ID:

dvi_18018

 Coordinate:

scaffold_13049:2226853-2227132 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.6 -7.3 -7.3 -7.1

Flybase annnotation

CDS [Dvir\GJ12854-cds]; CDS [Dvir\GJ12854-cds]; exon [dvir_GLEANR_12795:2]; exon [dvir_GLEANR_12795:3]; intron [Dvir\GJ12854-in]

Repeatable elements

NameClassFamilyStrand
A-richLow_complexityLow_complexity+
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GGAGCGGCGCTCCATAGACTACGGCGATCATCATGCGAATAAAGTGTCGCGTAAGTAAATTTAAATGCATTTAAATAAGGTCACAAAGTCAGTCAACCCATGGCAACGGTATCTGAATCCGAATCGGAATCGGAACTGCAAAACACGTTTACCACAAAAAAAAAAAAAAATCAATACATTAATTAAACAGAAAAAAAAAAAGAAAAAACCAAAAAAACAAATTAACCGTTTTCAAGGCGCAAGTTCAAGACAAGAAATCCGCATTAAATGCAATTTTTCCATAAATTTTATTTATTTATTTATTTCCCTTTCCACTCGATCCCATTGCAGATGAGAAAATGCACAAGGGTCAGCATTATGTCGGACGCAGCAGCTATCCG
*****************************************************************************************************************************************************************************************************************************.......((........((((..((.((....(((((......((((((.(((((......))))).)))))).......)))))........)).)).....))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060666
160_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060656
9x160_ovaries_total
 SRR060658
140_ovaries_total
 SRR060673
9_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR1106727
larvae
 V053
head
 SRR060672
9x160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060665
9_females_carcasses_total
 M028
head
 SRR060674
9x140_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060689
160x9_testes_total
 V116
male body
.............................................................................................................................................................................................................................TTAACCGTTTTCAAGGCGCAA.......................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................GACTACGGCGATCATCATGC........................................................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................CCCTTTCCACTCGATCCCATTGCAG.................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................GAATAAAGTGTCGCATGAGAAA.................................................................................................................................................................................................................................................................................................................................. 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........CCATAGACTACGGCGATCATA............................................................................................................................................................................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................AGGGTCAGCATTATGTCGGACGCAGC......... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................AAGGGTCAGCATTATGTCGG................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TACATTAGTTAAACTGAAAAAAAAAAAA.................................................................................................................................................................................. 28 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................TTTCCCTTTCGACACGTTCCCA........................................................ 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................TGCACAAGGGTCAGCATTA...................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................ATGAGAAAATGCACAAGGGTC............................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................ATCATCATGCGAATAAAGTGTC............................................................................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................ACTGCAACGGTATCTGAAT...................................................................................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAAAAAAAGGAAAAACCAAAAAA.................................................................................................................................................................... 25 1 8 0.25 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
......................................................................................................GCAACGGACTCTTAATCCG................................................................................................................................................................................................................................................................... 19 3 13 0.15 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ACTTTAATGGAACAGAAAAAAAA...................................................................................................................................................................................... 23 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................CTGCAACGGTATCTGAAT...................................................................................................................................................................................................................................................................... 18 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................AATCCCAATCGGAAACTGAAC.................................................................................................................................................................................................................................................... 21 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................GAGAAAATGCACAAAGGACG............................ 20 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................ACAGGGTGACCACAAAAAAAAA........................................................................................................................................................................................................................ 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................TTAAACGGAAAAAAAAAA.................................................................................................................................................................................... 18 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................ACCACAAAAAAAAAAAAAA................................................................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................................................TCCCATTGTAGAGGTGAAA.......................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CCTCGCCGCGAGGTATCTGATGCCGCTAGTAGTACGCTTATTTCACAGCGCATTCATTTAAATTTACGTAAATTTATTCCAGTGTTTCAGTCAGTTGGGTACCGTTGCCATAGACTTAGGCTTAGCCTTAGCCTTGACGTTTTGTGCAAATGGTGTTTTTTTTTTTTTTTAGTTATGTAATTAATTTGTCTTTTTTTTTTTCTTTTTTGGTTTTTTTGTTTAATTGGCAAAAGTTCCGCGTTCAAGTTCTGTTCTTTAGGCGTAATTTACGTTAAAAAGGTATTTAAAATAAATAAATAAATAAAGGGAAAGGTGAGCTAGGGTAACGTCTACTCTTTTACGTGTTCCCAGTCGTAATACAGCCTGCGTCGTCGATAGGC
**************************************************.......((........((((..((.((....(((((......((((((.(((((......))))).)))))).......)))))........)).)).....))))))***************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060686
Argx9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 V047
embryo
 SRR060658
140_ovaries_total
 SRR060673
9_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 V053
head
 SRR060676
9xArg_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060657
140_testes_total
 M061
embryo
 SRR060681
Argx9_testes_total
 GSM1528803
follicle cells		 SRR060679
140x9_testes_total
................................................................................................................................CAGCCATGACGTTTAGTGCAA....................................................................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................CGTTGCCATAGGCTTAGGCTT................................................................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CTCAGCCATGACGTTTAGTGC......................................................................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................GTGAGCTAGGGTAACGTCTAC............................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................TGCCGCTAGTAGTACGCTTATTTC................................................................................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................GCGTTCAAGTTCTGTTCTT............................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TCAGCCATGACGTTTAGTGC......................................................................................................................................................................................................................................... 20 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........CGAGGAAGCTGATGCCGCAAGT.............................................................................................................................................................................................................................................................................................................................................................. 22 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GGCTTTTTTGGTTAATAGGC........................................................................................................................................................ 20 3 10 0.50 5 0 0 0 0 0 0 0 0 0 3 1 1 0 0 0 0
..........AGGTATCTGATGCCGAAAG............................................................................................................................................................................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CTCAGCCATGACGTTTAGTG.......................................................................................................................................................................................................................................... 20 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GTCTGGTGGGTTCCGTTGCC............................................................................................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................AGCCATGACGTTTAGTGCAAG...................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................TTCCGTTAAAAAGGTATTTAA............................................................................................. 21 1 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................GCCATGACGTTTAGTGCAAG...................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................TTCCGTTAAAAAGGTACTTAA............................................................................................. 21 2 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................GCAGTAGACTGAGGCTTAGC.............................................................................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................AGCGTACAACTTCTGTTCTT............................................................................................................................ 20 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................GGGGATTTAAAAGAAATAAAT.................................................................................. 21 3 16 0.13 2 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................................................................TTACGTTAAAAAGGTATTTTA............................................................................................. 21 1 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................................TTACGTTAAAAAGGTATTT............................................................................................... 19 0 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................AGACTTAGGCTTAGACTTA.......................................................................................................................................................................................................................................................... 19 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CCATGACGTTTAGTGCAAG...................................................................................................................................................................................................................................... 19 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GTCGGGTAGCGTTGCGATA............................................................................................................................................................................................................................................................................ 19 3 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................TCGTGCGACAGCCTGCGTC.......... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TGGTGTTTTTTTTTTTTTT................................................................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................................TCTTTTTTTTTTTCTTTT.............................................................................................................................................................................. 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:2226803-2227182 + dvi_18018 GGA----GCGGCGCTCCATAGACTACGGCGATCATCATGCGAATAAAGTGTCGCGTAAGTAAATTT--------------------------AA--------------------------------------AT-----------------------------------------------------------------------------GCATTTAAATAAGGTCACAA--AGTCAGTCAACCCA--TGG-C--AACGGTATCTGAATCCGAATCGGAATCGGAACTGC------------AAAACACGTTTACC---ACAAAAAAAA----AA-A--AAAATC------AATACATTAATT-AAA-----CAGA--------------------------------------AAAAAAA----AAAGAAAAAACCAAAAAAA------CAAA-TTAACCGTTTTCAAGGC--GCAAGTTCAAGACAAGAAATC----C--GCATTAAATG-----CAATTTTTCC----ATAAATTTTATTTATTTA----T-------TTATT--TCCCTT-------TCC--ACTCGATC----CCATTGCAGATGAGAAAATGCACAAGGGT---CAGCATTATGTCGGACGCAGCAGCTATCCG
droMoj3 scaffold_6654:1636772-1637137 - AGA----GAGACGGTCTATAGACTCCAGCTGGCATCATAAAAATAAGCTTTCACGTAAGTATAAACATATATGTATATCTCAATTTAGTATGAA--------------------------------------AT----------------------------------------------------------------------------GCATATTTAATAAGGTCACAA--AGTCAGTCAACCCA--GAGTC--AAAAGGA-----------AACGAACTCGGAAATGTT------TACAAAAACTAT------------------A--------A--AAAATC------AATAAAAATATTTAAAATAT-TTAA--------------------------------------TATTTAA----ACAAAGCGC----------------AGTC-TTACACGATTTCAAGGC--GCAAGTTCAAGTTTA---AAT----TGA---AATGTAATATTT----------TTCAAAATAATTT--------ATT--T-------TTATTCT--TCTT-------------TCT--GC----CCTTTGCAGATGGCAAGATGGATAAGAAGACGCCACATGGCGTCAAGCGCAGCAGCTTTCCA
droGri2 scaffold_15110:3267054-3267380 + GGA----GCGACGGTCCATAGACTACAGTGGTCATCACGAAAATAAACTAGCACGTAAGTGTATTC--------------------------AG--------------------------------------CG-----------------------------------------------------------------------------ACGCTTAAATAAGGCCACAG--AGTCAGTCAACCCG--AT-----G--TGCATT-----------------GAGAAACGGA-------ATCGGAAACACAAA----------CACACAAACAATT-C--ATAATT------AATAAT---------------TCAA------------------------------------------TAA----ATAATGCAGTTCCGATTTT------AAAGCTTGCCCGTTTTCAAGGCAAGCAAGTTCAAGTGGA---GTC----T--TTATTAAATA-----CTAT--------------------------------T---TTTTT------T--GTATATGATTTTT--ATGC--GC----TCTTTGCAGATGACAAAATGCATAAGGAT---CAGCATTATATTGGCAGGAGTAACTATCCG
droWil2 scf2_1100000004768:225797-226133 - GGG----CAAAAGATCCGTTGACTACAAGCCGCATCATCTGAATCGTTTGGGATGTAAGTACATA----------------------------A--------------------------------------AT-----------------------------------------------------------------------------TCATAGTAATAAGGTCACCA--AGTCACTCAACTCG----------------TG-----------------CGGAACTGCG------TTAAGTA--------------------------------A--ATAATT------AATAAATTGATA-ATA-----ACAA-AACAAAAACGAAAAGAAAAAAAAAAATCACAAAATCACATTTAC----ATAAAACAGTTCCGTTTTTCGCATTCAAC-TTAACCGTTTTCAAGGC--TCCAGTTCAAGTTCG---AAT----TGT--AATTGTAA-----------------------------------------T-----------TGT--TGTTTTTGT---------GC--T-----TTTCCACAGTTGGCAAACTGCACGACAAA---CATCATTACATCAGTCGCGGCAACTTTCCA
dp5 XR_group8:687893-688225 + GGA----CAAGCGGTCTATAGAGTACAGCCATCACCATCTGAATCGCCTGGGATGTAAGTATAAG---------------------------------------------------------------------------------------------------------------------------------TCAGATAAATCAGATTATTGACTGAATAAGGTCAGAG--AGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAACTGG----------CAAAAACACGTTT------AAATTTGTAG----AC-G--GCC-----------TGTCGGCAAT-GCT-----CGGG--------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------AAAC-TTAACCGTTTTCAAGGC--ACAAGTTCAAGATCA---CTT----TTCTCAC--ACAA-----------------------------------------T-----------------GTTTCCCATTTTT--GTTC--AC----TGTTCACAGACGGCAAACTGCACGACAAG---CATCATTACATCACCCGGAGTAACTATCCC
droPer2 scaffold_32:796052-796384 - GGA----CAAGCGGTCTATAGAGTACAGCCATCACCATCTGAATCGCCTGGGATGTAAGTATAAG---------------------------------------------------------------------------------------------------------------------------------TCAGATAAATCAGATTATTGACTGAATAAGGTCAGAG--AGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAACTGG----------CAAAAACACGTTT------AAATTTGTAG----AC-G--GCC-----------TGTCGGCAAT-GCT-----CGGG--------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------AAAC-TTAACCGTTTTCAAGGC--ACAAGTTCAAGATCA---CTT----TTCTCAC--ACAA-----------------------------------------T-----------------GTTTCCCATTTTT--GTTC--AC----TGTTCACAGACGGCAAACTGCACGACAAG---CATCATTACATCACCCGGAGTAACTATCCC
droAna3 scaffold_13337:7154473-7154865 - GGAGGGACAGACGATCCATCGACTATCCACACCATCACATGAATCGGCTAGGATGTAAGTATCTTC--------------------------CACC-----------------------------------------------------------------GATTAGTCTC------TGTA-----------------------AAGATTAGCAATTGATTGAGGTCAGAG--TGTCAGTCAACCCG--AC-AGAGAATTGCATT-----------------CGGAACTGAAATGCAGCACCGAAAACACGTTCCC-----AGCGTGTAG----ACAA--GTAATT------AATAAACACATT-ACATTACTCGGGGAAT----------------------------------AATTTGC----ATAAAGCAGTTCCGATGCA------ACAG-TTAACCGTTTTCAAGGC--GCAGGTTCAAGATCA---ATCGATTAGC----TGGCT----------------CTCAA-----------------CTGACGTTTTCTT------TCCGTTTCCCCCTTTTT-T-----------TTTGTCCAGATGGCAAGATTCACGACAAA---CATCATTACATCAGCCGCAGCAACTATCCG
droBip1 scf7180000396418:162563-162990 - GGAGAGATAGGCGATCCATCGACTATCCACACCATCACTTGAATCGGCTGGGATGTAAGTATCTTC--------------------------TATCTT----------------------------TTGATAGCACTCAA-GG-GAAATTCAAAAAATTTAAATTAGTCTGT-GATCT-TA---------ATTG------GAATAAGATTAGTAATTGATTGAGGTCAGAG--TGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAACTGAAATGCAGCACCGAAAACACGTTCCC-----AGCGTGTAG----ACAA--GTAATT------AATAAACACATT-ACT-----CGGGCCAT----------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------ACAG-TTAACCGTTTTCAAGGC--ACAGGTTCAAGATCA---ATCGATTAGC----TGGCT----------------CTCAA-----------------CTCATGTTTTCTT------TCCGTTTCC---------------AACTTTTTCCAACAGATGGCAAGCTTCACGACAAA---CATCATTACATCAGCCGGAGTATCTATCCG
droKik1 scf7180000302486:875916-876276 - GGA----CAGGCGGTCCATTGAGTACTCGCACCATCATCTAAATCGGCTGGGATGTAAGTATCTTG--------------------------AA--------------------------------------GAACCCAAACA-------------------------------------------------------------GAAACTAAAGAGAGATTAAGGCCAGAGGGTGTCAGTCAACTCCAGAC-AGATAATTGCATT-----------------CGGAACTGCAGT----GGCCGAAAACACGTTTT-A---AAATGTGTAG----AC-TTCGGAATTAAAATCAATATT---------------------------------------------------------CATTTGCATACACAAAGCAGTTCCGATGCA------ACAG-TTAACCGACTTCAAGGC--GCAGGTTCAAGATCA---ATT----TGCTCACTCGCTC------------------------------------A----C-----------------GTTTCCCCCTTTCT-GGTT--TT----CCTTTCTAGACGGCAAAGCGTACGACAAG---CATCACTACCTCATCCGGAGCAGCTTCCCG
droFic1 scf7180000454107:497103-497371 - G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATCGAATAAGGTCAGAG--TGTCAGTCAACTCG--AC-----AATTGCACT-----------------CGGAACTGCA------TATCGAAAACACGTTTT-A---AAGTGTTTAG----GT-T--GCAATT------AATACGCCTTTA-AGT-----CCGG--------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------ACAG-TTAACCGATTTCAAGGC--GCAGGTTCAAGATCG---ATT----TGCTCACTCGCAT-----------------------------------------C-----------------GTTTCCCCCTTTTT-TTCC--AA----CTTTTTCAGACGGCAAAACACACAACAAA---CATCACCATATCAGCCGGAGCAGTTATCCA
droEle1 scf7180000491255:3462902-3463329 - CGA----CAGGCGATCCATCGAGTACCCGCATCACCATCTAAACCGACTGGGATGTAAGTATCTAACTAGAT-----------------------CTTTAAGCTTATTAAGCTATTAATATTTGATTTGAT------------TAAAACTTGTAAAAGTTA---TAGTCTGTAGATCTGTAAGGAAAAGAACAGGC-----AATTAAATTAGCAACTAAATAAGGTCAGAG--TGTCAGTCAACCTG--AC-----AATTGCATT-----------------CGGAACTGCA------CACAGAAAACACGTTTTTG---AAGTGTGTAG----AT-T--GGAATT------AATGTTCG-------------------------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------ACAG-TTAACCGATTTCAAGGC--GCAGGTTCAAGATCG---ATT----TGCTCACTCGCTC------------------------------------ACT--C-----------------GTTTCCCCCCTTTTCCCCT--GAC---TTTTTTCAGACGGCAAAACGCACAACAAG---CACCATTCAATCAGCCGGAGCACTTACCCA
droRho1 scf7180000779902:37215-37482 + AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAATTAGCAACTAAATAAGGTCAGAG--TGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAACTGCA------TACAGAAAACACGTTTTTA---AAGTGTGTAG----AT-T--GGAATT------AATAAGCG-------------------------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------ACAG-TTAACCGACTTCAAGGC--GCAGGTTCAAGATCG---ATT----TACTCACTCGCAA-----------------------------------------C-----------------GTTTCCCCCTTTT---TCC--GA----CCTTTTCAGACGGCAAAACACACAACAAG---CACCATCATATAAGACGAAGCAGTTATCCG
droBia1 scf7180000302428:3086331-3086589 + G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGACTGAATAAGGTCAGAG--TGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAACTGCA------AATCGAAAACACGTTTTTA---AAGTGTGTAG----A--T--GCAATT------AATGCGCGCATT-ACA-----CCGG--------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------AAAG-TTAACCGATCTCAAGGC--GCAGGTTCAAGATCA---ATT----TGCTCACTCGCAA-----------------------------------------C-----------------GCTTTCCC-------------GA----CTATTTCAGACGGCAAAACACACAACAAG---AACCATCACATCCGGCGGAGCAGCTATCCC
droTak1 scf7180000415352:331862-332139 + TAA----GGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGAAAATTAGCGACTTAATAAGGTCAGAG--TGTCAGTCAACCCT--AC-----AATTGCATT-----------------CGGAACTGCA------TTTCGAAAACACGTTTATA---AAGTGTGTAG----AT-T--GCAATTA-----AATACGCG-------------------------------------------------------GATTTAC----ATAAAGCAGTTCCGATGCA------AAAG-TTAACCGACTTCAAGGC--GCAGGTTCAAGATCA---ATT----GGCTCACTCGCAA-----------------------------------------C-----------------GTTTCCCCTTTTTTATTGC--GA----CTATTTCAGACGGTAAAACGCACAACAAG---CACCACCACATCAGCCGCAGTAGCTATCCA
droEug1 scf7180000409711:312011-312274 + AT---------------------------------------------------------------------------------------------------------------------------------------------TAAA----------------------------------------------------------------ACAAATTAATAAGGTCAGAA--TGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAAATGCA------TATCGAAAACACGTTTTTA--AAAATGTGTAG----AT-T--GCAATT------AATACGCGCATT-ACA-----CCGG--------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------AAAG-TTAACCGATTTCAAGGC--GCAGGTTCAAGATCA---ATT----TGCTCACTCGCAA-----------------------------------------C-----------------GTTTCCCC--------------------TTTTTCAGATGGCAAAACGCACAACAAG---CACCACTATATCAGTCGGAGCAGTTATCCA
dm3 chr3L:17023335-17023576 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAGGTCAGAG--TGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAACTGCA------TATCGAAAACACGTTTTTTTTTAAGTGTGTAG----AT-T--GCAATT------AATAC------------------GG--------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------AAAG-TTAACCGACTTCAAGGC--GCAGGTTCAAGATCA---ATT----TGCTCACTGGCAA-----------------------------------------C-----------------GTTTTCCC-------------------CCTTTTCAGCCGGCAAAACGCACAACAAG---CATCACTACATCAGCCGAAGCAGCTATCCA
droSim2 3l:16606496-16606749 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAGGTCACAG--TGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAACTGCA------TATCGAAAACACGTTTTTTTTAAAGTGTGTAG----AT-T--GCAATT------AATACGCGCATT-ACA-----CCGG--------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------AAAG-TTTACCGACTTCAAGGC--GCAGGTTCAAGATCA---ATT----TGCTCACTGGCTA-----------------------------------------C-----------------GTTTTTCC-------------------CCTTTTCAGCCGGCAAAACGCACAACAAG---CACCACTACATCAGCCGAAGCAGCTATCCA
droSec2 scaffold_0:9084029-9084281 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAGGTCACAG--TGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAACTGCA------TATCGAAAACACGTTTTTTT-TAAGTGTGTAT----AT-T--GCAATT------AATACGCGCATT-ACA-----CCGG--------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------AAAG-TTAACCGACTTCAAGGC--GCAGGTTCAAGATCA---ATT----TGCTCACTGGCTA-----------------------------------------C-----------------GTTTTCCC-------------------CCTTTTCAGCCGGCAAAACGCACAACAAG---CACCACTACATCAGCCGAAGCAGCTATCCA
droYak3 3L:17050057-17050331 + GAT--------------------------------------------------------------------------------------------------------------------------------------------TAAAAT-----------------------------------------------------ATTGGATTAGCGAGTTAATAAGGTCAGAG--TGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAACTGCA------TATCGAAAACACGTTTTAT---AAGTGTGTAG----AT-T--GCAATT------AATACGCGCACT-ACG-----CCGG--------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------AAAG-TTAACCGATTTCAAGGC--GCAGGTTCAAGATCA---ATT----TGCTCACTGGCAA-----------------------------------------T-----------------GTTTTCCC--------------------CTTTTCAGCCGGCAAAACGGTCCACAAG---CACCACTATATCAGCCGGAGCAGTTATCCA
droEre2 scaffold_4784:16819373-16819648 + GAT--------------------------------------------------------------------------------------------------------------------------------------------TAAAAT-----------------------------------------------------ATTGGATTAGCGAGTTAATAAGGTCAGAG--TGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAACTGCA------TATCGAAAACACGTTTTTT---AAGTGTGTAG----AT-T--GCAATT------AATACGCGCACT-ACA-----CCGG--------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------AAAG-TTAACCGATTTCAAGGC--GCAGGTTCAAGATCA---ATT----TGCTCACTGGCAA-----------------------------------------C-----------------GTTTTCCC-------------------CCTTTTCAGCCGGCAAATCTGTCCACAAG---CACCACTATATCAGCCGGAGCAGTTACCCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GGA----GCGGCGCTCCATAGACTACGGCGATCATCATGCGAATAAAGTGTCGCGTAAGTAAATTT--------------------------AA--------------------------------------AT-----------------------------------------------------------------------------GCATTTAAATAAGGTCACAA--AGTCAGTCAACCCA--TGG-C--AACGGTATCTGAATCCGAATCGGAATCGGAACTGC------------AAAACACGTTTACC---ACAAAAAAAA----AA-A--AAAATC------AATACATTAATT-AAA-----CAGA--------------------------------------AAAAAAA----AAAGAAAAAACCAAAAAAA------CAAA-TTAACCGTTTTCAAGGC--GCAAGTTCAAGACAAGAAATC----C--GCATTAAATG-----CAATTTTTCC----ATAAATTTTATTTATTTA----T-------TTATT--TCCCTT-------TCC--ACTCGATC----CCATTGCAGATGAGAAAATGCACAAGGGT---CAGCATTATGTCGGACGCAGCAGCTATCCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACCGTTTTCAAGGC--GCAA......................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
....................GACTACGGCGATCATCATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTT-------TCC--ACTCGATC----CCATTGCAG.....................................................2511.001000000100000000000000000000000000000000000000000000000000000000
...............CCATAGACTACGGCGATCATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGT---CAGCATTATGTCGGACGCAGC.........2611.001000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGT---CAGCATTATGTCGG................2011.001000000001000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACAAGGGT---CAGCATTA......................1911.001000000000000000000000000000000000000000000000000000000000000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAAATGCACAAGGGT---C.............................2111.001000000000000000000000000000000000000000000000000000000000000100
..............................ATCATCATGCGAATAAAGTGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................ACC---ACAAAAAAAA----AA-A--AAA..............................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000100000000000000000000000000000000000000
droMoj3
AGA----GAGACGGTCTATAGACTCCAGCTGGCATCATAAAAATAAGCTTTCACGTAAGTATAAACATATATGTATATCTCAATTTAGTATGAA--------------------------------------AT----------------------------------------------------------------------------GCATATTTAATAAGGTCACAA--AGTCAGTCAACCCA--GAGTC--AAAAGGA-----------AACGAACTCGGAAATGTT------TACAAAAACTAT------------------A--------A--AAAATC------AATAAAAATATTTAAAATAT-TTAA--------------------------------------TATTTAA----ACAAAGCGC----------------AGTC-TTACACGATTTCAAGGC--GCAAGTTCAAGTTTA---AAT----TGA---AATGTAATATTT----------TTCAAAATAATTT--------ATT--T-------TTATTCT--TCTT-------------TCT--GC----CCTTTGCAGATGGCAAGATGGATAAGAAGACGCCACATGGCGTCAAGCGCAGCAGCTTTCCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GGA----GCGACGGTCCATAGACTACAGTGGTCATCACGAAAATAAACTAGCACGTAAGTGTATTC--------------------------AG--------------------------------------CG-----------------------------------------------------------------------------ACGCTTAAATAAGGCCACAG--AGTCAGTCAACCCG--AT-----G--TGCATT-----------------GAGAAACGGA-------ATCGGAAACACAAA----------CACACAAACAATT-C--ATAATT------AATAAT---------------TCAA------------------------------------------TAA----ATAATGCAGTTCCGATTTT------AAAGCTTGCCCGTTTTCAAGGCAAGCAAGTTCAAGTGGA---GTC----T--TTATTAAATA-----CTAT--------------------------------T---TTTTT------T--GTATATGATTTTT--ATGC--GC----TCTTTGCAGATGACAAAATGCATAAGGAT---CAGCATTATATTGGCAGGAGTAACTATCCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GGG----CAAAAGATCCGTTGACTACAAGCCGCATCATCTGAATCGTTTGGGATGTAAGTACATA----------------------------A--------------------------------------AT-----------------------------------------------------------------------------TCATAGTAATAAGGTCACCA--AGTCACTCAACTCG----------------TG-----------------CGGAACTGCG------TTAAGTA--------------------------------A--ATAATT------AATAAATTGATA-ATA-----ACAA-AACAAAAACGAAAAGAAAAAAAAAAATCACAAAATCACATTTAC----ATAAAACAGTTCCGTTTTTCGCATTCAAC-TTAACCGTTTTCAAGGC--TCCAGTTCAAGTTCG---AAT----TGT--AATTGTAA-----------------------------------------T-----------TGT--TGTTTTTGT---------GC--T-----TTTCCACAGTTGGCAAACTGCACGACAAA---CATCATTACATCAGTCGCGGCAACTTTCCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
GGA----CAAGCGGTCTATAGAGTACAGCCATCACCATCTGAATCGCCTGGGATGTAAGTATAAG---------------------------------------------------------------------------------------------------------------------------------TCAGATAAATCAGATTATTGACTGAATAAGGTCAGAG--AGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAACTGG----------CAAAAACACGTTT------AAATTTGTAG----AC-G--GCC-----------TGTCGGCAAT-GCT-----CGGG--------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------AAAC-TTAACCGTTTTCAAGGC--ACAAGTTCAAGATCA---CTT----TTCTCAC--ACAA-----------------------------------------T-----------------GTTTCCCATTTTT--GTTC--AC----TGTTCACAGACGGCAAACTGCACGACAAG---CATCATTACATCACCCGGAGTAACTATCCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC--AC----TGTTCACAGACGGCAA..............................................2114.0040000000400
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGATCA---CTT----TTCTCAC--AC......................................................................................................................................................2311.0010100000000
.....................................................................................................................................................................................................GATAAATCAGATTATTGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
GGA----CAAGCGGTCTATAGAGTACAGCCATCACCATCTGAATCGCCTGGGATGTAAGTATAAG---------------------------------------------------------------------------------------------------------------------------------TCAGATAAATCAGATTATTGACTGAATAAGGTCAGAG--AGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAACTGG----------CAAAAACACGTTT------AAATTTGTAG----AC-G--GCC-----------TGTCGGCAAT-GCT-----CGGG--------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------AAAC-TTAACCGTTTTCAAGGC--ACAAGTTCAAGATCA---CTT----TTCTCAC--ACAA-----------------------------------------T-----------------GTTTCCCATTTTT--GTTC--AC----TGTTCACAGACGGCAAACTGCACGACAAG---CATCATTACATCACCCGGAGTAACTATCCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................AATTGCATT-----------------CGGAACTGG----------CAA.....................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droAna3
GGAGGGACAGACGATCCATCGACTATCCACACCATCACATGAATCGGCTAGGATGTAAGTATCTTC--------------------------CACC-----------------------------------------------------------------GATTAGTCTC------TGTA-----------------------AAGATTAGCAATTGATTGAGGTCAGAG--TGTCAGTCAACCCG--AC-AGAGAATTGCATT-----------------CGGAACTGAAATGCAGCACCGAAAACACGTTCCC-----AGCGTGTAG----ACAA--GTAATT------AATAAACACATT-ACATTACTCGGGGAAT----------------------------------AATTTGC----ATAAAGCAGTTCCGATGCA------ACAG-TTAACCGTTTTCAAGGC--GCAGGTTCAAGATCA---ATCGATTAGC----TGGCT----------------CTCAA-----------------CTGACGTTTTCTT------TCCGTTTCCCCCTTTTT-T-----------TTTGTCCAGATGGCAAGATTCACGACAAA---CATCATTACATCAGCCGCAGCAACTATCCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GGAGAGATAGGCGATCCATCGACTATCCACACCATCACTTGAATCGGCTGGGATGTAAGTATCTTC--------------------------TATCTT----------------------------TTGATAGCACTCAA-GG-GAAATTCAAAAAATTTAAATTAGTCTGT-GATCT-TA---------ATTG------GAATAAGATTAGTAATTGATTGAGGTCAGAG--TGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAACTGAAATGCAGCACCGAAAACACGTTCCC-----AGCGTGTAG----ACAA--GTAATT------AATAAACACATT-ACT-----CGGGCCAT----------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------ACAG-TTAACCGTTTTCAAGGC--ACAGGTTCAAGATCA---ATCGATTAGC----TGGCT----------------CTCAA-----------------CTCATGTTTTCTT------TCCGTTTCC---------------AACTTTTTCCAACAGATGGCAAGCTTCACGACAAA---CATCATTACATCAGCCGGAGTATCTATCCGSizeHit CountTotal NormTotal
No Reads
droKik1
GGA----CAGGCGGTCCATTGAGTACTCGCACCATCATCTAAATCGGCTGGGATGTAAGTATCTTG--------------------------AA--------------------------------------GAACCCAAACA-------------------------------------------------------------GAAACTAAAGAGAGATTAAGGCCAGAGGGTGTCAGTCAACTCCAGAC-AGATAATTGCATT-----------------CGGAACTGCAGT----GGCCGAAAACACGTTTT-A---AAATGTGTAG----AC-TTCGGAATTAAAATCAATATT---------------------------------------------------------CATTTGCATACACAAAGCAGTTCCGATGCA------ACAG-TTAACCGACTTCAAGGC--GCAGGTTCAAGATCA---ATT----TGCTCACTCGCTC------------------------------------A----C-----------------GTTTCCCCCTTTCT-GGTT--TT----CCTTTCTAGACGGCAAAGCGTACGACAAG---CATCACTACCTCATCCGGAGCAGCTTCCCGSizeHit CountTotal NormTotal
No Reads
droFic1
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATCGAATAAGGTCAGAG--TGTCAGTCAACTCG--AC-----AATTGCACT-----------------CGGAACTGCA------TATCGAAAACACGTTTT-A---AAGTGTTTAG----GT-T--GCAATT------AATACGCCTTTA-AGT-----CCGG--------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------ACAG-TTAACCGATTTCAAGGC--GCAGGTTCAAGATCG---ATT----TGCTCACTCGCAT-----------------------------------------C-----------------GTTTCCCCCTTTTT-TTCC--AA----CTTTTTCAGACGGCAAAACACACAACAAA---CATCACCATATCAGCCGGAGCAGTTATCCASizeHit CountTotal NormTotal
No Reads
droEle1
CGA----CAGGCGATCCATCGAGTACCCGCATCACCATCTAAACCGACTGGGATGTAAGTATCTAACTAGAT-----------------------CTTTAAGCTTATTAAGCTATTAATATTTGATTTGAT------------TAAAACTTGTAAAAGTTA---TAGTCTGTAGATCTGTAAGGAAAAGAACAGGC-----AATTAAATTAGCAACTAAATAAGGTCAGAG--TGTCAGTCAACCTG--AC-----AATTGCATT-----------------CGGAACTGCA------CACAGAAAACACGTTTTTG---AAGTGTGTAG----AT-T--GGAATT------AATGTTCG-------------------------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------ACAG-TTAACCGATTTCAAGGC--GCAGGTTCAAGATCG---ATT----TGCTCACTCGCTC------------------------------------ACT--C-----------------GTTTCCCCCCTTTTCCCCT--GAC---TTTTTTCAGACGGCAAAACGCACAACAAG---CACCATTCAATCAGCCGGAGCACTTACCCASizeHit CountTotal NormTotal
No Reads
droRho1
AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAATTAGCAACTAAATAAGGTCAGAG--TGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAACTGCA------TACAGAAAACACGTTTTTA---AAGTGTGTAG----AT-T--GGAATT------AATAAGCG-------------------------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------ACAG-TTAACCGACTTCAAGGC--GCAGGTTCAAGATCG---ATT----TACTCACTCGCAA-----------------------------------------C-----------------GTTTCCCCCTTTT---TCC--GA----CCTTTTCAGACGGCAAAACACACAACAAG---CACCATCATATAAGACGAAGCAGTTATCCGSizeHit CountTotal NormTotal
No Reads
droBia1
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGACTGAATAAGGTCAGAG--TGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAACTGCA------AATCGAAAACACGTTTTTA---AAGTGTGTAG----A--T--GCAATT------AATGCGCGCATT-ACA-----CCGG--------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------AAAG-TTAACCGATCTCAAGGC--GCAGGTTCAAGATCA---ATT----TGCTCACTCGCAA-----------------------------------------C-----------------GCTTTCCC-------------GA----CTATTTCAGACGGCAAAACACACAACAAG---AACCATCACATCCGGCGGAGCAGCTATCCCSizeHit CountTotal NormTotal
No Reads
droTak1
TAA----GGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGAAAATTAGCGACTTAATAAGGTCAGAG--TGTCAGTCAACCCT--AC-----AATTGCATT-----------------CGGAACTGCA------TTTCGAAAACACGTTTATA---AAGTGTGTAG----AT-T--GCAATTA-----AATACGCG-------------------------------------------------------GATTTAC----ATAAAGCAGTTCCGATGCA------AAAG-TTAACCGACTTCAAGGC--GCAGGTTCAAGATCA---ATT----GGCTCACTCGCAA-----------------------------------------C-----------------GTTTCCCCTTTTTTATTGC--GA----CTATTTCAGACGGTAAAACGCACAACAAG---CACCACCACATCAGCCGCAGTAGCTATCCASizeHit CountTotal NormTotal
No Reads
droEug1
AT---------------------------------------------------------------------------------------------------------------------------------------------TAAA----------------------------------------------------------------ACAAATTAATAAGGTCAGAA--TGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAAATGCA------TATCGAAAACACGTTTTTA--AAAATGTGTAG----AT-T--GCAATT------AATACGCGCATT-ACA-----CCGG--------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------AAAG-TTAACCGATTTCAAGGC--GCAGGTTCAAGATCA---ATT----TGCTCACTCGCAA-----------------------------------------C-----------------GTTTCCCC--------------------TTTTTCAGATGGCAAAACGCACAACAAG---CACCACTATATCAGTCGGAGCAGTTATCCASizeHit CountTotal NormTotal
No Reads
dm3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAGGTCAGAG--TGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAACTGCA------TATCGAAAACACGTTTTTTTTTAAGTGTGTAG----AT-T--GCAATT------AATAC------------------GG--------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------AAAG-TTAACCGACTTCAAGGC--GCAGGTTCAAGATCA---ATT----TGCTCACTGGCAA-----------------------------------------C-----------------GTTTTCCC-------------------CCTTTTCAGCCGGCAAAACGCACAACAAG---CATCACTACATCAGCCGAAGCAGCTATCCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACATCAGCCGAAGCAGCTA....2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000030000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................AGGTCAGAG--TGTCAGTCAACC................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000
.................................................................................................................................................................................................................................TCAGAG--TGTCAGTCAACCCG--............................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................AACTGCA------TATCGAAAACACGT.............................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TCAGAG--TGTCAGTCAACCCG--A...........................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTTCAAGGC--GCAGGTT...................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................GAACTGCA------TATCGAAAACACG..............................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000001000000000
..................................................................................................................................................................................................................................CAGAG--TGTCAGTCAACCCG--AC-----.....................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTACATCAGCCGAAGCAGCTATCC.2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGATCA---ATT----TGCTCACTGG.......................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACATCAGCCGAAGCAGCTATCC.2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGTTCAAGATCA---ATT----TGCT.............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................AC-----AATTGCATT-----------------CGGAACTGCA------...........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ATT----TGCTCACTGGCAA-----------------------------------------C-----------------GT.......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGCCGGCAAAACGCACA......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCAGTTCCGATGCA------AAAG-TTAACCG......................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTTCAGCCGGCAAAACGC.........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................GTCAGAG--TGTCAGTCAACCCG--............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACATCAGCCGAAGCAG.......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................CCG--AC-----AATTGCATT-----------------CGGAACT....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................AACCCG--AC-----AATTGCATT-----------------CGGA.......................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGC--GCAGGTTCAAGATCA---A.......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AACACGTTTTTTTTTAAGTGTGT.............................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG---CATCACTACATCAGCCGAAGC.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGCAA-----------------------------------------C-----------------GTTTTCCC-------------------CCTTT.........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................C------------------GG--------------------------------------CATTTGC----ATAAAGCAG..................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTCAAGATCA---ATT----TGCTC............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCAGCCGAAGCAGCTA....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CATCACTACATCAGCCG.............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................TGCA------TATCGAAAACACGTTTT..........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG---CATCACTACATCAGCCGA............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACATCAGCCGAAGCAGCTATC..2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................CAGTCAACCCG--AC-----AATTGCAT.............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................AAGGTCAGAG--TGTCAGTCAACC................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CTGCA------TATCGAAAACACGTTTTTTTTTA....................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACATCAGCCGAAGCAGCT.....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTACATCAGCCGAAGC.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTACATCAGCCGAAGCAGCT.....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................................................................................................................................................................................................................................................................AGTGTGTAG----AT-T--GCAATT------AAT..................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCACTACATCAGCCGAAGC.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TCAGTCAACCCG--AC-----AATTGCATT-----------------CG.........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACTGGCAA-----------------------------------------C-----------------GTTTTCCC-------------------CCTTTTCAG.....................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................TCAGAG--TGTCAGTCAACCCG--AC-----AAT..................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ATT----TGCTCACTGGCAA-----------------------------------------C-----------------GT.......................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCAGCCGAAGCAGCTATC..2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
droSim2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAGGTCACAG--TGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAACTGCA------TATCGAAAACACGTTTTTTTTAAAGTGTGTAG----AT-T--GCAATT------AATACGCGCATT-ACA-----CCGG--------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------AAAG-TTTACCGACTTCAAGGC--GCAGGTTCAAGATCA---ATT----TGCTCACTGGCTA-----------------------------------------C-----------------GTTTTTCC-------------------CCTTTTCAGCCGGCAAAACGCACAACAAG---CACCACTACATCAGCCGAAGCAGCTATCCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................G----AT-T--GCAATT------AATACGCGCAT..........................................................................................................................................................................................................................................................................................................2112.00200000000002000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATCA---ATT----TGCTCACTGGC......................................................................................................................................................2111.00100000000001000000
......................................................................................................................................................................................................................................................................................................................GTTTTTTTTAAAGTGTGTA............................................................................................................................................................................................................................................................................................................................................1911.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................TTAAAGTGTGTAG----AT-T--GCAATT------.....................................................................................................................................................................................................................................................................................................................2211.00100000001000000000
.....................................................................................................................................................................................................................................................................CATT-----------------CGGAACTGCA------TATCGA.....................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000000000
..............................................................................................................................................................................................................................................................................................ACTGCA------TATCGAAAA..................................................................................................................................................................................................................................................................................................................................................................1520.50100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------AAAG-TTTACCGA.....................................................................................................................................................................................................1520.50100000010000000000
droSec2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAGGTCACAG--TGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAACTGCA------TATCGAAAACACGTTTTTTT-TAAGTGTGTAT----AT-T--GCAATT------AATACGCGCATT-ACA-----CCGG--------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------AAAG-TTAACCGACTTCAAGGC--GCAGGTTCAAGATCA---ATT----TGCTCACTGGCTA-----------------------------------------C-----------------GTTTTCCC-------------------CCTTTTCAGCCGGCAAAACGCACAACAAG---CACCACTACATCAGCCGAAGCAGCTATCCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................AATAAGGTCACAG--TGTCAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
droYak3
GAT--------------------------------------------------------------------------------------------------------------------------------------------TAAAAT-----------------------------------------------------ATTGGATTAGCGAGTTAATAAGGTCAGAG--TGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAACTGCA------TATCGAAAACACGTTTTAT---AAGTGTGTAG----AT-T--GCAATT------AATACGCGCACT-ACG-----CCGG--------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------AAAG-TTAACCGATTTCAAGGC--GCAGGTTCAAGATCA---ATT----TGCTCACTGGCAA-----------------------------------------T-----------------GTTTTCCC--------------------CTTTTCAGCCGGCAAAACGGTCCACAAG---CACCACTATATCAGCCGGAGCAGTTATCCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-----------------------------------------T-----------------GTTTTCCC--------------------CTTTTCAG.....................................................2011.00101000000000
droEre2
GAT--------------------------------------------------------------------------------------------------------------------------------------------TAAAAT-----------------------------------------------------ATTGGATTAGCGAGTTAATAAGGTCAGAG--TGTCAGTCAACCCG--AC-----AATTGCATT-----------------CGGAACTGCA------TATCGAAAACACGTTTTTT---AAGTGTGTAG----AT-T--GCAATT------AATACGCGCACT-ACA-----CCGG--------------------------------------CATTTGC----ATAAAGCAGTTCCGATGCA------AAAG-TTAACCGATTTCAAGGC--GCAGGTTCAAGATCA---ATT----TGCTCACTGGCAA-----------------------------------------C-----------------GTTTTCCC-------------------CCTTTTCAGCCGGCAAATCTGTCCACAAG---CACCACTATATCAGCCGGAGCAGTTACCCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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Generated: 05/19/2015 at 08:44 PM