------------------------------------------------------------------------------------AAA-----------------------------------AAC-A-----TGTTCAGTGTGT----------------------------G------------------------------GTTAA--------TAGGTC--AATC-----------A-------ACA-ATCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------CAA--CATCAAGTCCCCGAGGAGCCGTAAGGAGC--------CGGCT----AA-------SizeHit CountTotal NormTotal
No Reads
droFic1
GCGAGAGATCAGCGATATGCCGGTCACGAAAAGATCGCGCTCCGACTCGGGTGAGTTTCACA--GCTG-TC-CGTCTATAA----ATAACTAT--GTATGATGGA-------------------------------------ATGATT--ACCGTG---GCGATC---AGCACATCGCC-------CCC---------------------------------------------------------------------------------------------------------------------------------------------------AAAG----------------------------------AAC-A-----TGTTGTGTATGTCTG----AG----AAT------GAGCTTG------------------------------GCACA--------TAGGTT--AAGC-----------A-------GCAAATCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------CA---------------AAG----------GAGC--------CGGCC----AAA-----TSizeHit CountTotal NormTotal
No Reads
droEle1
GCGCGAAATCAGCGACATGCCGGCCACCAAAAGATCGCGCTCCGACTCGGGTGAGTTTCCCA--GCTG-TC-CGTCTATAA----ATAACTAT--GTATGATGGA-------------------------------------ATGATA--ACCGTG---GCGATCGGCAGCACATCGCC-------CCC---------------------------------------------------------------------------------------------------------------------------------------------------AAAA-----------------------------------AA-A-----TGTTGTGTATGTCTG----AG----AAT------GAGCTTG------------------------------GCACG--------TAGGTT--AATC-----------A-------ACAAATCAA----------------------------------------------------------------------------------------------------------------------------------------------------------TCATCGGA-ATCGGAATCCACGAG----------GAG---------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GCGCGAGATCAGCGATATGCCGGCCACCAAAAGATCGCGCTCCGACTCGGGTGAGTTTCCCA--GCTG-TC-CGTCTATAA----ATAACTAT--GTATGATGGA-------------------------------------ATGATA--ACCGTG---GCGATC---AGTACATCGCT-------CCC---------------------------------------------------------------------------------------------------------------------------------------------------AAA-----------------------------------AAC-A-----TTTTGTGTATGTCTG----AA----AAT------AAGCTTG------------------------------GCACA--------TAGGTT--AATC-----------A-------ACAAATCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGAATCCACGAG----------GAGC--------CGGCA----AAA-----TSizeHit CountTotal NormTotal
No Reads
droBia1
GCGCGAGATCAGCGATATGCCGGCCACCAAAAGATCGCGCTCCGACTCGGGTGAGTTTCCCA--GCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GCGCGAGATCAGCGATATGCCGGCCACCAAAAGATCGCGCTCCGACTCGGGTGAGTTTCCCA--GCTG-TC-CGTCTATAA----ATAGCTAT--GTATGATGGA-------------------------------------ATGATA--ACCGTG---GCGATC---AGCACATCGCC-------TCA---------------------------------------------------------------------------------------------------------------------------------------------------AAAA-------------AAATCA---------------AAC-A-----TGTTGTGTATGTCTG----AG----AAT------GAGCTTG------------------------------GCACA--------TAGGTT-CAATC-----------A-------AT------------------------------------------------------------------------------------------------------------------------GA---GAGCAACCAAAAACCAATCCAACAG-----------TCCACGA--AACGGAATCCACGAG----------GAGGAATCCCCACGGCCTT-----------SizeHit CountTotal NormTotal
No Reads
droEug1
GCGCGAGATCAGCGATATGCCGACCACCAAGAGATCGCGCTCCGACTCCGGTGAGTTTCCCA--GATT-TT-CGTCTATAA----ATAACTAT--GTATAGAGGA-------------------------------------ATGATA--ACCGTA---GCGATC---AGCACATCGCT-------CCC---------------------------------------------------------------------------------------------------------------------------------------------------AAAA----------------------------------AAA-A----TTGTTGTGTATGTCTA----AAA---AAG------GAGCTTG------------------------------GCACA--------TAGGTT--AATC-----------A-------ACA----------------------------------------------------------------------------------------------------------------------------AAGCAA----------------CAA-----------TCTACGA--AACGGAATCCACAAG----------GAGC--------CGGCCTTCC---------SizeHit CountTotal NormTotal
No Reads
dm3
GCGCGAGATCAGCGACATGCCGGCCACCAAAAGAACGCGTTCCGATTCGGGTGAGTTTCCCA--GCTG-TT-TGTCTATAA----ATAACTAT--GTATGATGGA-------------------------------------ATGATATTGCCGCG---GCGATC---AGCACATCGCC-------CCC---------------------------------------------------------------------------------------------------------------------------------------------------AAA-----------------------------------AAC-A-----TGTTGTGTGTGTCTG----GCAATGAAT------GAGCTTGACACTTACAATACATACA--TACATATGTGGCACG--------TAGGTTTCAATC-----------G-------ACA----------------------------------------------------------------------------------------------------------------------------GTGCAA----------------CAG-----------TCCACGGAATACGGAATCCTCGAG----------GAGC--------CGGCCTTCCAA-------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................A-----------------------------------AAC-A-----TGTTGTGTGTGTCTG----G..................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGGCACG--------TAGGTTTCAATC-----------G-------AC.................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................AAA-----------------------------------AAC-A-----TGTTGTGTGTGTC.........................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................ATAA----ATAACTAT--GTATGATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................AGAACGCGTTCCGATTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ACCAAAAGAACGCGTTCCGATTCGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATCCTCGAG----------GAGC--------CGGCCTTCC.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..............ACATGCCGGCCACCAAAAGAACGCGTTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
........TCAGCGACATGCCGGCCACCAAAAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CGATTCGGGTGAGTTTCCCA--GCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTGTGTCTG----GCAATGAAT------GAG.................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTGTGTGTCTG----GCAATG.............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GCGAGATCAGCGACATGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GAACGCGTTCCGATTCGGGTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................GTCTG----GCAATGAAT------GAGCTTGA............................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTCTG----GCAATGAAT------GAGCTTGA............................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATACGGAATCCTCGAG----------GA............................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AAGAACGCGTTCCGATTCGGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACA--TACATATGTGGCACG--------..................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................A-----TGTTGTGTGTGTCTG----GCAATGAA...........................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACGGAATCCTCGAG----------GAGC--------..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------CAG-----------TCCACGGAATACGGAAT...............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................GA-------------------------------------ATGATATTGCCGCG---GCGATC---..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................A-----TGTTGTGTGTGTCTG----GC.................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCTG----GCAATGAAT------GAG.................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..............................................................................................................................................ATGATATTGCCGCG---GCGATC---A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CGATTCGGGTGAGTTTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGGCACG--------TAGGTTTCAA........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAATC-----------G-------ACA----------------------------------------------------------------------------------------------------------------------------GTGCAA----------------CAG-----------................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ACATGCCGGCCACCAAAAGAACGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CACCAAAAGAACGCGTTCCGATTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................ATGATGGA-------------------------------------ATGATATTGCCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTCTG----GCAATGAAT------GAGC................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TACA--TACATATGTGGCACG--------TAGGT.............................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................TGAGTTTCCCA--GCTG-TT-TGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................AACTAT--GTATGATGGA-------------------------------------ATGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
GCGCGAGATCAGCGACATGCCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATC-----------G-------ACA----------------------------------------------------------------------------------------------------------------------------GTGCAA----------------C.............................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...CGAGATCAGCGACATGCCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TGCCGGCCACCAAAAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACATACA--TACATATGT................................................................................................................................................................................................................................................................................19180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
GCGCGAGATCAGCGACATGCCGGCCACCAAAAGAACGCGCTCCGACTCGGGTGAGTTTCCCA--GCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....AGATCAGCGACATGCCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
droSec2
GCGCGAGATCAGCGACATGCCGGCCACCAAAAGAACGCGCTCCGACTCGGGTGAGTTTCCCA--GCTG-TT-CGTCTATAA----ATAACTAT--GTATGATGGA-------------------------------------ATGATAGTGCCCCG---GCGATC---AGCACATCGCC-------CCC---------------------------------------------------------------------------------------------------------------------------------------------------AAA-----------------------------------AAC-A-----TGTTGTGTGTGTCTG----TCAATGAAT------GAGCTTGGCACGTACAA-ACATACACCTACATATGTGGCACG--------TAGGTTTCAATC-----------G-------ACA----------------------------------------------------------------------------------------------------------------------------GTGCAA----------------CAG-----------TCCACGGAATACGGAGTCCTCGAG----------GAGC--------CGGCCTTCCAAATTGTATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACCTACATATGTGGCACG--------T.................................................................................................................................................................................................................................................................2312.0020020
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGGCACG--------TAGGTTTCA.........................................................................................................................................................................................................................................................2111.0010001
............................AAAAGAACGCGCTCCGACTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCCTCGAG----------GAGC--------CGGCCTTC..........2311.0010010
droYak3
GCGCGAGATCAGCGACATGCCGGCCACCAAAAGATCGCGCTCCGACTCGGGTGAGTTTCCCA--GCTG-TC-CGTCTATAA----ATAGCTAT--GTATGATGGA-------------------------------------ATGATATTGCCGTG---GCGAAC---AGCACATCGCCACAAACACCC---------------------------------------------------------------------------------------------------------------------------------------------------AAAA----------------------------------AAC-A--TATTGTTGTGTATGTCTG----AG----AAT------GAGCTTG------------------------------GCACC--------TAGGTTTCAATC-----------G-------AGA----------------------------------------------------------------------------------------------------------------------------GTGCAACCA--------------AA-----------ACCACGA--TACGGAATCCACGAG----------GAGC--------CGGCCTTCCAAA-----TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................GGCCACCAAAAGATCGCGCTCCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24112.0012000000000012
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------ACCACGA--TACGGAATCCAC...........................................2011.00100000010000
droEre2
GCGCGAGATCAGCGATATGCCGGCCACAAAAAGATCGCGCTCCGACTCGGGTGAGTTTCCCA--GCTG-TC-CGTCTATAA----ATAACTAT--GTATGATGGA-------------------------------------ATGATATTGCCGTG---GCGATC---AGCACATCGCC-------CCC---------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAAAAAAAAAA-------------AAAAAAAAACAA-----TGTTGTGTAGGTCTG----AA----AAT------GAGCTTG------------------------------GCACG--------TAGGTTTCAATC-----------G-------ACA----------------------------------------------------------------------------------------------------------------------------GTGCAACC---------------AA-----------TCCACGA--TACGGAATCCACGAG----------GAGC--------CGGCCTTCC---------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATC-----------G-------ACA----------------------------------------------------------------------------------------------------------------------------GTGCAACC---------------AA-----------TCCACG..........................................................2912.0022000000
.............................AAAGATCGCGCTCCGACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA--TACGGAATCCACGAG----------GAGC--------..................2111.0010000010
..................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA-------------AAAAAAAAAC.............................................................................................................................................................................................................................................................................................................................................................26200.0511000000

Generated: 05/16/2015 at 09:20 PM