ID:

dvi_18160

 Coordinate:

scaffold_13049:3231626-3231776 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ12477-cds]; exon [dvir_GLEANR_12443:5]; intron [Dvir\GJ12477-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCAACGTTCAGGCCGAGGATCAGTCACGCGATTGTATCGCAACCCAAAAGGTAAAGTAAATGCAATACATTTGCATATATGCCAAATTTGTGCGCGCGTTCTCTTTGTATTGTTTGTTGTTGTTCTTATATGTAGCTGTTGTTGTTATTGCTATTGCTAGTTAGAATTCTGCATGCCTTCTACAGTATTGTCAACTTTTTCTTTGAGCCTAATAACCTAACCCTCGACCTGTTATTCCTTCAAAATTTGAA
**************************************************(((((((((..((((((((.(((((((((.(((((((..(((((...........))))).))))).....))...))))))))).)).))))))..))))).)))).((((.((...(((...........))).....)))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060664
9_males_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 M047
female body
 V053
head
 V047
embryo
 SRR060656
9x160_ovaries_total
 SRR060662
9x160_0-2h_embryos_total
........................CACGCGATTGTATCGCAACCCAAA........................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
.............CGAGGATCAGTCACGCGATT.......................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................................TAACCTAACCCTCGACCTGTTATTCCT............ 27 0 1 1.00 1 0 0 1 0 0 0 0
.....GTTCAGGCCGAGGATCAGTCACGC.............................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0
...................TAAGGCACGCGGTTGTATCG.................................................................................................................................................................................................................... 20 3 1 1.00 1 0 0 0 1 0 0 0
..................ATCAGTCACGCGATTGTAT...................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
........CAGTCCGACGATCAGTCGCG............................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 1 0 0 0 0
..............................................................................................CGGGTCATCTTTGTATTGTT......................................................................................................................................... 20 3 9 0.11 1 0 0 0 1 0 0 0
...............................................................................................................................................GTTACTACTATTGCTAGT.......................................................................................... 18 2 10 0.10 1 0 0 0 0 1 0 0
........CAGTCCGACGATCAGTCA................................................................................................................................................................................................................................. 18 2 20 0.10 2 0 0 2 0 0 0 0
...................................................................................................TCTATTTGTATTGTTAGTTGGT.................................................................................................................................. 22 3 13 0.08 1 0 0 1 0 0 0 0
........CAGTCCGACGATCAGCCACG............................................................................................................................................................................................................................... 20 3 15 0.07 1 0 0 1 0 0 0 0
.....................................................................................................TTTTTGTATTGTTTGTTGT................................................................................................................................... 19 1 19 0.05 1 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................................TTAGTCCCTCGAAATTTGA. 19 3 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

GGTTGCAAGTCCGGCTCCTAGTCAGTGCGCTAACATAGCGTTGGGTTTTCCATTTCATTTACGTTATGTAAACGTATATACGGTTTAAACACGCGCGCAAGAGAAACATAACAAACAACAACAAGAATATACATCGACAACAACAATAACGATAACGATCAATCTTAAGACGTACGGAAGATGTCATAACAGTTGAAAAAGAAACTCGGATTATTGGATTGGGAGCTGGACAATAAGGAAGTTTTAAACTT
**************************************************(((((((((..((((((((.(((((((((.(((((((..(((((...........))))).))))).....))...))))))))).)).))))))..))))).)))).((((.((...(((...........))).....)))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060666
160_males_carcasses_total
 SRR060663
160_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 M027
male body		 SRR060667
160_females_carcasses_total
 M047
female body
 SRR060671
9x160_males_carcasses_total
 SRR060664
9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 M028
head
 SRR060685
9xArg_0-2h_embryos_total
 SRR060659
Argentina_testes_total
 V047
embryo
 M061
embryo
 V053
head
 SRR060657
140_testes_total
 GSM1528803
follicle cells		 SRR060675
140x9_ovaries_total
 SRR060658
140_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060678
9x140_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060683
160_testes_total
 SRR060670
9_testes_total
 SRR060674
9x140_ovaries_total
 SRR060673
9_ovaries_total
 SRR1106728
larvae
.................................................................................................................................................................................................................................CTGGACAATAACGGAGTTTG...... 20 3 5 127.80 639 234 75 47 34 33 24 19 23 13 18 7 12 10 13 7 16 2 6 5 10 4 1 8 3 4 5 4 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................TGGACAATAACGGAGTTTGAA.... 21 3 5 126.20 631 335 64 17 28 23 26 23 11 14 21 7 12 6 1 6 5 4 4 4 1 3 4 1 1 4 1 0 1 1 1 0 0 1 0 0 1 0 0
..................................................................................................................................................................................................................................TGGACAATAACGGAGTTTGA..... 20 3 10 105.10 1051 418 158 46 35 44 31 46 29 27 36 29 17 15 0 27 16 22 9 12 0 2 7 5 1 5 3 0 4 2 3 0 0 1 0 0 0 1 0
..................................................................................................................................................................................................................................TGGACAATAACGGAGTTTG...... 19 3 20 96.70 1934 694 219 94 79 131 122 63 35 75 73 46 64 37 1 33 25 29 23 32 2 9 13 9 7 4 1 0 4 3 3 0 1 2 1 0 0 0 0
.................................................................................................................................................................................................................................CTGGACAATAACGGAGTTTGA..... 21 3 4 75.50 302 130 28 24 25 9 11 8 15 5 6 6 2 2 2 4 3 3 2 4 1 0 1 2 3 0 1 3 0 0 0 2 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTGGACAATAACGGAGTTTGAA.... 22 3 3 73.00 219 121 14 10 16 9 3 10 7 4 0 3 1 1 5 4 2 0 2 1 1 2 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTGGACAATAACGGAGTTT....... 19 2 4 49.50 198 88 8 19 12 8 12 3 8 3 3 5 0 3 10 1 6 1 3 0 1 1 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGGACAATAACGGAGTTT....... 18 2 8 44.00 352 21 42 40 21 33 58 7 16 26 12 11 9 8 0 7 6 7 6 2 2 4 4 1 0 1 2 0 2 0 1 0 2 0 1 0 0 0 0
.................................................................................................................................................................................................................................CTGGACAATAACGGAGTT........ 18 2 6 35.83 215 12 32 20 24 15 12 5 12 9 6 2 2 9 12 8 4 6 6 3 2 2 1 0 1 1 4 2 0 2 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................GCTGGACAATAACGGAGTTTGA..... 22 3 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTGGACAATAACGAAGTTTG...... 20 2 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGGACAATAACGGAGTTTT...... 19 2 2 1.50 3 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTGGACAATAACGTAGTTT....... 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTGGACAATAACGAAGTT........ 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GCTGGACAATAACGGAGTTT....... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGGACAATAACGAAGTTTGAAG... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGGACAATAACGAAGTTT....... 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGGACAATAACGAAGTTTGA..... 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGGACAATAACGGAGTTTGAAA... 22 3 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTGGACAATAACGGAGTTTT...... 20 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTGGACAATAACGGAGTTTTA..... 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTGGACAATAACGTAGTTTGA..... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTCTGGACAATAAGGGAGTTT....... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTGGACAATAAAGGAGTTTGA..... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTGGACAATAACGGAGTTTTAAG... 23 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGGACAATAAAGGAGTTT....... 18 2 6 0.33 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ACAATGAGGAAGTTTTAA.... 18 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TATGGAAGATGTCATTACAGG.......................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ACAAGTAAGTCGGATTATTG................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ACCATGAGGAAGTTTTAA.... 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................TGGACAATAAAGGAGTTTGAA.... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TCTGGACAATAATGGAGTTT....... 20 3 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GGACAATAACGGAGTTTGAAA... 21 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGGACAATAATGGAGTTTGA..... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTGGACAATAACGGAGTTG....... 19 3 20 0.10 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GAAAGAAACTCGGGTTAT..................................... 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................CAGTTGAAAAAGAAATTGGGT......................................... 21 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGGACAATAAAGGAGTTTGA..... 20 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TCTGGACAATAAGGA............ 15 1 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................CAGGAAGAAACATCGACAACA............................................................................................................. 21 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTGGGAGTTGTACAATCAG.............. 19 3 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTGGGAGCTTGTCAATGAG.............. 19 3 17 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTGGACAATAACGGAGATT....... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................CAGTTGAAAAAGAAATTG............................................ 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:3231576-3231826 - dvi_18160 CCAA------------------------------CGT-----------------------------TC-A---------------------------------GGC-CGA-GGATCAGTCACGCGATTGTATCGCAACCCAAAAGGTAAAG--------------------------------TAAATG---------C---------------AATACATTTGCATATA-----------TGCCAAATTTGTGCG---------CGCGTTCTCTTTGTATTGTTTGTTGTTGTTCTTATATGTAGCTGTTGT----T-------------------------G---TTATTGC----TATTGC--------------TAGTTAGAATT--------------------CTGCATGC---------CTTC--TACAG-TATTGTCAACTTTT---TCTTTG---------------------------AG--CCTAA--TAACCTAACCCTCGACCT-G-TTATTCCT---TCAAAAT----TTGAA
droMoj3 scaffold_6654:746256-746520 + CCAG------------------------------CGT-----------------------------CC-AAG---------------------------------C-TGA-GGATCAGTCACGCGATTGTATCGCAACCCAAAAGGTAGGCAGAAC------------CA--------------------------------------------AATACATTTGCATATA-----------TGCCAAATTTGTGCGCAGAGTCTGCGCGTTGTCCTCCTCTAGTATGT--TTGTT--CGTTTGTAGTTGTTGT----GT----------------------------ATGTCGT----TATTGC--------------TAGTTAGAATAC--------ATAG--T--AG-TGCATG---------CCTTC--TACAG-TATTGTCAACTTAC-----TTCG---------------------------AG--CCTAAA-AAACCTAACCCTCAACCT-A-TTATTCCTAACTCCAAAA----TTGTA
droWil2 scf2_1100000004540:382992-383289 + ACAA------------------------------GATTCA--------------CAAAAGTCGCATCAAACGTTCGA------GG---AACATCATCATCATCATCAGACGGCATCAG-GAGGCGATTGTATTAAAACTCAAAAGGTAAGG----------------------------------------------------------------AT-CATTTGCATATGCTT---AGTTATT-------TTTCCTTCGTTTT--TGTTTTCTTTTCTTTTTTGTTTTTTTTTTTTTTTTTTGTATTTTTCGT----G-------------------------G---CTATG----------AC--------TAAATTTGGTTACTGCC--------------------AT--ATGTTC------TTTCT--TATAGTTATTGTTGTTTTGT-----TTGATGTCTATTTATGCATGTGACTGCCTGCTG--CCTGCTTTTTCCT---------------------------CTAATC----TTAAA
dp5 XR_group3a:974015-974256 + TCGT------------------------------CG--------------------CACA----------------------------TC------------TCTC-A---GGATCAGCCACGCGATTGTCTTGCATCCCAAAAGGTAAGCGATGT------------CC----CCCGGACCCCTCCTC---------CCGCCTCCTCCT---CGAG-GATTTGCATATCGTTATGCTGTATGCTGAA-------------------------------------------------TGCATGTAGTT---GTTTGTGT----------------------------TTCT----------TGTTGT---------------ACGAGTACTCGTACGAGTAG--TT--GTTGCATGCCT-CC--TCCTTC--TACAG-TATTGTCAACTTTTGTTACTTCG---------------------------AATGC--CA-TGAACCTAACCC-------------------------------------
droPer2 scaffold_23:1003887-1004138 + TCGT------------------------------CG--------------------CACA----------------------------TC------------TCTC-A---GGATCAGCCACGCGATTGTCTTGCATCCCAAAAGGTAAGCGATGT------------CC----CCCGGACCCCTCCTC---------CCTCCTCCTCCT---CGAG-GATTTGCATATCGTTATGCTGTATGCTGAA-------------------------------------------------TGCATGTAGTT---GTTTGTGT----------------------------TTCT----------TGTTGTACGTAC-----GAGTACGAGTACTCGTACGAGTAG--TT--GTTGCATGCCT-CC--TCCTTC--TACAG-TATTGTCAACTTTTGTTACTTCG---------------------------AATGC--CA-TGAACCTAACCC-------------------------------------
droAna3 scaffold_13337:106319-106547 + CCCA------------------------------CGTCCCCA-GCCC-------AGGCCATCCCATCGCAAAAGGAG------CC---GT------------TGCC-GAC-TGATCAGCCTCGCGATTGTCTTGCACCACTAAAGGTAAGTCAATC-------------------------GGTAATTT---------TGTTTGTTGTCT---GCGT-GATTTGCAAATCC------------------------------------------------------------------AGTC-CTAGTTGTTGT----TTG----------------ACTGTAAGT--TT----------CTTGT--------------TTG-----------------------CTTAGTTGCATGCC------GTCTTT--CATAG-TACTGTCAACTTGT--------T---------------------------AG--CCTTGCTTATCCTAACCC-------------------------------------
droBip1 scf7180000395155:650928-651140 - CCCA------------------------------CGTCCCCA-GCCC-------GGGCCAGCCCATCGCAGAAGGAG------CC---AT------------TGCC-GAC-GGATCAGCCTCGCGATTGTCTTGCACCACAAAAGGTAAGTCAATC-------------------------GGTAGTTT---------TGTTAGCTGTCT---GCGT-GATTTGCAAATCC-------------------------------------------------------------------ATTCCTAGTTGTTGT----TTG----------------ACTTTGAGT--TA----------CTTGT--------------TAG-----------------------CTTAGTTGCATGCCTGCC--GTCTTT--CATAG-TACTGTCAACTTGT-------T---------------------------------------------------------------------------------------
droKik1 scf7180000297989:26436-26684 - C--------------------------------------------------------------------AAGCGGAGTCGGAGTC---TC------------TGTC-AGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGTCT-GGCCGCCGAATTTGAA---TC--CGAAGCCAAAT--------------------CC---AAAT-GATTTGCATATTC---CTCCGTACGT-----------------------------------------------------TGTATGTAGTTGCTGT----TTGTTTGTTTGTTTTTTTGACTTGTCGT---T-----GTTGCGATGT--------------TAG-----------------------CTTAGTTGCATGCCT------CCTCC--CACAG-TATTGTCAACTTTT-------TG----------------------------G--CCTGACCCCACCTAACCCCCAGC--------------------------------
droFic1 scf7180000454105:565385-565639 - GCCG-----------------------------------------------------------CATCCCAGGTGGAG------TC---TC------------CCTC-GGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGTCGTCC------------CA---TCC--CATGGCGGATG---------CCCC--TCGTTC---GAGT-GATTTGCATATTC------------------------------------------------------------------CGTATGTAGT-GCTGT----TTG----------------ACTTGTCGTT-CT-----GTTGAGTCGT--------------TAG------------------TCGTTCTTAGTTGCATGCCC-CC--GCCTTC--CGCAG-TACTGTCAACTTTC-------CG---------------------------AG--CCTGACCTAACCTAACCC-CAGCTCGA-CTAACCAGAGA-----AC----CCAAA
droEle1 scf7180000491249:556953-557183 - TCGC------------------------------------AA-TCC-------CAGCAAATCGCATCCCAAGCGGAG------TC---TC------------TGCC-AGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGTCATTC------------------------------------------CCCCTTTCGTCTGATGAAT-GATTTGCATATTC------------------------------------------------------------------TGTATGTAGTTACTGT----TTG----------------ACTTGTCGTTTTTGTTGT----TGTTGT--------------TAG-----------------------TTTAGTTGCATGCCC-CC--GCCTTC--CACAG-TATTGTCAACATTC-------TG---------------------------AG--CCTGACCTATCCTAACCC-------------------------------------
droRho1 scf7180000768314:9153-9385 + G-------------------------------------------------------CAAATCCCATCCAAAGCGGAG------TC---TC------------TGTC-AGC-GGATCAGCCACGCGATTGTATTGCACCTCAAAAGGTAAGTCATCC------------CA---T-------GGTGGATC---GGAT--CCCCTTGCGTTT---GAAT-GATTTGCATATTC------------------------------------------------------------------TGTATGTAGTTGATGT----TTG----------------ACTTGTCGTT-TT-----GT-----TGT--------------TAG-----------------------TTTAGTTGCATGCCC-CC--GCCTCC--CACAG-TATTGTCAACTTTC-------CG---------------------------AG--CCTGACCTATCCTAACCCCCAGCTCG-----------------------------
droBia1 scf7180000300910:518933-519213 - CCTGGACGAG---GAGTCCCAGTCGCATTCCCAT--TCGCCA-TCC-------CAGCACATCCCATCCCAAGCGCAG------TC---TC------------TGTC-AGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGTCATCC------------TCCCATGGTGGATGGTAGT-----------CCCCCTGCGTCT---GAAT-GATTTGCATATGC------------------------------------------------------------------TGTACGTAGTTACTGT----TTG----------------ACTTGTCGTT-TT-----GTTGTGTTGT--------------TAG-----------------------TTTAGTTGCATGCCC-CC--GCCTCC--CACAG-TATTGTCAACTTTC-------TG---------------------------AG--CCTGACCTATCCTAACCCCCAGC--------------------------------
droTak1 scf7180000415846:263551-263796 + CCAG-----------------------------------------------------------CTTCCCAAGCGGAG------TCTTCTC------------TGTC-AGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGTCATCT------------CA---TGGAGGATGCTAGATGATCCCATCCCCCGTTTCGTCT---GAAT-GATTTGCATATCC------------------------------------------------------------------TGTATGTAGTTACTGTTTGTTTG----------------ACTTGTCGTT-TT-----GTTGTGTTGT--------------TAG-----------------------TTTAGTTGCATGCCC-CCTTGCCTCCCACACAG-TATTGTCAACTTTC-------TG---------------------------AG--CC--GCCTAACCTGACC--------------------------------------
droEug1 scf7180000409184:474485-474734 - CCCA-----------------------TTCCCAG--TC-CCAGTCC-------CAGCCAGTCCCATCCCAAGCGGAG------TC---TC------------TCTC-AGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGTCATCC------------CA----------TGGTGGATC---------CCTCTGTCGCCT---GAAT-GATTTGCATTTTC------------------------------------------------------------------CGTATGTAGTTACTGT----TTG----------------ACTTGTCGTC-TT-----GTTGCGTTGT--------------TAG-----------------------TTTAGTTGCATGCCC-CC--GCCTTC--CACAG-TATTGTCAACTCTC-------CT---------------------------AG--CCTGACCTAGCCTAACCCCC-----------------------------------
dm3 chr3L:453927-454196 - CCAA------------------------TCCCAG----------TCGCGGTCACAGCAAGTCCCATCCCAAGCGAAG------TC---GC------------CGTC-AGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGCCATAC------------CACCACGATGGATGGTAGATG---------CCCCTTTCGTCT---GAAT-GATTTGCATATTC-------------CGTA-------------------------------------------------TGTATGTAGTTACTGTTTGTTTG----------------ACTTGTCGTT-CT-----GTTGTGTTCT--------------TAG-----------------------CTTAGTTGCATGCCC-CC--GCCTCA--CATAG-TATTGTCAACTTTC-------TG---------------------------AG--CCTGACCTATCCTAACCCCCAGC--------------------------------
droSim2 3l:417633-417907 - dsi_18227 CCTGGATGAGACC------------CAATCCCAG----------TCGCGGCCACAGCAAGTCCCATCCCAAGCGAAG------TC---GC------------CGTC-AGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGCCATAC------------CA---CCTTGGATGGTAGATG---------CCCCTTTCGTCT---GAAT-GATTTGCATATTC-------------CGTA-------------------------------------------------TGTATGTAGTTACTGT----TTG----------------ACTTGTCGTT-CT-----GTTGTGTTCT--------------TAG-----------------------CTTAGTTGCATGCCC-CC--GCCTAA--CATAG-TATTGTCAACTTTC-------TG---------------------------AG--CCTGACCTATCCTAACCCCCAGC--------------------------------
droSec2 scaffold_2:475997-476243 - CCA--------------------------------------------------CAGCAAGTCCCATCCCAAGCGAAG------TT---AC------------CGTC-AGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGCCATAC------------CA---CCTTGGATGGTAGATG---------CCCCTTTCGTCT---GAAT-GATTTGCATATTT-------------CGTA-------------------------------------------------TGTATGTAGTTACTGT----TTG----------------ACTTGTCGTT-CT-----GTTGTGTTCT--------------TAG-----------------------CTTAGTTGCATGCCC-CC--GCCTCA--CATAG-TATTGTCAACTTTC-------TG---------------------------AG--CCTGACCTATCCTAACCCCCAGC--------------------------------
droYak3 3L:430282-430571 - CCTGGATGAGACC---------------------CGT------TCC-------CAGCCAGTCACATCCCAAGCGAAG------TC---GC------------CGTC-AGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGCCATAC------------GA---CGGTGGATGGCAGATG---------CCCCTTTCGTCT---GAAT-GATTTGCATATTC-------------CGAA-------------------------------------------------TGTATGTAGTTACTGT----TTG----------------ACTTGTCGTT-CT-----GTTGTGTTCC--------------TAG-----------------------CTAAGTTGCATGCCC-CC--GCCTCA--CATAG-TATTGTCAACTTTC-------TG---------------------------AG--CCTGACCTATCCTAACCCCCAGCTCAAGCTAACCGAAGA-----ACCTACATGAA
droEre2 scaffold_4784:451882-452159 - CCTGGACGAGATCCA------------CTCCCAG--TC-CCA-GTCCCGGTCACAGCAAGTCCCATCCCAAGCGAAG------TC---GC------------CGTC-AGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGCCATAC------------CA---CGTTGGATGGTAGATG---------CCCCTTTCGTCT---GAAT-GATTTGCATATGT-------------CGTA-------------------------------------------------TGTATGTAGTTACTGT----TTG----------------ACTTGTCGTT-CT-----GTTGTGTTCC--------------TAG-----------------------CTTAGTTGCATGCCC-CT--GCCTCC--CTTAG-TATTGTCAACTTTC-------TC---------------------------AG--CCTGACCTATCCTAACCCCC-----------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CCAA------------------------------CGT-----------------------------TC-A---------------------------------GGC-CGA-GGATCAGTCACGCGATTGTATCGCAACCCAAAAGGTAAAG--------------------------------TAAATG---------C---------------AATACATTTGCATATA-----------TGCCAAATTTGTGCG---------CGCGTTCTCTTTGTATTGTTTGTTGTTGTTCTTATATGTAGCTGTTGT----T-------------------------G---TTATTGC----TATTGC--------------TAGTTAGAATT--------------------CTGCATGC---------CTTC--TACAG-TATTGTCAACTTTT---TCTTTG---------------------------AG--CCTAA--TAACCTAACCCTCGACCT-G-TTATTCCT---TCAAAAT----TTGAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................CACGCGATTGTATCGCAACCCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................CGA-GGATCAGTCACGCGATT...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACCTAACCCTCGACCT-G-TTATTCCT---................2711.001001000000000000000000000000000000000000000000000000000000000000
...................................GT-----------------------------TC-A---------------------------------GGC-CGA-GGATCAGTCACGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................ATCAGTCACGCGATTGTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
droMoj3
CCAG------------------------------CGT-----------------------------CC-AAG---------------------------------C-TGA-GGATCAGTCACGCGATTGTATCGCAACCCAAAAGGTAGGCAGAAC------------CA--------------------------------------------AATACATTTGCATATA-----------TGCCAAATTTGTGCGCAGAGTCTGCGCGTTGTCCTCCTCTAGTATGT--TTGTT--CGTTTGTAGTTGTTGT----GT----------------------------ATGTCGT----TATTGC--------------TAGTTAGAATAC--------ATAG--T--AG-TGCATG---------CCTTC--TACAG-TATTGTCAACTTAC-----TTCG---------------------------AG--CCTAAA-AAACCTAACCCTCAACCT-A-TTATTCCTAACTCCAAAA----TTGTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................ACGCGATTGTATCGCAACCCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droWil2
ACAA------------------------------GATTCA--------------CAAAAGTCGCATCAAACGTTCGA------GG---AACATCATCATCATCATCAGACGGCATCAG-GAGGCGATTGTATTAAAACTCAAAAGGTAAGG----------------------------------------------------------------AT-CATTTGCATATGCTT---AGTTATT-------TTTCCTTCGTTTT--TGTTTTCTTTTCTTTTTTGTTTTTTTTTTTTTTTTTTGTATTTTTCGT----G-------------------------G---CTATG----------AC--------TAAATTTGGTTACTGCC--------------------AT--ATGTTC------TTTCT--TATAGTTATTGTTGTTTTGT-----TTGATGTCTATTTATGCATGTGACTGCCTGCTG--CCTGCTTTTTCCT---------------------------CTAATC----TTAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................ATCAGACGGCATCAG-GAGGCGATT...................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
...................................................................................................................CAG-GAGGCGATTGTATTACC...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
.....................................................................................................................G-GAGGCGATTGTATTAAAACTC.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000
ACAA------------------------------GATTCA--------------CAAAAGTCGCATCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGACTGCCTGCTG--CCT....................................................1911.00110000
......................................................................................................CATCAGACGGCATCAG-GAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
dp5
TCGT------------------------------CG--------------------CACA----------------------------TC------------TCTC-A---GGATCAGCCACGCGATTGTCTTGCATCCCAAAAGGTAAGCGATGT------------CC----CCCGGACCCCTCCTC---------CCGCCTCCTCCT---CGAG-GATTTGCATATCGTTATGCTGTATGCTGAA-------------------------------------------------TGCATGTAGTT---GTTTGTGT----------------------------TTCT----------TGTTGT---------------ACGAGTACTCGTACGAGTAG--TT--GTTGCATGCCT-CC--TCCTTC--TACAG-TATTGTCAACTTTTGTTACTTCG---------------------------AATGC--CA-TGAACCTAACCC-------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................AGCCACGCGATTGTCTTGC............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
TCGT------------------------------CG--------------------CACA----------------------------TC------------TCTC-A---GGATCAGCCACGCGATTGTCTTGCATCCCAAAAGGTAAGCGATGT------------CC----CCCGGACCCCTCCTC---------CCTCCTCCTCCT---CGAG-GATTTGCATATCGTTATGCTGTATGCTGAA-------------------------------------------------TGCATGTAGTT---GTTTGTGT----------------------------TTCT----------TGTTGTACGTAC-----GAGTACGAGTACTCGTACGAGTAG--TT--GTTGCATGCCT-CC--TCCTTC--TACAG-TATTGTCAACTTTTGTTACTTCG---------------------------AATGC--CA-TGAACCTAACCC-------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................CAGCCACGCGATTGTCTTGC............................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
........................................................................................TC------------TCTC-A---GGATCAGCCACGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.........................................................................................C------------TCTC-A---GGATCAGCCACGCGATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.........................................................................................................C-A---GGATCAGCCACGCGATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droAna3
CCCA------------------------------CGTCCCCA-GCCC-------AGGCCATCCCATCGCAAAAGGAG------CC---GT------------TGCC-GAC-TGATCAGCCTCGCGATTGTCTTGCACCACTAAAGGTAAGTCAATC-------------------------GGTAATTT---------TGTTTGTTGTCT---GCGT-GATTTGCAAATCC------------------------------------------------------------------AGTC-CTAGTTGTTGT----TTG----------------ACTGTAAGT--TT----------CTTGT--------------TTG-----------------------CTTAGTTGCATGCC------GTCTTT--CATAG-TACTGTCAACTTGT--------T---------------------------AG--CCTTGCTTATCCTAACCC-------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................TGATCAGCCTCGCGATTGTCTTGCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................2712.002020000
..................................CGTCCCCA-GCCC-------AGGCCATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
...........................................................................AG------CC---GT------------TGCC-GAC-TGATCAGCCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..............................................C-------AGGCCATCCCATCGCAAAAGGAG------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
................................................................................................................GATCAGCCTCGCGATTGTCTTGCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
..........................................................................GAG------CC---GT------------TGCC-GAC-TGATCAGCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.........................................................................................T------------TGCC-GAC-TGATCAGCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.........................................................................................................................CGCGATTGTCTTGCACCACT......................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTT--CATAG-TACTGTCAACTTGT--------T---------------------------AG--CC.....................................................2911.001100000
................................................................................................................GATCAGCCTCGCGATTGTCTTGCACCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..................................................................CGCAAAAGGAG------CC---GT------------TGCC-GAC-TGATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.....................................................................................................................................................................................GGTAATTT---------TGTTTGTTGTC..................................................................................................................................................................................................................................................................................................................................................1911.001000010
........................................................GCCATCCCATCGCAAAAGGAG------CC---GT------------TGCC-........................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAG-TACTGTCAACTTGT--------T---------------------------...........................................................1911.001010000
............................................................................................................AC-TGATCAGCCTCGCGATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...................................................................................CC---GT------------TGCC-GAC-TGATCAGCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
droBip1
CCCA------------------------------CGTCCCCA-GCCC-------GGGCCAGCCCATCGCAGAAGGAG------CC---AT------------TGCC-GAC-GGATCAGCCTCGCGATTGTCTTGCACCACAAAAGGTAAGTCAATC-------------------------GGTAGTTT---------TGTTAGCTGTCT---GCGT-GATTTGCAAATCC-------------------------------------------------------------------ATTCCTAGTTGTTGT----TTG----------------ACTTTGAGT--TA----------CTTGT--------------TAG-----------------------CTTAGTTGCATGCCTGCC--GTCTTT--CATAG-TACTGTCAACTTGT-------T---------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
C--------------------------------------------------------------------AAGCGGAGTCGGAGTC---TC------------TGTC-AGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGTCT-GGCCGCCGAATTTGAA---TC--CGAAGCCAAAT--------------------CC---AAAT-GATTTGCATATTC---CTCCGTACGT-----------------------------------------------------TGTATGTAGTTGCTGT----TTGTTTGTTTGTTTTTTTGACTTGTCGT---T-----GTTGCGATGT--------------TAG-----------------------CTTAGTTGCATGCCT------CCTCC--CACAG-TATTGTCAACTTTT-------TG----------------------------G--CCTGACCCCACCTAACCCCCAGC--------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GCCG-----------------------------------------------------------CATCCCAGGTGGAG------TC---TC------------CCTC-GGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGTCGTCC------------CA---TCC--CATGGCGGATG---------CCCC--TCGTTC---GAGT-GATTTGCATATTC------------------------------------------------------------------CGTATGTAGT-GCTGT----TTG----------------ACTTGTCGTT-CT-----GTTGAGTCGT--------------TAG------------------TCGTTCTTAGTTGCATGCCC-CC--GCCTTC--CGCAG-TACTGTCAACTTTC-------CG---------------------------AG--CCTGACCTAACCTAACCC-CAGCTCGA-CTAACCAGAGA-----AC----CCAAASizeHit CountTotal NormTotal
No Reads
droEle1
TCGC------------------------------------AA-TCC-------CAGCAAATCGCATCCCAAGCGGAG------TC---TC------------TGCC-AGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGTCATTC------------------------------------------CCCCTTTCGTCTGATGAAT-GATTTGCATATTC------------------------------------------------------------------TGTATGTAGTTACTGT----TTG----------------ACTTGTCGTTTTTGTTGT----TGTTGT--------------TAG-----------------------TTTAGTTGCATGCCC-CC--GCCTTC--CACAG-TATTGTCAACATTC-------TG---------------------------AG--CCTGACCTATCCTAACCC-------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
G-------------------------------------------------------CAAATCCCATCCAAAGCGGAG------TC---TC------------TGTC-AGC-GGATCAGCCACGCGATTGTATTGCACCTCAAAAGGTAAGTCATCC------------CA---T-------GGTGGATC---GGAT--CCCCTTGCGTTT---GAAT-GATTTGCATATTC------------------------------------------------------------------TGTATGTAGTTGATGT----TTG----------------ACTTGTCGTT-TT-----GT-----TGT--------------TAG-----------------------TTTAGTTGCATGCCC-CC--GCCTCC--CACAG-TATTGTCAACTTTC-------CG---------------------------AG--CCTGACCTATCCTAACCCCCAGCTCG-----------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CCTGGACGAG---GAGTCCCAGTCGCATTCCCAT--TCGCCA-TCC-------CAGCACATCCCATCCCAAGCGCAG------TC---TC------------TGTC-AGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGTCATCC------------TCCCATGGTGGATGGTAGT-----------CCCCCTGCGTCT---GAAT-GATTTGCATATGC------------------------------------------------------------------TGTACGTAGTTACTGT----TTG----------------ACTTGTCGTT-TT-----GTTGTGTTGT--------------TAG-----------------------TTTAGTTGCATGCCC-CC--GCCTCC--CACAG-TATTGTCAACTTTC-------TG---------------------------AG--CCTGACCTATCCTAACCCCCAGC--------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CCAG-----------------------------------------------------------CTTCCCAAGCGGAG------TCTTCTC------------TGTC-AGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGTCATCT------------CA---TGGAGGATGCTAGATGATCCCATCCCCCGTTTCGTCT---GAAT-GATTTGCATATCC------------------------------------------------------------------TGTATGTAGTTACTGTTTGTTTG----------------ACTTGTCGTT-TT-----GTTGTGTTGT--------------TAG-----------------------TTTAGTTGCATGCCC-CCTTGCCTCCCACACAG-TATTGTCAACTTTC-------TG---------------------------AG--CC--GCCTAACCTGACC--------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CCCA-----------------------TTCCCAG--TC-CCAGTCC-------CAGCCAGTCCCATCCCAAGCGGAG------TC---TC------------TCTC-AGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGTCATCC------------CA----------TGGTGGATC---------CCTCTGTCGCCT---GAAT-GATTTGCATTTTC------------------------------------------------------------------CGTATGTAGTTACTGT----TTG----------------ACTTGTCGTC-TT-----GTTGCGTTGT--------------TAG-----------------------TTTAGTTGCATGCCC-CC--GCCTTC--CACAG-TATTGTCAACTCTC-------CT---------------------------AG--CCTGACCTAGCCTAACCCCC-----------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CCAA------------------------TCCCAG----------TCGCGGTCACAGCAAGTCCCATCCCAAGCGAAG------TC---GC------------CGTC-AGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGCCATAC------------CACCACGATGGATGGTAGATG---------CCCCTTTCGTCT---GAAT-GATTTGCATATTC-------------CGTA-------------------------------------------------TGTATGTAGTTACTGTTTGTTTG----------------ACTTGTCGTT-CT-----GTTGTGTTCT--------------TAG-----------------------CTTAGTTGCATGCCC-CC--GCCTCA--CATAG-TATTGTCAACTTTC-------TG---------------------------AG--CCTGACCTATCCTAACCCCCAGC--------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................CCCAG----------TCGCGGTCACAGCAAGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23111.001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................CAGCAAGTCCCATCCCAAGCGAAG------TC---G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TCCCAAGCGAAG------TC---GC------------CGTC-AGC-GGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AA------------------------TCCCAG----------TCGCGGTCACAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
.....................................................................................................................GCCACGCGATTGTCTTGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................GGATCAGCCACGCGATTGTCTTGC............................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................C---GC------------CGTC-AGC-GGATCAGCCACGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................C---GC------------CGTC-AGC-GGATCAGCCACGCGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TCAGCCACGCGATTGTCTTGCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AAGCGAAG------TC---GC------------CGTC-AGC-GGATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................CACGCGATTGTCTTGCACCTCAAAAGC.................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CAAGCGAAG------TC---GC------------CGTC-AGC-GGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................C---GC------------CGTC-AGC-GGATCAGCCACGCGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TCCCAG----------TCGCGGTCACAGCAAGTCCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000
....................................................................................C---GC------------CGTC-AGC-GGATCAGCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................GTTCT--------------TAG-----------------------CTTAGTTGCATGC..................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................................................GTCCCATCCCAAGCGAAG------TC---GC------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.........................................................................................................C-AGC-GGATCAGCCACGCGATTGTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................AGCGAAG------TC---GC------------CGTC-AGC-GGATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CAAGCGAAG------TC---GC------------CGTC-AGC-GGATCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.......................................................................................................GTC-AGC-GGATCAGCCACGCGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........................................................CAAGTCCCATCCCAAGCGAAG------TC---GC------------T............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..........................................................AGTCCCATCCCAAGCGAAG------TC---G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................................................................AAGCGAAG------TC---GC------------CGTC-AGC-GG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................C---GC------------CGTC-AGC-GGATCAGCCACGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................CGTC-AGC-GGATCAGCCACGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................GATTGTCTTGCACCTCAAAAGC.................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AAGCGAAG------TC---GC------------CGTC-AGC-GGATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................CCACGCGATTGTCTTGCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................GTA-------------------------------------------------TGTATGTAGTTACTGTTT........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................GCCACGCGATTGTCTTGCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................GCCATAC------------CACCACGATGGATGGTAGA........................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................AGCCACGCGATTGTCTTGCACCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TCCCAAGCGAAG------TC---GC------------CGTC-AGC-GG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TGTCTTGCACCTCAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................GAAG------TC---GC------------CGTC-AGC-GGATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................CCCATCCCAAGCGAAG------TC---GC------------CGTC-AGC-GGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................GCAAGTCCCATCCCAAGCGAAG------TC---GC------------CG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................AGCCACGCGATTGTCTTGCACCTCAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................C-GGATCAGCCACGCGATTGTCTTGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................GAAG------TC---GC------------CGTC-AGC-GGATCAGCCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TCCCAAGCGAAG------TC---GC------------CGTC-AGC-G...................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................................................................................CAGCCACGCGATTGTCTTGCACCT........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AAGCGAAG------TC---GC------------CGTC-AGC-G...................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............................................................TCCCATCCCAAGCGAAG------TC---GC------------CGTC-........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................GCAAGTCCCATCCCAAGCGAAG------TC---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..............................CCAG----------TCGCGGTCACAGCAAGTCCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.............................................................CCCATCCCAAGCGAAG------TC---GC------------CGTC-AGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.........................................................................GAAG------TC---GC------------CGTC-AGC-GGATCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AAGCGAAG------TC---GC------------CGTC-AGC-GGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GCGAAG------TC---GC------------CGTC-AGC-GGATCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..AA------------------------TCCCAG----------TCGCGGTCACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................GTC-AGC-GGATCAGCCACGCGATTGTC................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................GTC-AGC-GGATCAGCCACGCGATTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CAA------------------------TCCCAG----------TCGCGGTCACAGCAAGTCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TGTTTG----------------ACTTGTCGTT-CT-----GT...............................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................CCATCCCAAGCGAAG------TC---GC------------CGTC-AGC-GGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TCCCAAGCGAAG------TC---GC------------CGTC-AGA-....................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AG----------TCGCGGTCACAGCAAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................TCACAGCAAGTCCCATCCCAAGCGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................GTC-AGC-GGATCAGCCACGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
droSim2
CCTGGATGAGACC------------CAATCCCAG----------TCGCGGCCACAGCAAGTCCCATCCCAAGCGAAG------TC---GC------------CGTC-AGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGCCATAC------------CA---CCTTGGATGGTAGATG---------CCCCTTTCGTCT---GAAT-GATTTGCATATTC-------------CGTA-------------------------------------------------TGTATGTAGTTACTGT----TTG----------------ACTTGTCGTT-CT-----GTTGTGTTCT--------------TAG-----------------------CTTAGTTGCATGCCC-CC--GCCTAA--CATAG-TATTGTCAACTTTC-------TG---------------------------AG--CCTGACCTATCCTAACCCCCAGC--------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAACTTTC-------TG---------------------------AG--CC.....................................................1913.00300300000000000000
....................................................................................................................AGCCACGCGATTGTCTTGCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.................................................................TCCCAAGCGAAG------TC---GC------------CGTC-AGC-GGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
....................................................................CAAGCGAAG------TC---GC------------CGTC-AGC-GG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000001000000000
.............................................................................................................................................................................CCTTGGATGGTAGATG---------CCCCT........................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
.....................................................................................................................................................................................GGTAGATG---------CCCCTTTCGTCT---..............................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
..........................AATCCCAG----------TCGCGGCCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
droSec2
CCA--------------------------------------------------CAGCAAGTCCCATCCCAAGCGAAG------TT---AC------------CGTC-AGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGCCATAC------------CA---CCTTGGATGGTAGATG---------CCCCTTTCGTCT---GAAT-GATTTGCATATTT-------------CGTA-------------------------------------------------TGTATGTAGTTACTGT----TTG----------------ACTTGTCGTT-CT-----GTTGTGTTCT--------------TAG-----------------------CTTAGTTGCATGCCC-CC--GCCTCA--CATAG-TATTGTCAACTTTC-------TG---------------------------AG--CCTGACCTATCCTAACCCCCAGC--------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................GCGAAG------TT---AC------------CGTC-AGC-GGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
......................................................................................................CGTC-AGC-GGATCAGCCACGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
............................................................................G------TT---AC------------CGTC-AGC-GGATCAGCCACGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.................................................................................................................ATCAGCCACGCGATTGTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
........................................................................CGAAG------TT---AC------------CGTC-AGC-GGATCAGCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
droYak3
CCTGGATGAGACC---------------------CGT------TCC-------CAGCCAGTCACATCCCAAGCGAAG------TC---GC------------CGTC-AGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGCCATAC------------GA---CGGTGGATGGCAGATG---------CCCCTTTCGTCT---GAAT-GATTTGCATATTC-------------CGAA-------------------------------------------------TGTATGTAGTTACTGT----TTG----------------ACTTGTCGTT-CT-----GTTGTGTTCC--------------TAG-----------------------CTAAGTTGCATGCCC-CC--GCCTCA--CATAG-TATTGTCAACTTTC-------TG---------------------------AG--CCTGACCTATCCTAACCCCCAGCTCAAGCTAACCGAAGA-----ACCTACATGAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................CAGCCACGCGATTGTCTTGC............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000
........................................................................................GC------------CGTC-AGC-GGATCAGCCACGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
............................................................................................................GC-GGATCAGCCACGCGATTGTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
....................................................................................C---GC------------CGTC-AGC-GGATCAGCCACGCGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
............................................................................................................................GATTGTCTTGCACCTCAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...............................................................................................................GGATCAGCCACGCGATTGTCTTGCACCT........................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
.....................................................................................................................................................................................................................................TC-------------CGAA-------------------------------------------------TGTATGTAGTTACTGT----T.....................................................................................................................................................................................................................................2311.00100100000000
.................................................................................................................................................................................................................................................................................................................GTTACTGT----TTG----------------ACTTGTCGT..........................................................................................................................................................................................................2011.00101000000000
......................................................................................................CGTC-AGC-GGATCAGCCACGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.......................................................................................................GTC-AGC-GGATCAGCCACGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...........................................................GTCACATCCCAAGCGAAG------TC---GC------------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
...................................................................CCAAGCGAAG------TC---GC------------CGTC-AGC-GGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
...................................................................................................................CAGCCACGCGATTGTCTTGCACCT........................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
droEre2
CCTGGACGAGATCCA------------CTCCCAG--TC-CCA-GTCCCGGTCACAGCAAGTCCCATCCCAAGCGAAG------TC---GC------------CGTC-AGC-GGATCAGCCACGCGATTGTCTTGCACCTCAAAAGGTAAGCCATAC------------CA---CGTTGGATGGTAGATG---------CCCCTTTCGTCT---GAAT-GATTTGCATATGT-------------CGTA-------------------------------------------------TGTATGTAGTTACTGT----TTG----------------ACTTGTCGTT-CT-----GTTGTGTTCC--------------TAG-----------------------CTTAGTTGCATGCCC-CT--GCCTCC--CTTAG-TATTGTCAACTTTC-------TC---------------------------AG--CCTGACCTATCCTAACCCCC-----------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........GATCCA------------CTCCCAG--TC-CCA-GTCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0021100000
.........................................................................GAAG------TC---GC------------CGTC-AGC-GGATCAGCCACGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
................................................................ATCCCAAGCGAAG------TC---GC------------CGTC-AGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.........................................A-GTCCCGGTCACAGCAAGTCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
...................................................CACAGCAAGTCCCATCCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.......................................................................................................GTC-AGC-GGATCAGCCACGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
..............................................................................................................................................................................................................GTCT---GAAT-GATTTGCATATGT-------------CGT............................................................................................................................................................................................................................................................................................................2411.0010000100
....................................................................................................................AGCCACGCGATTGTCTTGCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
...........................................................GTCCCATCCCAAGCGAAG------T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
....................................................................................................................AGCCACGCGATTGTCTTGCACCTCAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................2911.0011000000
............................................................................G------TC---GC------------CGTC-AGC-GGATCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
...........................................................GTCCCATCCCAAGCGAAG------TC---GC------------CGTC-A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010

Generated: 05/16/2015 at 08:50 PM