ID:

dvi_18035

 Coordinate:

scaffold_13049:2273483-2273633 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.6 -6.6 -6.6

Flybase annnotation

exon [dvir_GLEANR_12500:7]; CDS [Dvir\GJ12538-cds]; intron [Dvir\GJ12538-in]

Repeatable elements

NameClassFamilyStrand
(TTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCACAATGGAGAAGAATGGAGATGCAGGCAAGGAGGCGGAGGGCAGCGAAGTAAGTGGCGGCGAATCTATGCTGGTGCTGGCCACCAAACGTAATTCGCTCAGTGAATTTCTTGTTGCTAACAATGTAAACGCTTTAATTAACCCACTGACAACGGCAACAACAACTACAACAATAACCACGACAACAATAACCGCGACGACAACAACAACAACGCCGCCGCCGCCGCCTGCAGCAGCAGCAGCAGCTGGA
**************************************************************************************************.((((((..((..(((..((.............))..)))..))..))))))......*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 SRR060664
9_males_carcasses_total
 SRR060679
140x9_testes_total
 V053
head
 SRR060672
9x160_females_carcasses_total
 M027
male body		 SRR060662
9x160_0-2h_embryos_total
 M061
embryo
 SRR060666
160_males_carcasses_total
 SRR060663
160_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060654
160x9_ovaries_total
 SRR060667
160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060678
9x140_testes_total
 SRR060680
 9xArg_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR1106727
larvae
 V047
embryo
 SRR060661
160x9_0-2h_embryos_total
 SRR060659
Argentina_testes_total
 SRR060675
140x9_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
...................................................................................................................................................................................................CGACGACAACAACAACAACGC................................... 21 0 1 2.00 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................CTCAGTGAATTTCTTGTTGCT.................................................................................................................................... 21 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................TAATTAACCCACTGACAACGG............................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................CGAATCTATGGTGGTGGT............................................................................................................................................................................ 18 2 3 1.00 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................GCTAACAATGTAAACGCTTT................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GTAAACGCTTTAATTAACCCA......................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................CGGAGGACTGCGACGTAAGT................................................................................................................................................................................................... 20 3 2 1.00 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................GCAGGCAAGGAGGCGGAGGGCAGC............................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ACAACAATAGCCGCGACGACA................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CCACGACAACAATAGCCGCGA..................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...CAATGGAGAGGAATGGAGATGC.................................................................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..ACAATGGAGAAGAATGGAGAT.................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................GAGGACTGCGAAGTAAGT................................................................................................................................................................................................... 18 2 5 1.00 5 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
....................GATGCAGGCAAGGATGCGGAGGGC............................................................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................GCGGCGAATCTATGCTGGTGCTGGCC........................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................GCGAGGTAAGTGGCGGCGAAT......................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......GGAGAAGAATGGAGATGCA................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........GAAGAATGGAGATGCAGG............................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................CACTGACAACGGCAACAAC........................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.TGCAATGGAGAAGAATGGAGA..................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TGGCCACCAAGCGTAATTCGC........................................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GCAGGCAAGGAGGCGGAGG................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AACAACAACAACGCCGCCGCC............................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................AGTGGCGGCGAATCTATGCTGGT............................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CACCACGACAACAATAACCGCGACGAC................................................. 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................CGCTCAGTGAATTTCTTGTTG...................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................GCAAGGATGCGGAGGGCAGC............................................................................................................................................................................................................ 20 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GAGATGCAGGCAGGGAGGCGG.................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................GTCTATGCTGGTGCTGGCCGC...................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................AGGCAAGGAGGCGGAGGGC............................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........GAAGAATGGTGATCCAGGC.............................................................................................................................................................................................................................. 19 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........AAGAATGGAGATGCAGGCAAG........................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........AGAAGAATGGAGATGCAGGCAA............................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TTAACCCACTGACAACGGCAA............................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................AAGGAGGGGGAGGGCAGC............................................................................................................................................................................................................ 18 1 2 1.00 2 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AACGCCGCCGCCGCCGCCTGC................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TTAATTAACCCACTGACAACG................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................AAGGAGGCGGAGGGCAGCGAA......................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ACAACAACGCCGCCGCCGCCG........................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................GAGGGCTGCGACGTAAGT................................................................................................................................................................................................... 18 2 5 0.80 4 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................CGACAGCAATAGCCGCGACGA.................................................. 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CTGCAGCAGCAGCAGCAGCTGG. 22 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ACAACAACAGCAACGCCGCCG.............................. 21 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GAAAGGAGGGGGAGGGCAGC............................................................................................................................................................................................................ 20 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................CTGAGGGCTGCGACGTAAGT................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CGGGGCATCGATGCTGGTGC............................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GGGGAAGAATGGGGATGC.................................................................................................................................................................................................................................. 18 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CAACAACAACAACGCTGCCGGC............................ 22 2 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................CTATGCTGGTTCTGGGCA....................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................CTCGAATCTATGGTGGTG.............................................................................................................................................................................. 18 3 20 0.10 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........GAAGAATGGCGATCCAGTC.............................................................................................................................................................................................................................. 19 3 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........GAAGTATGGTGATACAGGC.............................................................................................................................................................................................................................. 19 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........GACGTATGGAGATCCAGGC.............................................................................................................................................................................................................................. 19 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........GAAGTATGGAGATACAGCC.............................................................................................................................................................................................................................. 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................CGGAGGACTGCGACGTAA..................................................................................................................................................................................................... 18 3 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TAATGCGCCCAGTGAATAT............................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................GAATCTATGGTGGTGGTGC.......................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TAATTCGCGCGGTGAATGT............................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGTGTTACCTCTTCTTACCTCTACGTCCGTTCCTCCGCCTCCCGTCGCTTCATTCACCGCCGCTTAGATACGACCACGACCGGTGGTTTGCATTAAGCGAGTCACTTAAAGAACAACGATTGTTACATTTGCGAAATTAATTGGGTGACTGTTGCCGTTGTTGTTGATGTTGTTATTGGTGCTGTTGTTATTGGCGCTGCTGTTGTTGTTGTTGCGGCGGCGGCGGCGGACGTCGTCGTCGTCGTCGACCT
***********************************************************************************************.((((((..((..(((..((.............))..)))..))..))))))......************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 SRR060673
9_ovaries_total
 M028
head
 SRR060660
Argentina_ovaries_total
 M027
male body		 SRR060655
9x160_testes_total
 SRR060657
140_testes_total
 SRR060659
Argentina_testes_total
 SRR060665
9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060677
Argx9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060683
160_testes_total
 V053
head
 V047
embryo
....................................................................................................................CGATTGTTACATTTGCGAAAT.................................................................................................................. 21 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTATTGGTGCTGTTGTTATTG.......................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................GGCCGGTGGTTTGCATTAAGC......................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTCACCGCCGCTTAGATACGA.................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................CGACCACGGCCGGTGGTTTGC................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................CGTCGCTTCGTTCACCGCCGC............................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................CCTCCCGTCGCTTCATTCACC................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........CTTCTTACCTCTACGTCCGT............................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................CTTAGGTACGACCACGACC.......................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................CCGCCGCTTAGGTACGACCAC.............................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................ATTGTTACATTTGCGAAATTA................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................GAGTCACTTAAAGAACAACGG.................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................CTTGTTATTGGTGCTGTTGT............................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................GTTGTTATTGGCGCTGCTGTT............................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TTGCGAAATTAGTTGGGTGGCT..................................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTGGTTTGCATTGAGCGAGTC.................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GTTACATTTGCGAAAGTAAT.............................................................................................................. 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................GCTTCATTCACCGCCGCTT.......................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TGGTTTGCATTAAGCGAGTCA................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................AGCGAGTCACTTAAAGGACAA....................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................GCTTCATTCACCGCCGCTTAG........................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TTGCGAAATTAGTTGGGTGAC...................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GGTGGTTTGCATTAAGCGA....................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AAGAACAACGATTGTTACATT.......................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................GGGTGACTGTTGCCGTTGTTG........................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................ACGATTGTTACATTTGCGAAA................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........TTCTTACCTCTACGTCCGTTC........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................AATTGGGTGACTGTTGCCGTT............................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................AGTTGGGTGACTGTTGCCGTT............................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGCGAAATTAATTGGGTGGCT..................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TACCGCCGCTTAGATACGACCA............................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................TATTGGCGCTGCTGTTGTTGTT......................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GGTGGTTTGCGTTAAGCGAGT..................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CTTATTGGTGCTGTTGTTATT........................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................ACTGTTGCCATTGTTGTTGAT................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................GTCGCTTCGTTCGCCGCCGCT........................................................................................................................................................................................... 21 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGCGAAGTTAGTTGGGTGGCT..................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CCGTTGTTGTTGATGTTGTT............................................................................. 20 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CGTTGTTGTTGTTGCGGCGG............................... 20 1 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................GCCGCGGCGGCGGACGACGTC.............. 21 2 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GCCGTTGTAGTTGCTGCGGCGG............................... 22 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................TGACATTTGCTAGATTAATTG............................................................................................................ 21 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................TGTTCTAGTTGTTGCGGGGG............................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:2273433-2273683 - dvi_18035 GCA---CAATGGAGAAGAATGGAGA-------------TGCAGGCAAGGAGGC---------------------GG---AG---GGCAGCGAAGTAAGTGGCGGC------GAATCTATGCTGGTGCTGGCCACCAAACGTAATTCGCTCAGTGAATTTCTTGTTGCTAACAATGTAAACGCTTTAATTAA---CCCACTGACAACGGCAACA---------------------------------------------------------ACAA------CTACAACAATA---ACCACGACAACAATAACCGCGAC---------------------------------------GACAACAACAACAACGCCGCCGCCGCCGCC-----------TGC------------------AGCAG------C---AGCAGCAGCT---------------------------------------GG-A
droMoj3 scaffold_6654:1591027-1591285 + dmo_2271 AAA---CATTGGAAAAGACCGGCGA-------------TGCC---AAGGACGC----G-----------------GACGCT---GGCAGCGAAGTAAGTGGCGATACTAACAATG---TGGTGCTGGCCACCACCAAACGTAACTCGCTAAGTGAATTTCTTGTTGCTAACAATGTGACCGCTTTGATTAATAACCCACTGACAATGCCAACA------------------------------------------------------------A------TAACAACAACAACAACAACAACCACATCAACTACGAT---------------T---------CTAACAACAACAACGATAACGA---CAACAACGCCGCCGCCTCCTGCGAC--------------AGCAGC--------------------------------------------------------------------------
droGri2 scaffold_15110:3310083-3310303 - AAA---CGATGGAGAAGAATGGCGGCGGCGCCGATGGATGC-AGCAAGGATGC----ACCAGCAGCAGCCAA--GG---ATGGCGGCAGTGAAGTAAGTGGCGAGACAGCCAGTC---TGATGCTGGTGGTTAACAAACGTAATTCGCTAAATGAATTCCTTGTTGCTAACAATGTAACCGCTTTAATTAA---CCCACTGACAACCACAACA------------------------------------------------------------A---CAATGACGA---------------------------------------------------------------------------------CAAAACT--------------------------------------------------------------AATCACA---------------------------------------AG-C
droWil2 scf2_1100000004511:860254-860599 - dwi_474 AGA---CTATGGAGAAGAATGGCGA-------------TGCTAAGAAGGATGC----G---------TCCAA--GG---AT---GGTAGCGAAGTAAGTGGCAGC------GAACTAATCATGGTGACGGCTTCTAAACGTAACTCGCTAAGTGAATTTCTTGTTGCTAACAATGTAACCGCTTTAATTAA---CCCATTGGCGGCGGCGGCG---------GTGGCGACGGCGGCGTCGGCGTCGTTATTGACGACGACAGCAGCAACATCGA------CTACGACAGCA---ACAACGACAACGACGACAGCGACATCAACAGCAACGACAGGGACAACGACAGCAATAGCAACAACAACTA---CAACTCCTCCGCCTCCAACGGCTGTGATACATCCGC---------------------------------AACTATT---------------------------------------GG-A
dp5 XR_group6:7802851-7803097 - dps_3091 AGA---CTATGGAGAAGAACGGAGA-------------CGTCAGCAAGGACTC----T---------GCCAA--GG---AG---GGCAGTGAAGTAAGTGGCAAC------GAAC------TGGTGACGGCTACTAAACGTAATTCGCTAAGTGAATTCCTTGTTGCTAACAATGTAACCGCTTTGATTAA---CCCATTGACAACGACAACG------------------------------------------------------------A------CTACGA---------------------------------------------------------------------------------CAACACCCCCGCCACTCATGGCTGTGATCCTACCGCTGGCACAGCCACATCCGCAG------C---TAC------A----------------GGAGCAGAAGCCGCA--------GC-A
droPer2 scaffold_27:652464-652710 + AGA---CTATGGAGAAGAACGGAGA-------------CGCCAGCAAGGACTC----T---------GCCAA--GG---AG---GGCAGTGAAGTAAGTGGCAAC------GAAC------TGGTGACGGCTACTAAACGTAATTCGCTAAGTGAATTCCTTGTTGCTAACAATGTAACCGCTTTGATTAA---CCCATTGACAACGACAACG------------------------------------------------------------A------CTACGA---------------------------------------------------------------------------------CAACACCCCCGCCACTCATGGCTGTGATCCTACCGCAGGCACAGCCACATCCGCAG------C---TAC------A----------------AGAGCAGAAGCCGCA--------GC-A
droAna3 scaffold_13337:1181058-1181283 + GGA---CCATGGAGAAG-------------------------------GACCCCTCGG---------GCCGAGCAG---AT---GGCAGCGAAGTAAGTGGCAGC------GACC------CGGTGATGGCTAACAAACGTAACTCGCTAAACGAATTCCTTGTTGCTAACAACGTGACCGCTTTGATTAA---CCAACCACCCACCATAGCGGCTGCTCTGCCGCAG--------------------------------------------------------AA---------------------------------------------------------------------------------C----------------------------------GTGGCGCCGCGCAAGGAGCAG------G---CACTGCTGCCAAATCCAGAGCCTCGG---------------CCACATCCGG-A
droBip1 scf7180000396371:1513605-1513830 + GGA---CAATGGAAAAG-------------------------------GACCCCTCTG---------GGCGTTCCG---AT---GGCAACGAAGTAAGTGGCAGC------GACC------AGGTGACGGCCAACAAACGTAACTCGCTAAACGAATTCCTTGTTGCTAACAACGTGACCGCTTTGATTAA---CCCACCACCGACCATAGCG------------------------------------------------------------GCTGC---------------------------------------------------------------------------------------------------------TCTGGCGCAGGAT------GTGGCGCCGCGCAAGGAGCAG------G---CACTGCTGCCAAATCCAGAACCTCGG---------------CCACATCCGG-A
droKik1 scf7180000302577:129086-129305 - GGAGCACCATGGAGAAG-------------------------------GACCC----G---------GCCAA--AG---AG---GGCAGCGATGTAAGTGGAAGC------GACT------TGCTGGCAACTACCAAACGTAACTCGCTAAGCGAATTCCTTGTTGCTAACAATGTGACCGCCTTGATTAA---CCCACTGACCACGACCACG------------------------------------------------------------C------CC------------------------------------------------------------CCGACCATGATAATGACAGCGA---CCACGCCACCGCCGCCCATGGTGGT------GCCGCAGGAACAGC------------------------AGCGAAG---------------------------------------GG-A
droFic1 scf7180000454113:424229-424439 + GGA---TTATGGAGAAA-------------------------------GACCC----G------GCAGCTAA--GG---AG---GGCAGCGAAGTAAGTGGCAGC------GACC------TGGTGACGACTACAAAACGTAACTCGCTAAGCGAATTCCTCGTTGCTAACAATGTGACCGCTTTGATTAA---CCCACTGACAACGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------CACGCCCCCGCCGCCCCTGGCGGTTATCCTGCCGGTGGAGCAGCGCAAGGAGCCG------G---GTCAGCTGCC---------------------------------------GG-A
droEle1 scf7180000491249:3916173-3916384 + GGA---TCATGGAGAAG-------------------------------GACCC----G---------GCCAA--GG---AGGGCAGCGGCGAAGTAAGTGGCAGC---GGCGACC---TACTACCGACCGCTACTAAACGTAACTCGCTAAGCGAATTCCTTGTTGCTAACAATGTGACCGCTTTGATTAA---CCCACTGACAACGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------CACGCCCCCGCCGCCCCTGGCGGTTATACTTCCGCTGGAGCAGCCCAAGGAGCGG------G---------------AACG--------------------------------TGA-A
droRho1 scf7180000776850:288368-288584 + GGA---TCATGGAGAAG-------------------------------GACCC----G---------GCCAA--GG---AG---GGCAGCGAAGTAAGTGGCAGC------GACC------TAGTGACGGCTACTAAACGTAACTCGCTAAGCGAATTCCTTGTTGCTAACAATGTGACCGCATTGATTAA---CCCACTGACAACGACCACG------------------------------------------------------------CTAACGCTGACAA---------------------------------------------------------------------------------CCACGCCCCCGCCGCCCTTGGCGGTGATCCTGCCGCTGGAGCAGCACAAGGAGCAG------G---TGC-------------------------------------------------A
droBia1 scf7180000300910:1778440-1778656 - GGA---TCATGGAGAAG-------------------------------GACCC----G---------GCCAA--AG---AG---GGCAACGAAGTAAGTGGCAGC------GACC------TGGTGACGGCTACTAAACGTAACTCGCTAAGCGAATTCCTTGTTGCTAACAATGTGACCGCTTTGATTAA---CCCACTGACAACGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------CACGCCCCCGCCGCCCTTGGCGGTCATCCTGCCGCTGGAGCAGCGCAAGGAGTCG------CCGGCGCCGCTGCGGGATC---------------------------------CGG-A
droTak1 scf7180000415095:113080-113309 + GGA---TTATGGAAAAG-------------------------------GACCC----C---------ACCAA--GG---AG---GGCAGCGAAGTAAGTGGCAGT---GGCGACC------TGGTGACGGCTACCAAACGTAACTCGCTAAGCGAATTCCTTGTGGCTAACAATGTGACCGCTTTGATTAACAACCCACTGACAACGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------CACGCCCCCGCCGCCCTTGGCGGTCATCCTGCCGCTGGAGCCGCGAAAGGAGCCGGAGCAGTCGGAGCAGCTGT--------------------------------CCGTGTCTGT-G
droEug1 scf7180000409007:477392-477599 - GGA---TTATGGAAAAG-------------------------------GACCC----G---------GCCAA--AG---AG---GGCAGCGAAGTAAGTGGCAGC------GAAC------TGCTGACGGCTACTAAACGTAACTCGCTAAACGAATTCCTTGTTGCTAACAATGTGACTGCTTTGATTAA---CCCACTGACAACGACCCCG------------------------------------------------------------CTAACGCTGACAA---------------------------------------------------------------------------------CTACGCCGCCGCCTCCCTTGGCGGTGATCTTACCGCTGGATCAGCGCAAGGA-------------------------------------------------------------------
dm3 chr3L:1656491-1656716 - AGA---TCATGGAGAAA-------------------------------GACCC----G---------GCCAA--AG---AG---GGTAGCGAAGTAAGTGGCAGT------GACC------AGGTGACGGCTACCAAACGTAACTCGCTAAGCGAATTCCTTGTTGCTAACAACGTGACCGCTTTAATTAA---CACACTGACTACAACCACG------------------------------------------------------------GTAACACTAACGA---------------------------------------------------------------------------------CGACGCCCCCGCCGCCTTTGGCGGTGGTTGTGCCGCTGGAGCAGCGCCAGGAGCAG------C---CTCAGCAGCG---------------------------------------GG-A
droSim2 3l:1566269-1566504 - dsi_2477 AGA---TCATGGAGAAA-------------------------------GACCC----G---------GCCAA--AG---AG---GGTAGCGAAGTAAGTGGCAGT------GACC------AGGTGACGGCTACCAAACGTAACTCGCTAAGCGAATTCCTTGTTGCTAACAACGTGACCGCTTTGATTAA---CACACTGACTACAACAACG------------------------------------------------------------GTAACACTGACAA---------------------------------------------------------------------------------CGACGCCCCCGCCGCCTTTGGCGGTGATTGTGCCGCTGGAGCAGCGCCAGGAGCAG------C---CTCAGCAGCGGGATCCTGA------------------------------TCGA
droSec2 scaffold_2:1682678-1682903 - AGA---TCATGGAGAAA-------------------------------GACCC----G---------GCCAA--AG---AG---GGTAGCGAAGTAAGTGGCAGT------GACC------AGGTGACGGCTACCAAACGTAACTCGCTAAGCGAATTCCTTGTTGCTAACAACGTGACCGCTTTGATTAA---CACACTGACTACAACAACG------------------------------------------------------------GTAACACTGACAA---------------------------------------------------------------------------------CGACGCCCCCGCCGCCCTTGACGGTGATTGTGCCGCTGGAGCAGCGTCAGGAGCAG------C---CTCAGCAGCG---------------------------------------GG-A
droYak3 3L:1607165-1607390 - AGA---TCATGGAGAAA-------------------------------GACCC----G---------GCCAA--AG---AG---GGTAGCGAAGTAAGTGGCAGC------GACC------TGGTGACGGCTACTAAACGTAACTCGCTAAGCGAATTCCTTGTTGCTAACAACGTGACCGCTTTGATTAA---CCCACTGACTACAACCACG------------------------------------------------------------CTAACACTAACGA---------------------------------------------------------------------------------CGACGCCCCCGCCGCCTCTGGCGGTGATTCTGCCGCTGGATCAGCGCCAGGAGCAG------C---CTCTGCTGCG---------------------------------------GG-A
droEre2 scaffold_4784:1636080-1636305 - AGA---TCATGGAGAAA-------------------------------GACCC----G---------GCCAA--AG---AG---GGCAGCGAAGTAAGTGGCAGC------GACC------TGGTGACGGCTACTAAACGTAACTCGCTAAGCGAATTCCTTGTTGCTAACAACGTGACCGCTTTGATTAA---CCCACTGACTACAACCCCG------------------------------------------------------------CTAACACTAACGA---------------------------------------------------------------------------------CGACGCCCCCGCCGACTTTGGCGGCGATACTGCCGCTGGATGAGCACCAGGAGCAG------C---CTCTGCTGCG---------------------------------------AG-A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GCA---CAATGGAGAAGAATGGAGA-------------TGCAGGCAAGGAGGC---------------------GG---AG---GGCAGCGAAGTAAGTGGCGGC------GAATCTATGCTGGTGCTGGCCACCAAACGTAATTCGCTCAGTGAATTTCTTGTTGCTAACAATGTAAACGCTTTAATTAA---CCCACTGACAACGGCAACA---------------------------------------------------------ACAA------CTACAACAATA---ACCACGACAACAATAACCGCGAC---------------------------------------GACAACAACAACAACGCCGCCGCCGCCGCC-----------TGC------------------AGCAG------C---AGCAGCAGCT---------------------------------------GG-ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................CGAC---------------------------------------GACAACAACAACAACGC.................................................................................................................2112.002100000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................CTCAGTGAATTTCTTGTTGCT..............................................................................................................................................................................................................................................................................................................................2112.002000000000000001000000000000000000000000000000000000000010000000
........................................................................................................................................................................................TAATTAA---CCCACTGACAACGG......................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................GCTAACAATGTAAACGCTTT.............................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................GTAAACGCTTTAATTAA---CCCA................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
.......................................GCAGGCAAGGAGGC---------------------GG---AG---GGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
..A---CAATGGAGAAGAATGGAGA-------------T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................GCGGC------GAATCTATGCTGGTGCTGGCC..................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000001
..........GGAGAAGAATGGAGA-------------TGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000001000000000000000000000000000
.............GAAGAATGGAGA-------------TGCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................CACTGACAACGGCAACA---------------------------------------------------------AC......................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......................................GCAGGCAAGGAGGC---------------------GG---AG---G.................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACGCCGCCGCC..........................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
................................................................................................AGTGGCGGC------GAATCTATGCTGGT.........................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................CGCTCAGTGAATTTCTTGTTG................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
.........................................AGGCAAGGAGGC---------------------GG---AG---GGC...............................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000010000000000000000000000000000000000000000
..............AAGAATGGAGA-------------TGCAGGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
............AGAAGAATGGAGA-------------TGCAGGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TTAA---CCCACTGACAACGGCAA...................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................AACGCCGCCGCCGCCGCC-----------TGC------------------....................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................TTAATTAA---CCCACTGACAACG.......................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.............................................AAGGAGGC---------------------GG---AG---GGCAGCGAA.........................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................ACAACAACGCCGCCGCCGCCG......................................................................................................2111.001000000000000000010000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................C-----------TGC------------------AGCAG------C---AGCAGCAGCT---------------------------------------GG-.2220.501001000000000000000000000000000000000000000000000000000000000000
droMoj3
AAA---CATTGGAAAAGACCGGCGA-------------TGCC---AAGGACGC----G-----------------GACGCT---GGCAGCGAAGTAAGTGGCGATACTAACAATG---TGGTGCTGGCCACCACCAAACGTAACTCGCTAAGTGAATTTCTTGTTGCTAACAATGTGACCGCTTTGATTAATAACCCACTGACAATGCCAACA------------------------------------------------------------A------TAACAACAACAACAACAACAACCACATCAACTACGAT---------------T---------CTAACAACAACAACGATAACGA---CAACAACGCCGCCGCCTCCTGCGAC--------------AGCAGC--------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................CTTTGATTAATAACCCACTGAC...........................................................................................................................................................................................................................................................................................2211.001100000
....................................................................................GGCAGCGAAGTAAGTGGCGATACTAAC.......................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
droGri2
AAA---CGATGGAGAAGAATGGCGGCGGCGCCGATGGATGC-AGCAAGGATGC----ACCAGCAGCAGCCAA--GG---ATGGCGGCAGTGAAGTAAGTGGCGAGACAGCCAGTC---TGATGCTGGTGGTTAACAAACGTAATTCGCTAAATGAATTCCTTGTTGCTAACAATGTAACCGCTTTAATTAA---CCCACTGACAACCACAACA------------------------------------------------------------A---CAATGACGA---------------------------------------------------------------------------------CAAAACT--------------------------------------------------------------AATCACA---------------------------------------AG-CSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AGA---CTATGGAGAAGAATGGCGA-------------TGCTAAGAAGGATGC----G---------TCCAA--GG---AT---GGTAGCGAAGTAAGTGGCAGC------GAACTAATCATGGTGACGGCTTCTAAACGTAACTCGCTAAGTGAATTTCTTGTTGCTAACAATGTAACCGCTTTAATTAA---CCCATTGGCGGCGGCGGCG---------GTGGCGACGGCGGCGTCGGCGTCGTTATTGACGACGACAGCAGCAACATCGA------CTACGACAGCA---ACAACGACAACGACGACAGCGACATCAACAGCAACGACAGGGACAACGACAGCAATAGCAACAACAACTA---CAACTCCTCCGCCTCCAACGGCTGTGATACATCCGC---------------------------------AACTATT---------------------------------------GG-ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................GATGC----G---------TCCAA--GG---AT---GGT...............................................................................................................................................................................................................................................................................................................................................................................................................1812.00200020
........................................................................................................................................................................................................................................................ATTGACGACGACAGCAGCAACATCGA------..............................................................................................................................................................................................................2611.00100100
.......................................GCTAAGAAGGATGC----G---------TCCAA--GG---AT---..................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
................GAATGGCGA-------------TGCTAAGAAGGATGC----G---------TC.................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
.....................GCGA-------------TGCTAAGAAGGATGC----G---------TC.................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
............................................................................................AGTAAGTGGCAGC------GAACTAATCATGGT.........................................................................................................................................................................................................................................................................................................................................................................2711.00100100
..........................................AAGAAGGATGC----G---------TCCAA--GG---AT---GGT...............................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
........................................CTAAGAAGGATGC----G---------TCCAA--GG---AT---GGT...............................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
..........................................................................................................................................................................................................CGGCGGCGGCG---------GTGGCGA.................................................................................................................................................................................................................................................................1850.20100010
.................................................................................................................................................................................................................................................................................................CA---ACAACGACAACGACGA................................................................................................................................................................................18150.07100010
........................................................................................................................................................................................................GGCGGCGGCGGCG---------GTGGCG..................................................................................................................................................................................................................................................................19200.05101000
dp5
AGA---CTATGGAGAAGAACGGAGA-------------CGTCAGCAAGGACTC----T---------GCCAA--GG---AG---GGCAGTGAAGTAAGTGGCAAC------GAAC------TGGTGACGGCTACTAAACGTAATTCGCTAAGTGAATTCCTTGTTGCTAACAATGTAACCGCTTTGATTAA---CCCATTGACAACGACAACG------------------------------------------------------------A------CTACGA---------------------------------------------------------------------------------CAACACCCCCGCCACTCATGGCTGTGATCCTACCGCTGGCACAGCCACATCCGCAG------C---TAC------A----------------GGAGCAGAAGCCGCA--------GC-ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................AGTGGCAAC------GAAC------TGGTGACGGCTAC................................................................................................................................................................................................................................................................................................................................................................2612.0020000000200
........................................TCAGCAAGGACTC----T---------GCCAA--GG---AG---GGC...............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCAG------C---TAC------A----------------GGAGCA.....................1911.0010100000000
.........TGGAGAAGAACGGAGA-------------CGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000010
...................CGGAGA-------------CGTCAGCAAGGACTC----T---------GC.................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...........................................GCAAGGACTC----T---------GCCAA--GG---AG---GGCA..............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000001
........ATGGAGAAGAACGGAGA-------------CGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
......CTATGGAGAAGAACGGAGA-------------CGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000001
..............................................................................................................................................................................................................................................................................................................................................................................................TCATGGCTGTGATCCTACCGC...................................................................................2111.0010100000000
.........................................................T---------GCCAA--GG---AG---GGCAGTGAACCC......................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010000
.........................................................................................................................................................................................................................................................................................................................................................................................GCCACTCATGGCTGTGATCC.........................................................................................2011.0010100000000
...........................................GCAAGGACTC----T---------GCCAA--GG---AG---G.................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................C------TGGTGACGGCTACTAAACGT.........................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
droPer2
AGA---CTATGGAGAAGAACGGAGA-------------CGCCAGCAAGGACTC----T---------GCCAA--GG---AG---GGCAGTGAAGTAAGTGGCAAC------GAAC------TGGTGACGGCTACTAAACGTAATTCGCTAAGTGAATTCCTTGTTGCTAACAATGTAACCGCTTTGATTAA---CCCATTGACAACGACAACG------------------------------------------------------------A------CTACGA---------------------------------------------------------------------------------CAACACCCCCGCCACTCATGGCTGTGATCCTACCGCAGGCACAGCCACATCCGCAG------C---TAC------A----------------AGAGCAGAAGCCGCA--------GC-ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................GA-------------CGCCAGCAAGGACTC----T---------GCC................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
...............................................................................................................................................................................................................................................................................................................................................................................................CATGGCTGTGATCCTACCGCAGGCACG............................................................................2711.001100000
droAna3
GGA---CCATGGAGAAG-------------------------------GACCCCTCGG---------GCCGAGCAG---AT---GGCAGCGAAGTAAGTGGCAGC------GACC------CGGTGATGGCTAACAAACGTAACTCGCTAAACGAATTCCTTGTTGCTAACAACGTGACCGCTTTGATTAA---CCAACCACCCACCATAGCGGCTGCTCTGCCGCAG--------------------------------------------------------AA---------------------------------------------------------------------------------C----------------------------------GTGGCGCCGCGCAAGGAGCAG------G---CACTGCTGCCAAATCCAGAGCCTCGG---------------CCACATCCGG-ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GGA---CAATGGAAAAG-------------------------------GACCCCTCTG---------GGCGTTCCG---AT---GGCAACGAAGTAAGTGGCAGC------GACC------AGGTGACGGCCAACAAACGTAACTCGCTAAACGAATTCCTTGTTGCTAACAACGTGACCGCTTTGATTAA---CCCACCACCGACCATAGCG------------------------------------------------------------GCTGC---------------------------------------------------------------------------------------------------------TCTGGCGCAGGAT------GTGGCGCCGCGCAAGGAGCAG------G---CACTGCTGCCAAATCCAGAACCTCGG---------------CCACATCCGG-ASizeHit CountTotal NormTotal
No Reads
droKik1
GGAGCACCATGGAGAAG-------------------------------GACCC----G---------GCCAA--AG---AG---GGCAGCGATGTAAGTGGAAGC------GACT------TGCTGGCAACTACCAAACGTAACTCGCTAAGCGAATTCCTTGTTGCTAACAATGTGACCGCCTTGATTAA---CCCACTGACCACGACCACG------------------------------------------------------------C------CC------------------------------------------------------------CCGACCATGATAATGACAGCGA---CCACGCCACCGCCGCCCATGGTGGT------GCCGCAGGAACAGC------------------------AGCGAAG---------------------------------------GG-ASizeHit CountTotal NormTotal
No Reads
droFic1
GGA---TTATGGAGAAA-------------------------------GACCC----G------GCAGCTAA--GG---AG---GGCAGCGAAGTAAGTGGCAGC------GACC------TGGTGACGACTACAAAACGTAACTCGCTAAGCGAATTCCTCGTTGCTAACAATGTGACCGCTTTGATTAA---CCCACTGACAACGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------CACGCCCCCGCCGCCCCTGGCGGTTATCCTGCCGGTGGAGCAGCGCAAGGAGCCG------G---GTCAGCTGCC---------------------------------------GG-ASizeHit CountTotal NormTotal
No Reads
droEle1
GGA---TCATGGAGAAG-------------------------------GACCC----G---------GCCAA--GG---AGGGCAGCGGCGAAGTAAGTGGCAGC---GGCGACC---TACTACCGACCGCTACTAAACGTAACTCGCTAAGCGAATTCCTTGTTGCTAACAATGTGACCGCTTTGATTAA---CCCACTGACAACGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------CACGCCCCCGCCGCCCCTGGCGGTTATACTTCCGCTGGAGCAGCCCAAGGAGCGG------G---------------AACG--------------------------------TGA-ASizeHit CountTotal NormTotal
No Reads
droRho1
GGA---TCATGGAGAAG-------------------------------GACCC----G---------GCCAA--GG---AG---GGCAGCGAAGTAAGTGGCAGC------GACC------TAGTGACGGCTACTAAACGTAACTCGCTAAGCGAATTCCTTGTTGCTAACAATGTGACCGCATTGATTAA---CCCACTGACAACGACCACG------------------------------------------------------------CTAACGCTGACAA---------------------------------------------------------------------------------CCACGCCCCCGCCGCCCTTGGCGGTGATCCTGCCGCTGGAGCAGCACAAGGAGCAG------G---TGC-------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droBia1
GGA---TCATGGAGAAG-------------------------------GACCC----G---------GCCAA--AG---AG---GGCAACGAAGTAAGTGGCAGC------GACC------TGGTGACGGCTACTAAACGTAACTCGCTAAGCGAATTCCTTGTTGCTAACAATGTGACCGCTTTGATTAA---CCCACTGACAACGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------CACGCCCCCGCCGCCCTTGGCGGTCATCCTGCCGCTGGAGCAGCGCAAGGAGTCG------CCGGCGCCGCTGCGGGATC---------------------------------CGG-ASizeHit CountTotal NormTotal
No Reads
droTak1
GGA---TTATGGAAAAG-------------------------------GACCC----C---------ACCAA--GG---AG---GGCAGCGAAGTAAGTGGCAGT---GGCGACC------TGGTGACGGCTACCAAACGTAACTCGCTAAGCGAATTCCTTGTGGCTAACAATGTGACCGCTTTGATTAACAACCCACTGACAACGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------CACGCCCCCGCCGCCCTTGGCGGTCATCCTGCCGCTGGAGCCGCGAAAGGAGCCGGAGCAGTCGGAGCAGCTGT--------------------------------CCGTGTCTGT-GSizeHit CountTotal NormTotal
No Reads
droEug1
GGA---TTATGGAAAAG-------------------------------GACCC----G---------GCCAA--AG---AG---GGCAGCGAAGTAAGTGGCAGC------GAAC------TGCTGACGGCTACTAAACGTAACTCGCTAAACGAATTCCTTGTTGCTAACAATGTGACTGCTTTGATTAA---CCCACTGACAACGACCCCG------------------------------------------------------------CTAACGCTGACAA---------------------------------------------------------------------------------CTACGCCGCCGCCTCCCTTGGCGGTGATCTTACCGCTGGATCAGCGCAAGGA-------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AGA---TCATGGAGAAA-------------------------------GACCC----G---------GCCAA--AG---AG---GGTAGCGAAGTAAGTGGCAGT------GACC------AGGTGACGGCTACCAAACGTAACTCGCTAAGCGAATTCCTTGTTGCTAACAACGTGACCGCTTTAATTAA---CACACTGACTACAACCACG------------------------------------------------------------GTAACACTAACGA---------------------------------------------------------------------------------CGACGCCCCCGCCGCCTTTGGCGGTGGTTGTGCCGCTGGAGCAGCGCCAGGAGCAG------C---CTCAGCAGCG---------------------------------------GG-ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................CG------------------------------------------------------------GTAACACTAACGA---------------------------------------------------------------------------------CGACGC.................................................................................................................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGAAA-------------------------------GACCC----G---------GCCAA--AG---AG---GGT...............................................................................................................................................................................................................................................................................................................................................................................................................2317.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGCCGCTGGAGCAGCGC........................................................................2116.0060000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000010000
.................................................................................................................................................................................................................................................................................GTAACACTAACGA---------------------------------------------------------------------------------CGACGCCCCCG............................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TGGCAGT------GACC------AGGTGACGGC...................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGCCGCTGGAGCAGCGCC.......................................................................2212.0020000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TGCCGCTGGAGCAGCGCCAGG....................................................................2112.0020000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
...........................................................................G---AG---GGTAGCGAAGTAAGTGGC................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...................................................................GCCAA--AG---AG---GGTAGCGAA.........................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
AGA---TCATGGAGAAA-------------------------------GACCC----G---------GC.................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TGGTTGTGCCGCTGGAGCAGC..........................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................GGTAGCGAAGTAAGTGGCAGT------.......................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................GGCAGT------GACC------AGGTGACGGCTA.................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................CAA--AG---AG---GGTAGCGAAGT.......................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................AAGTGGCAGT------GACC------AGGTGAC......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................................................................................................................................................................................................CTGACTACAACCACG------------------------------------------------------------GTAACACTA............................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................ACCC----G---------GCCAA--AG---AG---GGTAGCGA..........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................GTGCCGCTGGAGCAGCGCCAGG....................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TTTGGCGGTGGTTGTGCCGCTGGAGC.............................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................................................................................................................................................................................................................................................................GTAACACTAACGA---------------------------------------------------------------------------------CGACGCCC...............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................................................................................................................................................................................CG------------------------------------------------------------GTAACACTAACGA---------------------------------------------------------------------------------CGACG..................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...................................................................................................................................................................................................ACACTGACTACAACCACG------------------------------------------------------------GTA..................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................ACACTAACGA---------------------------------------------------------------------------------CGACGCCCCCG............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGCAG------C---CTCAGCAGCG---------------------------------------G...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AA-------------------------------GACCC----G---------GCCAA--AG---AG---GGTA..............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................TAAGTGGCAGT------GACC------AGGTGA.......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................AACGTGACCGCTTTAATTAA---C...................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................C----G---------GCCAA--AG---AG---GGTAGCG...........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................TTTAATTAA---CACACTGACTAG........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................CACG------------------------------------------------------------GTAACACTAACGA---------------------------------------------------------------------------------CGAC...................................................................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................AGGTGACGGCTACCAAACGTA........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
..A---TCATGGAGAAA-------------------------------GACCC----G---------GCC................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............GAAA-------------------------------GACCC----G---------GCCAA--AG---AG---GGTAGC............................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................CCC----G---------GCCAA--AG---AG---GGTAG.............................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGAAA-------------------------------GACCC----G---------GCCAA--AG---AG---GGG...............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAG------C---CTCAGCAGCG---------------------------------------GG-.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................CTACAACCACG------------------------------------------------------------GTAACACTAA...........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................GCTAAGCGAATTCCTTGTTG................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......CATGGAGAAA-------------------------------GACCC----G---------GCCAA--AG---AG---..................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCAGCGCCAGGAGCAG------C---.....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.....................................................................................................................................................................................CTTTAATTAA---CACACTGACTACA.......................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AAA-------------------------------GACCC----G---------GCCAA--AG---AG---GGTAGC............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGTGCCGCTGGAGCAG...........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGGAGCAGCGCCAGGA...................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGGAGCAG------C---CTCAG................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TACAACCACG------------------------------------------------------------GTAACACTAAC..........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGTGCCGCTGGAGCA............................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
............................................................................................................................................................................................................................................................................................................................................................................................................GTGCCGCTGGAGCAGCGCCAG.....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCCGCTGGAGCAGCGCC.......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GA---TCATGGAGAAA-------------------------------GACCC----G---------GCCAA--............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGCAG------C---CTCAGCAA.............................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGA---TCATGGAGAAA-------------------------------GACCC----G---------GCCAA--AG---AG---GGTAGCGAAGTAAGTGGCAGT------GACC------AGGTGACGGCTACCAAACGTAACTCGCTAAGCGAATTCCTTGTTGCTAACAACGTGACCGCTTTGATTAA---CACACTGACTACAACAACG------------------------------------------------------------GTAACACTGACAA---------------------------------------------------------------------------------CGACGCCCCCGCCGCCTTTGGCGGTGATTGTGCCGCTGGAGCAGCGCCAGGAGCAG------C---CTCAGCAGCGGGATCCTGA------------------------------TCGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................GACGGCTACCAAACGTAACTCGCT.................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
droSec2
AGA---TCATGGAGAAA-------------------------------GACCC----G---------GCCAA--AG---AG---GGTAGCGAAGTAAGTGGCAGT------GACC------AGGTGACGGCTACCAAACGTAACTCGCTAAGCGAATTCCTTGTTGCTAACAACGTGACCGCTTTGATTAA---CACACTGACTACAACAACG------------------------------------------------------------GTAACACTGACAA---------------------------------------------------------------------------------CGACGCCCCCGCCGCCCTTGACGGTGATTGTGCCGCTGGAGCAGCGTCAGGAGCAG------C---CTCAGCAGCG---------------------------------------GG-ASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............AGAAA-------------------------------GACCC----G---------GCCAA--AG---A......................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.............GAAA-------------------------------GACCC----G---------GCCAA--AG---AG---GGT...............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
droYak3
AGA---TCATGGAGAAA-------------------------------GACCC----G---------GCCAA--AG---AG---GGTAGCGAAGTAAGTGGCAGC------GACC------TGGTGACGGCTACTAAACGTAACTCGCTAAGCGAATTCCTTGTTGCTAACAACGTGACCGCTTTGATTAA---CCCACTGACTACAACCACG------------------------------------------------------------CTAACACTAACGA---------------------------------------------------------------------------------CGACGCCCCCGCCGCCTCTGGCGGTGATTCTGCCGCTGGATCAGCGCCAGGAGCAG------C---CTCTGCTGCG---------------------------------------GG-ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................GACTACAACCACG------------------------------------------------------------CTAACACT.............................................................................................................................................................................................................2111.00100100000000
droEre2
AGA---TCATGGAGAAA-------------------------------GACCC----G---------GCCAA--AG---AG---GGCAGCGAAGTAAGTGGCAGC------GACC------TGGTGACGGCTACTAAACGTAACTCGCTAAGCGAATTCCTTGTTGCTAACAACGTGACCGCTTTGATTAA---CCCACTGACTACAACCCCG------------------------------------------------------------CTAACACTAACGA---------------------------------------------------------------------------------CGACGCCCCCGCCGACTTTGGCGGCGATACTGCCGCTGGATGAGCACCAGGAGCAG------C---CTCTGCTGCG---------------------------------------AG-ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................GACCC----G---------GCCAA--AG---AG---GGCAGCGAA.........................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
................................................GACCC----G---------GCCAA--AG---AG---GGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
..........................................................................................................................................................................................................................................................................................................................................................................................................TACTGCCGCTGGATGAGCACC.......................................................................2111.0011000000

Generated: 05/19/2015 at 08:47 PM