ID:

dvi_1813

 Coordinate:

scaffold_12726:258152-258302 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.72 -26.57 -26.47

Flybase annnotation

CDS [Dvir\GJ15297-cds]; exon [dvir_GLEANR_15616:2]; intron [Dvir\GJ15297-in]; Antisense to intron [Dvir\GJ15274-in]

No Repeatable elements found

mature
  1. dvi_1813  scaffold_12726:258229-258249 +
  2. scaffold_12875:1967461-1967481 +
  3. scaffold_12875:2851025-2851045 -
  4. scaffold_12875:15789967-15789987 +
  5. scaffold_12932:589057-589077 -
  6. scaffold_12932:915017-915037 +
  7. scaffold_12970:5119306-5119326 -
  8. scaffold_13047:6512018-6512038 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACCCCATGCAGATGCAAGCAACTGTTGCAGTTGCTGTTGCAGTTGCAAACGTACGTATTTTGCTTTTACTCAACTCATTGCCTCGTAATTAGTGGAAATTACTTGTGCCGCTTCCCCCAAAATACGACAGCAGCAGCAACAACAACGCTAGCAAAAAAGCAAATAACCGAAGACAAAAAAAAAAAGTGCGGCTGCAGCTGAGAGTCGCTTGTAATTACCGCAGCGATCACAGAACAACGATCAACGTCCAC
**************************************************...(((((((((..............(((((...))))).(((((..((.....)).))))).....))))))))).((((.(((((........(((.......................................)))))))).)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060662
9x160_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 M047
female body
 SRR060679
140x9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060673
9_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060678
9x140_testes_total
........AAGATCCAAGCAACTGTT................................................................................................................................................................................................................................. 18 2 18 0.39 7 7 0 0 0 0 0 0 0 0
...............................................................................................................................CAGCAGCAGCAACAACAACGC....................................................................................................... 21 0 8 0.25 2 0 0 0 1 1 0 0 0 0
...................................................................................................................................................................TTACCGAAGACAACAAAAA..................................................................... 19 2 10 0.20 2 0 0 0 0 0 1 1 0 0
......TGAAGATGCAAGCACTTGTTG................................................................................................................................................................................................................................ 21 3 7 0.14 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................ACAGTCCGACGATCAACGT.... 19 3 12 0.08 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................TAACCATAGACAAAAAAAAAA................................................................... 21 2 20 0.05 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................CAGTCCGACGATCAACGT.... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................GTCCGAAGACAAAAAAAA..................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TGGGGTACGTCTACGTTCGTTGACAACGTCAACGACAACGTCAACGTTTGCATGCATAAAACGAAAATGAGTTGAGTAACGGAGCATTAATCACCTTTAATGAACACGGCGAAGGGGGTTTTATGCTGTCGTCGTCGTTGTTGTTGCGATCGTTTTTTCGTTTATTGGCTTCTGTTTTTTTTTTTCACGCCGACGTCGACTCTCAGCGAACATTAATGGCGTCGCTAGTGTCTTGTTGCTAGTTGCAGGTG
**************************************************...(((((((((..............(((((...))))).(((((..((.....)).))))).....))))))))).((((.(((((........(((.......................................)))))))).)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 V116
male body		 V053
head
 V047
embryo
 SRR060689
160x9_testes_total
 SRR060667
160_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 M047
female body
 SRR060659
Argentina_testes_total
 SRR060665
9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060683
160_testes_total
 SRR060674
9x140_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 M028
head
.........................................CAACGGTAGCATGCAGAAAA.............................................................................................................................................................................................. 20 3 13 1.69 22 7 2 0 2 0 2 2 1 1 1 1 1 1 1 0 0 0 0 0
....................................AGCGTCAAAGTTGGCATGC.................................................................................................................................................................................................... 19 3 9 0.33 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TTTTATGCTGCCCTCGTCGTCGT.............................................................................................................. 23 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GTCGTGATGCTAGTTGCA.... 18 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................AGCGTCAACTTTGGCATGC.................................................................................................................................................................................................... 19 3 14 0.14 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0
........................................................................................................................................................................................TCACTCCGACGTCCACTATC............................................... 20 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................AGCTTCAACGTTGGCATGC.................................................................................................................................................................................................... 19 3 19 0.11 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0
................................................................................................................................................................................................................AACATTAAGGGTGTCGATAG....................... 20 3 19 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CGATGTTGTTGCGACCGTTC................................................................................................ 20 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TCTGCTGTCGTCGTCGTTGT.............................................................................................................. 20 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12726:258102-258352 + dvi_1813 ACCCC-A-----TGCAGATGCAAGCAA---CTG---------------TTG------CAG----------------------------TTG------------------CTGTTGCAGTTGCAAACG------------------------------------------------------TA-------------------------------------------------------------------------------------------CGTATTTTGCTTTTACTCAAC------------TCATTGCCTCGTAATTAGTGGAAATTA-----------------------------------C----TTGTGCCGC-------------------------------------------------------TTCCCCCAAAATACGACAGCA------GC---A-------------------------------------------GCAA---------CAA---CAAC---GCTAGC---------------------------------------AAAAA-----AGCAAATAA-------CCGAAGACA--------A------AA-------------------------------------------------A---AAAAAAGTGCGGCTGCAGCTGAGAGTCGCTTGTAATTACCGCAGCGATCACAGAACAACGATCAACGTCC---AC-----------------------
droMoj3 scaffold_6308:1910244-1910488 + ACCCC-A-----TGCAGATGCATGCAA---CTG---------------TTG------CAG----------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTGCTTTTGCTCAAC------------TCATTGCCTCGTAATTAGTGGATATTA-----------------------------------C----TTGTGCCGC-------------------------------------------------------TTCCCCCAAAATCCGACAAC---AGCTTT---G---ACTGCA----------------------------------------------------------------------------------------------------------AAAA-----AGAAAAAAA-------------------------------AA----AAAAAAAAAGAAAAAACCG-GCCGAGAAGAAGCAGA--------AGA----AAAAGTGCGGCTGCAGCTGAGAGTCGCTTGTAATTACCGCAACGATCACCAAACAACGATCAACGTCCACTGC-----------------------
droGri2 scaffold_15203:2470121-2470444 + ACCCC-A-----TGCAGATGCACGCAA---CTG---------------TTG------CAG----------------------------TTG------------------CACTTGCTGCTGCTGCTG------------------------------------------------------CTGCT---------GCT--------------------------------------------------------GCTACTGTTGCAAAGTTGTACGGATTTTACTTTTACTCAAC------------TCATTGCCTCGTAATTAGTGGAAATTA-----------------------------------C----TTGTGCCGT-------------------------------------------------------TTC-CCCAAAATGC------AACAACAAC---A---ACTGCAACTGCAACTGCTACAGCGA-------------------------------------------------C------------------AGCGACAGCCACAGCAACAAAAAGCTCAAGCAAATAA-------ATGAAGATA--------A------AAACAATAACAACAAGTA---------------------------------A---AAAAAAGTGCGGCTGCAGCTGAGAGTCGCTTGTAATTACCGCAACGATCAACGAACACCGATCAACGTCG---AC-----------------------
droWil2 scf2_1100000004902:11023529-11023740 + GACGC-A-----GCCCGGTAC----CG---CTG---------------TTG------CTG----------------------------TTGCCATTGAAGG-----------------AT---------------------------------------------------------------------------------------------------------GTG----------------------------------------------CG-CTTTGGCTTTTGAAAAGA-----------------------------TTTCGATTTTTGGGCTCT--------------------------------TTTCAATTG-----------------------TTCG-------------------CACG-------G-------------TAGCAACGGCAGC---A---GCAACAACAACAACAACAACAGCAA----------------------------------CAGC---AA------C------------------G---------------GCGG------------------------------------------AGCCCA-----------------------------------------AAAC------------TAATTTGCGGCTAACGTTTTAGGTTGCCGGAAATGGCTAAGGCCATTAGA----------------------G-----------------------
dp5 XR_group6:12594695-12594892 + AACTC-A-----G-CAACAGCA-GCAA---CAC---------------TCA------CAT----------------------------CAG------------------CAGCAACAGTTGCAACAG------------------------------------------------------CACCC---------CCAGCAGCAGCAGC---------------------------AGCAGCA-----------ACAGCAACAGC--------------------------A------------------------------------------A--------------------------------------------------------------------------------------TCTTTTGGCTTAGCCGACAC-C------------AGCAACAACAAC---A---ACAACAACAACAGCAGCAACAACAG-------------------------------------------------------------------TGGC---------------------------------------------------------AA------CAGCAG--------------CAGCA-ACAGCAA---------------------------------------------------------------------------------------------CAACGGTGTCTCCTCGAAGTCGTTTGT
droPer2 scaffold_58:329285-329478 - ACCTC-A-----CGCAGGACA-CGCAG---GGC---ACGCA-GGAAGGAGGCGGTGGCAG----------------------------TGG------------------CGGTGGCGGTGGCATAC---------------------------------------------------------------------GAT--------A--GAAGCATT-------CGTG-----------------------------------------------------TGCTTT-----------------------TAGCTTGAATACCAAAACAATTTGAGCGCACAGTAAAATTCAATGGACGCAGGAGTAAA-----------------------------------------------------------------------------------------AACGGAA---------------CC----------------------------------------------------------AATAGA---------------------------------------GAAAG-----AGA------------------------------A------AATCAGCAGA--------------------------AGCAAA--------AAAAA-------------------------------------------------------------------------AA-----------------------
droAna3 scaffold_13047:1344818-1344951 + ACTGC-A-----AC-TGCAAC-------------------------------------TGCAACTGGCAATTGATTTGGTC-------------------------------------------------------AACATACGGCCTGCTGATTGCCACTGACTTGGTT----------------------------------------T-----C-------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTG----AC---TAA-----------------------------------------------TGA-------------TACAAACGACAAC---AGCAACTGCAACACTAGCAACAACAACAC-------------------------------------------------------------------TAGC---------------------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------A-----------------------
droBip1 scf7180000396641:1028401-1028551 + ATTCC-C-----TGCACCAGCA-GCAA---CAG---------------TCG------CAA----------------------------CAG------------------CAGTCGCAGCAGCAGCAG------------------------------------------------------CAGCT---------CAA--------------------------------------------------------CCACCAGCAGC--------------------------T------------------------------------------AACGCACC-------------------------------------------------------AGCAGCAACAGGCGCT-------------------------------------GC------ACCAGCAAC---T---GTCGCACCAGCAGCAGCAACAGCAGCA-------------GCAG---------CAA---CAAC---AC------C------------------C-------------------------------------------------------------------------------------------------------------------------G-------------------------------------------------------------------------CA-----------------------
droKik1 scf7180000302388:1127968-1128127 - CCTA--------TGCAACTGGC-ATAT---TTG---------------TTG------CAG----------------------------TTG------------------CAGTTGCAGTTGCACAT---------------------------------------------------------------------ATTGTTACTGCA---------------------------------------------------------------------------------------------------------ATTTGCTTAACCGAT-----CA-----------------------------------C----TTTTGCTAA-------------------------------------------------------TTCGCAGCACATTCGCTGGCA------AC---A---A-----------------------------------AAGAGCTG---------CGA---CGGC---GGCGGT---------------------------------------ACAAG-----AACATG-------GCGCCAAAAAC-------------------------------------------------------------------AAGA-------------------------------------------------------------------------AA-----------------------
droFic1 scf7180000453872:482986-483199 + CAATGCAAACCAA------GCAAGCAA---CAA---------------CAA------CCA-------------------------------CCATGAGAGCAACAGCAACA---CCACCGCCACCT---------------------------------------TGGTGGTCAACACCAGCAGCA---------CT-TCAGCAGCAGC---------------------------AGCAACATCAGCAGCAGG--------------------------------------------------------------------------------------------------------------------AGCA---------AC---ATCAGCAGCA-------------------------------------------------------------------ACTTCG---AC------------------------------C-TCGGCAGCAG---------CAGCAA---CTGCAACTGCAACGGCAAGTGCAACAGCAGCAGC---------------------------------------------------------AA------CATCAG----------CCA----------------------------------------------------------------------------------------------CGAACAACAACC---AC-----------------------
droEle1 scf7180000491212:1887309-1887454 - CCAC--A-----AGCAGATGCA-GTTA---CGG---------------ATG------CAG----------------------------TTG------------------CAGTTGCGGTTGCAGTGG------------------------------------------------------CATCC---------GTG--------------------------------------------------------CCTA--------------------------ATTTAATCAAA------------T--TAGCTGAGAAATG--------------------------------------------------------------------------------------CAATGGAATGAATTTGTTCGTTTGGTCAGAGA-------------CAGAAACGGCAAC---AGAAACAGAAG-------------------------------------------------------------------C------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-----------------------
droRho1 scf7180000779337:100077-100252 - CCCTC-T-----TTCATCCGC---------CGG---------------TTG------TGG----------TCGCTTTTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAC------------TCATTGCCTCGTAATTAGTGGAAATTACCTGCGCAGTCCCCTGCTCTATCTCCCAAAAAAAA--------------------------------------------------AATACGCTCGAAAGAGACGGGA------AATACACT-----------G---AGAAAGAGATG-------------------------------------------------------------------G--------------------------------------------------------------------------------------ACAGA---------CTCGCGGAGAT-TCGCCGC---------------------------------------------------TTGTAATT------------------------------------AC-----------------------
droBia1 scf7180000302041:838333-838508 - ATTGC-T-----G-CTGGCCC-------------------------------------GGCAA--------CATGTTGAC----------------------------------------------------------------------------------------------------------AAGGTCAGC--------------GT-----CTAATGGAAATTGACGGCGGTGCAA-------------CCGCA---------------GTCATCTATCTCTTCCTCTTC------------CTCTCGCCAAGTG-TGAGTGCATAAAT-----------------------------------C----ATGCGTTGC------------------------------------------------------------CCAGACGAC------AACAGCAGC---A---ACAGCAACAGCAACAGCAACAGCAA-------------------------------------------------C------------------AGC---------------------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------A-----------------------
droTak1 scf7180000415795:343236-343380 + CCTC--A-----TGCATGCGC--CCAA---CTA---------------TC---------------------------------------------------------------------------------------------------------------------------------------------------------------CT-----TCAATGTGAGTG------------------------------------------------GATTTTTCCTTTGCACAGATCATATAACTAATTCCTATCTACCAAACAGTCAAAATCT------------------------------------CACG---------AC---CAATGCCACG-------------------------------------------------------------------CCC---------------------------------ACCAGC-GCA-CAGCTGCAACAGCAGCAG---CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-----------------------
droEug1 scf7180000409471:1596663-1596851 + AGCAG-G-----TC-AAGAGCCAACAG---CTG---------------AAG------CAG----------------------------CAA------------------CATTCGGCATTGGTCAA---------------------------------------------------GTTGCT---GGAATCGGC--------------GC-----CCATTAACA-------------------------------AGCAACAG--------------------------------------------------------------------CAGACGCCCA-------------------------------------------------------AACAAATTGTTTACCT-------------------------------------GC------AACAGCAAC---A---ACAGCAGCAGCAGCAGCAACAACACCAGCAGCC-A------------------------CAGC---AA------C------------------C---------------GCAA------------------------------------------CGTAAA-----------------------------------------AGACTGAAAAACGA-------------------------------------------------------------------------AG-----------------------
dm3 chrX:5446238-5446430 + ACATG-C--------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGC---------------------------AGCAGCAGCAGCAGTGGA--------------------------------------------------------------------------------------------------------------------AGCA---------ACATCAATTTCAACA-------------------------------------------------------------------TCA---------------------------------TTCAACTTCAGGAGCAG---------CAA---CAAC---AGCGAC---------------------------------------AAAAG-----GGCAATTAAGTAGGCC--CAAGATCT--CGGCAA------GAAAG---------AGTTAAGAGCA-CCCAAGA----------------------------------------------AGGGCCTAGAAT----GAAACAATCATAGGATGTC--------------------TTACATTTAAGCCAAGACC
droSim2 3r:20059949-20060148 + GGCCC-A-----GGCAC-AGGA-GCAA---CAC---------------TTG------CAG----------------------------CAG---------------CAACA---CCAGCAGCACCA---------------------------------------------------GTTGCAGCT---------CTTGCAACTGCAGC---------------------------AGCAGCAACAGCAGTTGC--------------------------------------------------------------------------------------------------------------------AGCA---------AC---CAGTGCAGCA-------------------------------------------------------------------CCA---------------------------------TCCGCC-GCAGCAGCTG---------CAA---CAGC---AGCAGCAGCAGCAGGTG---------------------------------------------------GCT--CAGGATCCAGCAGCAA------GTGCA---------TTCGAGGAGCA-CCAGCGA---------------------------------------------------------TTGGT------------------------------GCAGC-----------------------
droSec2 scaffold_0:20880743-20880945 + GGCCC-A-----GGCAC-AGGA-GCAA---CAC---------------TTG------CAG----------------------------CAG---------------CAACA---CCAGCAGCACCA---------------------------------------------------GTTGCAGCT---------CTTGCAACTGCAGC---------------------------AGCAGCAACAGCAGTTGC--------------------------------------------------------------------------------------------------------------------AGCA---------AC---CAGTGCAGCA-------------------------------------------------------------------CCA---------------------------------TCCGCC-GCAGCAGCTG---------CAACAA---CAGCAGCAGCAGCAGCAGGTG---------------------------------------------------GCT--CAGGATCCAGCAGCAA------GTGCA---------TTCGAGGAGCA-CCAGCGA---------------------------------------------------------TTGGT------------------------------GCAGC-----------------------
droYak3 3L:7523671-7523913 + AGCAG-C-----A----------GCAACAACTAATCCTGCTG------CCC------CAG---TTGGATCCTAATGTTGTCAACACGT---CCACGGCAGCAGCAGCGGCA---C-----------------------------------------------AGCTCGTC--CA---GTTGCAGCA---------GCAGCATCAACAGC---------------------------AGCAGCAGCTGCAGCAAC--------------------------------------------------------------------------------------------------------------------AGCA---------AC---TGCAGCAGCA-------------------------------------------------------------------ACAGCA---GC------------------------------T-GCAGCAGCAA---------CAGCAA---CTGCAACAGCAACAGCAGCTGCAAC----------------------------------------TC-----AAT--CAGCAG-CAGCAGCAA------CTC-----------TACCAGCAGCA-ACAGCAA---------------------------------------------------------TA------------------------------CCT---GC-----------------------
droEre2 scaffold_4784:11285393-11285587 - AGCAG-C--------AGCAGCA-GCAA---GCG---------------TTG------CAT----------------------------CTG------------------CAGCAGCAACAGCAACAACATTCCAGTAACATGGCACTAAAACGTGATCGTGATCGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCTCAACGTCAAA-------------TGGCAACGGCAAC---AGCAACAGCAACAGCAACAGCAGCAACAC-------------------------------------------------------------------CAAC------A------ACAA----------CACCTC-------A--CTGGACCCAACAGCAA-----------------------------CATCCAGCAA---------------------------------------------------------C---T------------------------------GCAGC----------------------T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ACCCC-A-----TGCAGATGCAAGCAA---CTG---------------TTG------CAG----------------------------TTG------------------CTGTTGCAGTTGCAAACG------------------------------------------------------TA-------------------------------------------------------------------------------------------CGTATTTTGCTTTTACTCAAC------------TCATTGCCTCGTAATTAGTGGAAATTA-----------------------------------C----TTGTGCCGC-------------------------------------------------------TTCCCCCAAAATACGACAGCA------GC---A-------------------------------------------GCAA---------CAA---CAAC---GCTAGC---------------------------------------AAAAA-----AGCAAATAA-------CCGAAGACA--------A------AA-------------------------------------------------A---AAAAAAGTGCGGCTGCAGCTGAGAGTCGCTTGTAATTACCGCAGCGATCACAGAACAACGATCAACGTCC---AC-----------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA------GC---A-------------------------------------------GCAA---------CAA---CAAC---GC......................................................................................................................................................................................................................................................2180.252000000000000000000000000000001000000100000000000000000000000000
droMoj3
ACCCC-A-----TGCAGATGCATGCAA---CTG---------------TTG------CAG----------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTGCTTTTGCTCAAC------------TCATTGCCTCGTAATTAGTGGATATTA-----------------------------------C----TTGTGCCGC-------------------------------------------------------TTCCCCCAAAATCCGACAAC---AGCTTT---G---ACTGCA----------------------------------------------------------------------------------------------------------AAAA-----AGAAAAAAA-------------------------------AA----AAAAAAAAAGAAAAAACCG-GCCGAGAAGAAGCAGA--------AGA----AAAAGTGCGGCTGCAGCTGAGAGTCGCTTGTAATTACCGCAACGATCACCAAACAACGATCAACGTCCACTGC-----------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ACCCC-A-----TGCAGATGCACGCAA---CTG---------------TTG------CAG----------------------------TTG------------------CACTTGCTGCTGCTGCTG------------------------------------------------------CTGCT---------GCT--------------------------------------------------------GCTACTGTTGCAAAGTTGTACGGATTTTACTTTTACTCAAC------------TCATTGCCTCGTAATTAGTGGAAATTA-----------------------------------C----TTGTGCCGT-------------------------------------------------------TTC-CCCAAAATGC------AACAACAAC---A---ACTGCAACTGCAACTGCTACAGCGA-------------------------------------------------C------------------AGCGACAGCCACAGCAACAAAAAGCTCAAGCAAATAA-------ATGAAGATA--------A------AAACAATAACAACAAGTA---------------------------------A---AAAAAAGTGCGGCTGCAGCTGAGAGTCGCTTGTAATTACCGCAACGATCAACGAACACCGATCAACGTCG---AC-----------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GACGC-A-----GCCCGGTAC----CG---CTG---------------TTG------CTG----------------------------TTGCCATTGAAGG-----------------AT---------------------------------------------------------------------------------------------------------GTG----------------------------------------------CG-CTTTGGCTTTTGAAAAGA-----------------------------TTTCGATTTTTGGGCTCT--------------------------------TTTCAATTG-----------------------TTCG-------------------CACG-------G-------------TAGCAACGGCAGC---A---GCAACAACAACAACAACAACAGCAA----------------------------------CAGC---AA------C------------------G---------------GCGG------------------------------------------AGCCCA-----------------------------------------AAAC------------TAATTTGCGGCTAACGTTTTAGGTTGCCGGAAATGGCTAAGGCCATTAGA----------------------G-----------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAACAACAGCAA----------------------------------CA.............................................................................................................................................................................................................................................................26200.05100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAACAACAGCAA----------------------------------CA.............................................................................................................................................................................................................................................................25200.05100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAGCAA----------------------------------CAGC---........................................................................................................................................................................................................................................................22200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAACAGCA..................................................................................................................................................................................................................................................................................................19200.05100001
dp5
AACTC-A-----G-CAACAGCA-GCAA---CAC---------------TCA------CAT----------------------------CAG------------------CAGCAACAGTTGCAACAG------------------------------------------------------CACCC---------CCAGCAGCAGCAGC---------------------------AGCAGCA-----------ACAGCAACAGC--------------------------A------------------------------------------A--------------------------------------------------------------------------------------TCTTTTGGCTTAGCCGACAC-C------------AGCAACAACAAC---A---ACAACAACAACAGCAGCAACAACAG-------------------------------------------------------------------TGGC---------------------------------------------------------AA------CAGCAG--------------CAGCA-ACAGCAA---------------------------------------------------------------------------------------------CAACGGTGTCTCCTCGAAGTCGTTTGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.ACTC-A-----G-CAACAGCA-GCAA---CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------CAGCAG--------------CAGCA-ACAGCA.........................................................................................................................19200.2550000500000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAGCAACAACA..................................................................................................................................................................................................................................................................................................23200.1020110000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAGCAGCAACA.....................................................................................................................................................................................................................................................................................................21200.1020100100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAACAAC...................................................................................................................................................................................................................................................................................................21200.1020110000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------------------------------AA------CAGCAG--------------CAGCA-ACAGC..........................................................................................................................19200.1020010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---A---ACAACAACAACAGCAGCAACA.....................................................................................................................................................................................................................................................................................................24140.0710000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAC---A---ACAACAACAACAGCAGC.........................................................................................................................................................................................................................................................................................................25200.0510000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---A---ACAACAACAACAGCA...........................................................................................................................................................................................................................................................................................................20200.0510100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAAC---A---ACAACAACA.................................................................................................................................................................................................................................................................................................................19200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAAC---A---ACAACAACA.................................................................................................................................................................................................................................................................................................................21200.0510100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------------------------------AA------CAGCAG--------------CAGCA-ACAGCAA---------------------------------------------------------------------------------------------C..........................22200.0510100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGCAGCAACAACA..................................................................................................................................................................................................................................................................................................21200.0510100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---A---ACAACAACAACAGCAGCAA.......................................................................................................................................................................................................................................................................................................24200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAGCAACAAC...................................................................................................................................................................................................................................................................................................22200.0510001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAAC---A---ACAACAACAAC...............................................................................................................................................................................................................................................................................................................23200.0510100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAC---A---ACAACAACAACAGCAGC.........................................................................................................................................................................................................................................................................................................23200.0510010000000
........................................................................................................................................................................................................AGCAGCAGC---------------------------AGCAGCA-----------ACAGCAACAGC--------------------------A------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.0510100000000
.............................................................................................................................................................................................................CAGC---------------------------AGCAGCA-----------ACAGCAACAGC--------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000100000
droPer2
ACCTC-A-----CGCAGGACA-CGCAG---GGC---ACGCA-GGAAGGAGGCGGTGGCAG----------------------------TGG------------------CGGTGGCGGTGGCATAC---------------------------------------------------------------------GAT--------A--GAAGCATT-------CGTG-----------------------------------------------------TGCTTT-----------------------TAGCTTGAATACCAAAACAATTTGAGCGCACAGTAAAATTCAATGGACGCAGGAGTAAA-----------------------------------------------------------------------------------------AACGGAA---------------CC----------------------------------------------------------AATAGA---------------------------------------GAAAG-----AGA------------------------------A------AATCAGCAGA--------------------------AGCAAA--------AAAAA-------------------------------------------------------------------------AA-----------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
ACTGC-A-----AC-TGCAAC-------------------------------------TGCAACTGGCAATTGATTTGGTC-------------------------------------------------------AACATACGGCCTGCTGATTGCCACTGACTTGGTT----------------------------------------T-----C-------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTG----AC---TAA-----------------------------------------------TGA-------------TACAAACGACAAC---AGCAACTGCAACACTAGCAACAACAACAC-------------------------------------------------------------------TAGC---------------------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------A-----------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ATTCC-C-----TGCACCAGCA-GCAA---CAG---------------TCG------CAA----------------------------CAG------------------CAGTCGCAGCAGCAGCAG------------------------------------------------------CAGCT---------CAA--------------------------------------------------------CCACCAGCAGC--------------------------T------------------------------------------AACGCACC-------------------------------------------------------AGCAGCAACAGGCGCT-------------------------------------GC------ACCAGCAAC---T---GTCGCACCAGCAGCAGCAACAGCAGCA-------------GCAG---------CAA---CAAC---AC------C------------------C-------------------------------------------------------------------------------------------------------------------------G-------------------------------------------------------------------------CA-----------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CCTA--------TGCAACTGGC-ATAT---TTG---------------TTG------CAG----------------------------TTG------------------CAGTTGCAGTTGCACAT---------------------------------------------------------------------ATTGTTACTGCA---------------------------------------------------------------------------------------------------------ATTTGCTTAACCGAT-----CA-----------------------------------C----TTTTGCTAA-------------------------------------------------------TTCGCAGCACATTCGCTGGCA------AC---A---A-----------------------------------AAGAGCTG---------CGA---CGGC---GGCGGT---------------------------------------ACAAG-----AACATG-------GCGCCAAAAAC-------------------------------------------------------------------AAGA-------------------------------------------------------------------------AA-----------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CAATGCAAACCAA------GCAAGCAA---CAA---------------CAA------CCA-------------------------------CCATGAGAGCAACAGCAACA---CCACCGCCACCT---------------------------------------TGGTGGTCAACACCAGCAGCA---------CT-TCAGCAGCAGC---------------------------AGCAACATCAGCAGCAGG--------------------------------------------------------------------------------------------------------------------AGCA---------AC---ATCAGCAGCA-------------------------------------------------------------------ACTTCG---AC------------------------------C-TCGGCAGCAG---------CAGCAA---CTGCAACTGCAACGGCAAGTGCAACAGCAGCAGC---------------------------------------------------------AA------CATCAG----------CCA----------------------------------------------------------------------------------------------CGAACAACAACC---AC-----------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CCAC--A-----AGCAGATGCA-GTTA---CGG---------------ATG------CAG----------------------------TTG------------------CAGTTGCGGTTGCAGTGG------------------------------------------------------CATCC---------GTG--------------------------------------------------------CCTA--------------------------ATTTAATCAAA------------T--TAGCTGAGAAATG--------------------------------------------------------------------------------------CAATGGAATGAATTTGTTCGTTTGGTCAGAGA-------------CAGAAACGGCAAC---AGAAACAGAAG-------------------------------------------------------------------C------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-----------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CCCTC-T-----TTCATCCGC---------CGG---------------TTG------TGG----------TCGCTTTTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAC------------TCATTGCCTCGTAATTAGTGGAAATTACCTGCGCAGTCCCCTGCTCTATCTCCCAAAAAAAA--------------------------------------------------AATACGCTCGAAAGAGACGGGA------AATACACT-----------G---AGAAAGAGATG-------------------------------------------------------------------G--------------------------------------------------------------------------------------ACAGA---------CTCGCGGAGAT-TCGCCGC---------------------------------------------------TTGTAATT------------------------------------AC-----------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATTGC-T-----G-CTGGCCC-------------------------------------GGCAA--------CATGTTGAC----------------------------------------------------------------------------------------------------------AAGGTCAGC--------------GT-----CTAATGGAAATTGACGGCGGTGCAA-------------CCGCA---------------GTCATCTATCTCTTCCTCTTC------------CTCTCGCCAAGTG-TGAGTGCATAAAT-----------------------------------C----ATGCGTTGC------------------------------------------------------------CCAGACGAC------AACAGCAGC---A---ACAGCAACAGCAACAGCAACAGCAA-------------------------------------------------C------------------AGC---------------------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------A-----------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CCTC--A-----TGCATGCGC--CCAA---CTA---------------TC---------------------------------------------------------------------------------------------------------------------------------------------------------------CT-----TCAATGTGAGTG------------------------------------------------GATTTTTCCTTTGCACAGATCATATAACTAATTCCTATCTACCAAACAGTCAAAATCT------------------------------------CACG---------AC---CAATGCCACG-------------------------------------------------------------------CCC---------------------------------ACCAGC-GCA-CAGCTGCAACAGCAGCAG---CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-----------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AGCAG-G-----TC-AAGAGCCAACAG---CTG---------------AAG------CAG----------------------------CAA------------------CATTCGGCATTGGTCAA---------------------------------------------------GTTGCT---GGAATCGGC--------------GC-----CCATTAACA-------------------------------AGCAACAG--------------------------------------------------------------------CAGACGCCCA-------------------------------------------------------AACAAATTGTTTACCT-------------------------------------GC------AACAGCAAC---A---ACAGCAGCAGCAGCAGCAACAACACCAGCAGCC-A------------------------CAGC---AA------C------------------C---------------GCAA------------------------------------------CGTAAA-----------------------------------------AGACTGAAAAACGA-------------------------------------------------------------------------AG-----------------------SizeHit CountTotal NormTotal
No Reads
dm3
ACATG-C--------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGC---------------------------AGCAGCAGCAGCAGTGGA--------------------------------------------------------------------------------------------------------------------AGCA---------ACATCAATTTCAACA-------------------------------------------------------------------TCA---------------------------------TTCAACTTCAGGAGCAG---------CAA---CAAC---AGCGAC---------------------------------------AAAAG-----GGCAATTAAGTAGGCC--CAAGATCT--CGGCAA------GAAAG---------AGTTAAGAGCA-CCCAAGA----------------------------------------------AGGGCCTAGAAT----GAAACAATCATAGGATGTC--------------------TTACATTTAAGCCAAGACCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAG---------CAA---CAAC---AGCGAC---------------------------------------A..........................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTAGGCC--CAAGATCT--CGGCAA------G........................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TCAATTTCAACA-------------------------------------------------------------------TCA---------------------------------TTCAACT........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................GCAGCAGCAGCAGTGGA--------------------------------------------------------------------------------------------------------------------AG................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................AGCAGCAGCAGCAGTGGA--------------------------------------------------------------------------------------------------------------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................1940.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....G-C--------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGC---------------------------AGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAG---------CAA---CAAC---AGCG....................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ATG-C--------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGC---------------------------AGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2280.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CATG-C--------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGC---------------------------AGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGC---------------------------AGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000001000000000000000000000
......C--------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGC---------------------------AGCAGCAGCAGCAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2570.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ATG-C--------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGC---------------------------AGCAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGC---------------------------AGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAG---------CAA---CAAC---AGC.....................................................................................................................................................................................................................................................18100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.............................................................................................................................................................................................................CAGC---------------------------AGCAGCAGCAGCAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ATG-C--------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGC---------------------------AGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......C--------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGC---------------------------AGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGC---------------------------AGCAGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAGAAT----GAAACAAGAT................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....G-C--------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGC---------------------------AGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGC---------------------------AGCAGCAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
...............AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGC---------------------------AGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......C--------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGC---------------------------AGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
......C--------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGC---------------------------AGCAGCAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
droSim2
GGCCC-A-----GGCAC-AGGA-GCAA---CAC---------------TTG------CAG----------------------------CAG---------------CAACA---CCAGCAGCACCA---------------------------------------------------GTTGCAGCT---------CTTGCAACTGCAGC---------------------------AGCAGCAACAGCAGTTGC--------------------------------------------------------------------------------------------------------------------AGCA---------AC---CAGTGCAGCA-------------------------------------------------------------------CCA---------------------------------TCCGCC-GCAGCAGCTG---------CAA---CAGC---AGCAGCAGCAGCAGGTG---------------------------------------------------GCT--CAGGATCCAGCAGCAA------GTGCA---------TTCGAGGAGCA-CCAGCGA---------------------------------------------------------TTGGT------------------------------GCAGC-----------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................AG---------------CAACA---CCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
droSec2
GGCCC-A-----GGCAC-AGGA-GCAA---CAC---------------TTG------CAG----------------------------CAG---------------CAACA---CCAGCAGCACCA---------------------------------------------------GTTGCAGCT---------CTTGCAACTGCAGC---------------------------AGCAGCAACAGCAGTTGC--------------------------------------------------------------------------------------------------------------------AGCA---------AC---CAGTGCAGCA-------------------------------------------------------------------CCA---------------------------------TCCGCC-GCAGCAGCTG---------CAACAA---CAGCAGCAGCAGCAGCAGGTG---------------------------------------------------GCT--CAGGATCCAGCAGCAA------GTGCA---------TTCGAGGAGCA-CCAGCGA---------------------------------------------------------TTGGT------------------------------GCAGC-----------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGGTG---------------------------------------------------GC..................................................................................................................................................................................1820.5010001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAA---CAGCAGCAGCAG................................................................................................................................................................................................................................................18200.1020020
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAA---CAGCAGCAGCAGCAGC............................................................................................................................................................................................................................................22200.0511000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA---CAGCAGCAGCAGCA..............................................................................................................................................................................................................................................19200.0511000
droYak3
AGCAG-C-----A----------GCAACAACTAATCCTGCTG------CCC------CAG---TTGGATCCTAATGTTGTCAACACGT---CCACGGCAGCAGCAGCGGCA---C-----------------------------------------------AGCTCGTC--CA---GTTGCAGCA---------GCAGCATCAACAGC---------------------------AGCAGCAGCTGCAGCAAC--------------------------------------------------------------------------------------------------------------------AGCA---------AC---TGCAGCAGCA-------------------------------------------------------------------ACAGCA---GC------------------------------T-GCAGCAGCAA---------CAGCAA---CTGCAACAGCAACAGCAGCTGCAAC----------------------------------------TC-----AAT--CAGCAG-CAGCAGCAA------CTC-----------TACCAGCAGCA-ACAGCAA---------------------------------------------------------TA------------------------------CCT---GC-----------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------CTC-----------TACCAGCAGCA-ACAGC..........................................................................................................................2111.00100010000000
.................................................................................AACACGT---CCACGGCAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
....................................................................................................................................................................................GCAGCA---------GCAGCATCAACAGC---------------------------AGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2650.40200000000002
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAA---------CAGCAA---CTGCAACC....................................................................................................................................................................................................................................................2450.20100100000000
.........................................................................................................................................................................................A---------GCAGCATCAACAGC---------------------------AGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.18201100000000
..................................................................................................................................................................................................................................................................................................................................................................................AGCA---------AC---TGCAGCAGCA-------------------------------------------------------------------ACAGCA---GC------------------------------..........................................................................................................................................................................................................................................................................................2460.17101000000000
...................................................................................................................................................................................................GCAGCATCAACAGC---------------------------AGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.06101000000000
.......................................................................................................................................................................................GCA---------GCAGCATCAACAGC---------------------------AGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.06101000000000
......................................................................................................................................................................................AGCA---------GCAGCATCAACAGC---------------------------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000100000
droEre2
AGCAG-C--------AGCAGCA-GCAA---GCG---------------TTG------CAT----------------------------CTG------------------CAGCAGCAACAGCAACAACATTCCAGTAACATGGCACTAAAACGTGATCGTGATCGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCTCAACGTCAAA-------------TGGCAACGGCAAC---AGCAACAGCAACAGCAACAGCAGCAACAC-------------------------------------------------------------------CAAC------A------ACAA----------CACCTC-------A--CTGGACCCAACAGCAA-----------------------------CATCCAGCAA---------------------------------------------------------C---T------------------------------GCAGC----------------------TSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................CGTGATCGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCTCAACGTCAAA-------------TGG...........................................................................................................................................................................................................................................................................................................................................2911.0010000100
...................................................................................................................................................................CGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCTCAACGTCAAA-------------TGGC..........................................................................................................................................................................................................................................................................................................................................2411.0010000010
........................................................................................................................................AACATGGCACTAAAACGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAA-----------------------------CATCCAGCAA---------------------------------------------------------C---T------------------------------GCAGC----------------------T2611.0011000000
...........................................................................................................................................................ATCGTGATCGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCTCAAC.................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.......................GCAA---GCG---------------TTG------CAT----------------------------CTG------------------CAGCAGCAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001000
.....................................................................................................................................................AACGTGATCGTGATCGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A..........................................................................................................................................................................................................................................................................................................................................................................1920.5010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAGCAACAGCAGCAAC...................................................................................................................................................................................................................................................................................................23110.0910000010

Generated: 05/16/2015 at 10:42 PM